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dindel package

dindel 1.01+dfsg-4build1 source package in Ubuntu

Changelog

dindel (1.01+dfsg-4build1) zesty; urgency=high

  * No change rebuild against boost1.62.

 -- Dimitri John Ledkov <email address hidden>  Tue, 01 Nov 2016 16:16:12 +0000

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Uploaded by:
Dimitri John Ledkov
Uploaded to:
Zesty
Original maintainer:
Ubuntu Developers
Architectures:
any
Section:
misc
Urgency:
Very Urgent

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Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
dindel_1.01+dfsg.orig.tar.xz 73.9 KiB 28e83cc4007216f604cdccc3e56d57e897a3782c818bf60756c44ee327627a66
dindel_1.01+dfsg-4build1.debian.tar.xz 7.1 KiB 1742c8067f2de622aacb16eeda69f7e0d7739777b2c3a0a7590dc130da3d4ded
dindel_1.01+dfsg-4build1.dsc 1.8 KiB 22f593a1e9cca4cf47ba20065689822b06772a75f50e334b2e09c46238bfafd8

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Binary packages built by this source

dindel: determines indel calls from short-read data

 Dindel is a program for calling small indels from short-read sequence
 data ('next generation sequence data'). It currently is designed to
 handle only Illumina data.
 .
 Dindel requires a BAM file containing the read-alignments as input. It
 then extracts candidate indels from the BAM file, and realigns the reads
 to candidate haplotypes consisting of these candidate indels. If there
 is sufficient evidence for an alternative haplotype to the reference,
 it will call an indel.
 .
 It is possible to test indels discovered with other methods using Dindel,
 for instance longer indels obtained through assembly methods. Dindel
 will then realign both mapped and unmapped reads to see if the candidate
 indel is supported by the reads.
 .
 Dindel outputs both genotype likelihoods and includes a script to
 convert these to a VCF file with indel and SNP calls.
 .
 There is basic support for outputting realigned BAM files for each
 realignment-window. These realigned BAM files can be used to call SNPs
 near (candidate) indels.

dindel-dbgsym: No summary available for dindel-dbgsym in ubuntu zesty.

No description available for dindel-dbgsym in ubuntu zesty.