RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-033 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:59 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_157 python-lpbuildd_157 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.3 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 6 Dec 07:17:37 ntpdate[1816]: adjust time server 10.211.37.1 offset -0.001654 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13822471 /home/buildd/filecache-default/f027e517e95d0e91684230ee23be60d709f816c0 Creating target for build PACKAGEBUILD-13822471 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13822471 Starting target for build PACKAGEBUILD-13822471 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13822471 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13822471 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13822471 Updating target for build PACKAGEBUILD-13822471 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [85.4 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 Packages [1016 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [522 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe amd64 Packages [8324 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4890 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 Packages [62.9 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [31.7 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 Packages [177 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [97.2 kB] Fetched 15.6 MB in 3s (4013 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'sudo apt autoremove' to remove them. The following packages will be upgraded: adduser apt apt-transport-https base-files base-passwd binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential coreutils cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapparmor1 libapt-pkg5.0 libasan4 libassuan0 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdpkg-perl libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libgssapi-krb5-2 libhogweed4 libidn2-0 libip4tc0 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpx2 libnettle6 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libpsl5 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan0 libudev1 libuuid1 linux-libc-dev lsb-base mount multiarch-support openssl optipng perl perl-base perl-modules-5.26 pinentry-curses sensible-utils systemd systemd-sysv sysvinit-utils tzdata util-linux 103 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 62.2 MB of archives. After this operation, 785 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main amd64 base-files amd64 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 bsdutils amd64 1:2.30.2-0.1ubuntu1 [60.1 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main amd64 coreutils amd64 8.26-3ubuntu4 [1213 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 debianutils amd64 4.8.3 [85.8 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 dpkg amd64 1.19.0.4ubuntu1 [1145 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6-dev amd64 2.26-0ubuntu2 [2524 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-dev-bin amd64 2.26-0ubuntu2 [69.6 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 linux-libc-dev amd64 4.14.0-11.13 [960 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libitm1 amd64 7.2.0-17ubuntu1 [27.6 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gcc-7-base amd64 7.2.0-17ubuntu1 [18.8 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgcc1 amd64 1:7.2.0-17ubuntu1 [39.3 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libmpx2 amd64 7.2.0-17ubuntu1 [11.8 kB] Get:13 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgomp1 amd64 7.2.0-17ubuntu1 [76.3 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libatomic1 amd64 7.2.0-17ubuntu1 [8988 B] Get:15 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libasan4 amd64 7.2.0-17ubuntu1 [359 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 liblsan0 amd64 7.2.0-17ubuntu1 [134 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libtsan0 amd64 7.2.0-17ubuntu1 [280 kB] Get:18 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libubsan0 amd64 7.2.0-17ubuntu1 [126 kB] Get:19 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcilkrts5 amd64 7.2.0-17ubuntu1 [42.4 kB] Get:20 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libquadmath0 amd64 7.2.0-17ubuntu1 [133 kB] Get:21 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 cpp-7 amd64 7.2.0-17ubuntu1 [6728 kB] Get:22 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcc1-0 amd64 7.2.0-17ubuntu1 [38.7 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 g++-7 amd64 7.2.0-17ubuntu1 [7549 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gcc-7 amd64 7.2.0-17ubuntu1 [7419 kB] Get:25 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgcc-7-dev amd64 7.2.0-17ubuntu1 [2378 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libstdc++-7-dev amd64 7.2.0-17ubuntu1 [1455 kB] Get:27 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libstdc++6 amd64 7.2.0-17ubuntu1 [397 kB] Get:28 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgmp10 amd64 2:6.1.2+dfsg-1.1 [241 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main amd64 libbinutils amd64 2.29.1-10ubuntu1 [503 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils amd64 2.29.1-10ubuntu1 [3412 B] Get:31 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils-common amd64 2.29.1-10ubuntu1 [190 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main amd64 binutils-x86-64-linux-gnu amd64 2.29.1-10ubuntu1 [1824 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main amd64 libc6 amd64 2.26-0ubuntu2 [2778 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main amd64 e2fslibs amd64 1.43.7-1 [157 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main amd64 e2fsprogs amd64 1.43.7-1 [498 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main amd64 findutils amd64 4.6.0+git+20170828-2 [291 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main amd64 perl-modules-5.26 all 5.26.1-3 [2761 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main amd64 libperl5.26 amd64 5.26.1-3 [3541 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main amd64 perl amd64 5.26.1-3 [201 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main amd64 perl-base amd64 5.26.1-3 [1389 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main amd64 libuuid1 amd64 2.30.2-0.1ubuntu1 [14.8 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main amd64 libblkid1 amd64 2.30.2-0.1ubuntu1 [119 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main amd64 libsmartcols1 amd64 2.30.2-0.1ubuntu1 [78.8 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main amd64 libfdisk1 amd64 2.30.2-0.1ubuntu1 [157 kB] Get:45 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libpcre3 amd64 2:8.39-8 [229 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main amd64 libselinux1 amd64 2.7-2 [68.3 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main amd64 libmount1 amd64 2.30.2-0.1ubuntu1 [131 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main amd64 fdisk amd64 2.30.2-0.1ubuntu1 [105 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main amd64 util-linux amd64 2.30.2-0.1ubuntu1 [879 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main amd64 base-passwd amd64 3.5.44 [47.2 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main amd64 libc-bin amd64 2.26-0ubuntu2 [593 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main amd64 sysvinit-utils amd64 2.88dsf-59.10ubuntu1 [18.6 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main amd64 libudev1 amd64 235-3ubuntu2 [54.8 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main amd64 libapt-pkg5.0 amd64 1.6~alpha5 [778 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main amd64 debconf all 1.5.65 [124 kB] Get:56 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 adduser all 3.116ubuntu1 [163 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main amd64 libgpg-error0 amd64 1.27-5 [36.9 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcrypt20 amd64 1.8.1-4 [417 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main amd64 gpgv amd64 2.1.15-1ubuntu8 [186 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu3 [37.3 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main amd64 apt amd64 1.6~alpha5 [1145 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main amd64 libapparmor1 amd64 2.11.0-2ubuntu18 [28.8 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap2 amd64 1:2.25-1.2 [13.0 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main amd64 libip4tc0 amd64 1.6.1-2ubuntu2 [19.6 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main amd64 mount amd64 2.30.2-0.1ubuntu1 [110 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main amd64 systemd amd64 235-3ubuntu2 [2834 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main amd64 libsystemd0 amd64 235-3ubuntu2 [196 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main amd64 systemd-sysv amd64 235-3ubuntu2 [13.1 kB] Get:69 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sensible-utils all 0.0.11 [14.8 kB] Get:80 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libassuan0 amd64 2.4.5-1 [34.8 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main amd64 pinentry-curses amd64 1.0.0-3 [34.7 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main amd64 libnpth0 amd64 1.5-3 [7668 B] Get:83 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg amd64 2.1.15-1ubuntu8 [780 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main amd64 gnupg-agent amd64 2.1.15-1ubuntu8 [255 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main amd64 libsqlite3-0 amd64 3.21.0-1 [492 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main amd64 libssl1.0.0 amd64 1.0.2g-1ubuntu14 [1081 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main amd64 multiarch-support amd64 2.26-0ubuntu2 [6832 B] Get:88 http://ftpmaster.internal/ubuntu bionic/main amd64 openssl amd64 1.0.2g-1ubuntu14 [495 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main amd64 tzdata all 2017c-1 [188 kB] Get:90 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgssapi-krb5-2 amd64 1.15.2-2 [121 kB] Get:91 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libkrb5-3 amd64 1.15.2-2 [278 kB] Get:92 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libkrb5support0 amd64 1.15.2-2 [31.5 kB] Get:93 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libk5crypto3 amd64 1.15.2-2 [85.4 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main amd64 libkeyutils1 amd64 1.5.9-9.2ubuntu1 [9308 B] Get:95 http://ftpmaster.internal/ubuntu bionic/main amd64 libidn2-0 amd64 2.0.4-1 [93.2 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main amd64 libpng16-16 amd64 1.6.34-1 [176 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/universe amd64 apt-transport-https all 1.6~alpha5 [1692 B] Get:98 http://ftpmaster.internal/ubuntu bionic/main amd64 dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/main amd64 libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/main amd64 build-essential amd64 12.4ubuntu1 [4758 B] Get:101 http://ftpmaster.internal/ubuntu bionic/main amd64 libpsl5 amd64 0.19.1-4 [41.2 kB] Get:102 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcurl3-gnutls amd64 7.55.1-1ubuntu3 [193 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main amd64 optipng amd64 0.7.6-1ubuntu1 [83.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 62.2 MB in 1s (54.4 MB/s) (Reading database ... 12676 files and directories currently installed.) Preparing to unpack .../base-files_10ubuntu1_amd64.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12676 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.30.2-0.1ubuntu1_amd64.deb ... Unpacking bsdutils (1:2.30.2-0.1ubuntu1) over (1:2.30.1-0ubuntu4) ... Setting up bsdutils (1:2.30.2-0.1ubuntu1) ... (Reading database ... 12676 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_amd64.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12676 files and directories currently installed.) 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13822471 amd64 bionic-proposed -c chroot:build-PACKAGEBUILD-13822471 --arch=amd64 --dist=bionic-proposed --nolog -A dipy_0.13.0-2.dsc Initiating build PACKAGEBUILD-13822471 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:59 UTC 2017 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-033.buildd +==============================================================================+ | dipy 0.13.0-2 (amd64) 06 Dec 2017 07:18 | +==============================================================================+ Package: dipy Version: 0.13.0-2 Source Version: 0.13.0-2 Distribution: bionic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/dipy-8XESid/dipy-0.13.0' with '<>' I: NOTICE: Log filtering will replace 'build/dipy-8XESid' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13822471/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- dipy_0.13.0-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-gd_YGV/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-gd_YGV/apt_archive ./ InRelease Get:2 copy:/<>/resolver-gd_YGV/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-gd_YGV/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-gd_YGV/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-gd_YGV/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (101 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libunistring0 libustr-1.0-1 libwind0-heimdal Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-gd_YGV/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12679 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 7.0.50~), python-all-dev, python-numpy (>= 1:1.7.1~), python-h5py, python-scipy, cython (>= 0.13), python-matplotlib, python-sphinx (>= 1.0), python-nose, python-nibabel, libgomp1 Filtered Build-Depends: debhelper (>= 7.0.50~), python-all-dev, python-numpy (>= 1:1.7.1~), python-h5py, python-scipy, cython (>= 0.13), python-matplotlib, python-sphinx (>= 1.0), python-nose, python-nibabel, libgomp1 dpkg-deb: building package 'sbuild-build-depends-dipy-dummy' in '/<>/resolver-e3vd3J/apt_archive/sbuild-build-depends-dipy-dummy.deb'. Ign:1 copy:/<>/resolver-e3vd3J/apt_archive ./ InRelease Get:2 copy:/<>/resolver-e3vd3J/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-e3vd3J/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-e3vd3J/apt_archive ./ Sources [287 B] Get:5 copy:/<>/resolver-e3vd3J/apt_archive ./ Packages [606 B] Fetched 3012 B in 0s (90.3 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install dipy build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libasn1-8-heimdal libcurl3-gnutls libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libidn2-0 libkrb5-26-heimdal libldap-2.4-2 libldap-common libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libustr-1.0-1 libwind0-heimdal Use 'apt autoremove' to remove them. The following additional packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-strip-nondeterminism docutils-common file fontconfig fontconfig-config fonts-lyx gettext gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme intltool-debian libaec0 libarchive-zip-perl libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libbsd0 libcairo2 libcroco3 libcups2 libdatrie1 libdbus-1-3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran4 libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhdf5-100 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librsvg2-2 librsvg2-common libsigsegv2 libsz2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 m4 man-db mime-support po-debconf python python-alabaster python-all python-all-dev python-babel python-babel-localedata python-certifi python-chardet python-cycler python-dateutil python-decorator python-dev python-docutils python-functools32 python-h5py python-idna python-imagesize python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-nibabel python-nose python-numpy python-pkg-resources python-pygments python-pyparsing python-requests python-roman python-scipy python-six python-sphinx python-subprocess32 python-typing python-tz python-urllib3 python2.7 python2.7-dev python2.7-minimal sgml-base shared-mime-info sphinx-common ttf-bitstream-vera ubuntu-mono ucf xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff cups-common gvfs libjs-jquery-ui-docs librsvg2-bin libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser apparmor libmail-box-perl python-doc python-tk python-cycler-doc fonts-linuxlibertine | ttf-linux-libertine texlive-lang-french texlive-latex-base texlive-latex-recommended python-h5py-doc python-jinja2-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython python-cairocffi python-configobj python-excelerator python-gobject python-gtk2 python-matplotlib-doc python-qt4 python-sip python-tornado python-traits python-wxgtk3.0 texlive-extra-utils texlive-latex-extra ttf-staypuft python-nibabel-doc python-coverage python-nose-doc gfortran python-numpy-dbg python-numpy-doc python-setuptools python-pyparsing-doc python-cryptography python-openssl python-socks python-scipy-doc python-sphinx-rtd-theme libjs-mathjax texlive-fonts-recommended texlive-generic-extra latexmk imagemagick-6.q16 sphinx-doc python-ntlm python2.7-doc binfmt-support sgml-base-doc Recommended packages: curl | wget | lynx-cur dbus libarchive-cpio-perl libgdk-pixbuf2.0-bin libglib2.0-data xdg-user-dirs libgail-common libgtk2.0-bin javascript-common libltdl-dev libmail-sendmail-perl docutils-doc libpaper-utils python-pil python-glade2 python-imaging python-tk python-dicom python-fuse python-mock python-enum34 python-cryptography python-ipaddress python-openssl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils cython debhelper dh-autoreconf dh-strip-nondeterminism docutils-common file fontconfig fontconfig-config fonts-lyx gettext gettext-base groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme intltool-debian libaec0 libarchive-zip-perl libatk1.0-0 libatk1.0-data libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libbsd0 libcairo2 libcroco3 libcups2 libdatrie1 libdbus-1-3 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgfortran4 libglib2.0-0 libgraphite2-3 libgtk2.0-0 libgtk2.0-common libharfbuzz0b libhdf5-100 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpipeline1 libpixman-1-0 libpython-all-dev libpython-dev libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib librsvg2-2 librsvg2-common libsigsegv2 libsz2 libthai-data libthai0 libtiff5 libtimedate-perl libtool libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxcomposite1 libxcursor1 libxdamage1 libxdmcp6 libxext6 libxfixes3 libxi6 libxinerama1 libxml2 libxrandr2 libxrender1 m4 man-db mime-support po-debconf python python-alabaster python-all python-all-dev python-babel python-babel-localedata python-certifi python-chardet python-cycler python-dateutil python-decorator python-dev python-docutils python-functools32 python-h5py python-idna python-imagesize python-jinja2 python-markupsafe python-matplotlib python-matplotlib-data python-minimal python-nibabel python-nose python-numpy python-pkg-resources python-pygments python-pyparsing python-requests python-roman python-scipy python-six python-sphinx python-subprocess32 python-typing python-tz python-urllib3 python2.7 python2.7-dev python2.7-minimal sbuild-build-depends-dipy-dummy sgml-base shared-mime-info sphinx-common ttf-bitstream-vera ubuntu-mono ucf xml-core 0 upgraded, 151 newly installed, 1 to remove and 0 not upgraded. Need to get 95.2 MB of archives. After this operation, 384 MB of additional disk space will be used. Get:1 copy:/<>/resolver-e3vd3J/apt_archive ./ sbuild-build-depends-dipy-dummy 0.invalid.0 [936 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 libxau6 amd64 1:1.0.8-1 [8376 B] Get:3 http://ftpmaster.internal/ubuntu bionic/main amd64 libbsd0 amd64 0.8.6-3 [41.7 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 libxdmcp6 amd64 1:1.1.2-3 [10.7 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 libxcb1 amd64 1.12-1ubuntu1 [45.2 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main amd64 libx11-data all 2:1.6.4-3 [114 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main amd64 libx11-6 amd64 2:1.6.4-3 [572 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main amd64 libxext6 amd64 2:1.3.3-1 [29.4 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main amd64 groff-base amd64 1.22.3-9 [1144 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main amd64 bsdmainutils amd64 9.0.14ubuntu1 [179 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main amd64 libpipeline1 amd64 1.5.0-1 [25.3 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main amd64 man-db amd64 2.7.6.1-4 [898 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main amd64 libexpat1 amd64 2.2.3-2 [81.3 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main amd64 libfreetype6 amd64 2.8-0.2ubuntu2 [333 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main amd64 ucf all 3.0036 [52.9 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main amd64 fontconfig-config all 2.12.6-0ubuntu1 [55.5 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main amd64 libfontconfig1 amd64 2.12.6-0ubuntu1 [136 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main amd64 fontconfig amd64 2.12.6-0ubuntu1 [169 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main amd64 libjpeg-turbo8 amd64 1.5.2-0ubuntu5 [110 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main amd64 libxinerama1 amd64 2:1.1.3-1 [7908 B] Get:22 http://ftpmaster.internal/ubuntu bionic/main amd64 libpython2.7-minimal amd64 2.7.14-2ubuntu2 [338 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main amd64 python2.7-minimal amd64 2.7.14-2ubuntu2 [1286 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main amd64 python-minimal amd64 2.7.14-2ubuntu1 [28.1 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main amd64 mime-support all 3.60ubuntu1 [30.1 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main amd64 libpython2.7-stdlib amd64 2.7.14-2ubuntu2 [1910 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main amd64 python2.7 amd64 2.7.14-2ubuntu2 [233 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main amd64 libpython-stdlib amd64 2.7.14-2ubuntu1 [7576 B] Get:29 http://ftpmaster.internal/ubuntu bionic/main amd64 python amd64 2.7.14-2ubuntu1 [140 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main amd64 sgml-base all 1.29 [12.3 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main amd64 libmagic-mgc amd64 1:5.32-1 [184 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main amd64 libmagic1 amd64 1:5.32-1 [68.4 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main amd64 file amd64 1:5.32-1 [22.0 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main amd64 libdbus-1-3 amd64 1.12.2-1ubuntu1 [175 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main amd64 libglib2.0-0 amd64 2.54.1-1ubuntu1 [1163 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main amd64 libicu60 amd64 60.1-1ubuntu2 [8042 kB] Get:38 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libxml2 amd64 2.9.4+dfsg1-5.1ubuntu1 [669 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main amd64 shared-mime-info amd64 1.9-2 [426 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext-base amd64 0.19.8.1-4ubuntu1 [49.4 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main amd64 hicolor-icon-theme all 0.17-1 [10.3 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:43 http://ftpmaster.internal/ubuntu bionic/main amd64 libtiff5 amd64 4.0.8-6 [150 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main amd64 libgdk-pixbuf2.0-common all 2.36.11-1 [4260 B] Get:45 http://ftpmaster.internal/ubuntu bionic/main amd64 libgdk-pixbuf2.0-0 amd64 2.36.11-1 [165 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main amd64 gtk-update-icon-cache amd64 3.22.26-2ubuntu1 [27.7 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main amd64 libpixman-1-0 amd64 0.34.0-1 [230 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main amd64 libxcb-render0 amd64 1.12-1ubuntu1 [14.8 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main amd64 libxcb-shm0 amd64 1.12-1ubuntu1 [5482 B] Get:50 http://ftpmaster.internal/ubuntu bionic/main amd64 libxrender1 amd64 1:0.9.10-1 [18.7 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main amd64 libcairo2 amd64 1.15.8-2 [573 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main amd64 libcroco3 amd64 0.6.12-1 [81.3 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main amd64 libthai-data all 0.1.27-1 [133 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main amd64 libdatrie1 amd64 0.2.10-5 [17.6 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main amd64 libthai0 amd64 0.1.27-1 [17.8 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main amd64 libpango-1.0-0 amd64 1.40.13-2 [153 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/main amd64 libgraphite2-3 amd64 1.3.10-6 [77.7 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main amd64 libharfbuzz0b amd64 1.7.1-1 [230 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main amd64 libpangoft2-1.0-0 amd64 1.40.13-2 [33.2 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main amd64 libpangocairo-1.0-0 amd64 1.40.13-2 [20.8 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main amd64 librsvg2-2 amd64 2.40.18-2 [96.0 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main amd64 librsvg2-common amd64 2.40.18-2 [5148 B] Get:63 http://ftpmaster.internal/ubuntu bionic/main amd64 humanity-icon-theme all 0.6.13 [1288 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main amd64 ubuntu-mono all 16.10+18.04.20171115.1-0ubuntu1 [151 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main amd64 adwaita-icon-theme all 3.26.1-1ubuntu1 [3447 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main amd64 libsigsegv2 amd64 2.11-1 [13.2 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main amd64 m4 amd64 1.4.18-1 [197 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main amd64 autoconf all 2.69-11 [322 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main amd64 autotools-dev all 20161112.1+nmu1 [40.2 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main amd64 automake all 1:1.15.1-3ubuntu1 [509 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main amd64 autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/universe amd64 cython amd64 0.26.1-0.4 [1874 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main amd64 libtool all 2.4.6-2 [194 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-autoreconf all 15 [15.8 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main amd64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main amd64 libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-strip-nondeterminism all 0.040-1 [5196 B] Get:79 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext amd64 0.19.8.1-4ubuntu1 [1093 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main amd64 po-debconf all 1.0.20 [232 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main amd64 debhelper all 10.10.9ubuntu1 [871 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main amd64 xml-core all 0.18 [21.3 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main amd64 docutils-common all 0.14+dfsg-1 [156 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/universe amd64 fonts-lyx all 2.2.3-2 [155 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/universe amd64 libaec0 amd64 0.3.2-2 [18.1 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main amd64 libatk1.0-data all 2.26.1-1 [2884 B] Get:88 http://ftpmaster.internal/ubuntu bionic/main amd64 libatk1.0-0 amd64 2.26.1-1 [44.1 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main amd64 libavahi-common-data amd64 0.6.32-1ubuntu1 [22.0 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main amd64 libavahi-common3 amd64 0.6.32-1ubuntu1 [21.6 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main amd64 libavahi-client3 amd64 0.6.32-1ubuntu1 [25.1 kB] Get:92 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kB] Get:151 http://ftpmaster.internal/ubuntu bionic/universe amd64 python-nibabel all 2.2.1-1 [2200 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 95.2 MB in 3s (28.1 MB/s) (Reading database ... 12679 files and directories currently installed.) 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Setting up libexpat1:amd64 (2.2.3-2) ... Setting up libicu60:amd64 (60.1-1ubuntu2) ... Setting up libgtk2.0-common (2.24.31-2ubuntu1) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libjs-underscore (1.8.3~dfsg-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libgfortran4:amd64 (7.2.0-17ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libjbig0:amd64 (2.1-3.1) ... Setting up libsigsegv2:amd64 (2.11-1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:amd64 (2.54.1-1ubuntu1) ... No schema files found: doing nothing. Setting up libjs-sphinxdoc (1.6.5-2) ... Setting up libgdk-pixbuf2.0-common (2.36.11-1) ... Setting up libdatrie1:amd64 (0.2.10-5) ... Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up libjpeg-turbo8:amd64 (1.5.2-0ubuntu5) ... Setting up libpipeline1:amd64 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up sgml-base (1.29) ... Setting up libbsd0:amd64 (0.8.6-3) ... Setting up ucf (3.0036) ... Setting up libxml2:amd64 (2.9.4+dfsg1-5.1ubuntu1) ... Setting up libfreetype6:amd64 (2.8-0.2ubuntu2) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:amd64 (1:5.32-1) ... Setting up libgraphite2-3:amd64 (1.3.10-6) ... Setting up libcroco3:amd64 (0.6.12-1) ... Setting up libatk1.0-data (2.26.1-1) ... Setting up libpixman-1-0:amd64 (0.34.0-1) ... Setting up libblas3:amd64 (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1+nmu1) ... Setting up libatk1.0-0:amd64 (2.26.1-1) ... Setting up python-babel-localedata (2.4.0+dfsg.1-2ubuntu1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up sphinx-common (1.6.5-2) ... Setting up libexpat1-dev:amd64 (2.2.3-2) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up shared-mime-info (1.9-2) ... Setting up libthai-data (0.1.27-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up xml-core (0.18) ... Setting up bsdmainutils (9.0.14ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up hicolor-icon-theme (0.17-1) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libpython2.7-stdlib:amd64 (2.7.14-2ubuntu2) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up libdbus-1-3:amd64 (1.12.2-1ubuntu1) ... Setting up libavahi-common-data:amd64 (0.6.32-1ubuntu1) ... Setting up fonts-lyx (2.2.3-2) ... Setting up libsz2:amd64 (0.3.2-2) ... Setting up libfile-stripnondeterminism-perl (0.040-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up fontconfig-config (2.12.6-0ubuntu1) ... Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-4) ... Setting up python-matplotlib-data (2.0.0+dfsg1-2ubuntu3) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up liblapack3:amd64 (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up python2.7 (2.7.14-2ubuntu2) ... Setting up libharfbuzz0b:amd64 (1.7.1-1) ... Setting up libtiff5:amd64 (4.0.8-6) ... Setting up autoconf (2.69-11) ... Setting up libthai0:amd64 (0.1.27-1) ... Setting up file (1:5.32-1) ... Setting up libpython-stdlib:amd64 (2.7.14-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libpython2.7:amd64 (2.7.14-2ubuntu2) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2.7-dev:amd64 (2.7.14-2ubuntu2) ... Setting up libavahi-common3:amd64 (0.6.32-1ubuntu1) ... Setting up python2.7-dev (2.7.14-2ubuntu2) ... Setting up libxcb1:amd64 (1.12-1ubuntu1) ... Setting up python (2.7.14-2ubuntu1) ... Setting up python-typing (3.6.2-1) ... Setting up python-pyparsing (2.1.10+dfsg1-1) ... Setting up python-idna (2.5-1) ... Setting up libtool (2.4.6-2) ... Setting up libpython-dev:amd64 (2.7.14-2ubuntu1) ... Setting up libfontconfig1:amd64 (2.12.6-0ubuntu1) ... Setting up python-functools32 (3.2.3.2-3) ... Setting up libxcb-render0:amd64 (1.12-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up python-dev (2.7.14-2ubuntu1) ... Setting up python-certifi (2017.7.27.1-2) ... Setting up python-tz (2017.2-2) ... Setting up libx11-6:amd64 (2:1.6.4-3) ... Setting up libpython-all-dev:amd64 (2.7.14-2ubuntu1) ... Setting up python-imagesize (0.7.1-1) ... Setting up python-alabaster (0.7.8-1) ... Setting up python-pkg-resources (38.2.4-1) ... Setting up python-roman (2.0.0-2) ... Setting up python-markupsafe (1.0-1build1) ... Setting up python-numpy (1:1.13.3-2ubuntu1) ... Setting up cython (0.26.1-0.4) ... Setting up python-six (1.11.0-1) ... Setting up python-pygments (2.2.0+dfsg-1) ... Setting up libxcomposite1:amd64 (1:0.4.4-2) ... Setting up libxcb-shm0:amd64 (1.12-1ubuntu1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libavahi-client3:amd64 (0.6.32-1ubuntu1) ... Setting up python-decorator (4.1.2-1) ... Setting up python-subprocess32 (3.2.7-2) ... Setting up python-nose (1.3.7-3) ... Setting up python-all (2.7.14-2ubuntu1) ... Setting up fontconfig (2.12.6-0ubuntu1) ... Regenerating fonts cache... done. Setting up libcups2:amd64 (2.2.6-2) ... Setting up python-urllib3 (1.21.1-1) ... Setting up python-h5py (2.7.1-2) ... Setting up python-chardet (3.0.4-1) ... Setting up libxdamage1:amd64 (1:1.1.4-3) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up python-scipy (0.19.1-1ubuntu1) ... Setting up python-jinja2 (2.10-1) ... Setting up python-babel (2.4.0+dfsg.1-2ubuntu1) ... update-alternatives: using /usr/bin/pybabel-python2 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up libgdk-pixbuf2.0-0:amd64 (2.36.11-1) ... Setting up python-cycler (0.10.0-1) ... Setting up python-dateutil (2.6.1-1) ... Setting up gtk-update-icon-cache (3.22.26-2ubuntu1) ... Setting up libxcursor1:amd64 (1:1.1.14-3ubuntu1) ... Setting up python-all-dev (2.7.14-2ubuntu1) ... Setting up libpango-1.0-0:amd64 (1.40.13-2) ... Setting up python-requests (2.18.1-1) ... Setting up python-nibabel (2.2.1-1) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libcairo2:amd64 (1.15.8-2) ... Setting up libxinerama1:amd64 (2:1.1.3-1) ... Setting up libpangoft2-1.0-0:amd64 (1.40.13-2) ... Setting up libpangocairo-1.0-0:amd64 (1.40.13-2) ... Setting up librsvg2-2:amd64 (2.40.18-2) ... Setting up librsvg2-common:amd64 (2.40.18-2) ... Processing triggers for sgml-base (1.29) ... Setting up docutils-common (0.14+dfsg-1) ... Processing triggers for sgml-base (1.29) ... Setting up python-docutils (0.14+dfsg-1) ... update-alternatives: using /usr/share/docutils/scripts/python2/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python2/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python-sphinx (1.6.5-2) ... Setting up adwaita-icon-theme (3.26.1-1ubuntu1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libgtk2.0-0:amd64 (2.24.31-2ubuntu1) ... Setting up dh-autoreconf (15) ... Setting up python-matplotlib (2.0.0+dfsg1-2ubuntu3) ... Setting up humanity-icon-theme (0.6.13) ... Setting up dh-strip-nondeterminism (0.040-1) ... Setting up debhelper (10.10.9ubuntu1) ... Setting up ubuntu-mono (16.10+18.04.20171115.1-0ubuntu1) ... Setting up sbuild-build-depends-dipy-dummy (0.invalid.0) ... (Reading database ... 34567 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.36.11-1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-101-generic amd64 (x86_64) Toolchain package versions: binutils_2.29.1-10ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-17ubuntu1 gcc-7_7.2.0-17ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-17ubuntu1 libstdc++6_7.2.0-17ubuntu1 linux-libc-dev_4.14.0-11.13 Package versions: adduser_3.116ubuntu1 advancecomp_2.0-1 adwaita-icon-theme_3.26.1-1ubuntu1 apt_1.6~alpha5 apt-transport-https_1.6~alpha5 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1+nmu1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.29.1-10ubuntu1 binutils-common_2.29.1-10ubuntu1 binutils-x86-64-linux-gnu_2.29.1-10ubuntu1 bsdmainutils_9.0.14ubuntu1 bsdutils_1:2.30.2-0.1ubuntu1 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libxml2_2.9.4+dfsg1-5.1ubuntu1 libxrandr2_2:1.5.1-1 libxrender1_1:0.9.10-1 linux-libc-dev_4.14.0-11.13 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-4 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.30.2-0.1ubuntu1 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu14 optipng_0.7.6-1ubuntu1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.1-3 perl-base_5.26.1-3 perl-modules-5.26_5.26.1-3 pinentry-curses_1.0.0-3 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python_2.7.14-2ubuntu1 python-alabaster_0.7.8-1 python-all_2.7.14-2ubuntu1 python-all-dev_2.7.14-2ubuntu1 python-babel_2.4.0+dfsg.1-2ubuntu1 python-babel-localedata_2.4.0+dfsg.1-2ubuntu1 python-certifi_2017.7.27.1-2 python-chardet_3.0.4-1 python-cycler_0.10.0-1 python-dateutil_2.6.1-1 python-decorator_4.1.2-1 python-dev_2.7.14-2ubuntu1 python-docutils_0.14+dfsg-1 python-functools32_3.2.3.2-3 python-h5py_2.7.1-2 python-idna_2.5-1 python-imagesize_0.7.1-1 python-jinja2_2.10-1 python-markupsafe_1.0-1build1 python-matplotlib_2.0.0+dfsg1-2ubuntu3 python-matplotlib-data_2.0.0+dfsg1-2ubuntu3 python-minimal_2.7.14-2ubuntu1 python-nibabel_2.2.1-1 python-nose_1.3.7-3 python-numpy_1:1.13.3-2ubuntu1 python-pkg-resources_38.2.4-1 python-pygments_2.2.0+dfsg-1 python-pyparsing_2.1.10+dfsg1-1 python-requests_2.18.1-1 python-roman_2.0.0-2 python-scipy_0.19.1-1ubuntu1 python-six_1.11.0-1 python-sphinx_1.6.5-2 python-subprocess32_3.2.7-2 python-typing_3.6.2-1 python-tz_2017.2-2 python-urllib3_1.21.1-1 python2.7_2.7.14-2ubuntu2 python2.7-dev_2.7.14-2ubuntu2 python2.7-minimal_2.7.14-2ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-dipy-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.11 sgml-base_1.29 shared-mime-info_1.9-2 sphinx-common_1.6.5-2 systemd_235-3ubuntu2 systemd-sysv_235-3ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 ttf-bitstream-vera_1.10-8 tzdata_2017c-1 ubuntu-keyring_2016.10.27 ubuntu-mono_16.10+18.04.20171115.1-0ubuntu1 ucf_3.0036 util-linux_2.30.2-0.1ubuntu1 xml-core_0.18 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Nov 26 03:18:53 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dipy_0.13.0-2.dsc dpkg-source: info: extracting dipy in dipy-0.13.0 dpkg-source: info: unpacking dipy_0.13.0.orig.tar.gz dpkg-source: info: unpacking dipy_0.13.0.orig-doc-examples.tar.gz dpkg-source: info: unpacking dipy_0.13.0-2.debian.tar.xz dpkg-source: info: applying deb_allow_older_cython dpkg-source: info: applying deb_no_sources_for_docs dpkg-source: info: applying 1300.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13822471 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13822471 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13822471 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package dipy dpkg-buildpackage: info: source version 0.13.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build dipy-0.13.0 dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from dipy-0.13.0/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ fakeroot debian/rules clean dh --buildsystem=python_distutils clean --with python2 dh: Compatibility levels before 9 are deprecated (level 7 in use) debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' find dipy -iname *.c | xargs grep -l -e 'Generated by Cython' | xargs -r rm -f rm -f pyx-stamps dh_auto_clean override_dh_auto_clean dh_auto_clean: Compatibility levels before 9 are deprecated (level 7 in use) python setup.py clean -a running clean 'build/lib.linux-x86_64-2.7' does not exist -- can't clean it 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it find . -name \*.pyc -exec rm {} \+ make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' : # I: Custom cleaning rm -rf build doc-stamp /usr/bin/make -C doc clean make[2]: Entering directory '/<>/doc' rm -rf reference/*.rst cd examples_built && rm -rf *.py *.rst *.png fig rm -rf _build/* rm *-stamp rm: cannot remove '*-stamp': No such file or directory Makefile:31: recipe for target 'clean' failed make[2]: [clean] Error 1 (ignored) make[2]: Leaving directory '/<>/doc' dh_clean dh_clean: Compatibility levels before 9 are deprecated (level 7 in use) make[1]: Leaving directory '/<>' debian/rules build dh --buildsystem=python_distutils build --with python2 dh: Compatibility levels before 9 are deprecated (level 7 in use) dh_update_autotools_config -O--buildsystem=python_distutils dh_auto_configure -O--buildsystem=python_distutils dh_auto_configure: Compatibility levels before 9 are deprecated (level 7 in use) debian/rules override_dh_auto_build make[1]: Entering directory '/<>' echo "D: HERE" D: HERE echo "2" | grep -q '^3' && PY=3 || PY= ; \ CYTHONVER=$(dpkg -l cython$PY 2>/dev/null | awk '/^ii/{print $3;}' || echo 0); \ dpkg --compare-versions "$CYTHONVER" lt "0.25.1" && { \ echo "I: Using pre-Cython-ed files for Python 2"; \ cd debian/cythonized-files$PY/ ; \ find . -name *.c | while read f; do cp $f ../../$f; done; \ cp pyx-stamps ../../; } || : dh_auto_build dh_auto_build: Compatibility levels before 9 are deprecated (level 7 in use) python setup.py build --force running build running build_py creating build creating build/lib.linux-x86_64-2.7 creating build/lib.linux-x86_64-2.7/dipy copying dipy/info.py -> build/lib.linux-x86_64-2.7/dipy copying dipy/pkg_info.py -> build/lib.linux-x86_64-2.7/dipy copying dipy/__init__.py -> build/lib.linux-x86_64-2.7/dipy creating build/lib.linux-x86_64-2.7/dipy/tests copying dipy/tests/scriptrunner.py -> build/lib.linux-x86_64-2.7/dipy/tests copying dipy/tests/test_scripts.py -> build/lib.linux-x86_64-2.7/dipy/tests copying dipy/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/tests creating build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/metrics.py -> build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/reslice.py -> build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/imwarp.py -> build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/streamlinear.py -> build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/scalespace.py -> build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/imaffine.py -> build/lib.linux-x86_64-2.7/dipy/align copying dipy/align/__init__.py -> build/lib.linux-x86_64-2.7/dipy/align creating build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_crosscorr.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_vector_fields.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_transforms.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_reslice.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_streamlinear.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_imwarp.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_sumsqdiff.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_imaffine.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_parzenhist.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_scalespace.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_metrics.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_expectmax.py -> build/lib.linux-x86_64-2.7/dipy/align/tests copying dipy/align/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/align/tests creating build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/ndindex.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/histeq.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/rng.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/graph.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/sphere.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/wavelet.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/profile.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/geometry.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/gradients.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/sphere_stats.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/onetime.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/subdivide_octahedron.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/optimize.py -> build/lib.linux-x86_64-2.7/dipy/core copying dipy/core/__init__.py -> build/lib.linux-x86_64-2.7/dipy/core creating build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_gradients.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_subdivide_octahedron.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_geometry.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_optimize.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_graph.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_ndindex.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_sphere.py -> build/lib.linux-x86_64-2.7/dipy/core/tests copying dipy/core/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/core/tests creating build/lib.linux-x86_64-2.7/dipy/direction copying dipy/direction/peaks.py -> build/lib.linux-x86_64-2.7/dipy/direction copying dipy/direction/probabilistic_direction_getter.py -> build/lib.linux-x86_64-2.7/dipy/direction copying dipy/direction/__init__.py -> build/lib.linux-x86_64-2.7/dipy/direction creating build/lib.linux-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_peaks.py -> build/lib.linux-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_prob_direction_getter.py -> build/lib.linux-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/direction/tests creating build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/utils.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/metrics.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/life.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/eudx.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/_utils.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/streamline.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/learning.py -> build/lib.linux-x86_64-2.7/dipy/tracking copying dipy/tracking/__init__.py -> build/lib.linux-x86_64-2.7/dipy/tracking creating build/lib.linux-x86_64-2.7/dipy/tracking/local copying dipy/tracking/local/localtracking.py -> build/lib.linux-x86_64-2.7/dipy/tracking/local copying dipy/tracking/local/__init__.py -> build/lib.linux-x86_64-2.7/dipy/tracking/local creating build/lib.linux-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_tissue_classifier.py -> build/lib.linux-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_local_tracking.py -> build/lib.linux-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/tracking/local/tests creating build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_utils.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_learning.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_fbc.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_localtrack.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_streamline.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_metrics.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_life.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_distances.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_propagation.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_track_volumes.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/tracking/tests creating build/lib.linux-x86_64-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/bench_streamline.py -> build/lib.linux-x86_64-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/__init__.py -> build/lib.linux-x86_64-2.7/dipy/tracking/benchmarks creating build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/cache.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/peaks.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/dki_micro.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/interpolate.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/utils.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/cross_validation.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/shore.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/base.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/shm.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/gqi.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/sfm.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/dti.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/multi_voxel.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/ivim.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/csdeconv.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/fwdti.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/dsi.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/dki.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/odf.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/mapmri.py -> build/lib.linux-x86_64-2.7/dipy/reconst copying dipy/reconst/__init__.py -> build/lib.linux-x86_64-2.7/dipy/reconst creating build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_squash.py -> build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_peaks.py -> build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_vec_val_sum.py -> build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_bounding_box.py -> build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_csd.py -> build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/__init__.py -> build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks creating build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_metrics.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_odf.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_deconv.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_gqi.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dki_micro.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_ivim.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_multi_voxel.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_odf.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_fwdti.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cache.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_csdeconv.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_reco_utils.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shm.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peakdf.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dti.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_vec_val_vect.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dki.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_metrics.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_mapmri.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cross_validation.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peak_finding.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_interpolate.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_sfm.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/reconst/tests creating build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/peaks.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/utils.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/image.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/trackvis.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/pickles.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/gradients.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/bvectxt.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/vtk.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/dpy.py -> build/lib.linux-x86_64-2.7/dipy/io copying dipy/io/__init__.py -> build/lib.linux-x86_64-2.7/dipy/io creating build/lib.linux-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_bvectxt.py -> build/lib.linux-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_dpy.py -> build/lib.linux-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_io_peaks.py -> build/lib.linux-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_io.py -> build/lib.linux-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_io_gradients.py -> build/lib.linux-x86_64-2.7/dipy/io/tests copying dipy/io/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/io/tests creating build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/window.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/colormap.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/utils.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/regtools.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/ui.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/widget.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/fvtk.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/projections.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/interactor.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/actor.py -> build/lib.linux-x86_64-2.7/dipy/viz copying dipy/viz/__init__.py -> build/lib.linux-x86_64-2.7/dipy/viz creating build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_utils.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_widgets.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_ui.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_actors.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_fvtk.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_window.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_regtools.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_interactor.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/viz/tests creating build/lib.linux-x86_64-2.7/dipy/testing copying dipy/testing/decorators.py -> build/lib.linux-x86_64-2.7/dipy/testing copying dipy/testing/spherepoints.py -> build/lib.linux-x86_64-2.7/dipy/testing copying dipy/testing/memory.py -> build/lib.linux-x86_64-2.7/dipy/testing copying dipy/testing/__init__.py -> build/lib.linux-x86_64-2.7/dipy/testing creating build/lib.linux-x86_64-2.7/dipy/testing/tests copying dipy/testing/tests/test_memory.py -> build/lib.linux-x86_64-2.7/dipy/testing/tests copying dipy/testing/tests/test_decorators.py -> build/lib.linux-x86_64-2.7/dipy/testing/tests copying dipy/testing/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/testing/tests creating build/lib.linux-x86_64-2.7/dipy/boots copying dipy/boots/resampling.py -> build/lib.linux-x86_64-2.7/dipy/boots copying dipy/boots/__init__.py -> build/lib.linux-x86_64-2.7/dipy/boots creating build/lib.linux-x86_64-2.7/dipy/data copying dipy/data/fetcher.py -> build/lib.linux-x86_64-2.7/dipy/data copying dipy/data/__init__.py -> build/lib.linux-x86_64-2.7/dipy/data creating build/lib.linux-x86_64-2.7/dipy/utils copying dipy/utils/_importlib.py -> build/lib.linux-x86_64-2.7/dipy/utils copying dipy/utils/arrfuncs.py -> build/lib.linux-x86_64-2.7/dipy/utils copying dipy/utils/optpkg.py -> build/lib.linux-x86_64-2.7/dipy/utils copying dipy/utils/tripwire.py -> build/lib.linux-x86_64-2.7/dipy/utils copying dipy/utils/six.py -> build/lib.linux-x86_64-2.7/dipy/utils copying dipy/utils/__init__.py -> build/lib.linux-x86_64-2.7/dipy/utils package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) creating build/lib.linux-x86_64-2.7/dipy/data/tests copying dipy/data/tests/test_data.py -> build/lib.linux-x86_64-2.7/dipy/data/tests copying dipy/data/tests/test_fetcher.py -> build/lib.linux-x86_64-2.7/dipy/data/tests creating build/lib.linux-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/test_tripwire.py -> build/lib.linux-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/test_arrfuncs.py -> build/lib.linux-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/test_omp.py -> build/lib.linux-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/utils/tests creating build/lib.linux-x86_64-2.7/dipy/fixes copying dipy/fixes/argparse.py -> build/lib.linux-x86_64-2.7/dipy/fixes copying dipy/fixes/scipy.py -> build/lib.linux-x86_64-2.7/dipy/fixes copying dipy/fixes/__init__.py -> build/lib.linux-x86_64-2.7/dipy/fixes creating build/lib.linux-x86_64-2.7/dipy/external copying dipy/external/fsl.py -> build/lib.linux-x86_64-2.7/dipy/external copying dipy/external/__init__.py -> build/lib.linux-x86_64-2.7/dipy/external creating build/lib.linux-x86_64-2.7/dipy/external/tests copying dipy/external/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/external/tests creating build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/mask.py -> build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/quickbundles.py -> build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/tissue.py -> build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/threshold.py -> build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/clustering.py -> build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/metric.py -> build/lib.linux-x86_64-2.7/dipy/segment copying dipy/segment/__init__.py -> build/lib.linux-x86_64-2.7/dipy/segment creating build/lib.linux-x86_64-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/bench_quickbundles.py -> build/lib.linux-x86_64-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/__init__.py -> build/lib.linux-x86_64-2.7/dipy/segment/benchmarks creating build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_metric.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_quickbundles.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_qb.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_mask.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_clustering.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_feature.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_mrf.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_adjustment.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/segment/tests creating build/lib.linux-x86_64-2.7/dipy/sims copying dipy/sims/voxel.py -> build/lib.linux-x86_64-2.7/dipy/sims copying dipy/sims/phantom.py -> build/lib.linux-x86_64-2.7/dipy/sims copying dipy/sims/__init__.py -> build/lib.linux-x86_64-2.7/dipy/sims creating build/lib.linux-x86_64-2.7/dipy/sims/tests copying dipy/sims/tests/test_voxel.py -> build/lib.linux-x86_64-2.7/dipy/sims/tests copying dipy/sims/tests/test_phantom.py -> build/lib.linux-x86_64-2.7/dipy/sims/tests copying dipy/sims/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/sims/tests creating build/lib.linux-x86_64-2.7/dipy/denoise copying dipy/denoise/non_local_means.py -> build/lib.linux-x86_64-2.7/dipy/denoise copying dipy/denoise/nlmeans.py -> build/lib.linux-x86_64-2.7/dipy/denoise copying dipy/denoise/localpca.py -> build/lib.linux-x86_64-2.7/dipy/denoise copying dipy/denoise/noise_estimate.py -> build/lib.linux-x86_64-2.7/dipy/denoise copying dipy/denoise/adaptive_soft_matching.py -> build/lib.linux-x86_64-2.7/dipy/denoise copying dipy/denoise/__init__.py -> build/lib.linux-x86_64-2.7/dipy/denoise creating build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_kernel.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_noise_estimate.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_lpca.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_ascm.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_denoise.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_non_local_means.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_nlmeans.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/denoise/tests creating build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/flow_runner.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/multi_io.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/mask.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/segment.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/docstring_parser.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/base.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/workflow.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/reconst.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/combined_workflow.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/denoise.py -> build/lib.linux-x86_64-2.7/dipy/workflows copying dipy/workflows/__init__.py -> build/lib.linux-x86_64-2.7/dipy/workflows creating build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_segment.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_workflow.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_csa_csd.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_masking.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_dti.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/workflow_tests_utils.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_iap.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_docstring_parser.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/__init__.py -> build/lib.linux-x86_64-2.7/dipy/workflows/tests creating build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_custom_interactor_style_events.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/ScannerVectors_GQI101.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_disk_slider_2d.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_101D.bval -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/C.npy -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/fib0.pkl.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/S0_10slices.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/func_discrete.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/dsi515_b_table.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_button_panel.pkl -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/func_coef.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/eg_3voxels.pkl -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_textbox.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/gtab_isbi2013_2shell.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bvec -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/grad_514.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_362.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/life_matlab_rmse.npy -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/sphere_grad.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_25.bval -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_724.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bval -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.bvals.npy -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_642.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_101D.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/fib2.pkl.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_101D.bvec -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_disk_slider_2d.pkl -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.gradients.npy -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/aniso_vox.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/C1.pkl.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/circle.npy -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/repulsion100.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/fib1.pkl.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_line_slider_2d.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_file_select_menu_2d.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_textbox.pkl -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/repulsion724.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/dsi4169_b_table.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_25.bvec -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/C3.pkl.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/t1_coronal_slice.npy -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_button_and_slider_widgets.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/gtab_3shell.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/dipy_colormaps.json -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/tracks300.trk -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/gtab_taiwan_dsi.txt -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_file_select_menu_2d.pkl -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/cb_2.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_line_slider_2d.pkl -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/life_matlab_weights.npy -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_piesno.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_25.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/repulsion200.npz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_button_panel.log.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/ascm_out_test.nii.gz -> build/lib.linux-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.nii -> build/lib.linux-x86_64-2.7/dipy/data/files package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) running build_ext x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o -msse2 -mfpmath=sse x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security test.o -o libtestlib.so x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security test.o -o libtestlib.so -fopenmp cythoning dipy/reconst/peak_direction_getter.pyx to dipy/reconst/peak_direction_getter.c warning: dipy/reconst/peak_direction_getter.pyx:57:4: Overriding cdef method with def method. building 'dipy.reconst.peak_direction_getter' extension creating build/temp.linux-x86_64-2.7 creating build/temp.linux-x86_64-2.7/dipy creating build/temp.linux-x86_64-2.7/dipy/reconst x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/reconst/peak_direction_getter.c -o build/temp.linux-x86_64-2.7/dipy/reconst/peak_direction_getter.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/peak_direction_getter.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ dipy/reconst/peak_direction_getter.c: In function ‘__pyx_pw_4dipy_7reconst_21peak_direction_getter_30PeaksAndMetricsDirectionGetter_5initial_direction’: dipy/reconst/peak_direction_getter.c:3399:3: warning: ‘__pyx_v_numpeaks’ may be used uninitialized in this function [-Wmaybe-uninitialized] for (__pyx_t_16 = 0; __pyx_t_16 < __pyx_t_5; __pyx_t_16+=1) { ^~~ dipy/reconst/peak_direction_getter.c:3102:12: note: ‘__pyx_v_numpeaks’ was declared here npy_intp __pyx_v_numpeaks; ^~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/reconst/peak_direction_getter.o -o build/lib.linux-x86_64-2.7/dipy/reconst/peak_direction_getter.so -fopenmp cythoning dipy/reconst/recspeed.pyx to dipy/reconst/recspeed.c warning: dipy/reconst/recspeed.pyx:570:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/reconst/recspeed.pyx:570:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/reconst/recspeed.pyx:570:59: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.reconst.recspeed' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/reconst/recspeed.c -o build/temp.linux-x86_64-2.7/dipy/reconst/recspeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/recspeed.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/reconst/recspeed.o -o build/lib.linux-x86_64-2.7/dipy/reconst/recspeed.so -fopenmp cythoning dipy/reconst/vec_val_sum.pyx to dipy/reconst/vec_val_sum.c building 'dipy.reconst.vec_val_sum' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/reconst/vec_val_sum.c -o build/temp.linux-x86_64-2.7/dipy/reconst/vec_val_sum.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/vec_val_sum.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/reconst/vec_val_sum.o -o build/lib.linux-x86_64-2.7/dipy/reconst/vec_val_sum.so -fopenmp cythoning dipy/reconst/quick_squash.pyx to dipy/reconst/quick_squash.c building 'dipy.reconst.quick_squash' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/reconst/quick_squash.c -o build/temp.linux-x86_64-2.7/dipy/reconst/quick_squash.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/reconst/quick_squash.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/reconst/quick_squash.o -o build/lib.linux-x86_64-2.7/dipy/reconst/quick_squash.so -fopenmp cythoning dipy/tracking/distances.pyx to dipy/tracking/distances.c warning: dipy/tracking/distances.pyx:246:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:246:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:246:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:246:53: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:247:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:247:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:248:17: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:248:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:248:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:248:41: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:249:17: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:249:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:249:32: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:416:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:416:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:416:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:512:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:512:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:512:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:577:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:577:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:577:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:615:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:615:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:653:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:653:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:741:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:741:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:809:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:809:33: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:36: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:42: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:49: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:56: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:894:63: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:30: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:36: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:983:43: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1048:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1048:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1048:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1052:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1052:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1175:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1175:19: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1175:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1175:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1203:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1203:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1203:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1282:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1282:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1282:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1299:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1299:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1299:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1535:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1535:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1535:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1536:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1978:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:1978:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2030:15: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2030:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/distances.pyx:2030:25: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.tracking.distances' extension creating build/temp.linux-x86_64-2.7/dipy/tracking x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/distances.c -o build/temp.linux-x86_64-2.7/dipy/tracking/distances.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/distances.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ dipy/tracking/distances.c: In function ‘__pyx_f_4dipy_8tracking_9distances_czhang’: dipy/tracking/distances.c:8676:10: warning: ‘__pyx_v_dist_val’ may be used uninitialized in this function [-Wmaybe-uninitialized] return __pyx_r; ^~~~~~~ dipy/tracking/distances.c: In function ‘__pyx_pf_4dipy_8tracking_9distances_14cut_plane.isra.39’: dipy/tracking/distances.c:3157:59: warning: ‘*((void *)&__pyx_v_normal+8)’ may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_v_ip = (__pyx_v_ip + ((__pyx_v_vec1[__pyx_v_i]) * (__pyx_v_vec2[__pyx_v_i]))); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/distances.c:4543:9: note: ‘*((void *)&__pyx_v_normal+8)’ was declared here float __pyx_v_normal[3]; ^~~~~~~~~~~~~~ dipy/tracking/distances.c:3157:59: warning: ‘*((void *)&__pyx_v_normal+4)’ may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_v_ip = (__pyx_v_ip + ((__pyx_v_vec1[__pyx_v_i]) * (__pyx_v_vec2[__pyx_v_i]))); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/distances.c:4543:9: note: ‘*((void *)&__pyx_v_normal+4)’ was declared here float __pyx_v_normal[3]; ^~~~~~~~~~~~~~ dipy/tracking/distances.c:3157:59: warning: ‘__pyx_v_normal’ may be used uninitialized in this function [-Wmaybe-uninitialized] __pyx_v_ip = (__pyx_v_ip + ((__pyx_v_vec1[__pyx_v_i]) * (__pyx_v_vec2[__pyx_v_i]))); ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ dipy/tracking/distances.c:4543:9: note: ‘__pyx_v_normal’ was declared here float __pyx_v_normal[3]; ^~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/tracking/distances.o -o build/lib.linux-x86_64-2.7/dipy/tracking/distances.so -fopenmp cythoning dipy/tracking/streamlinespeed.pyx to dipy/tracking/streamlinespeed.c building 'dipy.tracking.streamlinespeed' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/streamlinespeed.c -o build/temp.linux-x86_64-2.7/dipy/tracking/streamlinespeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/streamlinespeed.c:486: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/tracking/streamlinespeed.o -o build/lib.linux-x86_64-2.7/dipy/tracking/streamlinespeed.so -fopenmp cythoning dipy/tracking/local/localtrack.pyx to dipy/tracking/local/localtrack.c warning: dipy/tracking/local/localtrack.pyx:153:20: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/local/localtrack.pyx:153:28: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/local/localtrack.pyx:153:35: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/local/localtrack.pyx:153:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.tracking.local.localtrack' extension creating build/temp.linux-x86_64-2.7/dipy/tracking/local x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/localtrack.c -o build/temp.linux-x86_64-2.7/dipy/tracking/local/localtrack.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/localtrack.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/tracking/local/localtrack.o -o build/lib.linux-x86_64-2.7/dipy/tracking/local/localtrack.so -fopenmp cythoning dipy/tracking/local/direction_getter.pyx to dipy/tracking/local/direction_getter.c building 'dipy.tracking.local.direction_getter' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/direction_getter.c -o build/temp.linux-x86_64-2.7/dipy/tracking/local/direction_getter.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/direction_getter.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/tracking/local/direction_getter.o -o build/lib.linux-x86_64-2.7/dipy/tracking/local/direction_getter.so -fopenmp cythoning dipy/tracking/local/tissue_classifier.pyx to dipy/tracking/local/tissue_classifier.c building 'dipy.tracking.local.tissue_classifier' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/tissue_classifier.c -o build/temp.linux-x86_64-2.7/dipy/tracking/local/tissue_classifier.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/tissue_classifier.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/tracking/local/tissue_classifier.o -o build/lib.linux-x86_64-2.7/dipy/tracking/local/tissue_classifier.so -fopenmp cythoning dipy/tracking/local/interpolation.pyx to dipy/tracking/local/interpolation.c building 'dipy.tracking.local.interpolation' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/local/interpolation.c -o build/temp.linux-x86_64-2.7/dipy/tracking/local/interpolation.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/local/interpolation.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/tracking/local/interpolation.o -o build/lib.linux-x86_64-2.7/dipy/tracking/local/interpolation.so -fopenmp cythoning dipy/tracking/vox2track.pyx to dipy/tracking/vox2track.c building 'dipy.tracking.vox2track' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/vox2track.c -o build/temp.linux-x86_64-2.7/dipy/tracking/vox2track.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/vox2track.c:487: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/tracking/vox2track.o -o build/lib.linux-x86_64-2.7/dipy/tracking/vox2track.so -fopenmp cythoning dipy/tracking/propspeed.pyx to dipy/tracking/propspeed.c warning: dipy/tracking/propspeed.pyx:134:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:134:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:135:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:18: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:173:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:16: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:306:45: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:307:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:307:35: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:370:26: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:24: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:46: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/tracking/propspeed.pyx:437:54: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.tracking.propspeed' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/propspeed.c -o build/temp.linux-x86_64-2.7/dipy/tracking/propspeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/propspeed.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/tracking/propspeed.o -o build/lib.linux-x86_64-2.7/dipy/tracking/propspeed.so -fopenmp cythoning dipy/tracking/fbcmeasures.pyx to dipy/tracking/fbcmeasures.c building 'dipy.tracking.fbcmeasures' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/tracking/fbcmeasures.c -o build/temp.linux-x86_64-2.7/dipy/tracking/fbcmeasures.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/tracking/fbcmeasures.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/tracking/fbcmeasures.o -o build/lib.linux-x86_64-2.7/dipy/tracking/fbcmeasures.so -fopenmp cythoning dipy/segment/cythonutils.pyx to dipy/segment/cythonutils.c building 'dipy.segment.cythonutils' extension creating build/temp.linux-x86_64-2.7/dipy/segment x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/cythonutils.c -o build/temp.linux-x86_64-2.7/dipy/segment/cythonutils.o -msse2 -mfpmath=sse -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/segment/cythonutils.o -o build/lib.linux-x86_64-2.7/dipy/segment/cythonutils.so -fopenmp cythoning dipy/segment/featurespeed.pyx to dipy/segment/featurespeed.c building 'dipy.segment.featurespeed' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/featurespeed.c -o build/temp.linux-x86_64-2.7/dipy/segment/featurespeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/featurespeed.c:486: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ dipy/segment/featurespeed.c: In function ‘__pyx_f_4dipy_7segment_12featurespeed_19CenterOfMassFeature_c_infer_shape’: dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[2]’ is used uninitialized in this function [-Wuninitialized] return __pyx_r; ^~~~~~~ dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[3]’ is used uninitialized in this function [-Wuninitialized] dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[4]’ is used uninitialized in this function [-Wuninitialized] dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[5]’ is used uninitialized in this function [-Wuninitialized] dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[6]’ is used uninitialized in this function [-Wuninitialized] dipy/segment/featurespeed.c: In function ‘__pyx_f_4dipy_7segment_12featurespeed_16ArcLengthFeature_c_infer_shape’: dipy/segment/featurespeed.c:7676:10: warning: ‘__pyx_v_shape.dims[2]’ is used uninitialized in this function [-Wuninitialized] return __pyx_r; ^~~~~~~ dipy/segment/featurespeed.c:7676:10: warning: ‘__pyx_v_shape.dims[3]’ is used uninitialized in this function [-Wuninitialized] dipy/segment/featurespeed.c:7676:10: warning: ‘__pyx_v_shape.dims[4]’ is used uninitialized in this function [-Wuninitialized] dipy/segment/featurespeed.c:7676:10: warning: ‘__pyx_v_shape.dims[5]’ is used uninitialized in this function [-Wuninitialized] dipy/segment/featurespeed.c:7676:10: warning: ‘__pyx_v_shape.dims[6]’ is used uninitialized in this function [-Wuninitialized] dipy/segment/featurespeed.c: In function ‘__pyx_f_4dipy_7segment_12featurespeed_15MidpointFeature_c_infer_shape’: dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[2]’ is used uninitialized in this function [-Wuninitialized] return __pyx_r; ^~~~~~~ dipy/segment/featurespeed.c:6526:53: note: ‘__pyx_v_shape.dims[2]’ was declared here struct __pyx_t_4dipy_7segment_11cythonutils_Shape __pyx_v_shape; ^~~~~~~~~~~~~ dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[3]’ is used uninitialized in this function [-Wuninitialized] return __pyx_r; ^~~~~~~ dipy/segment/featurespeed.c:6526:53: note: ‘__pyx_v_shape.dims[3]’ was declared here struct __pyx_t_4dipy_7segment_11cythonutils_Shape __pyx_v_shape; ^~~~~~~~~~~~~ dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[4]’ is used uninitialized in this function [-Wuninitialized] return __pyx_r; ^~~~~~~ dipy/segment/featurespeed.c:6526:53: note: ‘__pyx_v_shape.dims[4]’ was declared here struct __pyx_t_4dipy_7segment_11cythonutils_Shape __pyx_v_shape; ^~~~~~~~~~~~~ dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[5]’ is used uninitialized in this function [-Wuninitialized] return __pyx_r; ^~~~~~~ dipy/segment/featurespeed.c:6526:53: note: ‘__pyx_v_shape.dims[5]’ was declared here struct __pyx_t_4dipy_7segment_11cythonutils_Shape __pyx_v_shape; ^~~~~~~~~~~~~ dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[6]’ is used uninitialized in this function [-Wuninitialized] return __pyx_r; ^~~~~~~ dipy/segment/featurespeed.c:6526:53: note: ‘__pyx_v_shape.dims[6]’ was declared here struct __pyx_t_4dipy_7segment_11cythonutils_Shape __pyx_v_shape; ^~~~~~~~~~~~~ dipy/segment/featurespeed.c: In function ‘__pyx_f_4dipy_7segment_12featurespeed_24VectorOfEndpointsFeature_c_infer_shape’: dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[2]’ is used uninitialized in this function [-Wuninitialized] return __pyx_r; ^~~~~~~ dipy/segment/featurespeed.c:6526:53: note: ‘__pyx_v_shape.dims[2]’ was declared here struct __pyx_t_4dipy_7segment_11cythonutils_Shape __pyx_v_shape; ^~~~~~~~~~~~~ dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[3]’ is used uninitialized in this function [-Wuninitialized] return __pyx_r; ^~~~~~~ dipy/segment/featurespeed.c:6526:53: note: ‘__pyx_v_shape.dims[3]’ was declared here struct __pyx_t_4dipy_7segment_11cythonutils_Shape __pyx_v_shape; ^~~~~~~~~~~~~ dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[4]’ is used uninitialized in this function [-Wuninitialized] return __pyx_r; ^~~~~~~ dipy/segment/featurespeed.c:6526:53: note: ‘__pyx_v_shape.dims[4]’ was declared here struct __pyx_t_4dipy_7segment_11cythonutils_Shape __pyx_v_shape; ^~~~~~~~~~~~~ dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[5]’ is used uninitialized in this function [-Wuninitialized] return __pyx_r; ^~~~~~~ dipy/segment/featurespeed.c:6526:53: note: ‘__pyx_v_shape.dims[5]’ was declared here struct __pyx_t_4dipy_7segment_11cythonutils_Shape __pyx_v_shape; ^~~~~~~~~~~~~ dipy/segment/featurespeed.c:6585:10: warning: ‘__pyx_v_shape.dims[6]’ is used uninitialized in this function [-Wuninitialized] return __pyx_r; ^~~~~~~ dipy/segment/featurespeed.c:6526:53: note: ‘__pyx_v_shape.dims[6]’ was declared here struct __pyx_t_4dipy_7segment_11cythonutils_Shape __pyx_v_shape; ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/segment/featurespeed.o -o build/lib.linux-x86_64-2.7/dipy/segment/featurespeed.so -fopenmp cythoning dipy/segment/metricspeed.pyx to dipy/segment/metricspeed.c building 'dipy.segment.metricspeed' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/metricspeed.c -o build/temp.linux-x86_64-2.7/dipy/segment/metricspeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/metricspeed.c:486: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/segment/metricspeed.o -o build/lib.linux-x86_64-2.7/dipy/segment/metricspeed.so -fopenmp cythoning dipy/segment/clusteringspeed.pyx to dipy/segment/clusteringspeed.c building 'dipy.segment.clusteringspeed' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/clusteringspeed.c -o build/temp.linux-x86_64-2.7/dipy/segment/clusteringspeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/clusteringspeed.c:486: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/segment/clusteringspeed.o -o build/lib.linux-x86_64-2.7/dipy/segment/clusteringspeed.so -fopenmp cythoning dipy/segment/clustering_algorithms.pyx to dipy/segment/clustering_algorithms.c building 'dipy.segment.clustering_algorithms' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/clustering_algorithms.c -o build/temp.linux-x86_64-2.7/dipy/segment/clustering_algorithms.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/clustering_algorithms.c:486: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/segment/clustering_algorithms.o -o build/lib.linux-x86_64-2.7/dipy/segment/clustering_algorithms.so -fopenmp cythoning dipy/segment/mrf.pyx to dipy/segment/mrf.c building 'dipy.segment.mrf' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/segment/mrf.c -o build/temp.linux-x86_64-2.7/dipy/segment/mrf.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/segment/mrf.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/segment/mrf.o -o build/lib.linux-x86_64-2.7/dipy/segment/mrf.so -fopenmp cythoning dipy/denoise/denspeed.pyx to dipy/denoise/denspeed.c building 'dipy.denoise.denspeed' extension creating build/temp.linux-x86_64-2.7/dipy/denoise x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/denspeed.c -o build/temp.linux-x86_64-2.7/dipy/denoise/denspeed.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/denspeed.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/denoise/denspeed.o -o build/lib.linux-x86_64-2.7/dipy/denoise/denspeed.so -fopenmp cythoning dipy/denoise/pca_noise_estimate.pyx to dipy/denoise/pca_noise_estimate.c building 'dipy.denoise.pca_noise_estimate' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/pca_noise_estimate.c -o build/temp.linux-x86_64-2.7/dipy/denoise/pca_noise_estimate.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/pca_noise_estimate.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/denoise/pca_noise_estimate.o -o build/lib.linux-x86_64-2.7/dipy/denoise/pca_noise_estimate.so -fopenmp cythoning dipy/denoise/nlmeans_block.pyx to dipy/denoise/nlmeans_block.c building 'dipy.denoise.nlmeans_block' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/nlmeans_block.c -o build/temp.linux-x86_64-2.7/dipy/denoise/nlmeans_block.o -msse2 -mfpmath=sse -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/denoise/nlmeans_block.o -o build/lib.linux-x86_64-2.7/dipy/denoise/nlmeans_block.so -fopenmp cythoning dipy/denoise/enhancement_kernel.pyx to dipy/denoise/enhancement_kernel.c building 'dipy.denoise.enhancement_kernel' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/enhancement_kernel.c -o build/temp.linux-x86_64-2.7/dipy/denoise/enhancement_kernel.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/enhancement_kernel.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/denoise/enhancement_kernel.o -o build/lib.linux-x86_64-2.7/dipy/denoise/enhancement_kernel.so -fopenmp cythoning dipy/denoise/shift_twist_convolution.pyx to dipy/denoise/shift_twist_convolution.c building 'dipy.denoise.shift_twist_convolution' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/denoise/shift_twist_convolution.c -o build/temp.linux-x86_64-2.7/dipy/denoise/shift_twist_convolution.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/denoise/shift_twist_convolution.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/denoise/shift_twist_convolution.o -o build/lib.linux-x86_64-2.7/dipy/denoise/shift_twist_convolution.so -fopenmp cythoning dipy/align/vector_fields.pyx to dipy/align/vector_fields.c building 'dipy.align.vector_fields' extension creating build/temp.linux-x86_64-2.7/dipy/align x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/vector_fields.c -o build/temp.linux-x86_64-2.7/dipy/align/vector_fields.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/vector_fields.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/align/vector_fields.o -o build/lib.linux-x86_64-2.7/dipy/align/vector_fields.so -fopenmp cythoning dipy/align/sumsqdiff.pyx to dipy/align/sumsqdiff.c building 'dipy.align.sumsqdiff' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/sumsqdiff.c -o build/temp.linux-x86_64-2.7/dipy/align/sumsqdiff.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/sumsqdiff.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/align/sumsqdiff.o -o build/lib.linux-x86_64-2.7/dipy/align/sumsqdiff.so -fopenmp cythoning dipy/align/expectmax.pyx to dipy/align/expectmax.c building 'dipy.align.expectmax' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/expectmax.c -o build/temp.linux-x86_64-2.7/dipy/align/expectmax.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/expectmax.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/align/expectmax.o -o build/lib.linux-x86_64-2.7/dipy/align/expectmax.so -fopenmp cythoning dipy/align/crosscorr.pyx to dipy/align/crosscorr.c building 'dipy.align.crosscorr' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/crosscorr.c -o build/temp.linux-x86_64-2.7/dipy/align/crosscorr.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/crosscorr.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/align/crosscorr.o -o build/lib.linux-x86_64-2.7/dipy/align/crosscorr.so -fopenmp cythoning dipy/align/bundlemin.pyx to dipy/align/bundlemin.c warning: dipy/align/bundlemin.pyx:288:22: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/align/bundlemin.pyx:288:31: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: dipy/align/bundlemin.pyx:288:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'dipy.align.bundlemin' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/bundlemin.c -o build/temp.linux-x86_64-2.7/dipy/align/bundlemin.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/bundlemin.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/align/bundlemin.o -o build/lib.linux-x86_64-2.7/dipy/align/bundlemin.so -fopenmp cythoning dipy/align/transforms.pyx to dipy/align/transforms.c building 'dipy.align.transforms' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/transforms.c -o build/temp.linux-x86_64-2.7/dipy/align/transforms.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/transforms.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/align/transforms.o -o build/lib.linux-x86_64-2.7/dipy/align/transforms.so -fopenmp cythoning dipy/align/parzenhist.pyx to dipy/align/parzenhist.c building 'dipy.align.parzenhist' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/align/parzenhist.c -o build/temp.linux-x86_64-2.7/dipy/align/parzenhist.o -msse2 -mfpmath=sse -fopenmp In file included from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1809:0, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/ndarrayobject.h:18, from /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from dipy/align/parzenhist.c:485: /usr/lib/python2.7/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/align/parzenhist.o -o build/lib.linux-x86_64-2.7/dipy/align/parzenhist.so -fopenmp cythoning dipy/utils/omp.pyx to dipy/utils/omp.c building 'dipy.utils.omp' extension creating build/temp.linux-x86_64-2.7/dipy/utils x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Isrc -I/usr/lib/python2.7/dist-packages/numpy/core/include -Ibuild -I/usr/include/python2.7 -c dipy/utils/omp.c -o build/temp.linux-x86_64-2.7/dipy/utils/omp.o -msse2 -mfpmath=sse -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security build/temp.linux-x86_64-2.7/dipy/utils/omp.o -o build/lib.linux-x86_64-2.7/dipy/utils/omp.so -fopenmp running build_scripts creating build/scripts-2.7 copying and adjusting bin/dipy_reconst_csd -> build/scripts-2.7 copying and adjusting bin/dipy_reconst_csa -> build/scripts-2.7 copying and adjusting bin/dipy_mask -> build/scripts-2.7 copying and adjusting bin/dipy_median_otsu -> build/scripts-2.7 copying and adjusting bin/dipy_reconst_dti_restore -> build/scripts-2.7 copying and adjusting bin/dipy_reconst_dti -> build/scripts-2.7 copying and adjusting bin/dipy_nlmeans -> build/scripts-2.7 changing mode of build/scripts-2.7/dipy_reconst_csd from 664 to 775 changing mode of build/scripts-2.7/dipy_reconst_csa from 664 to 775 changing mode of build/scripts-2.7/dipy_mask from 664 to 775 changing mode of build/scripts-2.7/dipy_median_otsu from 664 to 775 changing mode of build/scripts-2.7/dipy_reconst_dti_restore from 664 to 775 changing mode of build/scripts-2.7/dipy_reconst_dti from 664 to 775 changing mode of build/scripts-2.7/dipy_nlmeans from 664 to 775 echo "backend : Agg" >| build/matplotlibrc make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' : # Do not test just after build, lets install and then test make[1]: Leaving directory '/<>' fakeroot debian/rules binary dh --buildsystem=python_distutils binary --with python2 dh: Compatibility levels before 9 are deprecated (level 7 in use) dh_testroot -O--buildsystem=python_distutils dh_prep -O--buildsystem=python_distutils debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install dh_auto_install: Compatibility levels before 9 are deprecated (level 7 in use) python setup.py install --force --root=/<>/debian/tmp --no-compile -O0 --install-layout=deb running install running build running build_py package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) running build_ext x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o -msse2 -mfpmath=sse x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security test.o -o libtestlib.so x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/python2.7 -c test.c -o test.o -fopenmp x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-l1RrwO/python2.7-2.7.14=. -fstack-protector-strong -Wformat -Werror=format-security test.o -o libtestlib.so -fopenmp skipping 'dipy/reconst/peak_direction_getter.c' Cython extension (up-to-date) skipping 'dipy/reconst/recspeed.c' Cython extension (up-to-date) skipping 'dipy/reconst/vec_val_sum.c' Cython extension (up-to-date) skipping 'dipy/reconst/quick_squash.c' Cython extension (up-to-date) skipping 'dipy/tracking/distances.c' Cython extension (up-to-date) skipping 'dipy/tracking/streamlinespeed.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/localtrack.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/direction_getter.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/tissue_classifier.c' Cython extension (up-to-date) skipping 'dipy/tracking/local/interpolation.c' Cython extension (up-to-date) skipping 'dipy/tracking/vox2track.c' Cython extension (up-to-date) skipping 'dipy/tracking/propspeed.c' Cython extension (up-to-date) skipping 'dipy/tracking/fbcmeasures.c' Cython extension (up-to-date) skipping 'dipy/segment/cythonutils.c' Cython extension (up-to-date) skipping 'dipy/segment/featurespeed.c' Cython extension (up-to-date) skipping 'dipy/segment/metricspeed.c' Cython extension (up-to-date) skipping 'dipy/segment/clusteringspeed.c' Cython extension (up-to-date) skipping 'dipy/segment/clustering_algorithms.c' Cython extension (up-to-date) skipping 'dipy/segment/mrf.c' Cython extension (up-to-date) skipping 'dipy/denoise/denspeed.c' Cython extension (up-to-date) skipping 'dipy/denoise/pca_noise_estimate.c' Cython extension (up-to-date) skipping 'dipy/denoise/nlmeans_block.c' Cython extension (up-to-date) skipping 'dipy/denoise/enhancement_kernel.c' Cython extension (up-to-date) skipping 'dipy/denoise/shift_twist_convolution.c' Cython extension (up-to-date) skipping 'dipy/align/vector_fields.c' Cython extension (up-to-date) skipping 'dipy/align/sumsqdiff.c' Cython extension (up-to-date) skipping 'dipy/align/expectmax.c' Cython extension (up-to-date) skipping 'dipy/align/crosscorr.c' Cython extension (up-to-date) skipping 'dipy/align/bundlemin.c' Cython extension (up-to-date) skipping 'dipy/align/transforms.c' Cython extension (up-to-date) skipping 'dipy/align/parzenhist.c' Cython extension (up-to-date) skipping 'dipy/utils/omp.c' Cython extension (up-to-date) running build_scripts running install_lib creating /<>/debian/tmp creating /<>/debian/tmp/usr creating /<>/debian/tmp/usr/lib creating /<>/debian/tmp/usr/lib/python2.7 creating /<>/debian/tmp/usr/lib/python2.7/dist-packages creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/utils/_importlib.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/utils/arrfuncs.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/utils/omp.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-x86_64-2.7/dipy/utils/tests/test_tripwire.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-x86_64-2.7/dipy/utils/tests/test_arrfuncs.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-x86_64-2.7/dipy/utils/tests/test_omp.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-x86_64-2.7/dipy/utils/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils/tests copying build/lib.linux-x86_64-2.7/dipy/utils/optpkg.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/utils/tripwire.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/utils/six.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/utils/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/utils copying build/lib.linux-x86_64-2.7/dipy/__config__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/pca_noise_estimate.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/nlmeans_block.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/non_local_means.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/nlmeans.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/localpca.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_kernel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_noise_estimate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_lpca.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_ascm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_denoise.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_non_local_means.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/test_nlmeans.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise/tests copying build/lib.linux-x86_64-2.7/dipy/denoise/enhancement_kernel.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/denspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/noise_estimate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/adaptive_soft_matching.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/shift_twist_convolution.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise copying build/lib.linux-x86_64-2.7/dipy/denoise/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/denoise creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/peak_direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/cache.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/dki_micro.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/interpolate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/quick_squash.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/cross_validation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/recspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/shore.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/base.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/vec_val_sum.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/shm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_dsi_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_shore_odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_dsi_deconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_gqi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_dki_micro.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_ivim.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_multi_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_fwdti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_cache.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_csdeconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_reco_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_shore.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_shm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_peakdf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_dsi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_dti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_vec_val_vect.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_dki.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_shore_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_mapmri.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_cross_validation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_peak_finding.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_interpolate.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/test_sfm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests copying build/lib.linux-x86_64-2.7/dipy/reconst/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/tests creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks/bench_squash.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks/bench_peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks/bench_vec_val_sum.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks/bench_bounding_box.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks/bench_csd.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/benchmarks copying build/lib.linux-x86_64-2.7/dipy/reconst/gqi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/sfm.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/dti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/multi_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/ivim.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/csdeconv.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/fwdti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/dsi.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/dki.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/odf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/mapmri.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst copying build/lib.linux-x86_64-2.7/dipy/reconst/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/image.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/trackvis.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/tests/test_bvectxt.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/tests/test_dpy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/tests/test_io_peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/tests/test_io.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/tests/test_io_gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io/tests copying build/lib.linux-x86_64-2.7/dipy/io/pickles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/bvectxt.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/vtk.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/dpy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io copying build/lib.linux-x86_64-2.7/dipy/io/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/io creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-x86_64-2.7/dipy/fixes/argparse.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-x86_64-2.7/dipy/fixes/scipy.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes copying build/lib.linux-x86_64-2.7/dipy/fixes/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/fixes creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/vox2track.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/life.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/streamlinespeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/distances.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/fbcmeasures.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-x86_64-2.7/dipy/tracking/local/tissue_classifier.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-x86_64-2.7/dipy/tracking/local/direction_getter.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-x86_64-2.7/dipy/tracking/local/localtracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-x86_64-2.7/dipy/tracking/local/localtrack.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/local/tests/test_tissue_classifier.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/local/tests/test_local_tracking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/local/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/local/interpolation.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local copying build/lib.linux-x86_64-2.7/dipy/tracking/local/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/local creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_learning.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_fbc.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_localtrack.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_life.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_distances.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_propagation.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/test_track_volumes.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests copying build/lib.linux-x86_64-2.7/dipy/tracking/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-x86_64-2.7/dipy/tracking/benchmarks/bench_streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-x86_64-2.7/dipy/tracking/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/benchmarks copying build/lib.linux-x86_64-2.7/dipy/tracking/eudx.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/streamline.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/propspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/learning.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/tracking/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking copying build/lib.linux-x86_64-2.7/dipy/info.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-x86_64-2.7/dipy/testing/decorators.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-x86_64-2.7/dipy/testing/spherepoints.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-x86_64-2.7/dipy/testing/tests/test_memory.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-x86_64-2.7/dipy/testing/tests/test_decorators.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-x86_64-2.7/dipy/testing/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing/tests copying build/lib.linux-x86_64-2.7/dipy/testing/memory.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing copying build/lib.linux-x86_64-2.7/dipy/testing/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/testing creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/vector_fields.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/bundlemin.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/sumsqdiff.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/parzenhist.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/reslice.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/imwarp.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_crosscorr.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_vector_fields.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_transforms.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_reslice.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_streamlinear.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_imwarp.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_sumsqdiff.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_imaffine.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_parzenhist.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_scalespace.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_metrics.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/test_expectmax.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align/tests copying build/lib.linux-x86_64-2.7/dipy/align/streamlinear.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/scalespace.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/expectmax.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/imaffine.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/crosscorr.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/transforms.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align copying build/lib.linux-x86_64-2.7/dipy/align/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/align creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data copying build/lib.linux-x86_64-2.7/dipy/data/fetcher.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/tests copying build/lib.linux-x86_64-2.7/dipy/data/tests/test_data.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/tests copying build/lib.linux-x86_64-2.7/dipy/data/tests/test_fetcher.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/tests creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_custom_interactor_style_events.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/ScannerVectors_GQI101.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_disk_slider_2d.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_101D.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/C.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/fib0.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/S0_10slices.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/func_discrete.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/dsi515_b_table.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_button_panel.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/func_coef.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/eg_3voxels.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_textbox.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/gtab_isbi2013_2shell.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/55dir_grad.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/grad_514.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/evenly_distributed_sphere_362.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/life_matlab_rmse.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/sphere_grad.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_25.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/evenly_distributed_sphere_724.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/55dir_grad.bval -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_64D.bvals.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/evenly_distributed_sphere_642.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_101D.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/fib2.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_101D.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_disk_slider_2d.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_64D.gradients.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/aniso_vox.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/C1.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/circle.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/repulsion100.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/fib1.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_line_slider_2d.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_file_select_menu_2d.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_textbox.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/repulsion724.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/dsi4169_b_table.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_25.bvec -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/C3.pkl.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/t1_coronal_slice.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_button_and_slider_widgets.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/gtab_3shell.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/dipy_colormaps.json -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/tracks300.trk -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/gtab_taiwan_dsi.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_file_select_menu_2d.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/cb_2.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_line_slider_2d.pkl -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/life_matlab_weights.npy -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_piesno.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_25.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/repulsion200.npz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/test_ui_button_panel.log.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/ascm_out_test.nii.gz -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/files/small_64D.nii -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data/files copying build/lib.linux-x86_64-2.7/dipy/data/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/data creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-x86_64-2.7/dipy/tests/scriptrunner.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-x86_64-2.7/dipy/tests/test_scripts.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests copying build/lib.linux-x86_64-2.7/dipy/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tests creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/flow_runner.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/multi_io.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/mask.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/segment.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/docstring_parser.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/base.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_segment.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_workflow.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_reconst_csa_csd.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_masking.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_reconst_dti.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/workflow_tests_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_iap.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/test_docstring_parser.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests copying build/lib.linux-x86_64-2.7/dipy/workflows/workflow.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/reconst.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/combined_workflow.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/denoise.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/workflows/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows copying build/lib.linux-x86_64-2.7/dipy/COMMIT_INFO.txt -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/ndindex.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/histeq.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/rng.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/graph.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/sphere.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/wavelet.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_subdivide_octahedron.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_geometry.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_optimize.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_graph.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_ndindex.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/test_sphere.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/tests copying build/lib.linux-x86_64-2.7/dipy/core/profile.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/geometry.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/gradients.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/sphere_stats.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/onetime.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/subdivide_octahedron.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/optimize.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core copying build/lib.linux-x86_64-2.7/dipy/core/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/mask.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/mrf.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/cythonutils.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/clusteringspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/tissue.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/clustering_algorithms.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/featurespeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_metric.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_qb.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_mask.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_clustering.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_feature.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_mrf.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/test_adjustment.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests copying build/lib.linux-x86_64-2.7/dipy/segment/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/tests creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-x86_64-2.7/dipy/segment/benchmarks/bench_quickbundles.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-x86_64-2.7/dipy/segment/benchmarks/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/benchmarks copying build/lib.linux-x86_64-2.7/dipy/segment/metricspeed.so -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/threshold.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/clustering.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/metric.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment copying build/lib.linux-x86_64-2.7/dipy/segment/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims copying build/lib.linux-x86_64-2.7/dipy/sims/voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims copying build/lib.linux-x86_64-2.7/dipy/sims/phantom.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-x86_64-2.7/dipy/sims/tests/test_voxel.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-x86_64-2.7/dipy/sims/tests/test_phantom.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-x86_64-2.7/dipy/sims/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/tests copying build/lib.linux-x86_64-2.7/dipy/sims/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-x86_64-2.7/dipy/direction/peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction copying build/lib.linux-x86_64-2.7/dipy/direction/probabilistic_direction_getter.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-x86_64-2.7/dipy/direction/tests/test_peaks.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-x86_64-2.7/dipy/direction/tests/test_prob_direction_getter.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-x86_64-2.7/dipy/direction/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction/tests copying build/lib.linux-x86_64-2.7/dipy/direction/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/direction creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external/tests copying build/lib.linux-x86_64-2.7/dipy/external/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external/tests copying build/lib.linux-x86_64-2.7/dipy/external/fsl.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external copying build/lib.linux-x86_64-2.7/dipy/external/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/external creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/window.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/colormap.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/regtools.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/ui.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/widget.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/fvtk.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_utils.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_widgets.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_ui.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_actors.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_fvtk.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_window.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_regtools.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/test_interactor.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/tests/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz/tests copying build/lib.linux-x86_64-2.7/dipy/viz/projections.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/interactor.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/actor.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz copying build/lib.linux-x86_64-2.7/dipy/viz/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/viz creating /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-x86_64-2.7/dipy/boots/resampling.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-x86_64-2.7/dipy/boots/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/boots copying build/lib.linux-x86_64-2.7/dipy/pkg_info.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy copying build/lib.linux-x86_64-2.7/dipy/__init__.py -> /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy running install_scripts creating /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_reconst_csd -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_reconst_csa -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_mask -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_median_otsu -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_reconst_dti_restore -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_reconst_dti -> /<>/debian/tmp/usr/bin copying build/scripts-2.7/dipy_nlmeans -> /<>/debian/tmp/usr/bin changing mode of /<>/debian/tmp/usr/bin/dipy_reconst_csd to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_reconst_csa to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_mask to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_median_otsu to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_reconst_dti_restore to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_reconst_dti to 775 changing mode of /<>/debian/tmp/usr/bin/dipy_nlmeans to 775 running install_data creating /<>/debian/tmp/usr/share creating /<>/debian/tmp/usr/share/doc creating /<>/debian/tmp/usr/share/doc/dipy creating /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dti.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dki.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/brain_extraction_dwi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_clustering_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_surfaces.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_quick_start.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/bundle_registration.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/snr_in_cc.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_eudx_odf.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/simulate_multi_tensor.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/kfold_xval.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_bundles.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/sfm_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csa_parallel.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/denoise_nlmeans.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_shore.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/fiber_to_bundle_coherence.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/introduction_to_basic_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/gradients_spheres.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_length.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_extending_clustering_framework.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_formats.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_slice.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_tissue_classifier.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/syn_registration_3d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/affine_registration_3d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/deterministic_fiber_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/combined_workflow_creation.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_fwdti.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/probabilistic_fiber_tracking.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/simulate_dki.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsi_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tissue_classification.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_gqi.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/quick_start.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/contextual_enhancement.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_advanced.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/workflow_creation.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csd.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_clustering_features.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/viz_ui.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_mapmri.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/syn_registration_2d.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reslice_datasets.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_shore_metrics.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/restore_dti.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/sfm_reconst.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csa.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/tracking_eudx_tensor.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/linear_fascicle_evaluation.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/segment_quickbundles.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/denoise_localpca.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/denoise_ascm.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_dsid.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_csd_parallel.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/reconst_ivim.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/streamline_tools.py -> /<>/debian/tmp/usr/share/doc/dipy/examples copying doc/examples/piesno.py -> /<>/debian/tmp/usr/share/doc/dipy/examples running install_egg_info Writing /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy-0.13.0.egg-info : # Prune duplicate LICENSE file find debian/ -name LICENSE -delete : # Only now lets build docs : # Copy pregenerated examples cp -rp doc-examples/*/examples_built/* doc/examples_built/ export PYTHONPATH=$(/bin/ls -d /<>/debian/tmp/usr/lib/python2.7/*-packages) \ MPLCONFIGDIR=/<>/build HOME=/<>/build; \ cd doc; /usr/bin/make html-after-examples SPHINXOPTS="-D today=\"November 25, 2017\"" make[2]: Entering directory '/<>/doc' # Standard html build after examples have been prepared sphinx-build -b html -d _build/doctrees -D today="November 25, 2017" . _build/html Running Sphinx v1.6.5 making output directory... Generating grammar tables from /usr/share/sphinx/pycode/Grammar-py2.txt /usr/lib/python2.7/dist-packages/sphinx/util/compat.py:40: RemovedInSphinx17Warning: sphinx.util.compat.Directive is deprecated and will be removed in Sphinx 1.7, please use docutils' instead. RemovedInSphinx17Warning) Initializing GitHub plugin loading pickled environment... not yet created loading intersphinx inventory from http://docs.python.org/objects.inv... WARNING: intersphinx inventory 'http://docs.python.org/objects.inv' not fetchable due to : HTTPConnectionPool(host='127.0.0.1', port=9): Max retries exceeded with url: http://docs.python.org/objects.inv (Caused by ProxyError('Cannot connect to proxy.', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused',))) building [mo]: targets for 0 po files that are out of date building [html]: targets for 104 source files that are out of date updating environment: 104 added, 0 changed, 0 removed reading sources... 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[100%] theory/spherical /<>/doc/dependencies.rst:11: WARNING: Unexpected indentation. /<>/doc/dependencies.rst:12: WARNING: Block quote ends without a blank line; unexpected unindent. /<>/doc/dependencies.rst:7: WARNING: Unknown target name: "h5py". /<>/doc/devel/coding_style_guideline.rst:7: WARNING: Unknown target name: "dipy". /<>/doc/devel/coding_style_guideline.rst:45: WARNING: Unknown target name: "numpy docstring standard https://github.com/numpy/numpy/blob/master/doc/howto_document.rst.txt>". /<>/doc/devel/coding_style_guideline.rst:69: WARNING: Unknown target name: "dipy". /<>/doc/devel/make_release.rst:81: WARNING: Bullet list ends without a blank line; unexpected unindent. /<>/doc/devel/make_release.rst:78: WARNING: Unknown target name: "nipy buildbot". /<>/doc/devel/make_release.rst:165: WARNING: Unknown target name: "pypi". /<>/doc/documentation.rst:8: WARNING: toctree contains reference to nonexisting document u'reference/index' /<>/doc/documentation.rst:8: WARNING: toctree contains reference to nonexisting document u'reference_cmd/index' /<>/doc/examples_built/affine_registration_3d.rst:82: WARNING: Literal block expected; none found. /<>/doc/examples_built/affine_registration_3d.rst:118: WARNING: Literal block expected; none found. /<>/doc/examples_built/affine_registration_3d.rst:230: WARNING: Literal block expected; none found. /<>/doc/examples_built/affine_registration_3d.rst:268: WARNING: Literal block expected; none found. /<>/doc/examples_built/combined_workflow_creation.rst:16: WARNING: Literal block expected; none found. /<>/doc/examples_built/combined_workflow_creation.rst:120: WARNING: Literal block expected; none found. /<>/doc/examples_built/combined_workflow_creation.rst:77: WARNING: Unknown target name: "out". /<>/doc/examples_built/combined_workflow_creation.rst:77: WARNING: Unknown target name: "out". /<>/doc/examples_built/contextual_enhancement.rst:79: WARNING: Literal block expected; none found. 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The HTML pages are in _build/html. make[2]: Leaving directory '/<>/doc' rm doc/_build/html/_static/jquery.js rm -r doc/_build/html/_sources rm: cannot remove 'doc/_build/html/_sources': No such file or directory debian/rules:75: recipe for target 'override_dh_auto_install' failed make[1]: [override_dh_auto_install] Error 1 (ignored) : # objects inventory is of no use for the package rm doc/_build/html/objects.inv : # Run tests later on : # cd build to prevent use of local/not-built source tree cd build; \ for PYTHON in python2.7; do \ echo "I: Running Dipy unittests using $PYTHON"; \ PATH=/<>/debian/tmp/usr/bin:$PATH \ PYTHONPATH=$(/bin/ls -d /<>/debian/tmp/usr/lib/$PYTHON/*-packages) \ MPLCONFIGDIR=/tmp/ \ $PYTHON /usr/bin/nosetests -sv --exclude 'test_(peaksFromModelParallel|fetcher)' dipy; \ done I: Running Dipy unittests using python2.7 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:45: UserWarning: sklearn is not available, you can use 'nnls' method to fit the SparseFascicleModel warnings.warn(w) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/docstring_parser.py:151: UserWarning: Unknown section Yields warn("Unknown section %s" % key) Set numpy print options to "legacy" for new versions of numpy ... ok Compares the output of the optimized function to compute the cross- ... ok Compares the output of the optimized function to compute the cross- ... ok dipy.align.tests.test_crosscorr.test_compute_cc_steps_2d ... ok dipy.align.tests.test_crosscorr.test_compute_cc_steps_3d ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_expectmax.test_quantize_positive_2d ... ok dipy.align.tests.test_expectmax.test_quantize_positive_3d ... ok dipy.align.tests.test_expectmax.test_compute_masked_class_stats_2d ... ok dipy.align.tests.test_expectmax.test_compute_masked_class_stats_3d ... ok dipy.align.tests.test_imaffine.test_transform_centers_of_mass_3d ... ok dipy.align.tests.test_imaffine.test_transform_geometric_centers_3d ... ok dipy.align.tests.test_imaffine.test_transform_origins_3d ... ok dipy.align.tests.test_imaffine.test_affreg_all_transforms ... ok dipy.align.tests.test_imaffine.test_affreg_defaults ... ok dipy.align.tests.test_imaffine.test_mi_gradient ... ok dipy.align.tests.test_imaffine.test_affine_map ... ok dipy.align.tests.test_imaffine.test_MIMetric_invalid_params ... ok Test matrix multiplication using None as identity ... ok Test 2D DiffeomorphicMap ... ok Test simplification of 2D diffeomorphic maps ... ok Test simplification of 3D diffeomorphic maps ... ok Test exceptions from SyN ... ok Test direction and spacings from affine transforms ... ok Test 2D SyN with SSD metric, demons-like optimizer ... Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('AFFINE', 2)>>0.995530 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('AFFINE', 3)>>0.985771 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('RIGID', 2)>>0.998987 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('RIGID', 3)>>0.999780 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('ROTATION', 2)>>0.999884 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('ROTATION', 3)>>0.999642 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('SCALING', 2)>>0.994974 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('SCALING', 3)>>0.993367 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('TRANSLATION', 2)>>0.997435 Optimizing level 2 [max iter: 1000] Optimizing level 1 [max iter: 100] Optimizing level 0 [max iter: 50] ('TRANSLATION', 3)>>0.999297 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Optimizing level 2 [max iter: 10000] Optimizing level 1 [max iter: 1000] Optimizing level 0 [max iter: 100] ('TRANSLATION', 2)>>0.999459 ('TRANSLATION', 2)>>0.909207 Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Optimizing level 3 0: 156.340667 156.340667 312.681333 inf 1: 148.967083 148.967083 297.934166 inf 2: 140.803789 140.803789 281.607578 inf 3: 132.911776 132.911776 265.823552 inf 4: 123.231998 123.231998 246.463996 inf 5: 114.722137 114.722137 229.444274 inf 6: 107.066896 107.066896 214.133792 inf 7: 102.035946 102.035946 204.071893 inf 8: 96.646769 96.646769 193.293539 inf 9: 89.674511 89.674511 179.349022 inf 10: 81.181186 81.181186 162.362373 inf 11: 75.765549 75.765549 151.531097 inf 12: 71.448292 71.448292 142.896584 0.00527899988007 13: 68.103006 68.103006 136.206013 0.00538550965452 14: 64.868980 64.868980 129.737959 0.00538218046988 15: 62.594987 62.594987 125.189974 0.00529894946063 16: 58.781530 58.781530 117.563061 0.00510649757567 17: 56.599954 56.599954 113.199908 0.00495917428724 18: 53.238663 53.238663 106.477326 0.00476453916401 19: 51.677319 51.677319 103.354637 0.00461570235729 20: 49.654630 49.654630 99.309260 0.00435744276489 21: 49.086610 49.086610 98.173219 0.00406536793558 22: 47.099344 47.099344 94.198688 0.00370474197522 23: 46.583474 46.583474 93.166947 0.00347969318934 24: 44.167168 44.167168 88.334336 0.00321263357 25: 44.104985 44.104985 88.209970 0.00306886709413 26: 41.818023 41.818023 83.636045 0.00281824246091 27: 42.280232 42.280232 84.560465 0.00269598499568 28: 40.373052 40.373052 80.746105 0.00241256012859 29: 40.929610 40.929610 81.859220 0.00229634961143 30: 38.793845 38.793845 77.587689 0.00204198505707 31: 39.270995 39.270995 78.541989 0.00201000574156 32: 37.058360 37.058360 74.116720 0.00184071553129 33: 37.857091 37.857091 75.714183 0.00187293199021 34: 35.392437 35.392437 70.784874 0.00169407995287 35: 36.346426 36.346426 72.692851 0.00176889705731 36: 33.366239 33.366239 66.732478 0.00161080093475 37: 34.626742 34.626742 69.253484 0.00180605132828 38: 31.657367 31.657367 63.314735 0.0016914977918 39: 33.291129 33.291129 66.582258 0.00193633290358 40: 30.898133 30.898133 61.796266 0.00178237272845 41: 32.607017 32.607017 65.214034 0.00191967089917 42: 30.491504 30.491504 60.983008 0.00165174903296 43: 32.109408 32.109408 64.218817 0.00168980865541 44: 29.815596 29.815596 59.631193 0.00135709332533 45: 31.568095 31.568095 63.136189 0.00139855118805 46: 29.123323 29.123323 58.246645 0.00103998280191 47: 30.770403 30.770403 61.540807 0.00112624088936 48: 28.418689 28.418689 56.837378 0.000819504033266 49: 29.972872 29.972872 59.945744 0.000995694884037 50: 27.698712 27.698712 55.397424 0.000767361992739 51: 29.073224 29.073224 58.146448 0.00102008209989 52: 26.763446 26.763446 53.526892 0.000858631818046 53: 28.288587 28.288587 56.577174 0.00114771595506 54: 25.746488 25.746488 51.492975 0.00097547543541 55: 26.884203 26.884203 53.768406 0.0012793516266 56: 24.718105 24.718105 49.436210 0.00116605752493 57: 25.901151 25.901151 51.802303 0.00147185096206 58: 23.963134 23.963134 47.926267 0.00132522826521 59: 25.099442 25.099442 50.198884 0.00158080808361 60: 23.193522 23.193522 46.387044 0.00139065320033 61: 24.386877 24.386877 48.773754 0.00160894539784 62: 22.611446 22.611446 45.222892 0.00136962709013 63: 23.876936 23.876936 47.753872 0.00153372548589 64: 22.131514 22.131514 44.263029 0.00123947671127 65: 23.519527 23.519527 47.039053 0.00137666140048 66: 21.741020 21.741020 43.482040 0.00102359729956 67: 23.119625 23.119625 46.239251 0.00116206991529 68: 21.285955 21.285955 42.571909 0.000844345283071 69: 22.573616 22.573616 45.147233 0.00102395857806 70: 20.836108 20.836108 41.672215 0.00075602273148 71: 22.050367 22.050367 44.100733 0.000960390222592 72: 20.359338 20.359338 40.718676 0.000728940860321 73: 21.396826 21.396826 42.793651 0.000967095161756 74: 19.820398 19.820398 39.640796 0.000789773021905 75: 20.854537 20.854537 41.709075 0.00104764785833 76: 19.226519 19.226519 38.453037 0.000871598365112 77: 20.281441 20.281441 40.562882 0.00114496640549 78: 18.781153 18.781153 37.562306 0.00095370490625 79: 19.785573 19.785573 39.571146 0.00119548391657 80: 18.142319 18.142319 36.284638 0.000977578291714 81: 18.813789 18.813789 37.627578 0.00124220312648 82: 17.671994 17.671994 35.343989 0.00111155995002 83: 19.449356 19.449356 38.898712 0.00133161841651 84: 17.055337 17.055337 34.110675 0.00090724353017 85: 16.572696 16.572696 33.145391 0.00119602806401 86: 17.331272 17.331272 34.662544 0.00136336453042 87: 17.745468 17.745468 35.490937 0.00136361313387 88: 16.648868 16.648868 33.297735 0.00107740755087 89: 18.029414 18.029414 36.058827 0.00118701273421 90: 16.138845 16.138845 32.277689 0.000748281690963 91: 16.351669 16.351669 32.703337 0.000946490666985 92: 16.237452 16.237452 32.474905 0.000876768624823 93: 17.482327 17.482327 34.964655 0.000941058631939 94: 15.747353 15.747353 31.494705 0.000538321623884 95: 16.277016 16.277016 32.554032 0.000735150892326 96: 15.817792 15.817792 31.635583 0.000505504944532 97: 17.445416 17.445416 34.890832 0.000641647468135 98: 15.390006 15.390006 30.780012 0.000337273496377 99: 15.634715 15.634715 31.269429 0.000539913031402 100: 15.865204 15.865204 31.730407 0.000543157147974 101: 16.971661 16.971661 33.943322 0.000556764495422 102: 15.544037 15.544037 31.088074 7.6766964816e-05 Optimizing level 2 0: 82.844471 82.844471 165.688942 inf 1: 68.120114 68.120114 136.240228 inf 2: 61.459507 61.459507 122.919014 inf 3: 55.603287 55.603287 111.206575 inf 4: 49.339565 49.339565 98.679130 inf 5: 43.843783 43.843783 87.687566 inf 6: 38.174086 38.174086 76.348171 inf 7: 33.032477 33.032477 66.064955 inf 8: 29.103317 29.103317 58.206633 inf 9: 25.819876 25.819876 51.639752 inf 10: 23.055481 23.055481 46.110961 inf 11: 20.679177 20.679177 41.358354 inf 12: 18.991290 18.991290 37.982579 0.00940663911582 13: 17.612077 17.612077 35.224153 0.0091906439228 14: 16.280135 16.280135 32.560270 0.00904239811595 15: 14.445076 14.445076 28.890152 0.00876415654088 16: 12.957554 12.957554 25.915108 0.00847347536568 17: 12.313899 12.313899 24.627798 0.00819608889951 18: 12.201598 12.201598 24.403195 0.00778549802713 19: 10.706605 10.706605 21.413210 0.00720138647586 20: 12.330187 12.330187 24.660375 0.00688499527239 21: 9.785194 9.785194 19.570388 0.00591080845698 22: 10.252490 10.252490 20.504979 0.00565664241603 23: 9.877996 9.877996 19.755993 0.00510022837953 24: 10.310660 10.310660 20.621320 0.00459181150047 25: 8.693336 8.693336 17.386673 0.00380800884601 26: 10.060590 10.060590 20.121180 0.00361100288754 27: 8.069276 8.069276 16.138551 0.00274423987972 28: 8.630954 8.630954 17.261909 0.00287931635688 29: 7.602213 7.602213 15.204426 0.00274439212979 30: 8.998320 8.998320 17.996640 0.0030089404518 31: 6.537605 6.537605 13.075211 0.00236943787577 32: 7.297023 7.297023 14.594047 0.00312804990293 33: 7.274075 7.274075 14.548149 0.0028733977654 34: 8.144336 8.144336 16.288671 0.0029288443956 35: 6.432761 6.432761 12.865522 0.00223153543419 36: 6.678328 6.678328 13.356656 0.00250855642119 37: 6.812662 6.812662 13.625324 0.00231328240372 38: 7.320413 7.320413 14.640826 0.00223122953229 39: 6.314802 6.314802 12.629604 0.00138697241827 40: 6.644665 6.644665 13.289329 0.0016232532083 41: 6.782917 6.782917 13.565834 0.00135291374063 42: 6.944910 6.944910 13.889820 0.00118021795187 43: 6.897889 6.897889 13.795777 0.000486432435941 44: 7.143819 7.143819 14.287638 0.000515194571916 45: 6.796317 6.796317 13.592634 0.000163680759214 46: 6.91ok Test 2D SyN with SSD metric, Gauss-Newton optimizer ... 4472 6.914472 13.828944 8.10696250447e-05 Optimizing level 1 0: 55.483974 55.483974 110.967948 inf 1: 32.742836 32.742836 65.485673 inf 2: 24.460964 24.460964 48.921927 inf 3: 20.457737 20.457737 40.915473 inf 4: 19.540958 19.540958 39.081916 inf 5: 19.266420 19.266420 38.532841 inf 6: 19.142562 19.142562 38.285124 inf 7: 19.507863 19.507863 39.015725 inf 8: 19.288092 19.288092 38.576183 inf 9: 20.473081 20.473081 40.946162 inf 10: 18.804245 18.804245 37.608490 inf 11: 20.228041 20.228041 40.456083 inf 12: 18.484346 18.484346 36.968691 0.00458783132678 13: 20.813856 20.813856 41.627712 0.00197608428921 14: 17.963915 17.963915 35.927830 0.000387389669082 15: 18.724214 18.724214 37.448427 0.000266289756523 16: 18.733435 18.733435 37.466870 0.000293459611875 17: 18.797480 18.797480 37.594961 0.000373803992515 18: 18.167999 18.167999 36.335997 0.000430562412408 19: 19.923407 19.923407 39.846814 0.00061267655984 20: 17.923571 17.923571 35.847143 0.000288409102969 21: 21.292972 21.292972 42.585944 0.00049576787007 22: 17.725701 17.725701 35.451402 -0.000262523023347 Optimizing level 0 0: 92.967884 92.967884 185.935768 inf 1: 74.762115 74.762115 149.524230 inf 2: 68.716232 68.716232 137.432465 inf 3: 64.340519 64.340519 128.681039 inf 4: 61.725480 61.725480 123.450961 inf 5: 58.457658 58.457658 116.915316 inf 6: 56.976401 56.976401 113.952803 inf 7: 54.314718 54.314718 108.629435 inf 8: 53.170677 53.170677 106.341353 inf 9: 51.254170 51.254170 102.508341 inf 10: 50.032752 50.032752 100.065504 inf 11: 49.471229 49.471229 98.942458 inf 12: 47.583009 47.583009 95.166019 0.00372106553979 13: 47.338730 47.338730 94.677461 0.00298626040055 14: 45.821800 45.821800 91.643600 0.00259895669698 15: 45.734851 45.734851 91.469702 0.0023635492976 16: 44.312135 44.312135 88.624269 0.00211852760271 17: 44.457572 44.457572 88.915144 0.00195627736145 18: 43.226862 43.226862 86.453724 0.00176137532044 19: 43.322958 43.322958 86.645916 0.0016265499598 20: 42.035803 42.035803 84.071605 0.00147090121951 21: 42.424518 42.424518 84.849035 0.00139316117424 22: 41.371239 41.371239 82.742478 0.00125235814602 23: 41.834709 41.834709 83.669418 0.00119116695041 24: 40.295999 40.295999 80.591999 0.00102184645223 Static-Reference Residual error: 0.006216 (0.000204) Moving-Reference Residual error :0.005740 (0.000180) Final residual error: 0.141575 (0.099656) Pre-align: [[ 1. 0. 0.] [ 0. 1. 0.] [ 0. 0. 1.]] Applying zero mask: False Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', array([[ 1., 0., 0.], [ 0., 1., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', array([[ 1., 0., 0.], [ 0., 1., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) ('Domain shape: ', array([32, 32], dtype=int32)) ('Spacing: ', array([ 8., 8.])) ('Scaling: ', array([ 8., 8.])) ('Affine: ', array([[ 8., 0., 0.], [ 0., 8., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 1.4, 1.4])) Optimizing level 3 0: 156.340667 156.340667 312.681333 inf 1: 140.425137 140.425137 280.850273 inf 2: 122.632717 122.632717 245.265433 inf 3: 107.533624 107.533624 215.067248 inf 4: 95.957127 95.957127 191.914253 inf 5: 82.847331 82.847331 165.694663 inf 6: 71.216589 71.216589 142.433178 inf 7: 63.804336 63.804336 127.608672 inf 8: 54.921843 54.921843 109.843686 inf 9: 45.509380 45.509380 91.018760 inf 10: 39.685490 39.685490 79.370980 inf 11: 35.088915 35.088915 70.177829 inf 12: 29.560406 29.560406 59.120811 0.010252829077 13: 25.559514 25.559514 51.119027 0.0104618755948 14: 22.480701 22.480701 44.961402 0.0106048525408 15: 19.647836 19.647836 39.295672 0.0107012313567 16: 17.523070 17.523070 35.046140 0.0107498586809 17: 15.908172 15.908172 31.816345 0.0106623349075 18: 14.573980 14.573980 29.147960 0.010479013914 19: 12.763208 12.763208 25.526415 0.0101981845737 20: 11.607060 11.607060 23.214120 0.00984243504571 21: 11.126164 11.126164 22.252327 0.00943413139255 22: 10.633993 10.633993 21.267985 0.00896270115565 23: 10.981419 10.981419 21.962837 0.00834213382859 24: 12.486148 12.486148 24.972296 0.00733610524607 25: 14.950756 14.950756 29.901511 0.0057713218819 26: 12.711562 12.711562 25.423124 0.0034201470646 27: 13.592291 13.592291 27.184581 0.00206555283763 28: 12.457476 12.457476 24.914953 0.000649771248252 29: 13.910016 13.910016 27.820032 -5.3336298664e-05 Optimizing level 2 0: 62.012023 62.012023 124.024046 inf 1: 57.608695 57.608695 115.217391 inf 2: 50.163408 50.163408 100.326816 inf 3: 48.258825 48.258825 96.517651 inf 4: 42.910077 42.910077 85.820154 inf 5: 43.092702 43.092702 86.185405 inf 6: 37.356138 37.356138 74.712277 inf 7: 39.345178 39.345178 78.690355 inf 8: 32.612040 32.612040 65.224081 inf 9: 33.950967 33.950967 67.901934 inf 10: 30.066702 30.066702 60.133404 inf 11: 32.152520 32.152520 64.305040 inf 12: 27.291334 27.291334 54.582667 0.00495239461651 13: 28.884324 28.884324 57.768648 0.00480841994351 14: 25.574754 25.574754 51.149509 0.00427792990101 15: 28.284757 28.284757 56.569514 0.00423219213981 16: 21.607941 21.607941 43.215882 0.00358290988315 17: 24.990070 24.990070 49.980140 0.00397218782635 18: 19.062726 19.062726 38.125451 0.00348687745235 19: 23.398149 23.398149 46.796297 0.00406514000641 20: 16.343528 16.343528 32.687056 0.00343219384356 21: 22.601096 22.601096 45.202192 0.00428592192363 22: 15.084519 15.084519 30.169038 0.00349068646195 23: 18.700223 18.700223 37.400447 0.00427820082276 24: 15.670585 15.670585 31.341170 0.00379065596597 25: 18.931024 18.931024 37.862048 0.0040920062772 26: 12.530558 12.530558 25.061117 0.00322803496567 27: 19.797907 19.797907 39.595814 0.00398595808617 28: 11.037995 11.037995 22.075989 0.00235298241196 29: 17.174187 17.174187 34.348374 0.00353004137073 30: 12.627387 12.627387 25.254775 0.0023654053551 31: 19.203049 19.203049 38.406099 0.00297343459885 32: 11.237931 11.237931 22.475863 0.00103976994607 33: 18.539458 18.539458 37.078915 0.00225875135923 34: 11.250667 11.250667 22.501333 0.000361001600042 35: 18.779912 18.779912 37.559824 0.00163516655765 36: 10.812126 10.812126 21.624253 -1.71116176228e-05 Optimizing level 1 0: 102.159395 102.159395 204.318791 inf 1: 38.538488 38.538488 77.076976 inf 2: 22.870012 22.870012 45.740024 inf 3: 41.167880 41.167880 82.335761 inf 4: 19.458542 19.458542 38.917084 inf 5: 42.946504 42.946504 85.893007 inf 6: 23.459028 23.459028 46.918055 inf 7: 46.032890 46.032890 92.065779 inf 8: 24.332195 24.332195 48.664390 inf 9: 46.758303 46.758303 93.516606 inf 10: 24.724342 24.724342 49.448683 inf 11: 48.133452 48.133452 96.266905 inf 12: 25.054444 25.054444 50.108887 0.00180557220616 13: ok Test 3D SyN with SSD metric, demons-like optimizer ... ok Test 3D SyN with SSD metric, Gauss-Newton optimizer ... 48.975072 48.975072 97.950144 -0.000476630064391 Optimizing level 0 0: 112.250929 112.250929 224.501859 inf 1: 71.817064 71.817064 143.634128 inf 2: 82.073682 82.073682 164.147364 inf 3: 65.545791 65.545791 131.091581 inf 4: 83.595213 83.595213 167.190425 inf 5: 66.425310 66.425310 132.850621 inf 6: 79.385832 79.385832 158.771664 inf 7: 60.832196 60.832196 121.664392 inf 8: 75.885633 75.885633 151.771266 inf 9: 58.115732 58.115732 116.231465 inf 10: 73.245958 73.245958 146.491917 inf 11: 56.244769 56.244769 112.489538 inf 12: 71.479211 71.479211 142.958421 0.00268127338637 13: 55.068711 55.068711 110.137422 0.0012310962322 14: 70.612433 70.612433 141.224865 0.00191119671472 15: 54.001589 54.001589 108.003178 0.00105747478492 16: 69.660757 69.660757 139.321514 0.0018093742514 17: 53.491570 53.491570 106.983141 0.000770893359185 18: 68.957136 68.957136 137.914272 0.00140431073811 19: 53.360821 53.360821 106.721642 0.000384920192061 20: 67.364421 67.364421 134.728841 0.00111124821321 21: 53.865511 53.865511 107.731023 0.000207882927452 22: 65.605660 65.605660 131.211321 0.000907702549183 23: 54.682446 54.682446 109.364891 0.000136562723832 24: 64.126828 64.126828 128.253656 0.000767791843949 Static-Reference Residual error: 0.006348 (0.000205) Moving-Reference Residual error :0.006518 (0.000255) Final residual error: 0.129906 (0.082716) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.500000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.500000. Moving scale space: ('Domain shape: ', array([64, 64, 30], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 15], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Static scale space: ('Domain shape: ', array([64, 64, 30], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 15], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Optimizing level 1 0: 156.113535 156.113535 312.227070 inf 1: 123.101970 123.101970 246.203940 inf 2: 94.813457 94.813457 189.626914 inf 3: 69.699435 69.699435 139.398871 inf 4: 47.676754 47.676754 95.353509 inf 5: 30.881051 30.881051 61.762102 inf 6: 17.776930 17.776930 35.553860 inf 7: 8.918014 8.918014 17.836029 inf 8: 4.241232 4.241232 8.482464 inf 9: 4.299631 4.299631 8.599262 inf Optimizing level 0 0: 77.424529 77.424529 154.849058 inf 1: 61.312644 61.312644 122.625289 inf 2: 53.181795 53.181795 106.363589 inf 3: 48.402473 48.402473 96.804945 inf 4: 46.096480 46.096480 92.192959 inf 5: 44.012536 44.012536 88.025071 inf 6: 44.832914 44.832914 89.665828 inf 7: 40.529286 40.529286 81.058572 inf 8: 42.314743 42.314743 84.629486 inf 9: 40.040125 40.040125 80.080250 inf Static-Reference Residual error: 0.004035 (0.000026) Moving-Reference Residual error :0.003945 (0.000028) Final residual error: 0.004809 (0.000069) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.500000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.500000. Moving scale space: ('Domain shape: ', array([64, 64, 35], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 18], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0ok Test 2D SyN with CC metric ... ok Test 3D SyN with CC metric ... .], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Static scale space: ('Domain shape: ', array([64, 64, 35], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([32, 32, 18], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.5, 0.5, 0.5])) Optimizing level 1 0: 174.160236 174.160236 348.320472 inf 1: 129.301704 129.301704 258.603408 inf 2: 90.003685 90.003685 180.007370 inf 3: 62.023355 62.023355 124.046710 inf 4: 44.031650 44.031650 88.063299 inf 5: 30.138085 30.138085 60.276171 inf 6: 19.769585 19.769585 39.539169 inf 7: 12.200860 12.200860 24.401720 inf 8: 7.030166 7.030166 14.060332 inf 9: 3.932361 3.932361 7.864721 inf Optimizing level 0 0: 50.431378 50.431378 100.862756 inf 1: 42.406364 42.406364 84.812728 inf 2: 34.634418 34.634418 69.268836 inf 3: 27.500056 27.500056 55.000112 inf 4: 22.276238 22.276238 44.552475 inf 5: 18.144726 18.144726 36.289452 inf 6: 14.831816 14.831816 29.663631 inf 7: 12.606340 12.606340 25.212681 inf 8: 14.069035 14.069035 28.138070 inf 9: 13.291495 13.291495 26.582989 inf Static-Reference Residual error: 0.002930 (0.000043) Moving-Reference Residual error :0.002968 (0.000045) Final residual error: 0.004096 (0.000111) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) Optimizing level 1 0: -2470.850522 -2470.850522 -4941.701045 inf 1: -2809.035391 -2809.035391 -5618.070783 inf 2: -3097.929180 -3097.929180 -6195.858360 inf 3: -3314.948446 -3314.948446 -6629.896893 inf 4: -3487.392000 -3487.392000 -6974.784000 inf 5: -3687.198100 -3687.198100 -7374.396200 inf 6: -3901.419800 -3901.419800 -7802.839600 inf 7: -4062.786802 -4062.786802 -8125.573603 inf 8: -4204.035022 -4204.035022 -8408.070044 inf 9: -4317.120683 -4317.120683 -8634.241367 inf 10: -4400.328948 -4400.328948 -8800.657896 inf 11: -4472.480246 -4472.480246 -8944.960493 inf 12: -4533.762530 -4533.762530 -9067.525059 0.00381066805446 13: -4576.180550 -4576.180550 -9152.361100 0.00317135627435 14: -4601.501231 -4601.501231 -9203.002462 0.00264119987365 Optimizing level 0 0: -15604.348537 -15604.348537 -31208.697075 inf 1: -15735.173699 -15735.173699 -31470.347397 inf 2: -15827.193833 -15827.193833 -31654.387667 inf 3: -15919.901145 -15919.901145 -31839.802290 inf 4: -15989.430778 -15989.430778 -31978.861557 inf Static-Reference Residual error: 0.002058 (0.000017) Moving-Reference Residual error :0.002026 (0.000016) Final residual error: 0.002855 (0.000047) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 2. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., ok Test 3D SyN with EM metric, Gauss-Newton optimizer ... 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2, 0.2])) Static scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2, 0.2])) Optimizing level 1 0: -23248.088838 -23248.088838 -46496.177675 inf 1: -24224.696019 -24224.696019 -48449.392038 inf 2: -24643.553653 -24643.553653 -49287.107306 inf 3: -25094.155774 -25094.155774 -50188.311549 inf 4: -25644.508102 -25644.508102 -51289.016205 inf 5: -26011.053446 -26011.053446 -52022.106891 inf 6: -26297.046539 -26297.046539 -52594.093079 inf 7: -26582.308034 -26582.308034 -53164.616069 inf 8: -26844.545217 -26844.545217 -53689.090434 inf 9: -27070.431185 -27070.431185 -54140.862369 inf 10: -27274.870312 -27274.870312 -54549.740623 inf 11: -27486.353798 -27486.353798 -54972.707596 inf 12: -27668.792687 -27668.792687 -55337.585375 0.00107974539771 13: -27797.012809 -27797.012809 -55594.025618 0.000928999617125 14: -27907.313181 -27907.313181 -55814.626362 0.000822111807435 15: -28001.029640 -28001.029640 -56002.059280 0.000717391395128 16: -28056.887941 -28056.887941 -56113.775883 0.000621179410212 17: -28088.329738 -28088.329738 -56176.659477 0.000540034997741 18: -28113.415972 -28113.415972 -56226.831944 0.000461394525131 19: -28141.625777 -28141.625777 -56283.251554 0.000384025414279 Optimizing level 0 0: -147043.563655 -147043.563655 -294087.127311 inf 1: -150114.364621 -150114.364621 -300228.729243 inf 2: -152368.656019 -152368.656019 -304737.312038 inf 3: -153889.732254 -153889.732254 -307779.464508 inf 4: -155157.998502 -155157.998502 -310315.997003 inf Static-Reference Residual error: 0.003329 (0.000082) Moving-Reference Residual error :0.003027 (0.000066) Final residual error: 0.005157 (0.000276) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 1.000000. Creating scale space from the static image. Levels: 2. Sigma factor: 1.000000. Moving scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Static scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Optimizing level 1 0: 346.480775 342.803728 689.284503 inf 1: 291.387629 292.951455 584.339084 inf 2: 251.682942 253.268585 504.951528 inf 3: 220.268379 218.766441 439.034821 inf 4: 186.456667 188.759555 375.216221 inf 5: 156.027206 156.095939 312.123145 inf 6: 128.952323 129.553045 258.505368 inf 7: 107.871485 109.416212 217.287697 inf 8: 93.687720 94.423634 188.111354 inf 9: 75.719528 75.959777 151.679305 inf 10: 60.603728 59.926950 120.530678 iok Test 2D SyN with EM metric, Gauss-Newton optimizer ... nf 11: 47.674940 46.755748 94.430688 inf 12: 35.044059 34.905537 69.949597 0.0124415020675 13: 25.194923 24.931808 50.126732 0.0129670271344 14: 17.063045 16.554034 33.617079 0.0136536846628 15: 10.101709 9.922347 20.024056 0.0144692978851 16: 5.069973 4.947817 10.017790 0.0154226233447 17: 2.252428 2.230622 4.483050 0.0165417608464 18: 1.471611 1.455456 2.927067 0.0177808615285 19: 1.014883 0.997455 2.012338 0.0189586516074 Optimizing level 0 0: 74.174105 47.825985 122.000090 inf 1: 59.078242 41.799261 100.877503 inf 2: 41.027989 34.696090 75.724079 inf 3: 33.356178 28.627192 61.983369 inf 4: 28.613191 24.218729 52.831920 inf Static-Reference Residual error: 0.004747 (0.000101) Moving-Reference Residual error :0.004916 (0.000105) Final residual error: 0.004626 (0.000181) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 3. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 3. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Optimizing level 2 0: 25.260563 25.935777 51.196341 inf 1: 24.291909 24.782446 49.074355 inf 2: 21.905502 19.816674 41.722175 inf 3: 16.319558 16.287693 32.607251 inf 4: 15.510241 15.323561 30.833801 inf 5: 12.833022 10.664176 23.497198 inf 6: 6.911958 6.402278 13.314236 inf 7: 4.227105 4.539786 8.766891 inf 8: 2.875194 2.799543 5.674737 inf 9: 1.028632 1.103500 2.132132 inf 10: 0.385111 0.588306 0.973417 inf 11: 0.378783 0.469470 0.848253 inf 12: 0.315450 0.249531 0.564981 0.0187608292452 13: 0.277854 0.216360 0.494215 0.0200900051085 14: 0.176018 0.178722 0.354740 0.021042563693 15: 0.226428 0.172354 0.398782 0.0217646576751 16: 0.193429 0.146379 0.339808 0.0221198183291 17: 0.210851 0.177178 0.388029 0.021910199917 18: 0.168833 0.142166 0.310999 0.0208909271489 19: 0.213690 0.232610 0.446300 0.019370254433 20: 0.206625 0.174062 0.380687 0.0157523208246 21: 0.204801 0.166812 0.371613 0.0097824020566 22: 0.181652 0.149366 0.331018 0.00556522091684 23: 0.191620 0.185595 0.377215 0.00392923926685 24: 0.139017 0.145247 0.284264 0.00173381961047 25: 0.148625 0.144926 0.293551 0.00175008710592 26: 0.128109 0.135598 0.263706 0.00175560083872 27: 0.174627 0.149750 0.324377 0.00267066204631 28: 0.142036 0.134526 0.276562 0.00226999175811 29: 0.122272 0.137869 0.260141 0.00275268243216 30: 0.163944 0.168988 0.332932 0.00299674337458 31: 0.167924 0.167596 0.335521 0.00237499271178 32: 0.069629 0.070374 0.140003 0.000992499624133 33: 0.239107 0.184427 0.423534 0.00291081159258 34: 0.079618 0.076774 0.156393 3.45886473741e-05 35: 0.173560 0.134339 0.307899 0.00193756509626 36: 0.112290 0.111505 0.223795 0.000682447101412 37: 0.188214 0.174066 0.362280 0.00149882678269 38: 0.163520 0.150707 0.314228 -0.000178846953538 Optimizing level 1 0: 1.477601 1.834135 3.311737 inf ok Test 3D SyN with EM metric, demons-like optimizer ... ok Test 2D SyN with EM metric, demons-like optimizer ... 1: 0.613078 0.678346 1.291423 inf 2: 0.284192 0.367917 0.652109 inf 3: 0.187872 0.262230 0.450102 inf 4: 0.249391 0.355520 0.604910 inf 5: 0.167028 0.262589 0.429618 inf 6: 0.202379 0.308202 0.510581 inf 7: 0.200272 0.280100 0.480372 inf 8: 0.154977 0.242965 0.397942 inf 9: 0.198615 0.255643 0.454258 inf 10: 0.230596 0.326603 0.557198 inf 11: 0.160809 0.252730 0.413539 inf 12: 0.192483 0.314786 0.507269 0.010262032534 13: 0.171594 0.260822 0.432415 0.00380157818974 14: 0.203905 0.316645 0.520550 0.00130883853748 15: 0.162604 0.254376 0.416980 6.17547123078e-05 16: 0.169782 0.300820 0.470602 0.000697374991694 17: 0.204173 0.311261 0.515435 5.31761892415e-05 18: 0.163494 0.293641 0.457135 -0.000247027324468 Optimizing level 0 0: 3.155639 6.014884 9.170523 inf 1: 2.135238 4.766694 6.901932 inf 2: 1.712096 4.452865 6.164961 inf 3: 1.444777 3.842037 5.286814 inf 4: 1.168602 3.369926 4.538528 inf 5: 1.121400 3.355414 4.476814 inf 6: 1.195686 3.274841 4.470528 inf 7: 0.994113 3.214573 4.208687 inf 8: 1.184527 2.862584 4.047111 inf 9: 1.237003 3.063938 4.300940 inf Static-Reference Residual error: 0.004514 (0.000099) Moving-Reference Residual error :0.006396 (0.000211) Final residual error: 0.007031 (0.000277) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 2. Sigma factor: 1.000000. Creating scale space from the static image. Levels: 2. Sigma factor: 1.000000. Moving scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Static scale space: ('Domain shape: ', array([256, 256, 21], dtype=int32)) ('Spacing: ', array([ 1., 1., 1.])) ('Scaling: ', array([ 1., 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0., 0.])) ('Domain shape: ', array([128, 128, 11], dtype=int32)) ('Spacing: ', array([ 2., 2., 2.])) ('Scaling: ', array([ 2., 2., 2.])) ('Affine: ', array([[ 2., 0., 0., 0.], [ 0., 2., 0., 0.], [ 0., 0., 2., 0.], [ 0., 0., 0., 1.]])) ('Sigmas: ', array([ 1., 1., 1.])) Optimizing level 1 0: 342.803728 346.480775 689.284503 inf 1: 294.194338 290.386191 584.580529 inf 2: 251.942413 258.204845 510.147257 inf 3: 213.718215 213.491909 427.210124 inf 4: 178.992199 177.054273 356.046471 inf 5: 145.964495 143.912717 289.877212 inf 6: 117.367108 114.623371 231.990480 inf 7: 93.562755 92.126507 185.689261 inf 8: 71.098561 71.701166 142.799727 inf 9: 54.763405 55.334424 110.097829 inf 10: 41.618412 42.350966 83.969378 inf 11: 31.472175 31.934961 63.407137 inf 12: 23.208258 23.210836 46.419094 0.0143712885313 13: 17.189468 17.088833 34.278301 0.0150218628492 14: 13.233163 12.934221 26.167384 0.0156621543294 15: 10.062364 9.984529 20.046893 0.0161699337205 16: 7.582229 7.566663 15.148892 0.0165886979125 17: 5.873088 5.848606 11.721694 0.0169092274948 18: 5.121109 5.123322 10.244431 0.017127673121 19: 4.643874 4.618437 9.262311 0.0171409731299 Optimizing level 0 0: 190.170283 232.805430 422.975713 inf 1: 164.591547 208.538871 373.130418 inf 2: 153.523206 186.249106 339.772312 inf 3: 142.492094 172.226443 314.718538 inf 4: 134.334164 153.192085 287.526249 inf Static-Reference Residual error: 0.006296 (0.000138) Moving-Reference Residual error :0.006979 (0.000175) Final residual error: 0.005509 (0.000413) Pre-align: None Applying zero mask: False Creating scale space from the moving image. Levels: 3. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 3. Sigma factor: 0.200000. Moving scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array(ok dipy.align.tests.test_metrics.test_exceptions ... ok dipy.align.tests.test_metrics.test_EMMetric_image_dynamics ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_parzenhist.test_cubic_spline ... ok dipy.align.tests.test_parzenhist.test_cubic_spline_derivative ... ok dipy.align.tests.test_parzenhist.test_parzen_joint_histogram ... ok dipy.align.tests.test_parzenhist.test_parzen_densities ... ok dipy.align.tests.test_parzenhist.test_joint_pdf_gradients_dense ... ok dipy.align.tests.test_parzenhist.test_joint_pdf_gradients_sparse ... ok dipy.align.tests.test_parzenhist.test_sample_domain_regular ... ok dipy.align.tests.test_parzenhist.test_exceptions ... ok dipy.align.tests.test_reslice.test_resample ... [128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Static scale space: ('Domain shape: ', array([256, 256], dtype=int32)) ('Spacing: ', array([ 1., 1.])) ('Scaling: ', array([ 1., 1.])) ('Affine: ', None) ('Sigmas: ', array([ 0., 0.])) ('Domain shape: ', array([128, 128], dtype=int32)) ('Spacing: ', array([ 2., 2.])) ('Scaling: ', array([ 2., 2.])) ('Affine: ', array([[ 2., 0., 0.], [ 0., 2., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.2, 0.2])) ('Domain shape: ', array([64, 64], dtype=int32)) ('Spacing: ', array([ 4., 4.])) ('Scaling: ', array([ 4., 4.])) ('Affine: ', array([[ 4., 0., 0.], [ 0., 4., 0.], [ 0., 0., 1.]])) ('Sigmas: ', array([ 0.6, 0.6])) Optimizing level 2 0: 25.935777 25.260563 51.196340 inf 1: 27.037444 20.694161 47.731605 inf 2: 13.784599 17.400170 31.184769 inf 3: 9.943231 10.510352 20.453583 inf 4: 6.479765 6.347510 12.827275 inf 5: 3.138036 3.538555 6.676591 inf 6: 1.532194 1.621278 3.153472 inf 7: 0.446067 0.399313 0.845380 inf 8: 0.583351 0.477470 1.060821 inf 9: 0.266033 0.259799 0.525833 inf 10: 0.371924 0.350806 0.722730 inf 11: 0.283530 0.247474 0.531004 inf 12: 0.390005 0.335070 0.725075 0.022105666329 13: 0.257404 0.309310 0.566714 0.0222740837463 14: 0.361977 0.354586 0.716564 0.0218649989799 15: 0.283879 0.263841 0.547720 0.0205758048888 16: 0.338481 0.338796 0.677277 0.0182851829331 17: 0.243377 0.273285 0.516661 0.0134650633629 18: 0.366438 0.300859 0.667297 0.00775868445447 19: 0.240609 0.259311 0.499920 0.00206424400761 20: 0.313077 0.325632 0.638709 0.00223166940837 21: 0.252695 0.254945 0.507640 0.000519703258837 22: 0.298032 0.316239 0.614271 0.00145529797612 23: 0.235446 0.276002 0.511448 0.000782973551759 24: 0.356744 0.346785 0.703530 0.001505628349 25: 0.259406 0.256541 0.515947 4.22152051242e-06 Optimizing level 1 0: 2.950720 2.337735 5.288455 inf 1: 1.651256 1.349698 3.000953 inf 2: 0.978115 0.760163 1.738278 inf 3: 0.790510 0.634077 1.424586 inf 4: 0.672293 0.519591 1.191884 inf 5: 0.657691 0.527421 1.185113 inf 6: 0.622871 0.497417 1.120288 inf 7: 0.619107 0.443264 1.062371 inf 8: 0.619072 0.438562 1.057634 inf 9: 0.563152 0.448253 1.011405 inf 10: 0.554405 0.430310 0.984715 inf 11: 0.655662 0.483635 1.139297 inf 12: 0.527491 0.396651 0.924142 0.0090064212874 13: 0.737689 0.556839 1.294528 0.00545306326781 14: 0.565609 0.409699 0.975308 0.00177170347507 15: 0.699229 0.518343 1.217572 0.00108968287617 16: 0.597859 0.431830 1.029689 -0.000181669569391 Optimizing level 0 0: 7.930473 4.096100 12.026574 inf 1: 6.012558 2.823702 8.836260 inf 2: 5.036567 2.097261 7.133827 inf 3: 4.538623 1.906303 6.444926 inf 4: 4.705374 1.814206 6.519580 inf 5: 4.348109 1.692144 6.040253 inf 6: 3.663005 1.673572 5.336577 inf 7: 3.363903 1.578398 4.942300 inf 8: 3.282773 1.626761 4.909534 inf 9: 3.211800 1.580829 4.792628 inf Static-Reference Residual error: 0.003703 (0.000049) Moving-Reference Residual error :0.003852 (0.000051) Final residual error: 0.004433 (0.000087) ok dipy.align.tests.test_scalespace.test_scale_space ... ok dipy.align.tests.test_scalespace.test_scale_space_exceptions ... ok dipy.align.tests.test_streamlinear.test_rigid_parallel_lines ... ok dipy.align.tests.test_streamlinear.test_rigid_real_bundles ... ok dipy.align.tests.test_streamlinear.test_rigid_partial_real_bundles ... ok dipy.align.tests.test_streamlinear.test_stream_rigid ... ok dipy.align.tests.test_streamlinear.test_min_vs_min_fast_precision ... ok dipy.align.tests.test_streamlinear.test_same_number_of_points ... ok dipy.align.tests.test_streamlinear.test_efficient_bmd ... ok dipy.align.tests.test_streamlinear.test_openmp_locks ... ok dipy.align.tests.test_streamlinear.test_from_to_rigid ... ok dipy.align.tests.test_streamlinear.test_matrix44 ... ok dipy.align.tests.test_streamlinear.test_abstract_metric_class ... ok dipy.align.tests.test_streamlinear.test_evolution_of_previous_iterations ... ok dipy.align.tests.test_streamlinear.test_similarity_real_bundles ... ok dipy.align.tests.test_streamlinear.test_affine_real_bundles ... (2, ) (3, ) (2, ) (3, ) [ 88.12210846 109.13088989 81.60664368] 7.98038710642 23 196 [[ 9.99575809e-01 -2.24408034e-02 -1.85637633e-02 -9.17360679e-01] [ 2.91181600e-02 7.82729959e-01 6.21679937e-01 4.98753583e-01] [ 5.79416429e-04 -6.21956769e-01 7.83051366e-01 -1.17085195e+00] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00 1.00000000e+00]] fun: 7.9803869752714425 hess_inv: <6x6 LbfgsInvHessProduct with dtype=float64> jac: array([ 4.52970994e-06, 2.48867593e-04, 1.42996726e-05, 4.26325641e-06, 1.78523862e-05, 2.04281037e-06]) message: 'CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH' nfev: 217 nit: 28 status: 0 success: True x: array([ -0.91734365, 0.49887499, -1.17085194, 2.01199544, -40.01571915, 0.37544169]) 0.0001 0.0001 fun: 4.7828792560742889e-07 hess_inv: <12x12 LbfgsInvHessProduct with dtype=float64> jac: array([ -5.67093664e-04, -4.91401362e-04, -4.58929156e-04, -3.15521347e-05, 4.75998274e-05, 1.47782464e-05, 4.40070103e-04, -2.11233809e-04, -9.95017727e-04, -7.46044199e-04, 1.04640622e-03, 4.98022282e-04]) message: 'CONVERGENCE: REL_REDUCTION_OF_F_<=_FACTR*EPSMCH' nfev: 2431 nit: 175 status: 0 success: True x: array([ -2.24380499e-04, -1.89651762e-04, -2.50562002e-04, 2.42804324e+00, -1.21193154e+01, -1.14450734e+01, 8.13674825e-01, 9.05581052e-01, 1.02808090e+00, -3.93383919e-02, -8.67418323e-02, -1.72455351e-02]) direc: array([[ 1.50879697e-06, 1.01049136e-07, 3.92802800e-07, -1.79307137e-05, -1.45636222e-05, 7.23157991e-06, 5.20353278e-07, 1.55714537e-09, -2.73360282e-07, 3.02690653e-07, 3.80957287e-07, -4.96762959e-08], [ 8.99211297e-07, 4.89843899e-07, 8.11109034e-08, 1.37524864e-05, -1.58907947e-05, 1.82567461e-05, -3.79665376e-07, 1.72251754e-07, 1.69151827e-07, 4.85185337e-08, 7.01085038e-08, 4.32158776e-07], [ 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ -4.41374614e-08, 5.60365816e-07, 4.22799206e-08, 3.87030551e-06, -1.52700791e-06, 2.67266309e-05, 4.01470525e-07, 1.72992304e-07, 8.29262978e-08, 6.92886631e-07, 2.02742914e-07, 9.11303325e-08], [ 7.11882922e-08, -5.00721662e-07, -1.61290607e-07, 1.50359794e-06, -2.99786686e-06, 6.76392389e-06, -2.13861946e-08, 6.85791721e-08, 1.34254533e-08, 1.00732780e-07, 4.96742897e-08, 2.09069876e-08], [ -4.16210241e-05, -3.15080695e-05, -6.96377363e-07, 1.91965627e-03, -3.28087096e-03, -1.56979416e-03, 3.82644810e-05, -8.06421680e-06, 2.71515162e-05, -2.14013652e-07, 7.58395784e-05, 2.91429851e-05], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00], [ -9.91041708e-07, -1.29317217e-06, 4.21888481e-07, -1.00102602e-05, 2.18774ok dipy.align.tests.test_streamlinear.test_vectorize_streamlines ... ok dipy.align.tests.test_streamlinear.test_x0_input ... ok dipy.align.tests.test_streamlinear.test_compose_decompose_matrix44 ... ok dipy.align.tests.test_streamlinear.test_cascade_of_optimizations_and_threading ... ok dipy.align.tests.test_sumsqdiff.test_compute_residual_displacement_field_ssd_2d ... ok dipy.align.tests.test_sumsqdiff.test_compute_residual_displacement_field_ssd_3d ... ok dipy.align.tests.test_sumsqdiff.test_solve_2d_symmetric_positive_definite ... ok dipy.align.tests.test_sumsqdiff.test_solve_3d_symmetric_positive_definite ... ok dipy.align.tests.test_sumsqdiff.test_compute_energy_ssd_2d ... ok dipy.align.tests.test_sumsqdiff.test_compute_energy_ssd_3d ... ok Compares the output of the demons step in 2d against an analytical ... ok Compares the output of the demons step in 3d against an analytical ... ok dipy.align.tests.test_transforms.test_number_of_parameters ... ok dipy.align.tests.test_transforms.test_param_to_matrix_2d ... ok dipy.align.tests.test_transforms.test_param_to_matrix_3d ... ok dipy.align.tests.test_transforms.test_identity_parameters ... ok dipy.align.tests.test_transforms.test_jacobian_functions ... ok dipy.align.tests.test_transforms.test_invalid_transform ... ok dipy.align.tests.test_vector_fields.test_random_displacement_field_2d ... ok dipy.align.tests.test_vector_fields.test_random_displacement_field_3d ... ok dipy.align.tests.test_vector_fields.test_harmonic_fields_2d ... ok dipy.align.tests.test_vector_fields.test_harmonic_fields_3d ... ok dipy.align.tests.test_vector_fields.test_circle ... ok dipy.align.tests.test_vector_fields.test_sphere ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_2d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_nn_2d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_nn_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_scalar_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_vector_3d ... ok dipy.align.tests.test_vector_fields.test_interpolate_vector_2d ... ok Tests the cython implementation of the 2d warpings against scipy ... ok Tests the cython implementation of the 2d warpings against scipy ... ok Tests 2D affine transform functions against scipy implementation ... ok Tests 3D affine transform functions against scipy implementation ... ok Creates two random displacement field that exactly map pixels from an input ... ok Creates two random displacement field that exactly map pixels from an input ... ok Inverts a synthetic, analytically invertible, displacement field ... ok Inverts a synthetic, analytically invertible, displacement field ... ok Expand a vector field by 2, then subsample by 2, the resulting ... ok Expand a vector field by 2, then subsample by 2, the resulting ... ok dipy.align.tests.test_vector_fields.test_downsample_scalar_field_2d ... ok dipy.align.tests.test_vector_fields.test_downsample_displacement_field_2d ... ok dipy.align.tests.test_vector_fields.test_downsample_scalar_field_3d ... ok dipy.align.tests.test_vector_fields.test_downsample_displacement_field_3d ... ok dipy.align.tests.test_vector_fields.test_reorient_vector_field_2d ... ok dipy.align.tests.test_vector_fields.test_reorient_vector_field_3d ... ok dipy.align.tests.test_vector_fields.test_reorient_random_vector_fields ... ok dipy.align.tests.test_vector_fields.test_gradient_2d ... ok dipy.align.tests.test_vector_fields.test_gradient_3d ... ok dipy.core.tests.test_geometry.test_vector_norm ... ok dipy.core.tests.test_geometry.test_sphere_cart((array([ 0.00000000e+00, 1.22464680e-16, 7.07106781e-01, ... ok dipy.core.tests.test_geometry.test_sphere_cart(array([ 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, 10.4, ... ok dipy.core.tests.test_geometry.test_sphere_cart((array([ 0.00000000e+00, 1.27363267e-15, 7.35391052e+00, ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((26,), (26,)) ... ok dipy.core.tests.test_geometry.test_sphere_cart((array(0.5), array(0.4999999999999999), array(0.7071067811865476)), array([ 0.5 , 0.5 , 0.70710678])) ... ok dipy.core.tests.test_geometry.test_sphere_cart((array(1.0), array(0.9999999999999999), array(1.0)), (1.0, 1.0, 1.0)) ... ok dipy.core.tests.test_geometry.test_invert_transform(array([ 0. , 0.03141593, 0.06283185, 0.09424778, 0.12566371, ... ok dipy.core.tests.test_geometry.test_invert_transform(array([-3.14159265, -3.0787608 , -3.01592895, -2.95309709, -2.89026524, ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[1, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[0, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[0, 0, 0], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0. , 0. , 0. ], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_nearest_pos_semi_def(array([[ 0., 0., 0.], ... ok dipy.core.tests.test_geometry.test_cart_distance(1.4142135623730951, 1.4142135623730951) ... ok dipy.core.tests.test_geometry.test_cart_distance(2.0, 2) ... ok dipy.core.tests.test_geometry.test_cart_distance(2.8284271247461903, 2.8284271247461903) ... ok dipy.core.tests.test_geometry.test_cart_distance(array([ 2.82842712, 4. ]), [2.8284271247461903, 4]) ... ok dipy.core.tests.test_geometry.test_sphere_distance(array([ 0. , 0.00402124, 0.00804248, ..., 0.01206371, ... ok dipy.core.tests.test_geometry.test_sphere_distance(array([ 0. , 0.00402124, 0.00804248, ..., 0.01206371, ... ok dipy.core.tests.test_geometry.test_sphere_distance(, , [1, 0], [0, 2]) ... ok dipy.core.tests.test_geometry.test_sphere_distance(, , [1, 0], [0, 1], 2.0) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.0, 0) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-1.0, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.70710678118654746, 0.70710678118654746) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-1.0, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(-0.99999999999999978, -1) ... ok dipy.core.tests.test_geometry.test_vector_cosine(array([-1., 1.]), [-1, 1]) ... ok dipy.core.tests.test_geometry.test_vector_cosine(False,) ... ok dipy.core.tests.test_geometry.test_vector_cosine(0.076583261948278414, 0.0765832619482784) ... ok dipy.core.tests.test_geometry.test_lambert_equal_area_projection_polar(array([ 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.]), array([ 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.])) ... ok dipy.core.tests.test_geometry.test_lambert_equal_area_projection_cart(array([ 1.41421356, 1.41421356, 0. , 1.41421356, 1.41421356, 2. ]), array([ 1.41421356, 1.41421356, 0. , 1.41421356, 1.41421356, 2. ])) ... ok dipy.core.tests.test_geometry.test_circumradius(0.70710678118654757, 0.70710678118654757) ... ok dipy.core.tests.test_geometry.test_vec2vec_rotmat ... ok dipy.core.tests.test_geometry.test_compose_transformations ... ok dipy.core.tests.test_geometry.test_compose_decompose_matrix ... ok dipy.core.tests.test_geometry.test_perpendicular_directions ... ok dipy.core.tests.test_geometry.test_dist_to_corner ... ok dipy.core.tests.test_gradients.test_btable_prepare ... ok dipy.core.tests.test_gradients.test_GradientTable ... ok dipy.core.tests.test_gradients.test_gradient_table_from_bvals_bvecs ... ok dipy.core.tests.test_gradients.test_b0s ... ok dipy.core.tests.test_gradients.test_gtable_from_files ... ok dipy.core.tests.test_gradients.test_deltas ... ok dipy.core.tests.test_gradients.test_qvalues ... ok dipy.core.tests.test_gradients.test_reorient_bvecs ... ok Test that the presence of nan's in b-vectors doesn't raise warnings. ... ok Tests whether we have properly generated bvecs. ... ok dipy.core.tests.test_gradients.test_check_multi_b ... ok dipy.core.tests.test_graph.test_graph ... ok dipy.core.tests.test_ndindex.test_ndindex ... ok dipy.core.tests.test_ndindex.test_ndindex_0d ... ok dipy.core.tests.test_optimize.test_optimize_new_scipy ... ok dipy.core.tests.test_optimize.test_optimize_old_scipy ... SKIP: Skipping test: test_optimize_old_scipy: Test skipped due to test condition dipy.core.tests.test_optimize.test_sklearn_linear_solver ... ok dipy.core.tests.test_optimize.test_nonnegativeleastsquares ... ok dipy.core.tests.test_optimize.test_spdot ... ok dipy.core.tests.test_optimize.test_sparse_nnls ... ok dipy.core.tests.test_sphere.test_sphere_construct_args ... ok dipy.core.tests.test_sphere.test_sphere_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_not_unit ... ok dipy.core.tests.test_sphere.test_bad_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_construct ... ok dipy.core.tests.test_sphere.test_unique_edges ... ok dipy.core.tests.test_sphere.test_unique_sets ... ok dipy.core.tests.test_sphere.test_faces_from_sphere_vertices ... ok dipy.core.tests.test_sphere.test_sphere_attrs ... ok dipy.core.tests.test_sphere.test_edges_faces ... ok dipy.core.tests.test_sphere.test_sphere_subdivide ... ok dipy.core.tests.test_sphere.test_sphere_find_closest ... ok dipy.core.tests.test_sphere.test_hemisphere_find_closest ... ok dipy.core.tests.test_sphere.test_hemisphere_subdivide ... ok dipy.core.tests.test_sphere.test_hemisphere_constructor ... ok dipy.core.tests.test_sphere.test_mirror ... ok dipy.core.tests.test_sphere.test_hemisphere_faces ... ok dipy.core.tests.test_sphere.test_get_force ... ok dipy.core.tests.test_sphere.test_disperse_charges ... ok dipy.core.tests.test_sphere.test_interp_rbf ... ok dipy.core.tests.test_subdivide_octahedron.test_create_unit_sphere ... ok dipy.denoise.tests.test_ascm.test_ascm_static ... ok dipy.denoise.tests.test_ascm.test_ascm_random_noise ... ok dipy.denoise.tests.test_ascm.test_ascm_rmse_with_nlmeans ... ok dipy.denoise.tests.test_ascm.test_sharpness ... ok dipy.denoise.tests.test_ascm.test_ascm_accuracy ... ok dipy.denoise.tests.test_denoise.test_denoise ... ok Test if the kernel values are correct by comparison against the values ... ok Test if a convolution with a delta spike is equal to the kernel ... ok Test the normalization routine applied after a convolution ... ok Test the kernel for inputs of type Sphere, type int and for input None ... ok dipy.denoise.tests.test_lpca.test_lpca_static ... ok dipy.denoise.tests.test_lpca.test_lpca_random_noise ... ok dipy.denoise.tests.test_lpca.test_lpca_boundary_behaviour ... ok dipy.denoise.tests.test_lpca.test_lpca_rmse ... ok dipy.denoise.tests.test_lpca.test_lpca_sharpness ... ok dipy.denoise.tests.test_lpca.test_lpca_dtype ... ok dipy.denoise.tests.test_lpca.test_lpca_wrong ... ok dipy.denoise.tests.test_lpca.test_phantom ... ok dipy.denoise.tests.test_lpca.test_lpca_ill_conditioned ... ok dipy.denoise.tests.test_lpca.test_lpca_sigma_wrong_shape ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_padding ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_static ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_wrong ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_random_noise ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_boundary ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_4D_and_mask ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_dtype ... ok dipy.denoise.tests.test_nlmeans.test_nlmeans_4d_3dsigma_and_threads ... ok dipy.denoise.tests.test_noise_estimate.test_inv_nchi ... ok dipy.denoise.tests.test_noise_estimate.test_piesno ... ok dipy.denoise.tests.test_noise_estimate.test_estimate_sigma ... ok dipy.denoise.tests.test_noise_estimate.test_pca_noise_estimate ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_static ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_random_noise ... ok dipy.denoise.tests.test_non_local_means.test_scalar_sigma ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_boundary ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_wrong ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_4D_and_mask ... ok dipy.denoise.tests.test_non_local_means.test_nlmeans_dtype ... ok dipy.direction.tests.test_peaks.test_peak_directions_nl ... ok dipy.direction.tests.test_peaks.test_OdfFit ... ok dipy.direction.tests.test_peaks.test_peak_directions ... ok dipy.direction.tests.test_peaks.test_peak_directions_thorough ... ok dipy.direction.tests.test_peaks.test_difference_with_minmax ... ok dipy.direction.tests.test_peaks.test_degenerative_cases ... ok dipy.direction.tests.test_peaks.test_peaksFromModel ... ok dipy.direction.tests.test_peaks.test_peaks_shm_coeff ... ok dipy.direction.tests.test_peaks.test_reshape_peaks_for_visualization ... ok dipy.direction.tests.test_prob_direction_getter.test_ProbabilisticDirectionGetter ... ok dipy.io.tests.test_bvectxt.test_orientation_from_to_string ... ok dipy.io.tests.test_bvectxt.test_reorient_vectors ... ok dipy.io.tests.test_dpy.test_dpy ... ok dipy.io.tests.test_io.test_imports ... ok dipy.io.tests.test_io_gradients.test_read_bvals_bvecs ... ok dipy.io.tests.test_io_peaks.test_io_peaks ... 659e-05, 2.39374615e-05, 2.40208011e-07, 3.15511002e-07, -8.12591247e-08, 5.68463753e-07, -2.75976573e-07, 3.94143169e-07], [ 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 0.00000000e+00, 1.00000000e+00, 0.00000000e+00], [ -4.39490006e-10, -4.87198828e-11, 1.50924876e-10, -1.27390680e-09, 1.17747761e-09, 8.08278856e-09, -2.13400565e-11, 5.16948786e-11, -1.93202740e-11, 1.32502258e-10, -1.06697161e-11, -2.75639507e-11]]) fun: 5.8620852415663412e-14 message: 'Optimization terminated successfully.' nfev: 8193 nit: 45 status: 0 success: True x: array([ 1.25024066e-07, -2.82572850e-07, 1.51899506e-07, 5.67909290e-03, -1.34928602e-02, -2.31023787e-04, 9.99980491e-01, 9.99993422e-01, 1.00007347e+00, -1.90408997e-05, 2.08556348e-04, 8.68103935e-05]) first rigid then similarity then affine B-values shape (7,) min 0.000000 max 1500.000000 B-vectors shape (7, 3) min 0.000000 max 1.000000 Nodes {'a': 5, 'c': 10, 'b': 6, 'd': 11} Successors {'a': {'b': True}, 'c': {'d': True}, 'b': {'c': True, 'd': True}, 'd': {}} Predecessors {'a': {}, 'c': {'b': True}, 'b': {'a': True}, 'd': {'c': True, 'b': True}} Paths above d [['d', 'c', 'b', 'a'], ['d', 'b', 'a']] Paths below a [['a', 'b', 'c', 'd'], ['a', 'b', 'd']] Shortest path above d ['d', 'b', 'a'] Shortest path below a ['a', 'b', 'd'] Deleting node b Nodes {'a': 5, 'c': 10, 'd': 11} Successors {'a': {'c': True, 'd': True}, 'c': {'d': True}, 'd': {}} Predecessors {'a': {}, 'c': {'a': True}, 'd': {'a': True, 'c': True}} fun: 1.1908915926500003e-16 hess_inv: <3x3 LbfgsInvHessProduct with dtype=float64> jac: array([ -2.60101368e-09, -2.60101368e-09, -2.60101368e-09]) message: 'CONVERGENCE: NORM_OF_PROJECTED_GRADIENT_<=_PGTOL' nfev: 12 nit: 2 status: 0 success: True x: array([ -6.30050684e-09, -6.30050684e-09, -6.30050684e-09]) (99.991652752812655, 91.792785677658429, 108.0375671572442) (100.00752850385123, 95.55100941257146, 103.65755464270515) ('Original RMSE', 0.17002868103828456) ('Smaller patch RMSE', 0.050942460894647386) ('Larger patch RMSE', 0.040243680112314668) ('ASCM RMSE', 0.045491686192665082) ('Edge gradient smaller patch', 3.0650886408013776) ('Edge gradient larger patch', 13.273299216505869) ('Edge gradient ASCM', 3.2467559309896359) The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 (100.00323045046665, 91.959741834571972, 108.03657805997267) (100.02011504607209, 99.44556313900118, 100.61622128115476) 298.516401183 102.499022351 cpu count 4 1 32.2626681328 All 10.3159561157 2 17.2824819088 (array([], shape=(0, 3), dtype=float64), array([], dtype=float64), array([], dtype=int64)) (array([[ 5.25406812e-02, -9.98618785e-01, 6.12323400e-17]]), array([ 0.02]), array([0])) (array([], shape=(0, 3), dtype=float64), array([], dtype=float64), array([], dtype=int64)) 3 PAM5 version 0.0.1 Affine [[ 1. 0. 0. 0.] [ 0. 1. 0. 0.] [ 0. 0. 1. 0.] [ 0. 0. 0. 1.]] Dirs shape (10, 10, 10, 5, 3) SH shape (10, 10, 10, 45) ODF shape (10, 10, 10, 724) Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) PAM5 version 0.0.1 Affine None Dirs shape (10, 10, 10, 5, 3) SH shape (10, 10, 10, 45) ODF shape (10, 10, 10, 724) Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) PAM5 version 0.0.1 Affine [[ 1. 0. 0. 0.] [ 0. 1. 0. 0.] [ 0. 0. 1. 0.] [ 0. 0. 0. 1.]] Dirs shape (10, 10, 10, 5, 3) SH shape (10ok dipy.io.tests.test_io_peaks.test_io_save_peaks_error ... ok dipy.reconst.tests.test_cache.test_basic_cache ... ok Test the calculation of the coefficient of determination ... ok Test k-fold cross-validation ... ok dipy.reconst.tests.test_cross_validation.test_csd_xval ... ok Test that if you try to do this with a model that doesn't have a `predict` ... ok Test the recursive response calibration method. ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/sphere.py:188: UserWarning: Vertices are not on the unit sphere. warnings.warn("Vertices are not on the unit sphere.") ok dipy.reconst.tests.test_csdeconv.test_auto_response ... ok dipy.reconst.tests.test_csdeconv.test_response_from_mask ... ok dipy.reconst.tests.test_csdeconv.test_csdeconv ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:878: UserWarning: No voxel with a FA higher than 1 were found. Try a larger roi or a lower threshold. warnings.warn(msg, UserWarning) /usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py:2909: RuntimeWarning: Mean of empty slice. out=out, **kwargs) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:80: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) /usr/lib/python2.7/dist-packages/numpy/core/fromnumeric.py:2909: RuntimeWarning: Mean of empty slice. out=out, **kwargs) /usr/lib/python2.7/dist-packages/numpy/core/_methods.py:73: RuntimeWarning: invalid value encountered in true_divide ret, rcount, out=ret, casting='unsafe', subok=False) ok dipy.reconst.tests.test_csdeconv.test_odfdeconv ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:322: RuntimeWarning: invalid value encountered in true_divide odf_sh /= Z ok dipy.reconst.tests.test_csdeconv.test_odf_sh_to_sharp ... ok dipy.reconst.tests.test_csdeconv.test_forward_sdeconv_mat ... ok dipy.reconst.tests.test_csdeconv.test_r2_term_odf_sharp ... ok Test prediction API ... ok Check that we can predict reasonably from multi-voxel fits: ... ok Check that mirroring regularization sphere does not change the result of ... ok We check that the default value of lambda is the expected value with ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:130: UserWarning: Number of parameters required for the fit are more than the actual data points warnings.warn(msg, UserWarning) ok Check the quality of csdfit with high SH order. ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/csdeconv.py:130: UserWarning: Number of parameters required for the fit are more than the actual data points warnings.warn(msg, UserWarning) ok dipy.reconst.tests.test_dki.test_positive_evals ... ok dipy.reconst.tests.test_dki.test_split_dki_param ... ok DKI fits are tested on noise free crossing fiber simulates ... ok Apparent kurtosis coeficients are tested for a spherical kurtosis ... ok dipy.reconst.tests.test_dki.test_dki_predict ... ok dipy.reconst.tests.test_dki.test_carlson_rf ... ok dipy.reconst.tests.test_dki.test_carlson_rd ... ok dipy.reconst.tests.test_dki.test_Wrotate_single_fiber ... ok dipy.reconst.tests.test_dki.test_Wrotate_crossing_fibers ... ok dipy.reconst.tests.test_dki.test_Wcons ... ok dipy.reconst.tests.test_dki.test_spherical_dki_statistics ... ok dipy.reconst.tests.test_dki.test_compare_MK_method ... ok dipy.reconst.tests.test_dki.test_single_voxel_DKI_stats ... ok dipy.reconst.tests.test_dki.test_compare_RK_methods ... ok dipy.reconst.tests.test_dki.test_MK_singularities ... ok dipy.reconst.tests.test_dki.test_dki_errors ... ok dipy.reconst.tests.test_dki.test_kurtosis_maximum ... ok dipy.reconst.tests.test_dki.test_multi_voxel_kurtosis_maximum ... ok dipy.reconst.tests.test_dki_micro.test_single_fiber_model ... ok dipy.reconst.tests.test_dki_micro.test_wmti_model_multi_voxel ... ok dipy.reconst.tests.test_dki_micro.test_dki_micro_predict_single_voxel ... ok dipy.reconst.tests.test_dki_micro.test_dki_micro_predict_multi_voxel ... ok dipy.reconst.tests.test_dki_micro.test_dki_micro_awf_only ... ok dipy.reconst.tests.test_dki_micro.additional_tortuosity_tests ... ok dipy.reconst.tests.test_dsi.test_dsi ... ok dipy.reconst.tests.test_dsi.test_multivox_dsi ... ok dipy.reconst.tests.test_dsi.test_multib0_dsi ... ok dipy.reconst.tests.test_dsi_deconv.test_dsi ... ok dipy.reconst.tests.test_dsi_deconv.test_multivox_dsi ... ok dipy.reconst.tests.test_dsi_metrics.test_dsi_metrics ... ok dipy.reconst.tests.test_dti.test_roll_evals ... ok Test that the computation of tensor determinant and norm is correct ... ok dipy.reconst.tests.test_dti.test_odf_with_zeros ... ok dipy.reconst.tests.test_dti.test_tensor_model ... ok dipy.reconst.tests.test_dti.test_indexing_on_tensor_fit ... ok dipy.reconst.tests.test_dti.test_fa_of_zero ... ok dipy.reconst.tests.test_dti.test_ga_of_zero ... ok dipy.reconst.tests.test_dti.test_diffusivities ... ok dipy.reconst.tests.test_dti.test_color_fa ... ok Tests the WLS and LS fitting functions to see if they returns the correct ... ok dipy.reconst.tests.test_dti.test_masked_array_with_tensor ... ok dipy.reconst.tests.test_dti.test_fit_method_error ... ok dipy.reconst.tests.test_dti.test_lower_triangular ... ok dipy.reconst.tests.test_dti.test_from_lower_triangular ... ok dipy.reconst.tests.test_dti.test_all_constant ... ok dipy.reconst.tests.test_dti.test_all_zeros ... ok dipy.reconst.tests.test_dti.test_mask ... ok dipy.reconst.tests.test_dti.test_nnls_jacobian_fucn ... ok Test the implementation of NLLS and RESTORE ... ok Test the implementation of the RESTORE algorithm ... ok Test the implementation of the calculation of apparent diffusion ... ok Test model prediction API ... ok dipy.reconst.tests.test_dti.test_eig_from_lo_tri ... ok dipy.reconst.tests.test_dti.test_min_signal_alone ... ok dipy.reconst.tests.test_dti.test_decompose_tensor_nan ... ok dipy.reconst.tests.test_fwdti.test_fwdti_singlevoxel ... ok dipy.reconst.tests.test_fwdti.test_fwdti_precision ... ok dipy.reconst.tests.test_fwdti.test_fwdti_multi_voxel ... ok dipy.reconst.tests.test_fwdti.test_fwdti_predictions ... ok dipy.reconst.tests.test_fwdti.test_fwdti_errors ... ok dipy.reconst.tests.test_fwdti.test_fwdti_restore ... ok dipy.reconst.tests.test_fwdti.test_cholesky_functions ... ok dipy.reconst.tests.test_fwdti.test_fwdti_jac_multi_voxel ... ok dipy.reconst.tests.test_fwdti.test_standalone_functions ... ok dipy.reconst.tests.test_fwdti.test_md_regularization ... ok dipy.reconst.tests.test_fwdti.test_negative_s0 ... ok dipy.reconst.tests.test_gqi.test_gqi ... ok dipy.reconst.tests.test_gqi.test_mvoxel_gqi ... ok dipy.reconst.tests.test_interpolate.test_NearestNeighborInterpolator ... ok dipy.reconst.tests.test_interpolate.test_TriLinearInterpolator ... ok Test the implementation of the fitting for a single voxel. ... ok Test fitting with multivoxel data. ... ok Test if errors raised in the module are working correctly. ... ok Test whether setting incorrect mask raises and error ... ok Test whether fitting works for S0 > 1. ... ok Test to check if setting bounds for signal where initial value is ... ok Test the model prediction API. ... ok Test the method of IvimFit class ... ok Test if `shape` in `IvimFit` class gives the correct output. ... ok dipy.reconst.tests.test_ivim.test_multiple_b0 ... ok dipy.reconst.tests.test_ivim.test_no_b0 ... ok Test fitting for noisy signals. This tests whether the threshold condition ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:404: UserWarning: x0 obtained from linear fitting is not feasibile as initial guess for leastsq while estimating f and D_star. Using parameters from the linear fit. warnings.warn(warningMsg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:498: UserWarning: x0 is unfeasible for leastsq fitting. Returning x0 values from the linear fit. warnings.warn(warningMsg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:293: UserWarning: Bounds are violated for leastsq fitting. Returning parameters from linear fit warnings.warn(warningMsg, UserWarning) ok Test if the `IvimFit` class returns the correct S0 ... ok Test if the `IvimFit` class returns the correct f ... ok Test if the `IvimFit` class returns the correct D_star ... ok Test if the `IvimFit` class returns the correct D ... ok Test the linear estimates considering a single exponential fit. ... ok Test if the `estimate_f_D_star` returns the correct parameters after a ... ok Test to check the results for the one_stage linear fit. ... ok Test for cases where leastsq fitting fails and the results from a linear ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:404: UserWarning: x0 obtained from linear fitting is not feasibile as initial guess for leastsq while estimating f and D_star. Using parameters from the linear fit. warnings.warn(warningMsg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:498: UserWarning: x0 is unfeasible for leastsq fitting. Returning x0 values from the linear fit. warnings.warn(warningMsg, UserWarning) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:293: UserWarning: Bounds are violated for leastsq fitting. Returning parameters from linear fit warnings.warn(warningMsg, UserWarning) ok Test error handling of the `_leastsq` method works when unfeasible x0 is ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/ivim.py:498: UserWarning: x0 is unfeasible for leastsq fitting. Returning x0 values from the linear fit. warnings.warn(warningMsg, UserWarning) ok dipy.reconst.tests.test_mapmri.test_orthogonality_basis_functions ... /usr/lib/python2.7/dist-packages/scipy/integrate/quadpack.py:364: IntegrationWarning: The occurrence of roundoff error is detected, which prevents the requested tolerance from being achieved. The error may be underestimated. warnings.warn(msg, IntegrationWarning) /usr/lib/python2.7/dist-packages/scipy/integrate/quadpack.py:364: IntegrationWarning: The occurrence of roundoff error is detected, which prevents the requested tolerance from being achieved. The error may be underestimated. warnings.warn(msg, IntegrationWarning) ok dipy.reconst.tests.test_mapmri.test_mapmri_number_of_coefficients ... ok Test initialization conditions ... ok Test initialization conditions ... ok Test initialization conditions ... ok dipy.reconst.tests.test_mapmri.test_mapmri_signal_fitting ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_mapmri.test_mapmri_isotropic_static_scale_factor ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_mapmri.test_mapmri_signal_fitting_over_radial_order ... ok dipy.reconst.tests.test_mapmri.test_mapmri_pdf_integral_unity ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_mapmri.test_mapmri_compare_fitted_pdf_with_multi_tensor ... ok dipy.reconst.tests.test_mapmri.test_mapmri_metrics_anisotropic ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/mapmri.py:786: UserWarning: model bval_threshold must be lower than 2000 for the non_Gaussianity to be physically meaningful [2]. warn(msg) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/mapmri.py:814: UserWarning: Model bval_threshold must be lower than 2000 for the non_Gaussianity to be physically meaningful [2]. warn(msg) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/mapmri.py:854: UserWarning: model bval_threshold must be lower than 2000 for the non_Gaussianity to be physically meaningful [2]. warn(msg) ok dipy.reconst.tests.test_mapmri.test_mapmri_metrics_isotropic ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_mapmri.test_mapmri_laplacian_anisotropic ... ok dipy.reconst.tests.test_mapmri.test_mapmri_laplacian_isotropic ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_mapmri.test_signal_fitting_equality_anisotropic_isotropic ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_mapmri.test_mapmri_isotropic_design_matrix_separability ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_mapmri.test_estimate_radius_with_rtap ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/sims/voxel.py:218: RuntimeWarning: invalid value encountered in true_divide (2 * np.pi * q * radius) ** 2 /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_mapmri.test_positivity_constraint ... SKIP: Skipping test: test_positivity_constraint: Test skipped due to test condition dipy.reconst.tests.test_mapmri.test_laplacian_regularization ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_mapmri.test_mapmri_odf ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_multi_voxel.test_squash ... /usr/lib/python2.7/dist-packages/numpy/testing/utils.py:761: DeprecationWarning: elementwise == comparison failed; this will raise an error in the future. val = comparison(x, y) /usr/lib/python2.7/dist-packages/numpy/testing/utils.py:761: DeprecationWarning: elementwise == comparison failed; this will raise an error in the future. val = comparison(x, y) /usr/lib/python2.7/dist-packages/numpy/testing/utils.py:761: DeprecationWarning: elementwise == comparison failed; this will raise an error in the future. val = comparison(x, y) ok dipy.reconst.tests.test_multi_voxel.test_CallableArray ... ok dipy.reconst.tests.test_multi_voxel.test_multi_voxel_fit ... ok dipy.reconst.tests.test_odf.test_OdfFit ... ok dipy.reconst.tests.test_odf.test_minmax_normalize ... ok dipy.reconst.tests.test_odf.test_gfa ... ok dipy.reconst.tests.test_peak_finding.test_local_maxima ... ok dipy.reconst.tests.test_peak_finding.test_remove_similar_peaks ... ok dipy.reconst.tests.test_peak_finding.test_search_descending ... ok dipy.reconst.tests.test_peakdf.test_PeaksAndMetricsDirectionGetter ... ok dipy.reconst.tests.test_reco_utils.test_adj_countarrs ... ok dipy.reconst.tests.test_reco_utils.test_argmax_from_countarrs ... ok dipy.reconst.tests.test_sfm.test_design_matrix ... ok dipy.reconst.tests.test_sfm.test_sfm ... SKIP: Skipping test: test_sfm: Test skipped due to test condition dipy.reconst.tests.test_sfm.test_predict ... SKIP: Skipping test: test_predict: Test skipped due to test condition dipy.reconst.tests.test_sfm.test_sfm_background ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:414: RuntimeWarning: divide by zero encountered in divide flat_S0[..., None]) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/reconst/sfm.py:61: RuntimeWarning: divide by zero encountered in divide to_fit[nzb0_idx] = data_no_b0[nzb0_idx] / s0[nzb0_idx[0]] ok dipy.reconst.tests.test_sfm.test_sfm_stick ... ok dipy.reconst.tests.test_sfm.test_sfm_sklearnlinearsolver ... ok dipy.reconst.tests.test_sfm.test_exponential_iso ... SKIP: Skipping test: test_exponential_iso: Test skipped due to test condition dipy.reconst.tests.test_shm.TestCsaOdfModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestCsaOdfModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestOpdtModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.TestQballModel.test_gfa ... ok dipy.reconst.tests.test_shm.TestQballModel.test_mulit_voxel_fit ... ok dipy.reconst.tests.test_shm.TestQballModel.test_sh_order ... ok dipy.reconst.tests.test_shm.TestQballModel.test_single_voxel_fit ... ok dipy.reconst.tests.test_shm.test_order_from_ncoeff ... ok dipy.reconst.tests.test_shm.test_sph_harm_ind_list ... ok dipy.reconst.tests.test_shm.test_real_sph_harm ... ok dipy.reconst.tests.test_shm.test_real_sym_sh_mrtrix ... ok dipy.reconst.tests.test_shm.test_real_sym_sh_basis ... ok dipy.reconst.tests.test_shm.test_smooth_pinv ... ok dipy.reconst.tests.test_shm.test_normalize_data ... ok dipy.reconst.tests.test_shm.test_SphHarmFit ... ok dipy.reconst.tests.test_shm.test_hat_and_lcr ... ok dipy.reconst.tests.test_shm.test_bootstrap_array ... ok dipy.reconst.tests.test_shm.test_ResidualBootstrapWrapper ... ok dipy.reconst.tests.test_shm.test_sf_to_sh ... ok dipy.reconst.tests.test_shm.test_faster_sph_harm ... ok dipy.reconst.tests.test_shm.test_anisotropic_power ... ok Based on the table in: ... ok dipy.reconst.tests.test_shore.test_shore_positive_constrain ... SKIP: Skipping test: test_shore_positive_constrain: Test skipped due to test condition dipy.reconst.tests.test_shore.test_shore_fitting_no_constrain_e0 ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_shore.test_shore_fitting_constrain_e0 ... SKIP: Skipping test: test_shore_fitting_constrain_e0: Test skipped due to test condition dipy.reconst.tests.test_shore_metrics.test_shore_metrics ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_shore_odf.test_shore_odf ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_shore_odf.test_multivox_shore ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/core/geometry.py:129: RuntimeWarning: invalid value encountered in true_divide theta = np.arccos(z / r) ok dipy.reconst.tests.test_vec_val_vect.test_vec_val_vect ... ok dipy.reconst.tests.test_vec_val_vect.test_vec_val_vect_dumber ... ok dipy.segment.tests.test_adjustment.test_adjustment ... ok dipy.segment.tests.test_clustering.test_cluster_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_assign ... ok dipy.segment.tests.test_clustering.test_cluster_iter ... ok dipy.segment.tests.test_clustering.test_cluster_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_str_and_repr ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_assign ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_iter ... ok dipy.segment.tests.test_clustering.test_cluster_centroid_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_map_add_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_remove_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_clear ... ok dipy.segment.tests.test_clustering.test_cluster_map_iter ... ok dipy.segment.tests.test_clustering.test_cluster_map_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_str_and_repr ... ok dipy.segment.tests.test_clustering.test_cluster_map_size ... ok dipy.segment.tests.test_clustering.test_cluster_map_clusters_sizes ... ok dipy.segment.tests.test_clustering.test_cluster_map_get_small_and_large_clusters ... ok dipy.segment.tests.test_clustering.test_cluster_map_comparison_with_int ... ok dipy.segment.tests.test_clustering.test_cluster_map_comparison_with_object ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_attributes_and_constructor ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_add_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_remove_cluster ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_iter ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_getitem ... ok dipy.segment.tests.test_clustering.test_cluster_map_centroid_comparison_with_int ... ok dipy.segment.tests.test_clustering.test_subclassing_clustering ... ok dipy.segment.tests.test_feature.test_identity_feature ... ok dipy.segment.tests.test_feature.test_feature_resample ... ok dipy.segment.tests.test_feature.test_feature_center_of_mass ... ok dipy.segment.tests.test_feature.test_feature_midpoint ... ok dipy.segment.tests.test_feature.test_feature_arclength ... ok dipy.segment.tests.test_feature.test_feature_vector_of_endpoints ... ok dipy.segment.tests.test_feature.test_feature_extract ... ok dipy.segment.tests.test_feature.test_subclassing_feature ... ok dipy.segment.tests.test_feature.test_using_python_feature_with_cython_metric ... ok dipy.segment.tests.test_mask.test_mask ... ok dipy.segment.tests.test_mask.test_bounding_box ... ok dipy.segment.tests.test_mask.test_median_otsu ... ok dipy.segment.tests.test_metric.test_metric_minimum_average_direct_flip ... ok dipy.segment.tests.test_metric.test_metric_cosine ... ok dipy.segment.tests.test_metric.test_subclassing_metric ... ok dipy.segment.tests.test_metric.test_distance_matrix ... ok dipy.segment.tests.test_mrf.test_greyscale_image ... , 10, 10, 45) ODF shape (10, 10, 10, 724) Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) PAM5 version 0.0.1 Affine [[ 1. 0. 0. 0.] [ 0. 1. 0. 0.] [ 0. 0. 1. 0.] [ 0. 0. 0. 1.]] Dirs shape (10, 10, 10, 5, 3) SH shape (10, 10, 10, 45) ODF shape None Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) PAM5 version 0.0.1 Affine [[ 1. 0. 0. 0.] [ 0. 1. 0. 0.] [ 0. 0. 1. 0.] [ 0. 0. 0. 1.]] Dirs shape (10, 10, 10, 5, 3) SH shape None ODF shape None Total weight 0.5 Angular threshold 60.0 Sphere vertices shape (724, 3) (256, 256, 5, 4) [[[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] ..., [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] ok dipy.segment.tests.test_mrf.test_greyscale_iter ... ok dipy.segment.tests.test_mrf.test_square_iter ... ok dipy.segment.tests.test_mrf.test_icm_square ... ok dipy.segment.tests.test_mrf.test_classify ... [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]] [[[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] ..., [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]] [[ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572] [ 0.27727178 0.26874102 0.24469148 0.20929572]]]] [ 0. 0.25 0.5 0.75] [ 0.11057956 0.12717534 0.1457706 0.16643355] [ 1. 1. 1. 1.] [ 0.07474418 0.08540787 0.20396497 0.42737855] -1821696.02605 -2290789.40113 -2293558.81479 -2295567.12041 -2296986.07786 -2297995.30267 -2298705.6089 -2299230.6191 -2299397.05051 -2299635.54397 -2299901.45469 -2300119.19781 -2300313.67246 -2300436.94961 -2300512.80908 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 10 >> Iteration: 11 >> Iteration: 12 >> Iteration: 13 >> Iteration: 14 >> Iteration: 15 >> Iteration: 16 >> Iteration: 17 >> Iteration: 18 >> Iteration: 19 >> Iteration: 20 >> Iteration: 21 >> Iteration: 22 >> Iteration: 23 >> Iteration: 24 >> Iteration: 25 >> Iteration: 26 >> Iteration: 27 >> Iteration: 28 >> Iteration: 29 >> Iteration: 30 >> Iteration: 31 >> Iteration: 32 >> Iteration: 33 >> Iteration: 34 >> Iteration: 35 >> Iteration: 36 >> Iteration: 37 >> Iteration: 38 >> Iteration: 39 >> Iteration: 40 >> Iteration: 41 >> Iteration: 42 >> Iteration: 43 >> Iteration: 44 >> Iteration: 45 >> Iteration: 46 >> Iteration: 47 >> Iteration: 48 >> Iteration: 49 >> Iteration: 50 >> Iteration: 51 >> Iteration: 52 >> Iteration: 53 >> Iteration: 54 >> Iteration: 55 >> Iteration: 56 >> Iteration: 57 >> Iteration: 58 >> Iteration: 59 >> Iteration: 60 >> Iteraok dipy.segment.tests.test_qb.test_qbundles ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/segment/quickbundles.py:39: DeprecationWarning: Class 'dipy.segment.quickbundles.QuickBundles' is deprecated, instead use module 'dipy.segment.clustering.QuickBundles'. warn(DeprecationWarning(deprecation_msg)) ok dipy.segment.tests.test_quickbundles.test_quickbundles_empty_data ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_wrong_metric ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_shape_uncompatibility ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_2D ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_streamlines ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_with_not_order_invariant_metric ... ok dipy.segment.tests.test_quickbundles.test_quickbundles_memory_leaks ... ok dipy.sims.tests.test_phantom.test_phantom ... ok dipy.sims.tests.test_phantom.test_add_noise ... ok dipy.sims.tests.test_voxel.test_check_directions ... ok dipy.sims.tests.test_voxel.test_sticks_and_ball ... ok dipy.sims.tests.test_voxel.test_single_tensor ... ok dipy.sims.tests.test_voxel.test_multi_tensor ... ok dipy.sims.tests.test_voxel.test_snr ... ok dipy.sims.tests.test_voxel.test_all_tensor_evecs ... ok Testing symmetry of the elements of the KT ... ok Testing DKI simulations when aligning the same fiber to different axis. ... ok Testing DKI simulations of a crossing fiber ... ok This tests that the Local Tracker behaves as expected for the ... ok dipy.tracking.local.tests.test_local_tracking.test_trilinear_interpolate ... ok This tests that the Probabalistic Direction Getter plays nice ... ok This tests that the Maximum Deterministic Direction Getter plays nice ... ok This tests that the input affine is properly handled by ... ok This tests that the binary tissue classifier returns expected ... ok This tests that the thresholdy tissue classifier returns expected ... ok This tests that the act tissue classifier returns expected ... ok dipy.tracking.tests.test_distances.test_LSCv2 ... ok dipy.tracking.tests.test_distances.test_bundles_distances_mam ... ok dipy.tracking.tests.test_distances.test_bundles_distances_mdf ... ok dipy.tracking.tests.test_distances.test_mam_distances ... ok dipy.tracking.tests.test_distances.test_approx_ei_traj ... ok dipy.tracking.tests.test_distances.test_approx_mdl_traj ... ok dipy.tracking.tests.test_distances.test_point_track_sq_distance ... ok dipy.tracking.tests.test_distances.test_track_roi_intersection_check ... ok dipy.tracking.tests.test_distances.test_minimum_distance ... ok dipy.tracking.tests.test_distances.test_most_similar_mam ... ok dipy.tracking.tests.test_distances.test_cut_plane ... ok Test the FBC measures on a set of fibers ... ok dipy.tracking.tests.test_learning.test_det_corr_tracks ... ok dipy.tracking.tests.test_life.test_streamline_gradients ... ok dipy.tracking.tests.test_life.test_streamline_tensors ... ok dipy.tracking.tests.test_life.test_streamline_signal ... ok dipy.tracking.tests.test_life.test_voxel2streamline ... ok dipy.tracking.tests.test_life.test_FiberModel_init ... ok dipy.tracking.tests.test_life.test_FiberFit ... ok dipy.tracking.tests.test_life.test_fit_data ... ok dipy.tracking.tests.test_localtrack.test_ThresholdTissueClassifier ... ok dipy.tracking.tests.test_metrics.test_downsample ... ok dipy.tracking.tests.test_metrics.test_splines ... ok dipy.tracking.tests.test_metrics.test_segment_intersection ... ok dipy.tracking.tests.test_metrics.test_normalized_3vec ... ok dipy.tracking.tests.test_metrics.test_inner_3vecs ... ok dipy.tracking.tests.test_metrics.test_add_sub_3vecs ... ok dipy.tracking.tests.test_metrics.test_winding ... ok dipy.tracking.tests.test_propagation.test_offset ... ok dipy.tracking.tests.test_propagation.test_trilinear_interp_cubic_voxels ... ok Cause we love testin.. ;-) ... ok Test passing a bad seed to eudx ... ok This test checks that the tracking will exclude seeds in both directions. ... ok dipy.tracking.tests.test_propagation.test_eudx_both_directions_errors ... ok dipy.tracking.tests.test_streamline.test_set_number_of_points ... ok dipy.tracking.tests.test_streamline.test_set_number_of_points_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_length ... ok dipy.tracking.tests.test_streamline.test_length_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_unlist_relist_streamlines ... ok dipy.tracking.tests.test_streamline.test_center_and_transform ... ok dipy.tracking.tests.test_streamline.test_select_random_streamlines ... ok dipy.tracking.tests.test_streamline.test_compress_streamlines ... ok dipy.tracking.tests.test_streamline.test_compress_streamlines_memory_leaks ... ok dipy.tracking.tests.test_streamline.test_select_by_rois ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/streamline.py:245: UserWarning: Tolerance input provided would create gaps in your inclusion ROI. Setting to: warn(w_s) ok dipy.tracking.tests.test_streamline.test_orient_by_rois ... ok dipy.tracking.tests.test_streamline.test_values_from_volume ... ok dipy.tracking.tests.test_track_volumes.test_track_volumes ... ok dipy.tracking.tests.test_utils.test_density_map ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) ok dipy.tracking.tests.test_utils.test_to_voxel_coordinates_precision ... ok dipy.tracking.tests.test_utils.test_connectivity_matrix ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) ok dipy.tracking.tests.test_utils.test_ndbincount ... ok dipy.tracking.tests.test_utils.test_reduce_labels ... ok dipy.tracking.tests.test_utils.test_move_streamlines ... ok dipy.tracking.tests.test_utils.test_target ... ok dipy.tracking.tests.test_utils.test_target_lb ... ok dipy.tracking.tests.test_utils.test_near_roi ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/utils.py:728: UserWarning: Tolerance input provided would create gaps in your inclusion ROI. Setting to: 0.866025403784 warn(w_s) ok dipy.tracking.tests.test_utils.test_voxel_ornt ... ok dipy.tracking.tests.test_utils.test_streamline_mapping ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/_utils.py:11: DeprecationWarning: the voxel_size argument to this function is deprecated, use the affine argument instead warn(m) ok dipy.tracking.tests.test_utils.test_affine_for_trackvis ... ok dipy.tracking.tests.test_utils.test_length ... ok dipy.tracking.tests.test_utils.test_seeds_from_mask ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests/test_utils.py:484: DeprecationWarning: This function is deprecated. Please call randint(0, 1 + 1) instead mask = np.random.random_integers(0, 1, size=(10, 10, 10)) ok dipy.tracking.tests.test_utils.test_random_seeds_from_mask ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/tracking/tests/test_utils.py:506: DeprecationWarning: This function is deprecated. Please call randint(0, 1 + 1) instead mask = np.random.random_integers(0, 1, size=(4, 6, 3)) ok dipy.tracking.tests.test_utils.test_connectivity_matrix_shape ... ok Testing the function unique_coords ... ok dipy.tracking.tests.test_utils.test_reduce_rois ... ok dipy.tracking.tests.test_utils.test_flexi_tvis_affine ... ok dipy.tracking.tests.test_utils.test_get_flexi_tvis_affine ... ok dipy.tracking.tests.test_utils.test_path_length ... ok dipy.tracking.tests.test_utils.test_min_at ... ok dipy.utils.tests.test_arrfuncs.test_as_native ... ok dipy.utils.tests.test_arrfuncs.test_pinv ... ok dipy.utils.tests.test_arrfuncs.test_eigh ... ok dipy.utils.tests.test_omp.test_set_omp_threads ... ok dipy.utils.tests.test_omp.test_default_threads ... ok dipy.utils.tests.test_tripwire.test_is_tripwire ... ok dipy.utils.tests.test_tripwire.test_tripwire ... ok dipy.viz.tests.test_actors.test_bundle_maps ... SKIP: Skipping test: test_bundle_maps: Test skipped due to test condition dipy.viz.tests.test_actors.test_odf_slicer ... SKIP: Skipping test: test_odf_slicer: Test skipped due to test condition dipy.viz.tests.test_actors.test_peak_slicer ... SKIP: Skipping test: test_peak_slicer: Test skipped due to test condition dipy.viz.tests.test_actors.test_slicer ... SKIP: Skipping test: test_slicer: Test skipped due to test condition dipy.viz.tests.test_actors.test_streamtube_and_line_actors ... SKIP: Skipping test: test_streamtube_and_line_actors: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_fvtk_ellipsoid ... SKIP: Skipping test: test_fvtk_ellipsoid: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_fvtk_functions ... SKIP: Skipping test: test_fvtk_functions: Test skipped due to test condition dipy.viz.tests.test_fvtk.test_colormap ... ok dipy.viz.tests.test_fvtk.test_colormaps_matplotlib ... ok SKIP: No vtk for these tests dipy.viz.tests.test_regtools.test_plot_2d_diffeomorphic_map ... ok SKIP: No vtk for these tests dipy.viz.tests.test_utils.test_trilinear_interp ... ok dipy.viz.tests.test_widgets.test_button_and_slider_widgets ... SKIP: Skipping test: test_button_and_slider_widgets: Test skipped due to test condition dipy.viz.tests.test_widgets.test_text_widget ... SKIP: Skipping test: test_text_widget: Test skipped due to test condition dipy.viz.tests.test_window.test_active_camera ... SKIP: Skipping test: test_active_camera: Test skipped due to test condition dipy.viz.tests.test_window.test_order_transparent ... SKIP: Skipping test: test_order_transparent: Test skipped due to test condition dipy.viz.tests.test_window.test_parallel_projection ... SKIP: Skipping test: test_parallel_projection: Test skipped due to test condition dipy.viz.tests.test_window.test_renderer ... SKIP: Skipping test: test_renderer: Test skipped due to test condition dipy.workflows.tests.test_docstring_parser.test_signature ... ok dipy.workflows.tests.test_docstring_parser.test_summary ... ok dipy.workflows.tests.test_docstring_parser.test_extended_summary ... ok dipy.workflows.tests.test_docstring_parser.test_parameters ... ok dipy.workflows.tests.test_docstring_parser.test_other_parameters ... ok dipy.workflows.tests.test_docstring_parser.test_returns ... ok dipy.workflows.tests.test_docstring_parser.test_notes ... ok dipy.workflows.tests.test_docstring_parser.test_references ... ok dipy.workflows.tests.test_docstring_parser.test_examples ... ok dipy.workflows.tests.test_docstring_parser.test_index ... ok dipy.workflows.tests.test_docstring_parser.test_str ... ok dipy.workflows.tests.test_docstring_parser.test_parameters_without_extended_description ... ok dipy.workflows.tests.test_docstring_parser.test_raises ... ok dipy.workflows.tests.test_docstring_parser.test_warns ... ok dipy.workflows.tests.test_docstring_parser.test_see_also ... ok dipy.workflows.tests.test_docstring_parser.test_empty_first_line ... ok dipy.workflows.tests.test_docstring_parser.test_duplicate_signature ... ok dipy.workflows.tests.test_iap.test_iap ... ok dipy.workflows.tests.test_iap.test_iap_epilog ... ok dipy.workflows.tests.test_iap.test_flow_runner ... ok dipy.workflows.tests.test_masking.test_mask ... ok dipy.workflows.tests.test_reconst_csa_csd.test_reconst_csa ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests/test_reconst_csa_csd.py:28: DeprecationWarning: get_affine method is deprecated. Please use the ``img.affine`` property instead. * deprecated from version: 2.1 * Will raise as of version: 4.0 mask_img = nib.Nifti1Image(mask.astype(np.uint8), vol_img.get_affine()) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/reconst.py:453: DeprecationWarning: get_affine method is deprecated. Please use the ``img.affine`` property instead. * deprecated from version: 2.1 * Will raise as of version: 4.0 affine = vol.get_affine() ok dipy.workflows.tests.test_reconst_csa_csd.test_reconst_csd ... /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/tests/test_reconst_csa_csd.py:28: DeprecationWarning: get_affine method is deprecated. Please use the ``img.affine`` property instead. * deprecated from version: 2.1 * Will raise as of version: 4.0 mask_img = nib.Nifti1Image(mask.astype(np.uint8), vol_img.get_affine()) /<>/debian/tmp/usr/lib/python2.7/dist-packages/dipy/workflows/reconst.py:329: DeprecationWarning: get_affine method is deprecated. Please use the ``img.affine`` property instead. * deprecated from version: 2.1 * Will raise as of version: 4.0 affine = vol.get_affine() ok dipy.workflows.tests.test_reconst_dti.test_reconst_dti_restore ... ok dipy.workflows.tests.test_reconst_dti.test_reconst_dti_nlls ... ok dipy.workflows.tests.test_segment.test_median_otsu_flow ... ok dipy.workflows.tests.test_workflow.test_force_overwrite ... ok dipy.workflows.tests.test_workflow.test_get_sub_runs ... ok dipy.workflows.tests.test_workflow.test_run ... ok Set numpy print options to "legacy" for new versions of numpy ... ok dipy.testing.tests.test_decorators.test_skipper ... ok dipy.testing.tests.test_memory.test_get_type_refcount ... ok ---------------------------------------------------------------------- Ran 638 tests in 821.399s OK (SKIP=22) tion: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 10 >> Iteration: 11 >> Iteration: 12 >> Iteration: 13 >> Iteration: 14 >> Iteration: 15 >> Iteration: 16 >> Iteration: 17 >> Iteration: 18 >> Iteration: 19 >> Iteration: 20 >> Iteration: 21 >> Iteration: 22 >> Iteration: 23 >> Iteration: 24 >> Iteration: 25 >> Iteration: 26 >> Iteration: 27 >> Iteration: 28 >> Iteration: 29 >> Iteration: 30 >> Iteration: 31 >> Iteration: 32 >> Iteration: 33 >> Iteration: 34 >> Iteration: 35 >> Iteration: 36 >> Iteration: 37 >> Iteration: 38 >> Iteration: 39 >> Iteration: 40 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 10 >> Iteration: 0 >> Iteration: 1 >> Iteration: 2 >> Iteration: 3 >> Iteration: 4 >> Iteration: 5 >> Iteration: 6 >> Iteration: 7 >> Iteration: 8 >> Iteration: 9 >> Iteration: 10 >> Iteration: 11 >> Iteration: 12 >> Iteration: 13 >> Iteration: 14 >> Iteration: 15 >> Iteration: 16 >> Iteration: 17 >> Iteration: 18 >> Iteration: 19 >> Iteration: 20 >> Iteration: 21 >> Iteration: 22 >> Iteration: 23 >> Iteration: 24 >> Iteration: 25 >> Iteration: 26 >> Iteration: 27 >> Iteration: 28 >> Iteration: 29 >> Iteration: 30 >> Iteration: 31 >> Iteration: 32 >> Iteration: 33 >> Iteration: 34 >> Iteration: 35 >> Iteration: 36 >> Iteration: 37 >> Iteration: 38 >> Iteration: 39 >> Iteration: 40 0.000349044799805 12 0.00585317611694 12 0.333261966705 162 lenT3 300 lenC 4 [[ 2.00658822] [ 2.05195689]] [[ 2.0065883 ] [ 2.05195713]] -------------- [[ 0. 0. 0.] [ 1. 0. 0.] [ 2. 0. 0.]] [[ 0. 0. 0.] [ 1. 0. 0.] [ 3. 0. 0.]] -------------- [[ 0. 1. 1.] [ 1. 0. 1.] [ 2. 3. -2.]] The kernel doesn't exist yet. Computing... Dimensions of kernel: 7x7x7 Running in parallel! [[0 0 0] [1 1 1] [2 2 2]] [[1 0 0] [2 0 0] [3 0 0]] [[ 0 0 -1] [ 0 0 -2] [ 0 0 -3]] [[0 1] [1 0]] [[0 1] [1 0]] (6, 10, 10, 102) Creating scale space from the moving image. Levels: 4. Sigma factor: 0.200000. Creating scale space from the static image. Levels: 4. Sigma factor: 0.200000. Optimizing level 3 Optimizing level 2 Optimizing level 1 Optimizing level 0 make[1]: Leaving directory '/<>' dh_install -O--buildsystem=python_distutils dh_install: Compatibility levels before 9 are deprecated (level 7 in use) dh_installdocs -O--buildsystem=python_distutils dh_installdocs: Compatibility levels before 9 are deprecated (level 7 in use) dh_installchangelogs -O--buildsystem=python_distutils debian/rules override_dh_python2 make[1]: Entering directory '/<>' if [ -d debian/python-dipy/usr/lib ]; then \ find debian/python-dipy/usr/lib -name "*.so" -delete; \ fi [ -e /usr/bin/dh_numpy ] && dh_numpy -ppython-dipy-lib || : dh_python2 W: dh_python2:479: Please add dh-python package to Build-Depends dh --buildsystem=python_distutils override_dh_python2 --with python2 dh: Compatibility levels before 9 are deprecated (level 7 in use) make[1]: Leaving directory '/<>' dh_perl -O--buildsystem=python_distutils dh_link -O--buildsystem=python_distutils dh_link: Compatibility levels before 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are deprecated (level 7 in use) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/segment/mrf.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/align/transforms.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/denoise/denspeed.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/segment/clusteringspeed.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/tracking/vox2track.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/align/vector_fields.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/segment/clustering_algorithms.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/reconst/quick_squash.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/tracking/local/direction_getter.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/align/sumsqdiff.so 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debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/utils/omp.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/align/bundlemin.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/segment/cythonutils.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/segment/featurespeed.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/align/expectmax.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/tracking/propspeed.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/tracking/fbcmeasures.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/denoise/nlmeans_block.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/tracking/local/localtrack.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/align/crosscorr.so debian/python-dipy-lib/usr/lib/python2.7/dist-packages/dipy/reconst/recspeed.so were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb -O--buildsystem=python_distutils dh_installdeb: Compatibility levels before 9 are deprecated (level 7 in use) dh_gencontrol -O--buildsystem=python_distutils dpkg-gencontrol: warning: Depends field of package python-dipy: unknown substitution variable ${shlibs:Depends} dh_md5sums -O--buildsystem=python_distutils dh_builddeb -O--buildsystem=python_distutils INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing python-dipy-doc (in debian/python-dipy-doc); do_strip: , oemstrip: pkgstriptranslations: processing python-dipy-lib (in debian/python-dipy-lib); do_strip: , oemstrip: pkgstriptranslations: processing python-dipy-lib-dbgsym (in debian/.debhelper/python-dipy-lib/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing python-dipy (in debian/python-dipy); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python-dipy-doc/DEBIAN/control, package python-dipy-doc, directory debian/python-dipy-doc INFO: pkgstripfiles: waiting for lock (python-dipy-doc) ... pkgstripfiles: processing control file: debian/.debhelper/python-dipy-lib/dbgsym-root/DEBIAN/control, package python-dipy-lib-dbgsym, directory debian/.debhelper/python-dipy-lib/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-dipy-lib-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-dipy-lib-dbgsym' in 'debian/.debhelper/scratch-space/build-python-dipy-lib/python-dipy-lib-dbgsym_0.13.0-2_amd64.deb'. pkgstripfiles: processing control file: debian/python-dipy-lib/DEBIAN/control, package python-dipy-lib, directory debian/python-dipy-lib INFO: pkgstripfiles: waiting for lock (python-dipy-lib) ... INFO: pkgstripfiles: waiting for lock (python-dipy-doc) ... INFO: pkgstripfiles: waiting for lock (python-dipy-lib) ... INFO: pkgstripfiles: waiting for lock (python-dipy-doc) ... INFO: pkgstripfiles: waiting for lock (python-dipy-lib) ... INFO: pkgstripfiles: waiting for lock (python-dipy-doc) ... INFO: pkgstripfiles: waiting for lock (python-dipy-lib) ... INFO: pkgstripfiles: waiting for lock (python-dipy-doc) ... INFO: pkgstripfiles: waiting for lock (python-dipy-lib) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " Renaming python-dipy-lib-dbgsym_0.13.0-2_amd64.deb to python-dipy-lib-dbgsym_0.13.0-2_amd64.ddeb pkgstripfiles: processing control file: debian/python-dipy/DEBIAN/control, package python-dipy, directory debian/python-dipy Searching for duplicated docs in dependency python-dipy-lib... symlinking changelog.Debian.gz in python-dipy to file in python-dipy-lib pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-dipy ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-dipy' in '../python-dipy_0.13.0-2_all.deb'. INFO: pkgstripfiles: waiting for lock (python-dipy-doc) ... pkgstripfiles: Truncating usr/share/doc/python-dipy-lib/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-dipy-lib ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-dipy-lib' in '../python-dipy-lib_0.13.0-2_amd64.deb'. pkgstripfiles: Truncating usr/share/doc/python-dipy-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package python-dipy-doc (to save build time) dpkg-deb: building package 'python-dipy-doc' in '../python-dipy-doc_0.13.0-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../dipy_0.13.0-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build dipy-0.13.0 dpkg-source: info: using options from dipy-0.13.0/debian/source/options: --extend-diff-ignore=(^|/)dipy/COMMIT_INFO.txt$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171206-0741 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ dipy_0.13.0-2_amd64.changes: ---------------------------- Format: 1.8 Date: Sat, 25 Nov 2017 00:41:46 -0500 Source: dipy Binary: python-dipy python-dipy-lib python-dipy-doc Architecture: all amd64 Version: 0.13.0-2 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Yaroslav Halchenko Description: python-dipy - Python library for the analysis of diffusion MRI datasets python-dipy-doc - Python library for the analysis of diffusion MRI datasets -- docu python-dipy-lib - Python library for the analysis of diffusion MRI datasets -- exte Changes: dipy (0.13.0-2) unstable; urgency=medium . * debian/patches/1300.diff to mitigate failing tests on 32bit Checksums-Sha1: 1e7bc09699be2bb7d2a6cad3ab975a8f1694a8b4 9983 dipy_0.13.0-2_amd64.buildinfo b7ccda11160d6ef6279f11c069e57d28cef087c1 10772200 python-dipy-doc_0.13.0-2_all.deb c0a7fdde5266586ebf5605af520fc15707bf3619 8272860 python-dipy-lib-dbgsym_0.13.0-2_amd64.ddeb 96945a182b424ec0d5bc95081ba4ba9fd291b36f 1927752 python-dipy-lib_0.13.0-2_amd64.deb 6c14574ea97361dc3601aecc357bc641eadb87a9 3015212 python-dipy_0.13.0-2_all.deb Checksums-Sha256: 3ac5fe0c4f0fc56797675b6baedc3d6b7a5f70152316ee421eda136ee9f42a15 9983 dipy_0.13.0-2_amd64.buildinfo 2dc2b0793864996396302682a3e718fc0fd5ebd1dcd02f6fe359d935868f4168 10772200 python-dipy-doc_0.13.0-2_all.deb 4c2661020db50b6852afa086f87298fb62c210a7c80d34f0edec702891cbe110 8272860 python-dipy-lib-dbgsym_0.13.0-2_amd64.ddeb aac43e4193ef1a5d2429692cdc3c0ea728f24ac593886773fc86b7829ad5d605 1927752 python-dipy-lib_0.13.0-2_amd64.deb 33385e067fe3bf8a590c8daf48330e05c68d6199145f02f9c393429e14c8c63c 3015212 python-dipy_0.13.0-2_all.deb Files: 7f76b3dd51bbbc0adfe5ca75caa21064 9983 python extra dipy_0.13.0-2_amd64.buildinfo 8952ac3be477ce9c0178c5ab622ad588 10772200 doc extra python-dipy-doc_0.13.0-2_all.deb fbffa54fd4a27efb03523db87fbbc7a4 8272860 debug optional python-dipy-lib-dbgsym_0.13.0-2_amd64.ddeb 832fa47f520271aa44267abb1ce27e87 1927752 python extra python-dipy-lib_0.13.0-2_amd64.deb 58a3fec54a0c93b34321359171f9778c 3015212 python extra python-dipy_0.13.0-2_all.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python-dipy-doc_0.13.0-2_all.deb -------------------------------- new debian package, version 2.0. size 10772200 bytes: control archive=9244 bytes. 558 bytes, 17 lines control 32196 bytes, 329 lines md5sums Package: python-dipy-doc Source: dipy Version: 0.13.0-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: NeuroDebian Team Installed-Size: 14553 Depends: libjs-jquery Suggests: python-dipy Section: doc Priority: extra Homepage: http://dipy.org Description: Python library for the analysis of diffusion MRI datasets -- documentation DIPY is a library for the analysis of diffusion magnetic resonance imaging data. . 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new debian package, version 2.0. size 3015212 bytes: control archive=11092 bytes. 1803 bytes, 37 lines control 35936 bytes, 384 lines md5sums 161 bytes, 9 lines * postinst #!/bin/sh 259 bytes, 14 lines * prerm #!/bin/sh Package: python-dipy Source: dipy Version: 0.13.0-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: NeuroDebian Team Installed-Size: 6959 Depends: python (<< 2.8), python (>= 2.7), python:any (>= 2.6.6-7~), python-numpy (>= 1:1.7.1~), python-scipy, python-h5py, python-dipy-lib (>= 0.13.0-2) Recommends: python-matplotlib, python-vtk, python-nose, python-nibabel Suggests: ipython Provides: python2.7-dipy Section: python Priority: extra Homepage: http://dipy.org Description: Python library for the analysis of diffusion MRI datasets DIPY is a software project for computational neuroanatomy. It focuses on diffusion magnetic resonance imaging (dMRI) analysis and tractography but also contains implementations of other computational imaging methods such as denoising and registration that are applicable to the greater medical imaging and image processing communities. Additionally, DIPY is an international project which brings together scientists across labs and countries to share their state-of-the-art code and expertise in the same codebase, accelerating scientific research in medical imaging. . Here are some of the highlights: - Reconstruction algorithms: CSD, DSI, GQI, DTI, DKI, QBI, SHORE and MAPMRI - Fiber tracking algorithms: deterministic and probabilistic - Native linear and nonlinear registration of images - Fast operations on streamlines (selection, resampling, registration) - Tractography segmentation and clustering - Many image operations, e.g., reslicing or denoising with NLMEANS - Estimation of distances/correspondences between streamlines and connectivity matrices - Interactive visualization of streamlines in the space of images Python-Version: 2.7 drwxr-xr-x root/root 0 2017-11-25 05:41 ./ drwxr-xr-x root/root 0 2017-11-25 05:41 ./usr/ drwxr-xr-x root/root 0 2017-11-25 05:41 ./usr/bin/ -rwxr-xr-x root/root 211 2017-11-25 05:41 ./usr/bin/dipy_mask -rwxr-xr-x root/root 226 2017-11-25 05:41 ./usr/bin/dipy_median_otsu -rwxr-xr-x root/root 220 2017-11-25 05:41 ./usr/bin/dipy_nlmeans -rwxr-xr-x root/root 226 2017-11-25 05:41 ./usr/bin/dipy_reconst_csa -rwxr-xr-x 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+------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 653004 Build-Time: 1324 Distribution: bionic-proposed Host Architecture: amd64 Install-Time: 46 Job: dipy_0.13.0-2.dsc Machine Architecture: amd64 Package: dipy Package-Time: 1377 Source-Version: 0.13.0-2 Space: 653004 Status: successful Version: 0.13.0-2 -------------------------------------------------------------------------------- Finished at 20171206-0741 Build needed 00:22:57, 653004k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13822471 Scanning for processes to kill in build PACKAGEBUILD-13822471 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13822471 Stopping target for build PACKAGEBUILD-13822471 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-13822471 Removing build PACKAGEBUILD-13822471