debian-med 3.3 source package in Ubuntu
Changelog
debian-med (3.3) unstable; urgency=medium
* Re-render tasks with Buster release state
* start of automatic changelog entry *
* Changes in metapackage dependencies
-med-bio
added:
Recommends: pilercr, mosdepth, quast, r-cran-webgestaltr, ragout,
kraken2, gffread, filtlong, umis, sailfish, sibelia,
atropos, braker, virulencefinder, vcfanno, biobambam2,
python3-pybel, kmerresistance, optitype, spaln, kma,
stringtie, oncofuse, optimir, kallisto, sina, dendroscope,
multiqc, python3-geneimpacts, bismark
Suggests: r-cran-forecast
removed:
Recommends: pybel
Suggests: melting-gui
-med-bio-dev
added:
Recommends: libbio-samtools-perl, libbio-asn1-entrezgene-perl,
libnexml-java, libbio-tools-run-alignment-clustalw-perl,
libbigwig-dev, libbio-tools-phylo-paml-perl,
libbio-chado-schema-perl, python3-cgecore, libbio-scf-perl,
python3-mirtop, libbio-tools-run-alignment-tcoffee-perl,
python3-pybel
Ignore: golang-github-biogo-hts-dev
-med-bio-ngs
added:
Recommends: kraken2, stringtie
-med-cms
added:
Recommends: xnat
removed:
Suggests: xnat
-med-imaging
added:
Recommends: xnat
removed:
Suggests: xnat
-med-imaging-dev
added:
Recommends: libvtk7-dev
Suggests: libvtk6-dev
removed:
Recommends: libvtk6-dev
-med-psychology
added:
Recommends: r-cran-psychometric, r-cran-psych, r-cran-psyphy,
r-cran-psychotree
removed:
Recommends: psychotree, psychometric, miscpsycho, psyphy, psych
-- Andreas Tille <email address hidden> Fri, 25 Jan 2019 14:49:50 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| debian-med_3.3.dsc | 2.8 KiB | 06538cd54ffd86791ef79d9e53c0c24f8c7800099b40732a3e19e4e74f228ff7 |
| debian-med_3.3.tar.xz | 100.9 KiB | 8deaa63f5fda7a3f4f2d2dc51e44896ed0f371848de96e8dcb07c514ea3f341e |
Available diffs
- diff from 3.2 to 3.3 (16.0 KiB)
No changes file available.
Binary packages built by this source
- med-all: No summary available for med-all in ubuntu eoan.
No description available for med-all in ubuntu eoan.
- med-bio: No summary available for med-bio in ubuntu eoan.
No description available for med-bio in ubuntu eoan.
- med-bio-dev: No summary available for med-bio-dev in ubuntu eoan.
No description available for med-bio-dev in ubuntu eoan.
- med-cloud: No summary available for med-cloud in ubuntu eoan.
No description available for med-cloud in ubuntu eoan.
- med-config: Debian Med general config package
This package provides the basic infrastructure of all metapackages assembled
by the Debian Med team.
.
This metapackage provides common features shared between the different
metapackages of the project. Moreover it introduces a method to handle a
'med' system users group using debconf.
.
The Debian Med Project include metapackages for different tasks, which are:
* applications for microbiological research and support for development of
biological applications
* cloud computing in microbiological research
* drug databases
* dental surgery practice
* epidemiology and medical statistics
* image processing and support for imaging application development
* pharmacological research
* radiation oncology, diagnostic imaging and related fields
* medical practice
* psychological research and practice
* rehabilitation
* typesetting and publishing
* miscellaneous tools
.
Each task is represented by a metapackage. Metapackages do not contain
executable programs, but rather dependencies from other packages. This way
you will conveniently get all free medical software which is available for
Debian by simply installing the relevant metapackage
- med-data: Debian Med drug databases
This metapackage will install free drug databases and related
applications. The database can be accessed by any EMR using
the application.
- med-dental: No summary available for med-dental in ubuntu eoan.
No description available for med-dental in ubuntu eoan.
- med-epi: No summary available for med-epi in ubuntu eoan.
No description available for med-epi in ubuntu eoan.
- med-his: No summary available for med-his in ubuntu eoan.
No description available for med-his in ubuntu eoan.
- med-imaging: Debian Med image processing and visualization packages
This metapackage will install Debian packages which might be useful in
medical image processing and visualization.
.
On one hand, it installs several packages supporting various image file
formats and image management, like DICOM (Digital Imaging and
Communications in Medicine) which is the de-facto standard for medical
image management, and NIFTI. On the other hand, it provides a variety of
software packages that can be used for visualization and for image processing
- either from a graphical user interface, the command line, or implemented in
workflows.
- med-imaging-dev: No summary available for med-imaging-dev in ubuntu eoan.
No description available for med-imaging-dev in ubuntu eoan.
- med-laboratory: Debian Med suggestions for medical laboratories
This metapackage contains dependencies for software and that could
be useful ro run a medical laboratory.
- med-oncology: Debian Med packages for oncology
This metapackage will install tools that are useful for radiation
oncology.
- med-pharmacy: No summary available for med-pharmacy in ubuntu eoan.
No description available for med-pharmacy in ubuntu eoan.
- med-physics: No summary available for med-physics in ubuntu eoan.
No description available for med-physics in ubuntu eoan.
- med-practice: No summary available for med-practice in ubuntu eoan.
No description available for med-practice in ubuntu eoan.
- med-psychology: No summary available for med-psychology in ubuntu eoan.
No description available for med-psychology in ubuntu eoan.
- med-research: No summary available for med-research in ubuntu eoan.
No description available for med-research in ubuntu eoan.
- med-statistics: No summary available for med-statistics in ubuntu eoan.
No description available for med-statistics in ubuntu eoan.
- med-tasks: No summary available for med-tasks in ubuntu eoan.
No description available for med-tasks in ubuntu eoan.
- med-tools: No summary available for med-tools in ubuntu eoan.
No description available for med-tools in ubuntu eoan.
- med-typesetting: No summary available for med-typesetting in ubuntu eoan.
No description available for med-typesetting in ubuntu eoan.
