debian-science 1.14.4 source package in Ubuntu
Changelog
debian-science (1.14.4) unstable; urgency=medium [ Alastair McKinstry ] * Update meteorology, meteorology-dev with new ECMWF packages [ Andreas Tille ] * Standards-Version: 4.6.2 * Check all tasks for missing, renamed and removed packages * start of automatic changelog entry * * Changes in metapackage dependencies -science-biology added: Recommends: nrn-mod2c, nmodl Suggests: siconos-mechanics-tools, siconos, libinterviews-dev, python3-nmodl removed: Recommends: avida-base -science-chemistry added: Recommends: python3-mpiplus, feff85exafs Suggests: libmaeparser-dev, libcoordgen-dev, refmac-dictionary, python3-amp -science-dataacquisition added: Recommends: open3d-tools, open3d-gui removed: Recommends: ktimetrace, narval-utils Suggests: comedi-source, rtai -science-dataacquisition-dev added: Recommends: libopen3d-dev, mseed2sac, python3-datacache, python3-tango, python3-open3d Suggests: libbcm2835-dev, python3-asciitree removed: Recommends: libnarval1-dev -science-datamanagement added: Recommends: python3-jdata, python3-nxs, nexus-tools, hdf5-filter-plugin-blosc-serial, hdf5-filter-plugin, python3-pyzoltan, plfit, virtuoso-opensource, hdf5-filter-plugin-zfp-serial Suggests: python3-openpyxl, libnexus-dev, python3-opentsne, libnexus-java, libplfit-dev, python3-plfit -science-distributedcomputing added: Recommends: nordugrid-arc-client removed: Recommends: nordugrid-arc-nox -science-electrophysiology added: Suggests: python3-bioxtasraw -science-engineering added: Recommends: persalys, python3-persalys removed: Recommends: ecs -science-engineering-dev added: Recommends: libbasix-dev, libtet1.5-dev, libdolfinx-dev, python3-dolfinx, python3-ffcx, python3-basix removed: Recommends: libtet1.4-dev -science-geography added: Recommends: python3-spaghetti removed: Recommends: gpsdrive, drawmap, openjump -science-geometry added: Recommends: python3-gengeo Suggests: python3-opengv, libopengv-dev -science-highenergy-physics added: Recommends: dials, sdpb removed: Recommends: libroot-proof-clarens5.34, root-plugin-proof-peac -science-highenergy-physics-dev added: Recommends: python3-mpiplus, libmctc-lib-dev, libkim-api-dev, python3-pymbar, libncrystal-dev, libhepmc3-dev, libmmdb2-dev, python3-dials Suggests: refmac-dictionary removed: Recommends: libroot-proof-clarens-dev -science-imageanalysis added: Recommends: libcvd-tools -science-imageanalysis-dev added: Recommends: libcvd-dev -science-linguistics added: Recommends: opennlp, fasttext, sentencepiece, apertium-eval-translator Suggests: libmbt-dev, python3-fasttext, apertium-pol-szl, python3-sentencepiece, libapache-opennlp-java, libtimblserver-dev, libopennlp-maxent-java, python3-gensim, libfasttext-dev, tfdocgen, libticcutils-dev, libtimbl-dev, libsentencepiece-dev, libucto-dev removed: Suggests: libmbt0-dev, libtimbl3-dev, libtimblserver2-dev, libtimbl4-dev, libucto1-dev -science-machine-learning added: Recommends: mrgingham, python3-torch, python3-torch-sparse, python3-fann2 Suggests: python3-mrgingham, libdlpack-dev, python3-imblearn, libfannj-java, libmrgingham-dev, python3-liac-arff removed: Recommends: libcomplearn-dev, libqsearch-dev Suggests: libacovea-dev -science-mathematics added: Recommends: sagemath-database-cremona-elliptic-curves, persalys, python3-persalys, coinor-libbonmin-dev removed: Recommends: kseg, pari-extra, proofgeneral-coq, scilab-scimax -science-mathematics-dev added: Recommends: python3-pyemd, python3-dmsh, python3-mpi4py-fft, libmagma-dev, python3-meshplex, libsuperlu-dist-dev, libbasix-dev, libspfft-dev, libdolfinx-dev, python3-ortools, python3-dolfinx, python3-ffcx, libortools-dev, libmeschach-dev, python3-cython-blis, python3-meshzoo, python3-pyfftw, libopenmesh-dev, libmeshsdfilter-dev, python3-amgcl, libsleef-dev, python3-morfessor, python3-basix, libflame-dev, python3-swiglpk, libamgcl-dev Suggests: libtet1.5-dev, python3-threadpoolctl, libbdd-dev removed: Recommends: libtet1.4-dev Suggests: libtet1.4.2-dev, libtrilinos-dev -science-meteorology added: Recommends: cylc-flow, libmetkit-utils, libaec-tools, python3-magics++, libatlas-ecmwf-utils, libfckit-utils, odc, fpzip-utils, mbdyn, libeckit-utils removed: Recommends: fcm, vistrails, makedepf90, sasview, ecaccess, gwyddion, cylc -science-meteorology-dev added: Recommends: fcm, python3-pyswarms, libspfft-dev, libeckit-dev, python3-pyfftw, python3-esda, libmbc-dev, ecbuild, libfckit-dev, libmetkit-dev, mpi-defaults, libatlas-ecmwf-dev, makedepf90, libfpzip-dev, libodc-dev Suggests: python3-threadpoolctl removed: Recommends: mpi-defaults-dev -science-nanoscale-physics added: Recommends: cif-linguist, nexus-tools, finalcif, openkim-models removed: Recommends: extrema -science-nanoscale-physics-dev added: Recommends: libmctc-lib-dev, libcoordgen-dev, libspfft-dev, python3-sasdata, libkim-api-dev, python3-qutip, libnexus-dev, python3-nxs, python3-pyfftw, libncrystal-dev, libhepmc3-dev, libmmdb2-dev, libnexus-java, libcctbx-dev, libmaeparser-dev, python3-cif2cell, python3-cctbx Suggests: python3-threadpoolctl -science-neuroscience-cognitive added: Recommends: python3-pyxnat Suggests: python3-bioxtasraw removed: Recommends: openwalnut-qt4 -science-numericalcomputation added: Recommends: python3-pyswarms, python3-rioxarray, libtoontag-dev, libtoon-dev, python3-ppl, sdpb, libsleef-dev Suggests: python3-lazyarray, python3-threadpoolctl, python3-spyder-kernels, liblbfgspp-dev, python3-libpysal, libcubature-dev, libcppnumericalsolvers-dev, libmagma-dev removed: Recommends: scilab-scimax, scilab-swt Suggests: libscirenderer-java, scilab-metanet, scilab-jims -science-physics added: Recommends: siconos, siconos-mechanics-tools -science-physics-dev added: Recommends: python3-meshplex, libfclib-dev, libbasix-dev, libspfft-dev, python3-meshzoo, libdolfinx-dev, python3-pyfftw, python3-dmsh, python3-dolfinx, python3-ffcx, python3-basix Suggests: libopm-simulators-dev, libopm-common-dev, python3-opm-simulators, libopm-upscaling-dev, libopm-grid-dev, python3-opm-common, libopm-material-dev, libopm-models-dev -science-robotics added: Recommends: pcl-ros-tools, ros-camera-calibration, catkin-tools, collada-urdf-tools, mrgingham, catkin-lint, jskeus Suggests: arduino-ctags removed: Recommends: rtai -science-robotics-dev added: Recommends: python3-meshplex, python3-osrf-pycommon, python3-meshzoo, libpcl-ros-dev, liburdf-dev, jskeus-dev, python3-dmsh, libelas-dev, libignition-common3-core-dev, vcstool Suggests: libmrgingham-dev, python3-mrgingham -science-simulations added: Recommends: tkgate, libopm-grid-bin, python3-qutip, siconos-mechanics-tools, libopm-upscaling-bin, siconos, libopm-simulators-bin, mbpoll, libopm-common-bin Suggests: python3-pyswarms, libopm-simulators-dev, python3-opm-simulators, libopm-upscaling-dev, libopm-common-dev, libopm-grid-dev, python3-opm-common, libopm-material-dev, libopm-models-dev removed: Recommends: radiance -science-statistics added: Recommends: persalys, python3-persalys Suggests: python3-leidenalg, python3-pynndescent, libicb-utils-java -science-tools added: Recommends: mrcal, python3-hdf5plugin Suggests: tiemu-skinedit, spacenavd, libmrcal-dev, python3-mrcal, python3-opcodes -science-typesetting added: Recommends: texmaker, auctex, texmacs, kile, lyx, setzer, texstudio, vim-latexsuite Suggests: libreoffice-dmaths removed: Recommends: texmaker | kile | lyx | texmacs | auctex | vim-latexsuite | texstudio Suggests: openoffice.org-dmaths -science-viewing added: Recommends: open3d-tools, open3d-gui, camv-rnd removed: Suggests: worldwind -science-viewing-dev added: Recommends: python3-symfit, python3-open3d, libopen3d-dev Suggests: python3-opentsne -science-workflow added: Recommends: capsule-nextflow -- Andreas Tille <email address hidden> Thu, 02 Mar 2023 20:47:09 +0100
Upload details
- Uploaded by:
- Debian Science Team
- Uploaded to:
- Sid
- Original maintainer:
- Debian Science Team
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Lunar | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
debian-science_1.14.4.dsc | 5.2 KiB | 6d534ec99bfa074c942919571547a6772c777032a83ac329a08739435cd70a0d |
debian-science_1.14.4.tar.xz | 103.5 KiB | 2afee48312f1368c08596a5dd169b54e2b8c7788c82fb0317df5f16e6068d519 |
Available diffs
No changes file available.
Binary packages built by this source
- science-all: Default selection of tasks for Debian Science
This package is part of the Debian Science Pure Blend and installs all
tasks for a default installation of this blend.
- science-biology: Debian Science Biology packages
This metapackage will install Debian Science packages related to
Biology. You might also be interested in the field::biology debtag.
.
This metapackage makes use of the packages med-bio and med-bio-dev
(for development of biological applications) which are maintained
by Debian Med - another Debian Pure Blend. If you are a biologist
you are most probably interested in the Debian Med project which
deals with biology and medicine in much more detail then the more
general Debian Science.
- science-chemistry: Debian Science Chemistry packages
This metapackage will install Debian Science packages related to
Chemistry. You might also be interested in the field::chemistry
debtag and, depending on your focus, in the education-chemistry
metapackage.
- science-config: Debian Science Project config package
This package provides the basic infrastructure of all science-* packages and is
needed by them.
.
These are the science related metapackages in the Debian Science project:
.
* science-biology packages related to biology
* science-chemistry packages related to chemistry
* science-dataacquisition packages related to data acquisition
* science-dataacquisition -dev packages related to data acquisition
development
* science-distributedcomp uting distributed computing packages
* science-economics packages related to economics
* science-electrophysiolo gy packages related to electrophysiology
* science-electronics packages related to electronics
* science-engineering packages related to engineering
* science-engineering- dev packages related to development of
engineering applications
* science-financial packages related to financial engineering
* science-geography packages related to geography
* science-geometry packages related to geometry
* science-highenergy- physics packages related to high energy physics
* science-highenergy- physics- dev packages related to development of
high energy physics applications
* science-linguistics packages related to linguistics
* science-machine- learning packages related to machine learning
* science-mathematics packages related to mathematics
* science-mathematics- dev packages related to development of
mathematical applications
* science-meteorology packages related to meteorology and climate
* science-meteorology- dev packages related to the development of
meteorology and climate applications
* science-nanoscale- physics packages related to nanoscale physics
* science-nanoscale- physics- dev packages useful for developing nanoscale
physics applications
* science-neuroscience- cognitive packages related to cognitive
neuroscience
* science-neuroscience- datasets packages for Neuroscience Datasets
* science-neuroscience- modeling packages for modeling of neural
systems
* science-physics packages related to physics
* science-physics-dev packages related to development of physical
applications
* science-psychophysics packages related to packages for psychophysics
* science-robotics packages related to robotics
* science-robotics- dev packages related to development of robotics
applications
* science-simulation packages to do simulations
* science-social packages related to social sciences
.
This are metapackages for common utilities for all sciences:
.
* science-imageanalysis packages related to image analysis
* science-imageanalysis- dev packages related to image analysis
development
* science-numericalcomput ation packages related to numerical
computation
* science-presentation packages related to presentation
* science-statistics packages related to statistics
* science-tools packages containing misc tools useful in science
* science-typesetting packages related to typesetting
* science-viewing packages related to viewing
* science-viewing-dev packages related to development of viewing
applications
.
Note: All these packages are so called metapackages. This means they are not
executable programs, but only links to other packages. This way you will
conveniently get most of scientific free software which is available in
Debian.
- science-dataacquisition: Debian Science data acquisition packages
This metapackage will install Debian Science packages related to data
acquisition. This might be used in several sciences (as for instance
science-viewing and science-typesetting) .
- science-dataacquisition-dev: Debian Science data acquisition development packages
This metapackage will install Debian Science packages which are helpful
to develop applications related to data acquisition. This might be
used in several sciences.
- science-datamanagement: Debian Science Data Management packages
This metapackage will install packages to assist with data management
tasks, such as obtaining data from remote resources, keeping data
under version control, etc.
- science-distributedcomputing: Debian Science Distributed Computing packages
This metapackage will install Debian Science packages useful for
various types of distributed computing, such as grid-, cloud-, cluster-
and parallel-computing.
- science-economics: Debian Science Economics packages
This metapackage will install Debian Science packages useful for economics and
econometrics. It includes user-friendly programs for simulating and estimating
macro-economic and micro-economic models. It also provides computing
environments which can solve a wide range of problems typically encountered in
economic research. These environments provide functionalities similar to those
of popular non-free systems (such as MATLAB, Mathematica, Stata or SAS).
- science-electronics: Debian Science Electronics transitional package
Debian-Electronics is now a separate Debian Pure Blend and allows a
fine-grained control on the topics to install. To ease the transition,
this package will install all user related tasks from Debian-Electronics.
- science-electrophysiology: Debian Science packages for Electrophysiology
This metapackage will install Debian packages which might be useful for
scientists doing electrophysiology-based neuroscience research.
.
The selection of packages is targeting the application of analysis
techniques. Methods developers are referred to the
science-statistics, science- imageanalysis, science- numericalcomput ation,
med-imaging, and med-imaging-dev metapackages for a variety of additional
software that might be useful for electrophysiology research.
- science-engineering: Debian Science Engineering packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages related to Engineering.
.
Please note that there is an additional package engineering-dev
which depends from packages which are useful to develop engineering
related software.
- science-engineering-dev: Debian Science Engineering-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Engineering.
.
You might also be interested in the science-engineering metapackage.
- science-financial: Debian Science financial engineering and computational finance
This metapackage will install Debian Science packages for financial
engineering and computational finance.
- science-geography: Debian Science Geography packages
This metapackage will install Debian Science packages related to
Geography. You might also be interested in the field::geography
debtag and, depending on your focus, in the education-geography
metapackage.
- science-geometry: Debian Science geometry packages
This metapackage will install Debian Science packages related to
geometry. You might also be interested in the field::mathematics
debtag and, depending on your focus, in the education-mathematics
metapackage.
- science-highenergy-physics: Debian Science High Energy Physics packages
This metapackage will install Debian Science packages related to High Energy
Physics, which is a branch of physics that studies the elementary subatomic
constituents of matter and radiation, and their interactions. The field is
also called Particle Physics.
.
You might also be interested in the debtag field::physics and, depending on
your focus, in the physics and education-physics metapackages.
- science-highenergy-physics-dev: Debian Science High Energy Physics development packages
This metapackage will install Debian Science packages related to development
of High Energy Physics applications, which is a branch of physics that studies
the elementary subatomic constituents of matter and radiation, and their
interactions. The field is also called Particle Physics.
.
You might also be interested in the debtag field::physics and, depending on
your focus, in the physics and education-physics metapackages.
- science-imageanalysis: Debian Science image analysis packages
This metapackage will install Debian Science packages related to
scientific image acquisition. This might be used in several
sciences (as for instance science-dataacquisition , science-viewing
and science-typesetting) .
- science-imageanalysis-dev: Debian Science development of image analysis applications
This metapackage will install Debian Science development libraries to
develop scientific image analysis applications acquisitions.
- science-linguistics: Debian Science Linguistics packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages related to Linguistics.
- science-logic: Debian Science Logic packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages related to Computational Logic. It contains
formula transformation tools, solvers for formulas specified in
various logics, interactive proof systems, etc.
- science-machine-learning: Debian Science Machine Learning packages
This metapackage will install packages useful for machine learning.
Included packages range from knowledge-based (expert) inference
systems to software implementing the advanced statistical methods
that currently dominate the field.
- science-mathematics: Debian Science Mathematics packages
This metapackage will install Debian Science packages related to
Mathematics. You might also be interested in the field::mathematics
debtag and, depending on your focus, in the education-mathematics
metapackage.
- science-mathematics-dev: Debian Science Mathematics-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Mathematics.
.
You might also be interested in the science-mathematics metapackage.
- science-meteorology: Debian Science Meteorology packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages related to Meteorology and Climate.
- science-meteorology-dev: Debian Science Meteorology-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Meteorology and Climate.
.
You might also be interested in the science-meteorology metapackage.
- science-nanoscale-physics: Debian Science Nanoscale Physics packages
This metapackage will install Debian Science packages related to
Nanoscale Physics, which corresponds to the study of physical systems
typically ranging from 1 to 100 nm in size. The properties of such
systems usually depend on the number of atoms they are made of, while
this number is still relatively large for an accurate description.
.
The nanoscale is the meeting point of classical and quantum physics.
Previous research efforts were considering either smaller systems, for
which everybody could develop their own methods and software
independently, or much bigger systems, for which it was clearly
impossible to provide a fine-grained description. Addressing the issues
raised by the nanoscale requires however cooperative and coordinated
efforts in a multidisciplinary context. This metapackage is part of
such an endeavor.
.
You might also be interested in the debtag field::physics and, depending on
your focus, in the physics and education-physics metapackages.
- science-nanoscale-physics-dev: Debian Science Nanoscale Physics development packages
This metapackage will install Debian Science packages which might be
helpful for the development of applications for Nanoscale Physics.
.
You might also be interested in the debtag field::physics and, depending
on your focus, in the nanoscale-physics, physics and education-physics
metapackages.
- science-neuroscience-cognitive: Debian Science packages for Cognitive Neuroscience
This metapackage will install Debian packages which might be useful for
scientists doing cognitive neuroscience research. This comprises the full
research process from conducting psychophysical experiments, over data
acquisition and analysis, to visualization and typesetting of scientific
results.
.
The selection of packages is targeting the application of analysis
techniques. Methods developers are referred to the science-statistics,
science-imageanalysis, science- numericalcomput ation, med-imaging, and
med-imaging-dev metapackages for a variety of additional software that
might be useful in the context of cognitive neuroscience.
- science-neuroscience-modeling: Debian Science packages for modeling of neural systems
This metapackage will install Debian packages which might be useful for
scientists interested in modeling of real neural systems at different
levels (from single neuron to complex networks).
.
The selection of packages is targeting the application of simulation
techniques. Methods developers are referred to the
science-statistics, science- imageanalysis,
science-numericalcomput ation, med-imaging, and med-imaging-dev
metapackages for a variety of additional software that might be
useful for neuroscience research.
- science-numericalcomputation: Debian Science Numerical Computation packages
This metapackage will install Debian Science packages useful for
numerical computation. The packages provide an array oriented
calculation and visualisation system for scientific computing and
data analysis. These packages are similar to commercial systems such
as Matlab and IDL.
- science-physics: Debian Science Physics packages
This metapackage will install Debian Science packages related to Physics.
You might also be interested in the debtag field::physics and, depending on
your focus, in education-physics metapackage.
- science-physics-dev: Debian Science Physics-dev packages
This metapackage will install Debian Science packages which might be
helpful for development of applications for Mathematics.
.
You might also be interested in the science-physics metapackage.
- science-presentation: Debian Science generic tools for presentations
This metapackage will install Debian Science some packages which are
useful for doing presentations for instance on scientific conferences.
- science-psychophysics: Debian Science packages for Psychophysics
This metapackage will install Debian packages which might be useful for
carrying out any experiment relating physical stimuli and their
psychological effects.
.
The selection of packages is targeting software for stimuli delivery.
For additional software related to the analysis of the acquired data
refer to science-neuroscience- cognitive, med-imaging depending on the
domain of application. Additionally look into
science-bci since those often provide a complete loop
frameworks including stimuli delivery.
- science-robotics: Debian Robotics packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages related to Robotics.
.
You might also be interested in the science-engineering metapackage.
- science-robotics-dev: Debian Robotics development packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages that are relevant to develop applications
for robotics.
- science-simulations: Debian Science Simulation packages
This metapackage will install Debian Science packages that are
used to do simulations in different fields of science.
- science-statistics: Debian Science Statistics packages
This metapackage is part of the Debian Pure Blend "Debian Science"
and installs packages related to statistics. This task is a general
task which might be useful for any scientific work. It depends from
a lot of R packages as well as from other tools which are useful to
do statistics. Moreover the Science Mathematics task is suggested
to optionally install all mathematics related software.
- science-tasks: Debian Science tasks for tasksel
This package is part of the Debian Pure Blend "Debian Science" and provides
additional tasks for tasksel. If this package will be installed all tasks
which are provided by Debian Science will be added to the tasksel menu.
- science-typesetting: Debian Science typesetting packages
This metapackage will install Debian Science packages related to
typesetting. You might also be interested in the use::typesetting
debtag.
- science-viewing: Debian Science data visualisation packages
This metapackage will install Debian Science packages related to data
visualization. You might also be interested in the use::viewing
debtag.
- science-viewing-dev: Debian Science development of visualisation applications
This metapackage will install Debian Science packages related to the
development of applications to visualise scientific data.
- science-workflow: workflow management systems useful for scientific research
This task lists some packages providing workflow management
systems useful for scientific research.