| 2023-07-11 13:06:12 |
Andreas Hasenack |
bug |
|
|
added bug |
| 2023-07-11 13:15:05 |
Andreas Hasenack |
description |
https://launchpadlibrarian.net/676600060/buildlog_ubuntu-mantic-amd64.fenics-dolfinx_1%3A0.6.0-4_BUILDING.txt.gz
This might be a bug in doxygen. It didn't happen in the other arches build (which were done days earlier than amd64), and is also not happening in debian.
Investigation continues. |
https://launchpadlibrarian.net/676600060/buildlog_ubuntu-mantic-amd64.fenics-dolfinx_1%3A0.6.0-4_BUILDING.txt.gz
This might also be a bug in doxygen. It didn't happen in the other arches build (which were done days earlier than amd64), and is also not happening in debian.
From what I could see so far, in Ubuntu doxygen ends up calling dot, and dot errors with some file and exits. This exit status catches doxygen by surprise, and an atexit() handler crashes:
Thread 7 "doxygen" received signal SIGSEGV, Segmentation fault.
[Switching to Thread 0x7fffe5dfa6c0 (LWP 30404)]
0x00007fffeaa3eb03 in __run_exit_handlers (status=1, listp=0x7fffeabf6840 <__exit_funcs>, run_list_atexit=run_list_atexit@entry=true,
run_dtors=run_dtors@entry=true) at ./stdlib/exit.c:72
Download failed: Invalid argument. Continuing without source file ./stdlib/./stdlib/exit.c.
72 ./stdlib/exit.c: No such file or directory.
(gdb) bt
#0 0x00007fffeaa3eb03 in __run_exit_handlers (status=1, listp=0x7fffeabf6840 <__exit_funcs>, run_list_atexit=run_list_atexit@entry=true,
run_dtors=run_dtors@entry=true) at ./stdlib/exit.c:72
#1 0x00007fffeaa3ed20 in __GI_exit (status=<optimized out>) at ./stdlib/exit.c:141
#2 0x0000555555d5778b in handle_warn_as_error () at /usr/src/doxygen-1.9.4-4/src/message.cpp:133
#3 0x0000555555d57b2f in err (fmt=fmt@entry=0x555556356e38 "Failed to extract bounding box from generated diagram file %s\n")
at /usr/src/doxygen-1.9.4-4/src/message.cpp:237
#4 0x0000555555caebe4 in DotRunner::readBoundingBox (fileName=..., width=width@entry=0x7fffe5df9920, height=height@entry=0x7fffe5df9924,
isEps=isEps@entry=false) at /usr/src/doxygen-1.9.4-4/src/dotrunner.cpp:135
#5 0x0000555555cafae9 in DotRunner::run (this=0x555556e57860) at /usr/src/doxygen-1.9.4-4/src/dotrunner.cpp:216
#6 0x0000555555cb13d5 in DotWorkerThread::run (this=0x555556bfee70) at /usr/src/doxygen-1.9.4-4/src/dotrunner.cpp:304
#7 0x00007fffeaee6383 in std::execute_native_thread_routine (__p=0x55555728c770) at ../../../../../src/libstdc++-v3/src/c++11/thread.cc:104
#8 0x00007fffeaa8f18a in start_thread (arg=<optimized out>) at ./nptl/pthread_create.c:444
#9 0x00007fffeab1dbd0 in clone3 () at ../sysdeps/unix/sysv/linux/x86_64/clone3.S:81
Investigation continues. |
|
| 2023-07-11 14:45:21 |
Andreas Hasenack |
tags |
ftbfs |
ftbfs update-excuse |
|
| 2023-07-11 17:19:54 |
Andreas Hasenack |
bug watch added |
|
https://github.com/doxygen/doxygen/issues/9319 |
|
| 2023-07-11 17:19:54 |
Andreas Hasenack |
affects |
fenics-dolfinx (Ubuntu) |
doxygen (Ubuntu) |
|
| 2023-07-11 17:27:03 |
Andreas Hasenack |
doxygen (Ubuntu): assignee |
|
Andreas Hasenack (ahasenack) |
|
| 2023-07-11 17:27:06 |
Andreas Hasenack |
doxygen (Ubuntu): status |
New |
In Progress |
|
| 2023-07-11 17:53:57 |
Andreas Hasenack |
description |
https://launchpadlibrarian.net/676600060/buildlog_ubuntu-mantic-amd64.fenics-dolfinx_1%3A0.6.0-4_BUILDING.txt.gz
This might also be a bug in doxygen. It didn't happen in the other arches build (which were done days earlier than amd64), and is also not happening in debian.
From what I could see so far, in Ubuntu doxygen ends up calling dot, and dot errors with some file and exits. This exit status catches doxygen by surprise, and an atexit() handler crashes:
Thread 7 "doxygen" received signal SIGSEGV, Segmentation fault.
[Switching to Thread 0x7fffe5dfa6c0 (LWP 30404)]
0x00007fffeaa3eb03 in __run_exit_handlers (status=1, listp=0x7fffeabf6840 <__exit_funcs>, run_list_atexit=run_list_atexit@entry=true,
run_dtors=run_dtors@entry=true) at ./stdlib/exit.c:72
Download failed: Invalid argument. Continuing without source file ./stdlib/./stdlib/exit.c.
72 ./stdlib/exit.c: No such file or directory.
(gdb) bt
#0 0x00007fffeaa3eb03 in __run_exit_handlers (status=1, listp=0x7fffeabf6840 <__exit_funcs>, run_list_atexit=run_list_atexit@entry=true,
run_dtors=run_dtors@entry=true) at ./stdlib/exit.c:72
#1 0x00007fffeaa3ed20 in __GI_exit (status=<optimized out>) at ./stdlib/exit.c:141
#2 0x0000555555d5778b in handle_warn_as_error () at /usr/src/doxygen-1.9.4-4/src/message.cpp:133
#3 0x0000555555d57b2f in err (fmt=fmt@entry=0x555556356e38 "Failed to extract bounding box from generated diagram file %s\n")
at /usr/src/doxygen-1.9.4-4/src/message.cpp:237
#4 0x0000555555caebe4 in DotRunner::readBoundingBox (fileName=..., width=width@entry=0x7fffe5df9920, height=height@entry=0x7fffe5df9924,
isEps=isEps@entry=false) at /usr/src/doxygen-1.9.4-4/src/dotrunner.cpp:135
#5 0x0000555555cafae9 in DotRunner::run (this=0x555556e57860) at /usr/src/doxygen-1.9.4-4/src/dotrunner.cpp:216
#6 0x0000555555cb13d5 in DotWorkerThread::run (this=0x555556bfee70) at /usr/src/doxygen-1.9.4-4/src/dotrunner.cpp:304
#7 0x00007fffeaee6383 in std::execute_native_thread_routine (__p=0x55555728c770) at ../../../../../src/libstdc++-v3/src/c++11/thread.cc:104
#8 0x00007fffeaa8f18a in start_thread (arg=<optimized out>) at ./nptl/pthread_create.c:444
#9 0x00007fffeab1dbd0 in clone3 () at ../sysdeps/unix/sysv/linux/x86_64/clone3.S:81
Investigation continues. |
https://launchpadlibrarian.net/676600060/buildlog_ubuntu-mantic-amd64.fenics-dolfinx_1%3A0.6.0-4_BUILDING.txt.gz
Generating XML output for file generation.cpp
Generating XML output for file generation.h
Generating XML output ferror: Failed to extract bounding box from generated diagram file /<<PKGBUILDDIR>>/cpp/doc/latex/d2/d97/classdolfinx_1_1io_1_1FidesWriter__inherit__graph.pdf
(warning treated as error, aborting now)
Segmentation fault (core dumped)
make[1]: *** [debian/rules:168: override_dh_auto_install-indep] Error 139
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:125: binary] Error 2
dpkg-buildpackage: error: fakeroot debian/rules binary subprocess returned exit status 2
This might also be a bug in doxygen. It didn't happen in the other arches build (which were done days earlier than amd64), and is also not happening in debian.
From what I could see so far, in Ubuntu doxygen ends up calling dot, and dot errors with some file and exits. This exit status catches doxygen by surprise, and an atexit() handler crashes:
Thread 7 "doxygen" received signal SIGSEGV, Segmentation fault.
[Switching to Thread 0x7fffe5dfa6c0 (LWP 30404)]
0x00007fffeaa3eb03 in __run_exit_handlers (status=1, listp=0x7fffeabf6840 <__exit_funcs>, run_list_atexit=run_list_atexit@entry=true,
run_dtors=run_dtors@entry=true) at ./stdlib/exit.c:72
Download failed: Invalid argument. Continuing without source file ./stdlib/./stdlib/exit.c.
72 ./stdlib/exit.c: No such file or directory.
(gdb) bt
#0 0x00007fffeaa3eb03 in __run_exit_handlers (status=1, listp=0x7fffeabf6840 <__exit_funcs>, run_list_atexit=run_list_atexit@entry=true,
run_dtors=run_dtors@entry=true) at ./stdlib/exit.c:72
#1 0x00007fffeaa3ed20 in __GI_exit (status=<optimized out>) at ./stdlib/exit.c:141
#2 0x0000555555d5778b in handle_warn_as_error () at /usr/src/doxygen-1.9.4-4/src/message.cpp:133
#3 0x0000555555d57b2f in err (fmt=fmt@entry=0x555556356e38 "Failed to extract bounding box from generated diagram file %s\n")
at /usr/src/doxygen-1.9.4-4/src/message.cpp:237
#4 0x0000555555caebe4 in DotRunner::readBoundingBox (fileName=..., width=width@entry=0x7fffe5df9920, height=height@entry=0x7fffe5df9924,
isEps=isEps@entry=false) at /usr/src/doxygen-1.9.4-4/src/dotrunner.cpp:135
#5 0x0000555555cafae9 in DotRunner::run (this=0x555556e57860) at /usr/src/doxygen-1.9.4-4/src/dotrunner.cpp:216
#6 0x0000555555cb13d5 in DotWorkerThread::run (this=0x555556bfee70) at /usr/src/doxygen-1.9.4-4/src/dotrunner.cpp:304
#7 0x00007fffeaee6383 in std::execute_native_thread_routine (__p=0x55555728c770) at ../../../../../src/libstdc++-v3/src/c++11/thread.cc:104
#8 0x00007fffeaa8f18a in start_thread (arg=<optimized out>) at ./nptl/pthread_create.c:444
#9 0x00007fffeab1dbd0 in clone3 () at ../sysdeps/unix/sysv/linux/x86_64/clone3.S:81
Investigation continues. |
|
| 2023-07-11 17:57:56 |
Andreas Hasenack |
bug watch added |
|
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1040864 |
|
| 2023-07-11 17:57:56 |
Andreas Hasenack |
bug task added |
|
doxygen (Debian) |
|
| 2023-07-11 18:19:14 |
Bug Watch Updater |
doxygen (Debian): status |
Unknown |
New |
|
| 2023-07-14 14:10:58 |
Andreas Hasenack |
doxygen (Ubuntu): assignee |
Andreas Hasenack (ahasenack) |
|
|
| 2023-07-14 14:11:02 |
Andreas Hasenack |
doxygen (Ubuntu): status |
In Progress |
Triaged |
|
| 2023-07-14 14:11:06 |
Andreas Hasenack |
doxygen (Ubuntu): importance |
Undecided |
High |
|
| 2023-09-01 18:16:44 |
Bug Watch Updater |
doxygen (Debian): status |
New |
Fix Committed |
|
| 2023-09-03 19:15:15 |
Bug Watch Updater |
doxygen (Debian): status |
Fix Committed |
Fix Released |
|
| 2023-11-07 09:50:28 |
Gianfranco Costamagna |
doxygen (Ubuntu): status |
Triaged |
Fix Released |
|
