Ubuntu
dialign-t package

dialign-t 1.0.2-3 source package in Ubuntu

Changelog

dialign-t (1.0.2-3) unstable; urgency=low


  [ Charles Plessy ]
  * debian/upstream: renamed from upstream-metadata.yaml

  [ Andreas Tille]
  * debian/upstream:
     - Removed duplicate of DOI
     - Moved PMID to References
  * debian/control:
     - cme fix dpkg-control
     - removed Conflicts/Provides/Replaces: dialign-t,dialign-t-doc
       since this is not even in oldstable any more
     - canonical Vcs URLs
     - debhelper 9
  * debian/patches/prevent_enforcing_arch.patch: Do not enforce specific
    architecture
  * debian/patches/hardening.patch: Propagate hardening options
  * debian/copyright: DEP5

 -- Andreas Tille <email address hidden>  Wed, 13 Nov 2013 14:12:59 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
science
Urgency:
Low Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
dialign-t_1.0.2-3.dsc 1.4 KiB b27651c7d61ad90c050c09a0d157831a2e63e52fa349cdbf948f0f1210362129
dialign-t_1.0.2.orig.tar.gz 1.7 MiB fb3940a48a12875332752a298f619f0da62593189cd257d28932463c7cebcb8f
dialign-t_1.0.2-3.debian.tar.gz 8.0 KiB c01ab69d3de818205b9f154d5270544691e631a0a11620221c531668c61414e1

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Binary packages built by this source

dialign-tx: Segment-based multiple sequence alignment

 DIALIGN-TX is a command line tool to perform multiple alignment of protein or
 DNA sequences. It is a complete reimplementation of the segment-base approach
 including several new improvements and heuristics that significantly enhance
 the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T.
 For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that
 favours chains of low-scoring local alignments over isolated high-scoring
 fragments. For multiple alignment, DIALIGN-TX uses an improved greedy
 procedure that is less sensitive to spurious local sequence similarities.

dialign-tx-data: Segment-based multiple sequence alignment (data files)

 DIALIGN-TX is a command line tool to perform multiple alignment of protein or
 DNA sequences. It is a complete reimplementation of the segment-base approach
 including several new improvements and heuristics that significantly enhance
 the quality of the output alignments compared to DIALIGN 2.2 and DIALIGN-T.
 For pairwise alignment, DIALIGN-TX uses a fragment-chaining algorithm that
 favours chains of low-scoring local alignments over isolated high-scoring
 fragments. For multiple alignment, DIALIGN-TX uses an improved greedy
 procedure that is less sensitive to spurious local sequence similarities.
 .
 This package contain the score matrices and probability distribution files
 that DIALIGN-TX needs to align peptidic and nucleic sequences.