debian-med 3.2 source package in Ubuntu

Changelog

debian-med (3.2) unstable; urgency=medium

  * Fix broken reference to alioth
  * Standards-Version: 4.3.0
  * debhelper 12
  * Versioned Build-Depends: blends-dev (>= 0.7.2~)
  * Add missing ${misc:Depends}

  * start of automatic changelog entry * 
  
  * Changes in metapackage dependencies
   -med-bio
    added:
      Recommends:  r-cran-sdmtools, delly, python3-pybedtools, r-cran-tcr,
                   qutemol, r-cran-tigger, bax2bam, python3-gffutils,
                   vdjtools, r-cran-shazam, r-cran-alakazam, gramalign,
                   igor, deepbinner, python3-sqt, minimap2, sourmash,
                   samblaster, murasaki | murasaki-mpi, biosyntax, paipline,
                   pyvcf, r-bioc-cner, igdiscover, fastp, ncbi-igblast,
                   pybel, jellyfish1, minimac4, lambda-align2, sweed,
                   viewmol, seq-seq-pan, yaha, python3-biomaj3-daemon,
                   changeo, mirtop, python3-presto, cct, unanimity,
                   plasmidseeker
    removed:
      Recommends:  hilbertvisgui, decipher, hyphygui, jstreeview,
                   biosyntax-gedit, python3-biomaj3, spice, rosetta,
                   hexamer, murasaki, gbioseq, finex, das-proserver, est-db
   -med-bio-dev
    added:
      Recommends:  python3-screed, python3-misopy, python3-pyvcf,
                   python3-biomaj3, python3-ngs, toil, python3-cutadapt,
                   python3-ruffus, python3-biotools, python3-sqt,
                   libmems-dev, python3-hyphy, libstatgen-dev, python3-cobra,
                   python3-biopython, python3-pysam, python3-airr,
                   python3-dendropy, libgenome-dev, python3-fast5,
                   python3-cyvcf2, libpll-dev, python3-bx, libmuscle-dev,
                   python3-treetime, python3-presto, python3-pbconsensuscore,
                   python3-csb, python3-intervaltree-bio, python3-seqcluster,
                   python3-ete3, python3-bcbio, python3-pyfaidx, galaxy-lib,
                   python3-consensuscore2, snakemake
      Suggests:    ctdconverter, libmodhmm-dev, libsvmloc-dev, vdjtools,
                   python3-ctdopts, python3-biopython-sql, libmilib-java
    removed:
      Recommends:  python3-biotools | python-biotools, octave-bioinfo,
                   python3-pyvcf | python-pyvcf,
                   python3-biomaj3 | python-biomaj3,
                   python3-pbconsensuscore | python-pbconsensuscore,
                   libmuscle-3.7-dev, python3-pyfaidx | python-pyfaidx,
                   python3-consensuscore2 | python-consensuscore2,
                   python-bd2k, python3-bx | python-bx,
                   python3-ete3 | python-ete3, python3-ruffus | python-ruffus,
                   python3-fast5 | python-fast5,
                   python3-dendropy | python-dendropy, python-pysam,
                   python3-cutadapt | python-cutadapt, libgff-perl,
                   python3-ngs | python-ngs, python3-pyfasta | python-pyfasta,
                   python3-csb | python-csb, libgenome-1.3-dev,
                   python3-biopython | python-biopython,
                   python3-hyphy | python-hyphy, python-cobra,
                   libmems-1.6-dev,
                   python3-intervaltree-bio | python-intervaltree-bio,
                   python3-misopy | python-misopy
      Suggests:    python3-biopython-sql | python-biopython-sql
   -med-bio-ngs
    added:
      Recommends:  python3-presto, changeo, bcbio, igor, python3-pybedtools,
                   igdiscover, python3-airr, r-cran-tcr, r-cran-tigger,
                   python3-sqt, python3-gffutils, fastp, vdjtools,
                   samblaster, r-cran-shazam, r-cran-alakazam
   -med-bio-phylogeny
    added:
      Suggests:    python3-treetime
   -med-epi
    added:
      Recommends:  epifire
   -med-imaging
    added:
      Recommends:  mrtrix3, odil
      Suggests:    orthanc-mysql, tifffile
   -med-imaging-dev
    added:
      Recommends:  libsimpleitk1-dev, python3-biosig, libodil-dev,
                   python3-simpleitk, libxdf-dev
    removed:
      Recommends:  libodil0-dev
   -med-pharmacy
    added:
      Recommends:  r-cran-rpact
   -med-physics
    added:
      Suggests:    python3-biosig
    removed:
      Suggests:    python-biosig
   -med-research
    added:
      Recommends:  r-cran-rpact
   -med-typesetting
    removed:
      Suggests:    referencer

 -- Andreas Tille <email address hidden>  Thu, 24 Jan 2019 15:07:55 +0100