https://launchpad.net/ubuntu/+source/crac/2.5.2+dfsg-2/+build/17324699 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-005 4.4.0-157-generic #185-Ubuntu SMP Tue Jul 23 09:16:08 UTC 2019 ppc64le Buildd toolchain package versions: launchpad-buildd_176 python-lpbuildd_176 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 27 Jul 05:15:14 ntpdate[1879]: adjust time server 10.211.37.1 offset 0.000064 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-17324699 --image-type chroot /home/buildd/filecache-default/8ecade3ba39252410f2285d8b2f76e6336361d85 Creating target for build PACKAGEBUILD-17324699 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-17324699 Starting target for build PACKAGEBUILD-17324699 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-17324699 'deb http://ftpmaster.internal/ubuntu eoan main universe' 'deb http://ftpmaster.internal/ubuntu eoan-security main universe' 'deb http://ftpmaster.internal/ubuntu eoan-updates main universe' 'deb http://ftpmaster.internal/ubuntu eoan-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-17324699 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-17324699 Updating target for build PACKAGEBUILD-17324699 Get:1 http://ftpmaster.internal/ubuntu eoan InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu eoan-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu eoan-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu eoan-proposed InRelease [107 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main ppc64el Packages [929 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main Translation-en [502 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/universe ppc64el Packages [8778 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/universe Translation-en [5296 kB] Get:9 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el Packages [52.6 kB] Get:10 http://ftpmaster.internal/ubuntu eoan-proposed/main Translation-en [36.8 kB] Get:11 http://ftpmaster.internal/ubuntu eoan-proposed/universe ppc64el Packages [255 kB] Get:12 http://ftpmaster.internal/ubuntu eoan-proposed/universe Translation-en [219 kB] Fetched 16.6 MB in 4s (4676 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-8 libapt-pkg5.0 libidn11 libisl19 libjson-c3 libreadline7 libstdc++-8-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-9 g++-9 gcc-9 gcc-9-base libapt-pkg5.90 libgcc-9-dev libisl21 libjson-c4 libpcre2-8-0 libreadline8 libstdc++-9-dev The following packages will be upgraded: adduser advancecomp apt base-files base-passwd bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils build-essential bzip2 ca-certificates coreutils cpp cpp-8 dash debconf debianutils diffutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++ g++-8 gcc gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libacl1 libapparmor1 libargon2-1 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdebconfclient0 libdevmapper1.02.1 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev libgcc1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libidn11 libidn2-0 libitm1 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 liblzma5 libmount1 libmpfr6 libncurses6 libncursesw6 libnettle6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.28 libpng16-16 libprocps7 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-8-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login lsb-base mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base perl-modules-5.28 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv sysvinit-utils tar tzdata util-linux xz-utils zlib1g 149 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 116 MB of archives. After this operation, 129 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu eoan/main ppc64el libc6-dev ppc64el 2.29-0ubuntu3 [2565 kB] Get:2 http://ftpmaster.internal/ubuntu eoan/main ppc64el libc-dev-bin ppc64el 2.29-0ubuntu3 [72.6 kB] Get:3 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el linux-libc-dev ppc64el 5.2.0-9.10 [1057 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main ppc64el libc6 ppc64el 2.29-0ubuntu3 [2707 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main ppc64el libc-bin ppc64el 2.29-0ubuntu3 [627 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main ppc64el gcc-9-base ppc64el 9.1.0-9ubuntu2 [17.7 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgcc1 ppc64el 1:9.1.0-9ubuntu2 [29.6 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/main ppc64el base-files ppc64el 10.2ubuntu4 [60.7 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main ppc64el debianutils ppc64el 4.8.6.3 [86.3 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/main ppc64el bash ppc64el 5.0-4ubuntu1 [723 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main ppc64el bsdutils ppc64el 1:2.33.1-0.1ubuntu2 [69.4 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/main ppc64el coreutils ppc64el 8.30-3ubuntu1 [1313 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/main ppc64el lsb-base all 10.2019051400ubuntu1 [12.4 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main ppc64el tar ppc64el 1.30+dfsg-6 [288 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/main ppc64el dpkg ppc64el 1.19.7ubuntu1 [1158 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main ppc64el libperl5.28 ppc64el 5.28.1-6 [3837 kB] Get:17 http://ftpmaster.internal/ubuntu eoan/main ppc64el perl ppc64el 5.28.1-6 [204 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main ppc64el perl-base ppc64el 5.28.1-6 [1514 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main ppc64el perl-modules-5.28 all 5.28.1-6 [2818 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main ppc64el bzip2 ppc64el 1.0.6-9.2 [36.8 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main ppc64el libbz2-1.0 ppc64el 1.0.6-9.2 [43.3 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg1-0.6ubuntu1 [716 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgdbm6 ppc64el 1.18.1-4 [31.6 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgdbm-compat4 ppc64el 1.18.1-4 [6660 B] Get:25 http://ftpmaster.internal/ubuntu eoan/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-1ubuntu2 [57.9 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main ppc64el debconf all 1.5.72 [122 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main ppc64el dash ppc64el 0.5.10.2-6 [99.9 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main ppc64el diffutils ppc64el 1:3.7-3 [227 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main ppc64el findutils ppc64el 4.6.0+git+20190209-2ubuntu1 [362 kB] Get:30 http://ftpmaster.internal/ubuntu eoan/main ppc64el grep ppc64el 3.3-1 [157 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main ppc64el gzip ppc64el 1.10-0ubuntu1 [108 kB] Get:32 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsmartcols1 ppc64el 2.33.1-0.1ubuntu2 [108 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main ppc64el libuuid1 ppc64el 2.33.1-0.1ubuntu2 [22.7 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main ppc64el libblkid1 ppc64el 2.33.1-0.1ubuntu2 [159 kB] Get:35 http://ftpmaster.internal/ubuntu eoan/main ppc64el libfdisk1 ppc64el 2.33.1-0.1ubuntu2 [196 kB] Get:36 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpcre2-8-0 ppc64el 10.32-5 [183 kB] Get:37 http://ftpmaster.internal/ubuntu eoan/main ppc64el libselinux1 ppc64el 2.9-2 [82.3 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main ppc64el libmount1 ppc64el 2.33.1-0.1ubuntu2 [173 kB] Get:39 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libncurses6 ppc64el 6.1+20190713-1ubuntu2 [120 kB] Get:40 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libtinfo6 ppc64el 6.1+20190713-1ubuntu2 [101 kB] Get:41 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libncursesw6 ppc64el 6.1+20190713-1ubuntu2 [152 kB] Get:42 http://ftpmaster.internal/ubuntu eoan/main ppc64el fdisk ppc64el 2.33.1-0.1ubuntu2 [130 kB] Get:43 http://ftpmaster.internal/ubuntu eoan/main ppc64el login ppc64el 1:4.5-1.1ubuntu2 [269 kB] Get:44 http://ftpmaster.internal/ubuntu eoan/main ppc64el util-linux ppc64el 2.33.1-0.1ubuntu2 [1054 kB] Get:45 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el ncurses-bin ppc64el 6.1+20190713-1ubuntu2 [175 kB] Get:46 http://ftpmaster.internal/ubuntu eoan/main ppc64el sed ppc64el 4.7-1 [203 kB] Get:47 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdebconfclient0 ppc64el 0.249ubuntu1 [6428 B] Get:48 http://ftpmaster.internal/ubuntu eoan/main ppc64el base-passwd ppc64el 3.5.46 [51.0 kB] Get:49 http://ftpmaster.internal/ubuntu eoan/main ppc64el init-system-helpers all 1.57 [38.3 kB] Get:50 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el ncurses-base all 6.1+20190713-1ubuntu2 [18.1 kB] Get:51 http://ftpmaster.internal/ubuntu eoan/main ppc64el sysvinit-utils ppc64el 2.95-2ubuntu1 [22.4 kB] Get:52 http://ftpmaster.internal/ubuntu eoan/main ppc64el liblz4-1 ppc64el 1.9.1-1 [74.8 kB] Get:53 http://ftpmaster.internal/ubuntu eoan/main ppc64el liblzma5 ppc64el 5.2.4-1 [110 kB] Get:54 http://ftpmaster.internal/ubuntu eoan/main ppc64el libstdc++6 ppc64el 9.1.0-9ubuntu2 [542 kB] Get:55 http://ftpmaster.internal/ubuntu eoan/main ppc64el libnettle6 ppc64el 3.4.1-1 [145 kB] Get:56 http://ftpmaster.internal/ubuntu eoan/main ppc64el libhogweed4 ppc64el 3.4.1-1 [145 kB] Get:57 http://ftpmaster.internal/ubuntu eoan/main ppc64el libunistring2 ppc64el 0.9.10-2 [386 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/main ppc64el libidn2-0 ppc64el 2.2.0-1 [53.4 kB] Get:59 http://ftpmaster.internal/ubuntu eoan/main ppc64el libp11-kit0 ppc64el 0.23.15-2 [198 kB] Get:60 http://ftpmaster.internal/ubuntu eoan/main ppc64el libtasn1-6 ppc64el 4.13-4 [43.3 kB] Get:61 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgnutls30 ppc64el 3.6.8-2 [767 kB] Get:62 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el systemd-sysv ppc64el 242-2ubuntu1 [9360 B] Get:63 http://ftpmaster.internal/ubuntu eoan/main ppc64el libacl1 ppc64el 2.2.53-4 [20.8 kB] Get:64 http://ftpmaster.internal/ubuntu eoan/main ppc64el libapparmor1 ppc64el 2.13.2-9ubuntu7 [38.5 kB] Get:65 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libaudit-common all 1:2.8.5-1ubuntu1 [4260 B] Get:66 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcap-ng0 ppc64el 0.7.9-2 [12.4 kB] Get:67 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libaudit1 ppc64el 1:2.8.5-1ubuntu1 [42.9 kB] Get:68 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcap2 ppc64el 1:2.25-2 [14.9 kB] Get:69 http://ftpmaster.internal/ubuntu eoan/main ppc64el libjson-c4 ppc64el 0.13.1+dfsg-2 [32.8 kB] Get:70 http://ftpmaster.internal/ubuntu eoan/main ppc64el libargon2-1 ppc64el 0~20171227-0.2 [21.9 kB] Get:71 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libudev1 ppc64el 242-2ubuntu1 [90.6 kB] Get:72 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.155-2ubuntu5 [153 kB] Get:73 http://ftpmaster.internal/ubuntu eoan/main ppc64el libssl1.1 ppc64el 1.1.1c-1ubuntu3 [1369 kB] Get:74 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcryptsetup12 ppc64el 2:2.1.0-5ubuntu2 [182 kB] Get:75 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgpg-error0 ppc64el 1.36-7 [69.0 kB] Get:76 http://ftpmaster.internal/ubuntu eoan/main ppc64el libkmod2 ppc64el 26-1ubuntu1 [51.8 kB] Get:77 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpam0g ppc64el 1.3.1-5ubuntu1 [62.7 kB] Get:78 http://ftpmaster.internal/ubuntu eoan/main ppc64el libseccomp2 ppc64el 2.4.1-0ubuntu0.19.10.3 [48.6 kB] Get:79 http://ftpmaster.internal/ubuntu eoan/main ppc64el mount ppc64el 2.33.1-0.1ubuntu2 [122 kB] Get:80 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsepol1 ppc64el 2.9-2 [286 kB] Get:81 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsemanage-common all 2.9-3 [9760 B] Get:82 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsemanage1 ppc64el 2.9-3 [95.2 kB] Get:83 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpam-modules-bin ppc64el 1.3.1-5ubuntu1 [43.6 kB] Get:84 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpam-modules ppc64el 1.3.1-5ubuntu1 [287 kB] Get:85 http://ftpmaster.internal/ubuntu eoan/main ppc64el passwd ppc64el 1:4.5-1.1ubuntu2 [828 kB] Get:86 http://ftpmaster.internal/ubuntu eoan/main ppc64el adduser all 3.118ubuntu1 [163 kB] Get:87 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el systemd ppc64el 242-2ubuntu1 [4151 kB] Get:88 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libsystemd0 ppc64el 242-2ubuntu1 [303 kB] Get:89 http://ftpmaster.internal/ubuntu eoan/main ppc64el libzstd1 ppc64el 1.3.8+dfsg-3 [291 kB] Get:90 http://ftpmaster.internal/ubuntu eoan/main ppc64el libapt-pkg5.90 ppc64el 1.9.1 [897 kB] Get:91 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgcrypt20 ppc64el 1.8.4-5ubuntu1 [449 kB] Get:92 http://ftpmaster.internal/ubuntu eoan/main ppc64el gpgv ppc64el 2.2.12-1ubuntu3 [237 kB] Get:93 http://ftpmaster.internal/ubuntu eoan/main ppc64el apt ppc64el 1.9.1 [1313 kB] Get:94 http://ftpmaster.internal/ubuntu eoan/main ppc64el libext2fs2 ppc64el 1.45.2-1ubuntu1 [215 kB] Get:95 http://ftpmaster.internal/ubuntu eoan/main ppc64el e2fsprogs ppc64el 1.45.2-1ubuntu1 [580 kB] Get:96 http://ftpmaster.internal/ubuntu eoan/main ppc64el init ppc64el 1.57 [6088 B] Get:97 http://ftpmaster.internal/ubuntu eoan/main ppc64el libattr1 ppc64el 1:2.4.48-4 [13.7 kB] Get:98 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpam-runtime all 1.3.1-5ubuntu1 [37.3 kB] Get:99 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpcre3 ppc64el 2:8.39-12 [239 kB] Get:100 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcom-err2 ppc64el 1.45.2-1ubuntu1 [10.5 kB] Get:101 http://ftpmaster.internal/ubuntu eoan/main ppc64el libprocps7 ppc64el 2:3.3.15-2ubuntu2 [37.0 kB] Get:102 http://ftpmaster.internal/ubuntu eoan/main ppc64el libss2 ppc64el 1.45.2-1ubuntu1 [12.5 kB] Get:103 http://ftpmaster.internal/ubuntu eoan/main ppc64el procps ppc64el 2:3.3.15-2ubuntu2 [253 kB] Get:104 http://ftpmaster.internal/ubuntu eoan/main ppc64el openssl ppc64el 1.1.1c-1ubuntu3 [626 kB] Get:105 http://ftpmaster.internal/ubuntu eoan/main ppc64el ca-certificates all 20190110 [146 kB] Get:106 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el dmsetup ppc64el 2:1.02.155-2ubuntu5 [82.4 kB] Get:107 http://ftpmaster.internal/ubuntu eoan/main ppc64el libidn11 ppc64el 1.33-2.2ubuntu2 [48.8 kB] Get:108 http://ftpmaster.internal/ubuntu eoan/main ppc64el readline-common all 8.0-2 [53.4 kB] Get:109 http://ftpmaster.internal/ubuntu eoan/main ppc64el libreadline8 ppc64el 8.0-2 [143 kB] Get:110 http://ftpmaster.internal/ubuntu eoan/main ppc64el libslang2 ppc64el 2.3.2-4 [415 kB] Get:111 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libsqlite3-0 ppc64el 3.29.0-1 [564 kB] Get:112 http://ftpmaster.internal/ubuntu eoan/main ppc64el tzdata all 2019b-1 [187 kB] Get:113 http://ftpmaster.internal/ubuntu eoan/main ppc64el xz-utils ppc64el 5.2.4-1 [87.9 kB] Get:114 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpng16-16 ppc64el 1.6.37-1 [208 kB] Get:115 http://ftpmaster.internal/ubuntu eoan/main ppc64el multiarch-support ppc64el 2.29-0ubuntu3 [6928 B] Get:116 http://ftpmaster.internal/ubuntu eoan/main ppc64el advancecomp ppc64el 2.1-2.1 [248 kB] Get:117 http://ftpmaster.internal/ubuntu eoan/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.32.51.20190702-1ubuntu1 [2095 kB] Get:118 http://ftpmaster.internal/ubuntu eoan/main ppc64el libbinutils ppc64el 2.32.51.20190702-1ubuntu1 [519 kB] Get:119 http://ftpmaster.internal/ubuntu eoan/main ppc64el binutils ppc64el 2.32.51.20190702-1ubuntu1 [3388 B] Get:120 http://ftpmaster.internal/ubuntu eoan/main ppc64el binutils-common ppc64el 2.32.51.20190702-1ubuntu1 [202 kB] Get:121 http://ftpmaster.internal/ubuntu eoan/main ppc64el libisl21 ppc64el 0.21-1 [683 kB] Get:122 http://ftpmaster.internal/ubuntu eoan/main ppc64el libmpfr6 ppc64el 4.0.2-1 [263 kB] Get:123 http://ftpmaster.internal/ubuntu eoan/main ppc64el cpp-9 ppc64el 9.1.0-9ubuntu2 [9781 kB] Get:124 http://ftpmaster.internal/ubuntu eoan/main ppc64el g++ ppc64el 4:9.1.0-1ubuntu4 [1596 B] Get:125 http://ftpmaster.internal/ubuntu eoan/main ppc64el gcc ppc64el 4:9.1.0-1ubuntu4 [5224 B] Get:126 http://ftpmaster.internal/ubuntu eoan/main ppc64el cpp ppc64el 4:9.1.0-1ubuntu4 [27.6 kB] Get:127 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcc1-0 ppc64el 9.1.0-9ubuntu2 [52.8 kB] Get:128 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgomp1 ppc64el 9.1.0-9ubuntu2 [92.4 kB] Get:129 http://ftpmaster.internal/ubuntu eoan/main ppc64el libitm1 ppc64el 9.1.0-9ubuntu2 [29.4 kB] Get:130 http://ftpmaster.internal/ubuntu eoan/main ppc64el libatomic1 ppc64el 9.1.0-9ubuntu2 [9928 B] Get:131 http://ftpmaster.internal/ubuntu eoan/main ppc64el libasan5 ppc64el 9.1.0-9ubuntu2 [408 kB] Get:132 http://ftpmaster.internal/ubuntu eoan/main ppc64el liblsan0 ppc64el 9.1.0-9ubuntu2 [148 kB] Get:133 http://ftpmaster.internal/ubuntu eoan/main ppc64el libtsan0 ppc64el 9.1.0-9ubuntu2 [305 kB] Get:134 http://ftpmaster.internal/ubuntu eoan/main ppc64el libubsan1 ppc64el 9.1.0-9ubuntu2 [140 kB] Get:135 http://ftpmaster.internal/ubuntu eoan/main ppc64el libquadmath0 ppc64el 9.1.0-9ubuntu2 [149 kB] Get:136 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgcc-9-dev ppc64el 9.1.0-9ubuntu2 [1261 kB] Get:137 http://ftpmaster.internal/ubuntu eoan/main ppc64el gcc-9 ppc64el 9.1.0-9ubuntu2 [10.4 MB] Get:138 http://ftpmaster.internal/ubuntu eoan/main ppc64el libstdc++-9-dev ppc64el 9.1.0-9ubuntu2 [1720 kB] Get:139 http://ftpmaster.internal/ubuntu 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http://ftpmaster.internal/ubuntu eoan/universe ppc64el gcc-8-base ppc64el 8.3.0-19ubuntu1 [18.5 kB] Get:150 http://ftpmaster.internal/ubuntu eoan/main ppc64el e2fslibs ppc64el 1.45.2-1ubuntu1 [2716 B] Get:151 http://ftpmaster.internal/ubuntu eoan/main ppc64el libassuan0 ppc64el 2.5.3-7ubuntu1 [38.3 kB] Get:152 http://ftpmaster.internal/ubuntu eoan/main ppc64el pinentry-curses ppc64el 1.1.0-2 [40.7 kB] Get:153 http://ftpmaster.internal/ubuntu eoan/main ppc64el gpg ppc64el 2.2.12-1ubuntu3 [540 kB] Get:154 http://ftpmaster.internal/ubuntu eoan/main ppc64el gpgconf ppc64el 2.2.12-1ubuntu3 [147 kB] Get:155 http://ftpmaster.internal/ubuntu eoan/main ppc64el gpg-agent ppc64el 2.2.12-1ubuntu3 [268 kB] Get:156 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcomerr2 ppc64el 1.45.2-1ubuntu1 [2708 B] Get:157 http://ftpmaster.internal/ubuntu eoan/main ppc64el liblockfile-bin ppc64el 1.15-1 [12.7 kB] Get:158 http://ftpmaster.internal/ubuntu eoan/main ppc64el liblockfile1 ppc64el 1.15-1 [7260 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Setting up libprocps7:ppc64el (2:3.3.15-2ubuntu2) ... Setting up libsqlite3-0:ppc64el (3.29.0-1) ... Setting up binutils-common:ppc64el (2.32.51.20190702-1ubuntu1) ... Setting up linux-libc-dev:ppc64el (5.2.0-9.10) ... Setting up libcom-err2:ppc64el (1.45.2-1ubuntu1) ... Setting up libassuan0:ppc64el (2.5.3-7ubuntu1) ... Setting up libgomp1:ppc64el (9.1.0-9ubuntu2) ... Setting up bzip2 (1.0.6-9.2) ... Setting up tzdata (2019b-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jul 27 05:15:49 UTC 2019. Universal Time is now: Sat Jul 27 05:15:49 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasan5:ppc64el (9.1.0-9ubuntu2) ... Setting up libslang2:ppc64el (2.3.2-4) ... Setting up multiarch-support (2.29-0ubuntu3) ... Setting up libmpfr6:ppc64el (4.0.2-1) ... Setting up libidn11:ppc64el (1.33-2.2ubuntu2) ... Setting up libncurses6:ppc64el (6.1+20190713-1ubuntu2) ... Setting up xz-utils (5.2.4-1) ... Setting up libquadmath0:ppc64el (9.1.0-9ubuntu2) ... Setting up libpng16-16:ppc64el (1.6.37-1) ... Setting up libatomic1:ppc64el (9.1.0-9ubuntu2) ... Setting up patch (2.7.6-5) ... Setting up libss2:ppc64el (1.45.2-1ubuntu1) ... Setting up gcc-8-base:ppc64el (8.3.0-19ubuntu1) ... Setting up libubsan1:ppc64el (9.1.0-9ubuntu2) ... Setting up advancecomp (2.1-2.1) ... Setting up dmsetup (2:1.02.155-2ubuntu5) ... Setting up libcomerr2:ppc64el (1.45.2-1ubuntu1) ... Setting up procps (2:3.3.15-2ubuntu2) ... Installing new version of config file /etc/sysctl.d/10-network-security.conf ... Setting up cpp-9 (9.1.0-9ubuntu2) ... Setting up liblockfile1:ppc64el (1.15-1) ... Setting up libbinutils:ppc64el (2.32.51.20190702-1ubuntu1) ... Setting up cpp-8 (8.3.0-19ubuntu1) ... Setting up libc-dev-bin (2.29-0ubuntu3) ... Setting up openssl (1.1.1c-1ubuntu3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.0-2) ... Setting up libcc1-0:ppc64el (9.1.0-9ubuntu2) ... Setting up liblsan0:ppc64el (9.1.0-9ubuntu2) ... Setting up libitm1:ppc64el (9.1.0-9ubuntu2) ... Setting up libgdbm6:ppc64el (1.18.1-4) ... Setting up libtsan0:ppc64el (9.1.0-9ubuntu2) ... Setting up pinentry-curses (1.1.0-2) ... Setting up libreadline8:ppc64el (8.0-2) ... Setting up e2fsprogs (1.45.2-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Created symlink /etc/systemd/system/timers.target.wants/e2scrub_all.timer -> /lib/systemd/system/e2scrub_all.timer. Created symlink /etc/systemd/system/default.target.wants/e2scrub_reap.service -> /lib/systemd/system/e2scrub_reap.service. Setting up libgcc-9-dev:ppc64el (9.1.0-9ubuntu2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 2 added, 7 removed; done. Setting up optipng (0.7.7-1) ... Setting up libgdbm-compat4:ppc64el (1.18.1-4) ... Setting up libgcc-8-dev:ppc64el (8.3.0-19ubuntu1) ... Setting up libperl5.28:ppc64el (5.28.1-6) ... Setting up cpp (4:9.1.0-1ubuntu4) ... Setting up gpgconf (2.2.12-1ubuntu3) ... Setting up libc6-dev:ppc64el (2.29-0ubuntu3) ... Setting up binutils-powerpc64le-linux-gnu (2.32.51.20190702-1ubuntu1) ... Setting up gpg (2.2.12-1ubuntu3) ... Setting up libstdc++-8-dev:ppc64el (8.3.0-19ubuntu1) ... Setting up gpg-agent (2.2.12-1ubuntu3) ... Setting up libstdc++-9-dev:ppc64el (9.1.0-9ubuntu2) ... Setting up pkgbinarymangler (144) ... Setting up binutils (2.32.51.20190702-1ubuntu1) ... Setting up perl (5.28.1-6) ... Setting up libdpkg-perl (1.19.7ubuntu1) ... Setting up gcc-9 (9.1.0-9ubuntu2) ... Setting up gcc-8 (8.3.0-19ubuntu1) ... Setting up gcc (4:9.1.0-1ubuntu4) ... Setting up dpkg-dev (1.19.7ubuntu1) ... Setting up g++-9 (9.1.0-9ubuntu2) ... Setting up g++ (4:9.1.0-1ubuntu4) ... Setting up g++-8 (8.3.0-19ubuntu1) ... Setting up build-essential (12.6ubuntu2) ... Processing triggers for systemd (242-2ubuntu1) ... Processing triggers for libc-bin (2.29-0ubuntu3) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-17324699 ppc64el eoan-proposed -c chroot:build-PACKAGEBUILD-17324699 --arch=ppc64el --dist=eoan-proposed --nolog crac_2.5.2+dfsg-2.dsc Initiating build PACKAGEBUILD-17324699 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-157-generic #185-Ubuntu SMP Tue Jul 23 09:16:08 UTC 2019 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-ppc64el-005.buildd +==============================================================================+ | crac 2.5.2+dfsg-2 (ppc64el) 27 Jul 2019 05:15 | +==============================================================================+ Package: crac Version: 2.5.2+dfsg-2 Source Version: 2.5.2+dfsg-2 Distribution: eoan-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/crac-G3hWO9/crac-2.5.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/crac-G3hWO9' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-17324699/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- crac_2.5.2+dfsg-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-JABitb/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-JABitb/apt_archive ./ InRelease Get:2 copy:/<>/resolver-JABitb/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-JABitb/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-JABitb/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-JABitb/apt_archive ./ Packages [530 B] Fetched 2863 B in 0s (188 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libapt-pkg5.0 libidn11 libisl19 libjson-c3 libreadline7 libstdc++-8-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-JABitb/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13843 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), zlib1g-dev, libhts-dev, libjellyfish-2.0-dev, libgzstream-dev, libgkarrays-dev, pkg-config, rsync Filtered Build-Depends: debhelper-compat (= 12), zlib1g-dev, libhts-dev, libjellyfish-2.0-dev, libgzstream-dev, libgkarrays-dev, pkg-config, rsync dpkg-deb: building package 'sbuild-build-depends-crac-dummy' in '/<>/resolver-_ZnToQ/apt_archive/sbuild-build-depends-crac-dummy.deb'. Ign:1 copy:/<>/resolver-_ZnToQ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-_ZnToQ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-_ZnToQ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-_ZnToQ/apt_archive ./ Sources [264 B] Get:5 copy:/<>/resolver-_ZnToQ/apt_archive ./ Packages [584 B] Fetched 2967 B in 0s (236 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install crac build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-8 libapt-pkg5.0 libidn11 libisl19 libjson-c3 libreadline7 libstdc++-8-dev Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libbsd0 libcroco3 libcurl3-gnutls libdeflate0 libelf1 libfile-stripnondeterminism-perl libgkarrays-dev libgkarrays1 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libgzstream-dev libgzstream0 libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts2 libhx509-5-heimdal libicu63 libjellyfish-2.0-2 libjellyfish-2.0-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpopt0 libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db pkg-config po-debconf rsync zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc krb5-user liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl openssh-client openssh-server Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libbsd0 libcroco3 libcurl3-gnutls libdeflate0 libelf1 libfile-stripnondeterminism-perl libgkarrays-dev libgkarrays1 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libgzstream-dev libgzstream0 libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts-dev libhts2 libhx509-5-heimdal libicu63 libjellyfish-2.0-2 libjellyfish-2.0-dev libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libldap-common liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpopt0 libpsl5 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db pkg-config po-debconf rsync sbuild-build-depends-crac-dummy zlib1g-dev 0 upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 25.9 MB of archives. After this operation, 94.3 MB of additional disk space will be used. Get:1 copy:/<>/resolver-_ZnToQ/apt_archive ./ sbuild-build-depends-crac-dummy 0.invalid.0 [916 B] Get:2 http://ftpmaster.internal/ubuntu eoan/main ppc64el libbsd0 ppc64el 0.9.1-2 [54.8 kB] Get:3 http://ftpmaster.internal/ubuntu eoan/main ppc64el bsdmainutils ppc64el 11.1.2ubuntu2 [185 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main ppc64el libuchardet0 ppc64el 0.0.6-3 [67.7 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main ppc64el groff-base ppc64el 1.22.4-3 [936 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpipeline1 ppc64el 1.5.1-2 [27.7 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main ppc64el man-db ppc64el 2.8.5-2 [1140 kB] Get:8 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libmagic-mgc ppc64el 1:5.37-4 [210 kB] Get:9 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libmagic1 ppc64el 1:5.37-4 [91.9 kB] Get:10 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el file ppc64el 1:5.37-4 [25.0 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main ppc64el libelf1 ppc64el 0.176-1.1 [51.6 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/main ppc64el libglib2.0-0 ppc64el 2.61.1-2 [1361 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/main ppc64el libicu63 ppc64el 63.2-2 [8505 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpopt0 ppc64el 1.16-12 [30.7 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-7ubuntu3 [666 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main ppc64el gettext-base ppc64el 0.19.8.1-9 [52.8 kB] Get:17 http://ftpmaster.internal/ubuntu eoan/main ppc64el libkrb5support0 ppc64el 1.17-5 [35.4 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main ppc64el libk5crypto3 ppc64el 1.17-5 [102 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main ppc64el libkeyutils1 ppc64el 1.6-6 [11.3 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main ppc64el libkrb5-3 ppc64el 1.17-5 [371 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgssapi-krb5-2 ppc64el 1.17-5 [135 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpsl5 ppc64el 0.20.2-2 [52.2 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main ppc64el rsync ppc64el 3.1.3-6 [375 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsigsegv2 ppc64el 2.12-2 [13.9 kB] Get:25 http://ftpmaster.internal/ubuntu eoan/main ppc64el m4 ppc64el 1.4.18-2 [203 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/main ppc64el autoconf all 2.69-11 [322 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main ppc64el autotools-dev all 20180224.1 [39.6 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main ppc64el automake all 1:1.16.1-4ubuntu3 [522 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main ppc64el autopoint all 0.19.8.1-9 [412 kB] Get:30 http://ftpmaster.internal/ubuntu eoan/main ppc64el libtool all 2.4.6-10 [194 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main ppc64el dh-autoreconf all 19 [16.1 kB] Get:32 http://ftpmaster.internal/ubuntu eoan/main ppc64el libarchive-zip-perl all 1.64-1 [84.9 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsub-override-perl all 0.09-2 [9532 B] Get:34 http://ftpmaster.internal/ubuntu eoan/main ppc64el libfile-stripnondeterminism-perl all 1.3.0-1 [14.5 kB] Get:35 http://ftpmaster.internal/ubuntu eoan/main ppc64el dh-strip-nondeterminism all 1.3.0-1 [5200 B] Get:36 http://ftpmaster.internal/ubuntu eoan/main ppc64el dwz ppc64el 0.12.20190723-1 [86.8 kB] Get:37 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcroco3 ppc64el 0.6.12-3 [92.5 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main ppc64el gettext ppc64el 0.19.8.1-9 [978 kB] Get:39 http://ftpmaster.internal/ubuntu eoan/main ppc64el intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:40 http://ftpmaster.internal/ubuntu eoan/main ppc64el po-debconf all 1.0.21 [233 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main ppc64el debhelper all 12.2.3ubuntu1 [907 kB] Get:42 http://ftpmaster.internal/ubuntu eoan/main ppc64el libroken18-heimdal ppc64el 7.5.0+dfsg-3 [47.0 kB] Get:43 http://ftpmaster.internal/ubuntu eoan/main ppc64el libasn1-8-heimdal ppc64el 7.5.0+dfsg-3 [176 kB] Get:44 http://ftpmaster.internal/ubuntu eoan/main ppc64el libheimbase1-heimdal ppc64el 7.5.0+dfsg-3 [33.9 kB] Get:45 http://ftpmaster.internal/ubuntu eoan/main ppc64el libhcrypto4-heimdal ppc64el 7.5.0+dfsg-3 [107 kB] Get:46 http://ftpmaster.internal/ubuntu eoan/main ppc64el libwind0-heimdal ppc64el 7.5.0+dfsg-3 [48.7 kB] Get:47 http://ftpmaster.internal/ubuntu eoan/main ppc64el libhx509-5-heimdal ppc64el 7.5.0+dfsg-3 [121 kB] Get:48 http://ftpmaster.internal/ubuntu eoan/main ppc64el libkrb5-26-heimdal ppc64el 7.5.0+dfsg-3 [237 kB] Get:49 http://ftpmaster.internal/ubuntu eoan/main ppc64el libheimntlm0-heimdal ppc64el 7.5.0+dfsg-3 [17.0 kB] Get:50 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgssapi3-heimdal ppc64el 7.5.0+dfsg-3 [106 kB] Get:51 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsasl2-modules-db ppc64el 2.1.27+dfsg-1 [17.0 kB] Get:52 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsasl2-2 ppc64el 2.1.27+dfsg-1 [62.0 kB] Get:53 http://ftpmaster.internal/ubuntu eoan/main ppc64el libldap-common all 2.4.47+dfsg-3ubuntu2 [16.6 kB] Get:54 http://ftpmaster.internal/ubuntu eoan/main ppc64el libldap-2.4-2 ppc64el 2.4.47+dfsg-3ubuntu2 [179 kB] Get:55 http://ftpmaster.internal/ubuntu eoan/main ppc64el libnghttp2-14 ppc64el 1.37.0-1 [92.9 kB] Get:56 http://ftpmaster.internal/ubuntu eoan/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2 [54.5 kB] Get:57 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libssh-4 ppc64el 0.9.0-1 [229 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcurl3-gnutls ppc64el 7.65.1-1ubuntu1 [253 kB] Get:59 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libdeflate0 ppc64el 1.2-1 [61.6 kB] Get:60 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libgkarrays1 ppc64el 2.1.0+dfsg-2 [53.4 kB] Get:61 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libgkarrays-dev ppc64el 2.1.0+dfsg-2 [83.8 kB] Get:62 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libgzstream0 ppc64el 1.5+dfsg-4 [7004 B] Get:63 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libgzstream-dev ppc64el 1.5+dfsg-4 [6812 B] Get:64 http://ftpmaster.internal/ubuntu eoan-proposed/universe ppc64el libhts2 ppc64el 1.9-11 [342 kB] Get:65 http://ftpmaster.internal/ubuntu eoan/main ppc64el liblzma-dev ppc64el 5.2.4-1 [166 kB] Get:66 http://ftpmaster.internal/ubuntu eoan/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-1ubuntu2 [176 kB] Get:67 http://ftpmaster.internal/ubuntu eoan-proposed/universe ppc64el libhts-dev ppc64el 1.9-11 [4327 kB] Get:68 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libjellyfish-2.0-2 ppc64el 2.2.10-2 [70.3 kB] Get:69 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libjellyfish-2.0-dev ppc64el 2.2.10-2 [143 kB] Get:70 http://ftpmaster.internal/ubuntu eoan/main ppc64el pkg-config ppc64el 0.29.1-0ubuntu3 [49.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.9 MB in 6s (4583 kB/s) Selecting previously unselected package libbsd0:ppc64el. (Reading database ... 13843 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_ppc64el.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../02-libuchardet0_0.0.6-3_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_ppc64el.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../04-libpipeline1_1.5.1-2_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_ppc64el.deb ... Unpacking man-db (2.8.5-2) ... 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Unpacking libkrb5-26-heimdal:ppc64el (7.5.0+dfsg-3) ... Selecting previously unselected package libheimntlm0-heimdal:ppc64el. Preparing to unpack .../47-libheimntlm0-heimdal_7.5.0+dfsg-3_ppc64el.deb ... Unpacking libheimntlm0-heimdal:ppc64el (7.5.0+dfsg-3) ... Selecting previously unselected package libgssapi3-heimdal:ppc64el. Preparing to unpack .../48-libgssapi3-heimdal_7.5.0+dfsg-3_ppc64el.deb ... Unpacking libgssapi3-heimdal:ppc64el (7.5.0+dfsg-3) ... Selecting previously unselected package libsasl2-modules-db:ppc64el. Preparing to unpack .../49-libsasl2-modules-db_2.1.27+dfsg-1_ppc64el.deb ... Unpacking libsasl2-modules-db:ppc64el (2.1.27+dfsg-1) ... Selecting previously unselected package libsasl2-2:ppc64el. Preparing to unpack .../50-libsasl2-2_2.1.27+dfsg-1_ppc64el.deb ... Unpacking libsasl2-2:ppc64el (2.1.27+dfsg-1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../51-libldap-common_2.4.47+dfsg-3ubuntu2_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3ubuntu2) ... Selecting previously unselected package libldap-2.4-2:ppc64el. Preparing to unpack .../52-libldap-2.4-2_2.4.47+dfsg-3ubuntu2_ppc64el.deb ... Unpacking libldap-2.4-2:ppc64el (2.4.47+dfsg-3ubuntu2) ... Selecting previously unselected package libnghttp2-14:ppc64el. Preparing to unpack .../53-libnghttp2-14_1.37.0-1_ppc64el.deb ... Unpacking libnghttp2-14:ppc64el (1.37.0-1) ... Selecting previously unselected package librtmp1:ppc64el. Preparing to unpack .../54-librtmp1_2.4+20151223.gitfa8646d.1-2_ppc64el.deb ... Unpacking librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh-4:ppc64el. Preparing to unpack .../55-libssh-4_0.9.0-1_ppc64el.deb ... Unpacking libssh-4:ppc64el (0.9.0-1) ... Selecting previously unselected package libcurl3-gnutls:ppc64el. Preparing to unpack .../56-libcurl3-gnutls_7.65.1-1ubuntu1_ppc64el.deb ... Unpacking libcurl3-gnutls:ppc64el (7.65.1-1ubuntu1) ... Selecting previously unselected package libdeflate0:ppc64el. Preparing to unpack .../57-libdeflate0_1.2-1_ppc64el.deb ... Unpacking libdeflate0:ppc64el (1.2-1) ... Selecting previously unselected package libgkarrays1. Preparing to unpack .../58-libgkarrays1_2.1.0+dfsg-2_ppc64el.deb ... Unpacking libgkarrays1 (2.1.0+dfsg-2) ... Selecting previously unselected package libgkarrays-dev. Preparing to unpack .../59-libgkarrays-dev_2.1.0+dfsg-2_ppc64el.deb ... Unpacking libgkarrays-dev (2.1.0+dfsg-2) ... Selecting previously unselected package libgzstream0. Preparing to unpack .../60-libgzstream0_1.5+dfsg-4_ppc64el.deb ... Unpacking libgzstream0 (1.5+dfsg-4) ... Selecting previously unselected package libgzstream-dev. Preparing to unpack .../61-libgzstream-dev_1.5+dfsg-4_ppc64el.deb ... Unpacking libgzstream-dev (1.5+dfsg-4) ... Selecting previously unselected package libhts2:ppc64el. Preparing to unpack .../62-libhts2_1.9-11_ppc64el.deb ... Unpacking libhts2:ppc64el (1.9-11) ... Selecting previously unselected package liblzma-dev:ppc64el. Preparing to unpack .../63-liblzma-dev_5.2.4-1_ppc64el.deb ... Unpacking liblzma-dev:ppc64el (5.2.4-1) ... Selecting previously unselected package zlib1g-dev:ppc64el. Preparing to unpack .../64-zlib1g-dev_1%3a1.2.11.dfsg-1ubuntu2_ppc64el.deb ... Unpacking zlib1g-dev:ppc64el (1:1.2.11.dfsg-1ubuntu2) ... Selecting previously unselected package libhts-dev:ppc64el. Preparing to unpack .../65-libhts-dev_1.9-11_ppc64el.deb ... Unpacking libhts-dev:ppc64el (1.9-11) ... Selecting previously unselected package libjellyfish-2.0-2:ppc64el. Preparing to unpack .../66-libjellyfish-2.0-2_2.2.10-2_ppc64el.deb ... Unpacking libjellyfish-2.0-2:ppc64el (2.2.10-2) ... Selecting previously unselected package libjellyfish-2.0-dev:ppc64el. Preparing to unpack .../67-libjellyfish-2.0-dev_2.2.10-2_ppc64el.deb ... Unpacking libjellyfish-2.0-dev:ppc64el (2.2.10-2) ... Selecting previously unselected package pkg-config. Preparing to unpack .../68-pkg-config_0.29.1-0ubuntu3_ppc64el.deb ... Unpacking pkg-config (0.29.1-0ubuntu3) ... Selecting previously unselected package sbuild-build-depends-crac-dummy. Preparing to unpack .../69-sbuild-build-depends-crac-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-crac-dummy (0.invalid.0) ... Setting up libpipeline1:ppc64el (1.5.1-2) ... Setting up libkeyutils1:ppc64el (1.6-6) ... Setting up libpsl5:ppc64el (0.20.2-2) ... Setting up libgkarrays1 (2.1.0+dfsg-2) ... Setting up libgkarrays-dev (2.1.0+dfsg-2) ... Setting up libmagic-mgc (1:5.37-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:ppc64el (2.61.1-2) ... No schema files found: doing nothing. Setting up libnghttp2-14:ppc64el (1.37.0-1) ... Setting up libmagic1:ppc64el (1:5.37-4) ... Setting up libdeflate0:ppc64el (1.2-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.37-4) ... Setting up libldap-common (2.4.47+dfsg-3ubuntu2) ... Setting up libicu63:ppc64el (63.2-2) ... Setting up libkrb5support0:ppc64el (1.17-5) ... Setting up libsasl2-modules-db:ppc64el (2.1.27+dfsg-1) ... Setting up libjellyfish-2.0-2:ppc64el (2.2.10-2) ... Setting up autotools-dev (20180224.1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2) ... Setting up libsigsegv2:ppc64el (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up pkg-config (0.29.1-0ubuntu3) ... Setting up libk5crypto3:ppc64el (1.17-5) ... Setting up libsasl2-2:ppc64el (2.1.27+dfsg-1) ... Setting up libroken18-heimdal:ppc64el (7.5.0+dfsg-3) ... Setting up libgzstream0 (1.5+dfsg-4) ... Setting up liblzma-dev:ppc64el (5.2.4-1) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-1ubuntu2) ... Setting up libuchardet0:ppc64el (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libkrb5-3:ppc64el (1.17-5) ... Setting up libbsd0:ppc64el (0.9.1-2) ... Setting up libelf1:ppc64el (0.176-1.1) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-7ubuntu3) ... Setting up libheimbase1-heimdal:ppc64el (7.5.0+dfsg-3) ... Setting up libpopt0:ppc64el (1.16-12) ... Setting up libfile-stripnondeterminism-perl (1.3.0-1) ... Setting up libjellyfish-2.0-dev:ppc64el (2.2.10-2) ... Setting up libtool (2.4.6-10) ... Setting up libasn1-8-heimdal:ppc64el (7.5.0+dfsg-3) ... Setting up m4 (1.4.18-2) ... Setting up libhcrypto4-heimdal:ppc64el (7.5.0+dfsg-3) ... Setting up libgzstream-dev (1.5+dfsg-4) ... Setting up libwind0-heimdal:ppc64el (7.5.0+dfsg-3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:ppc64el (1.17-5) ... Setting up libcroco3:ppc64el (0.6.12-3) ... Setting up libssh-4:ppc64el (0.9.0-1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12.20190723-1) ... Setting up groff-base (1.22.4-3) ... Setting up rsync (3.1.3-6) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Created symlink /etc/systemd/system/multi-user.target.wants/rsync.service → /lib/systemd/system/rsync.service. Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libhx509-5-heimdal:ppc64el (7.5.0+dfsg-3) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libkrb5-26-heimdal:ppc64el (7.5.0+dfsg-3) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:ppc64el (7.5.0+dfsg-3) ... Setting up libgssapi3-heimdal:ppc64el (7.5.0+dfsg-3) ... Setting up libldap-2.4-2:ppc64el (2.4.47+dfsg-3ubuntu2) ... Setting up libcurl3-gnutls:ppc64el (7.65.1-1ubuntu1) ... Setting up libhts2:ppc64el (1.9-11) ... Setting up libhts-dev:ppc64el (1.9-11) ... Setting up debhelper (12.2.3ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.3.0-1) ... Setting up sbuild-build-depends-crac-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.29-0ubuntu3) ... Processing triggers for systemd (242-2ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-157-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.32.51.20190702-1ubuntu1 dpkg-dev_1.19.7ubuntu1 g++-8_8.3.0-19ubuntu1 g++-9_9.1.0-9ubuntu2 gcc-8_8.3.0-19ubuntu1 gcc-9_9.1.0-9ubuntu2 libc6-dev_2.29-0ubuntu3 libstdc++-8-dev_8.3.0-19ubuntu1 libstdc++-9-dev_9.1.0-9ubuntu2 libstdc++6_9.1.0-9ubuntu2 linux-libc-dev_5.2.0-9.10 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.1 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2ubuntu4 base-passwd_3.5.46 bash_5.0-4ubuntu1 binutils_2.32.51.20190702-1ubuntu1 binutils-common_2.32.51.20190702-1ubuntu1 binutils-powerpc64le-linux-gnu_2.32.51.20190702-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.33.1-0.1ubuntu2 build-essential_12.6ubuntu2 bzip2_1.0.6-9.2 ca-certificates_20190110 coreutils_8.30-3ubuntu1 cpp_4:9.1.0-1ubuntu4 cpp-8_8.3.0-19ubuntu1 cpp-9_9.1.0-9ubuntu2 dash_0.5.10.2-6 debconf_1.5.72 debhelper_12.2.3ubuntu1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.3.0-1 diffutils_1:3.7-3 dmsetup_2:1.02.155-2ubuntu5 dpkg_1.19.7ubuntu1 dpkg-dev_1.19.7ubuntu1 dwz_0.12.20190723-1 e2fslibs_1.45.2-1ubuntu1 e2fsprogs_1.45.2-1ubuntu1 fakeroot_1.23-1 fdisk_2.33.1-0.1ubuntu2 file_1:5.37-4 findutils_4.6.0+git+20190209-2ubuntu1 g++_4:9.1.0-1ubuntu4 g++-8_8.3.0-19ubuntu1 g++-9_9.1.0-9ubuntu2 gcc_4:9.1.0-1ubuntu4 gcc-8_8.3.0-19ubuntu1 gcc-8-base_8.3.0-19ubuntu1 gcc-9_9.1.0-9ubuntu2 gcc-9-base_9.1.0-9ubuntu2 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.12-1ubuntu3 gpg-agent_2.2.12-1ubuntu3 gpgconf_2.2.12-1ubuntu3 gpgv_2.2.12-1ubuntu3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.10-0ubuntu1 hostname_3.21 init_1.57 init-system-helpers_1.57 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapparmor1_2.13.2-9ubuntu7 libapt-pkg5.0_1.8.0~alpha2ubuntu1 libapt-pkg5.90_1.9.1 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.2 libasan5_9.1.0-9ubuntu2 libasn1-8-heimdal_7.5.0+dfsg-3 libassuan0_2.5.3-7ubuntu1 libatomic1_9.1.0-9ubuntu2 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-1ubuntu1 libaudit1_1:2.8.5-1ubuntu1 libbinutils_2.32.51.20190702-1ubuntu1 libblkid1_2.33.1-0.1ubuntu2 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.2 libc-bin_2.29-0ubuntu3 libc-dev-bin_2.29-0ubuntu3 libc6_2.29-0ubuntu3 libc6-dev_2.29-0ubuntu3 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcc1-0_9.1.0-9ubuntu2 libcom-err2_1.45.2-1ubuntu1 libcomerr2_1.45.2-1ubuntu1 libcroco3_0.6.12-3 libcryptsetup12_2:2.1.0-5ubuntu2 libcurl3-gnutls_7.65.1-1ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.249ubuntu1 libdeflate0_1.2-1 libdevmapper1.02.1_2:1.02.155-2ubuntu5 libdpkg-perl_1.19.7ubuntu1 libelf1_0.176-1.1 libext2fs2_1.45.2-1ubuntu1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.3.0-1 libgcc-8-dev_8.3.0-19ubuntu1 libgcc-9-dev_9.1.0-9ubuntu2 libgcc1_1:9.1.0-9ubuntu2 libgcrypt20_1.8.4-5ubuntu1 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libgkarrays-dev_2.1.0+dfsg-2 libgkarrays1_2.1.0+dfsg-2 libglib2.0-0_2.61.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.8-2 libgomp1_9.1.0-9ubuntu2 libgpg-error0_1.36-7 libgssapi-krb5-2_1.17-5 libgssapi3-heimdal_7.5.0+dfsg-3 libgzstream-dev_1.5+dfsg-4 libgzstream0_1.5+dfsg-4 libhcrypto4-heimdal_7.5.0+dfsg-3 libheimbase1-heimdal_7.5.0+dfsg-3 libheimntlm0-heimdal_7.5.0+dfsg-3 libhogweed4_3.4.1-1 libhts-dev_1.9-11 libhts2_1.9-11 libhx509-5-heimdal_7.5.0+dfsg-3 libicu63_63.2-2 libidn11_1.33-2.2ubuntu2 libidn2-0_2.2.0-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libisl21_0.21-1 libitm1_9.1.0-9ubuntu2 libjellyfish-2.0-2_2.2.10-2 libjellyfish-2.0-dev_2.2.10-2 libjson-c3_0.12.1-1.3 libjson-c4_0.13.1+dfsg-2 libk5crypto3_1.17-5 libkeyutils1_1.6-6 libkmod2_26-1ubuntu1 libkrb5-26-heimdal_7.5.0+dfsg-3 libkrb5-3_1.17-5 libkrb5support0_1.17-5 libldap-2.4-2_2.4.47+dfsg-3ubuntu2 libldap-common_2.4.47+dfsg-3ubuntu2 liblockfile-bin_1.15-1 liblockfile1_1.15-1 liblsan0_9.1.0-9ubuntu2 liblz4-1_1.9.1-1 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-4 libmagic1_1:5.37-4 libmount1_2.33.1-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncurses6_6.1+20190713-1ubuntu2 libncursesw6_6.1+20190713-1ubuntu2 libnettle6_3.4.1-1 libnghttp2-14_1.37.0-1 libnpth0_1.6-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5ubuntu1 libpam-modules-bin_1.3.1-5ubuntu1 libpam-runtime_1.3.1-5ubuntu1 libpam0g_1.3.1-5ubuntu1 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpng16-16_1.6.37-1 libpopt0_1.16-12 libprocps7_2:3.3.15-2ubuntu2 libpsl5_0.20.2-2 libquadmath0_9.1.0-9ubuntu2 libreadline7_7.0-5 libreadline8_8.0-2 libroken18-heimdal_7.5.0+dfsg-3 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27+dfsg-1 libsasl2-modules-db_2.1.27+dfsg-1 libseccomp2_2.4.1-0ubuntu0.19.10.3 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libslang2_2.3.2-4 libsmartcols1_2.33.1-0.1ubuntu2 libsqlite3-0_3.29.0-1 libss2_1.45.2-1ubuntu1 libssh-4_0.9.0-1 libssl1.1_1.1.1c-1ubuntu3 libstdc++-8-dev_8.3.0-19ubuntu1 libstdc++-9-dev_9.1.0-9ubuntu2 libstdc++6_9.1.0-9ubuntu2 libsub-override-perl_0.09-2 libsystemd0_242-2ubuntu1 libtasn1-6_4.13-4 libtinfo6_6.1+20190713-1ubuntu2 libtool_2.4.6-10 libtsan0_9.1.0-9ubuntu2 libubsan1_9.1.0-9ubuntu2 libuchardet0_0.0.6-3 libudev1_242-2ubuntu1 libunistring2_0.9.10-2 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.33.1-0.1ubuntu2 libwind0-heimdal_7.5.0+dfsg-3 libxml2_2.9.4+dfsg1-7ubuntu3 libzstd1_1.3.8+dfsg-3 linux-libc-dev_5.2.0-9.10 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu2 lsb-base_10.2019051400ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17ubuntu3 mount_2.33.1-0.1ubuntu2 multiarch-support_2.29-0ubuntu3 ncurses-base_6.1+20190713-1ubuntu2 ncurses-bin_6.1+20190713-1ubuntu2 openssl_1.1.1c-1ubuntu3 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu2 patch_2.7.6-5 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-2 pkg-config_0.29.1-0ubuntu3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu2 readline-common_8.0-2 rsync_3.1.3-6 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-crac-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_242-2ubuntu1 systemd-sysv_242-2ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.95-2ubuntu1 tar_1.30+dfsg-6 tzdata_2019b-1 ubuntu-keyring_2018.09.18.1 util-linux_2.33.1-0.1ubuntu2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu2 zlib1g-dev_1:1.2.11.dfsg-1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Jul 26 20:44:09 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./crac_2.5.2+dfsg-2.dsc dpkg-source: info: extracting crac in crac-2.5.2+dfsg dpkg-source: info: unpacking crac_2.5.2+dfsg.orig.tar.xz dpkg-source: info: unpacking crac_2.5.2+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libgzstream.patch dpkg-source: info: applying use_debian_packaged_libjellyfish.patch dpkg-source: info: applying skip_failed_test_bug-14958.patch dpkg-source: info: applying use_debian_packages_libgtarrays.patch dpkg-source: info: applying reproducible_build.patch dpkg-source: info: applying cross.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-17324699 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-17324699 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-17324699 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package crac dpkg-buildpackage: info: source version 2.5.2+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: couldn't open directory 'config/m4': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config/m4'. libtoolize: copying file 'config/m4/libtool.m4' libtoolize: copying file 'config/m4/ltoptions.m4' libtoolize: copying file 'config/m4/ltsugar.m4' libtoolize: copying file 'config/m4/ltversion.m4' libtoolize: copying file 'config/m4/lt~obsolete.m4' configure.ac:147: installing 'config/compile' configure.ac:139: installing 'config/config.guess' configure.ac:139: installing 'config/config.sub' configure.ac:137: installing 'config/install-sh' configure.ac:137: installing 'config/missing' src/Makefile.am: installing 'config/depcomp' test_f/Makefile.am:109: warning: shell find . -name "*.should_get": non-POSIX variable name test_f/Makefile.am:109: (probably a GNU make extension) test_f/Makefile.am:110: warning: shell find . -name "*.fasta" -o -name "*.fa": non-POSIX variable name test_f/Makefile.am:110: (probably a GNU make extension) test_f/Makefile.am:111: warning: shell find . -name "*.fastq" -o -name "*.fq": non-POSIX variable name test_f/Makefile.am:111: (probably a GNU make extension) parallel-tests: installing 'config/test-driver' dh_auto_configure -a ./configure --build=powerpc64le-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... powerpc64le-unknown-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking for gawk... (cached) mawk checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C preprocessor... gcc -E checking whether make sets $(MAKE)... (cached) yes checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert powerpc64le-unknown-linux-gnu file names to powerpc64le-unknown-linux-gnu format... func_convert_file_noop checking how to convert powerpc64le-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... no checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for ld used by gcc... (cached) /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... (cached) yes checking for dpkg... /usr/bin/dpkg checking for rpmbuild... no checking for sqrt in -lm... yes checking for pthread_join in -lpthread... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether sys/types.h defines makedev... no checking sys/mkdev.h usability... no checking sys/mkdev.h presence... no checking for sys/mkdev.h... no checking sys/sysmacros.h usability... yes checking sys/sysmacros.h presence... yes checking for sys/sysmacros.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking for inttypes.h... (cached) yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking for memory.h... (cached) yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for inline... inline checking for int64_t... yes checking for off_t... yes checking for size_t... (cached) yes checking for struct stat.st_blksize... yes checking for uint32_t... yes checking for uint8_t... yes checking for ptrdiff_t... no checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for floor... yes checking for gettimeofday... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkfifo... yes checking for pow... yes checking for select... yes checking for sqrt... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for PROGRESSBAR... yes checking for gzread in -lz... yes checking for hts_hopen in -lhts... yes checking for GKARRAYS... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating control config.status: creating crac.spec config.status: creating Makefile config.status: creating src/Makefile config.status: creating scripts/Makefile config.status: creating src/libReadsInfo/Makefile config.status: creating src/libSSA/Makefile config.status: creating src/libReadsReader/Makefile config.status: creating src/libReadsReader/kseq/Makefile config.status: creating man/Makefile config.status: creating man/crac.1 config.status: creating scripts/crac-client config.status: creating test_f/Makefile config.status: creating test_f/bug/Makefile config.status: creating test_f/causes/Makefile config.status: creating test_f/cigar/Makefile config.status: creating test_f/splices_adjust/Makefile config.status: creating config/config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>/crac-2.5.2+dfsg' Making all in src make[2]: Entering directory '/<>/crac-2.5.2+dfsg/src' Making all in libReadsInfo make[3]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsInfo' g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-BioTagIndelInfo.o `test -f 'BioTagIndelInfo.cpp' || echo './'`BioTagIndelInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-BioUndeterminedInfo.o `test -f 'BioUndeterminedInfo.cpp' || echo './'`BioUndeterminedInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-cigarTypes.o `test -f 'cigarTypes.cpp' || echo './'`cigarTypes.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-Cigar.o `test -f 'Cigar.cpp' || echo './'`Cigar.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-DuplicationInfo.o `test -f 'DuplicationInfo.cpp' || echo './'`DuplicationInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-genericInfo.o `test -f 'genericInfo.cpp' || echo './'`genericInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-IndelInfo.o `test -f 'IndelInfo.cpp' || echo './'`IndelInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-repetitionInfo.o `test -f 'repetitionInfo.cpp' || echo './'`repetitionInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SeqErrInfo.o `test -f 'SeqErrInfo.cpp' || echo './'`SeqErrInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SNPInfo.o `test -f 'SNPInfo.cpp' || echo './'`SNPInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SpliceInfo.o `test -f 'SpliceInfo.cpp' || echo './'`SpliceInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SpliceInterInfo.o `test -f 'SpliceInterInfo.cpp' || echo './'`SpliceInterInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SpliceIntraInfo.o `test -f 'SpliceIntraInfo.cpp' || echo './'`SpliceIntraInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SpliceNoCoverInfo.o `test -f 'SpliceNoCoverInfo.cpp' || echo './'`SpliceNoCoverInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-SplicingInfo.o `test -f 'SplicingInfo.cpp' || echo './'`SplicingInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-samLine.o `test -f 'samLine.cpp' || echo './'`samLine.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-samHeader.o `test -f 'samHeader.cpp' || echo './'`samHeader.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-bamUtils.o `test -f 'bamUtils.cpp' || echo './'`bamUtils.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-tagInfo.o `test -f 'tagInfo.cpp' || echo './'`tagInfo.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsInfo_a-undeterminedErrorInfo.o `test -f 'undeterminedErrorInfo.cpp' || echo './'`undeterminedErrorInfo.cpp samHeader.cpp: In member function ‘bam_hdr_t* SamHeader::writeBamHeader(samFile*)’: samHeader.cpp:160:15: warning: ignoring return value of ‘int sam_hdr_write(samFile*, const bam_hdr_t*)’, declared with attribute warn_unused_result [-Wunused-result] 160 | sam_hdr_write(out,h); | ~~~~~~~~~~~~~^~~~~~~ In file included from /usr/include/string.h:494, from /usr/include/htslib/kstring.h:30, from samLine.h:60, from samLine.cpp:52: In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ../libReadsReader/readsReader.h:57, from ../Read.h:55, from ../ReadIndex.h:52, from ../Support.h:59, from tagInfo.h:71, from tagInfo.cpp:53: ../libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ ../libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ ../libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘CharOptionalField::CharOptionalField(const char*, char)’ at samLine.cpp:91:34: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘IntOptionalField::IntOptionalField(const char*, int)’ at samLine.cpp:117:34: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘IntOptionalField::IntOptionalField(const char*, uint)’ at samLine.cpp:121:34: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘StringOptionalField::StringOptionalField(const char*, std::string)’ at samLine.cpp:147:34: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘StringOptionalField::StringOptionalField(const char*, char*)’ at samLine.cpp:150:34: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘StringOptionalField::StringOptionalField(const char*, std::string)’ at samLine.cpp:147:34, inlined from ‘void SamLine::addOptionalField(const char*, const string&)’ at samLine.cpp:503:70: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘IntOptionalField::IntOptionalField(const char*, int)’ at samLine.cpp:117:34, inlined from ‘void SamLine::addOptionalField(const char*, int)’ at samLine.cpp:485:67: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘IntOptionalField::IntOptionalField(const char*, uint)’ at samLine.cpp:121:34, inlined from ‘void SamLine::addOptionalField(const char*, uint)’ at samLine.cpp:494:67: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘CharOptionalField::CharOptionalField(const char*, char)’ at samLine.cpp:91:34, inlined from ‘void SamLine::addOptionalField(const char*, char)’ at samLine.cpp:476:68: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘char* strncpy(char*, const char*, size_t)’, inlined from ‘OptionalField::OptionalField(const char*, char)’ at samLine.cpp:60:10, inlined from ‘StringOptionalField::StringOptionalField(const char*, std::string)’ at samLine.cpp:147:34, inlined from ‘void SamLine::addOptionalField(const char*, const char*)’ at samLine.cpp:512:70: /usr/include/powerpc64le-linux-gnu/bits/string_fortified.h:106:34: warning: ‘char* __builtin_strncpy(char*, const char*, long unsigned int)’ specified bound 2 equals destination size [-Wstringop-truncation] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rm -f libReadsInfo.a ar cru libReadsInfo.a libReadsInfo_a-BioTagIndelInfo.o libReadsInfo_a-BioUndeterminedInfo.o libReadsInfo_a-cigarTypes.o libReadsInfo_a-Cigar.o libReadsInfo_a-DuplicationInfo.o libReadsInfo_a-genericInfo.o libReadsInfo_a-IndelInfo.o libReadsInfo_a-repetitionInfo.o libReadsInfo_a-SeqErrInfo.o libReadsInfo_a-SNPInfo.o libReadsInfo_a-SpliceInfo.o libReadsInfo_a-SpliceInterInfo.o libReadsInfo_a-SpliceIntraInfo.o libReadsInfo_a-SpliceNoCoverInfo.o libReadsInfo_a-SplicingInfo.o libReadsInfo_a-samLine.o libReadsInfo_a-samHeader.o libReadsInfo_a-bamUtils.o libReadsInfo_a-tagInfo.o libReadsInfo_a-undeterminedErrorInfo.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libReadsInfo.a make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsInfo' Making all in libSSA make[3]: Entering directory '/<>/crac-2.5.2+dfsg/src/libSSA' g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cracIndex.o cracIndex.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bitarray.o bitarray.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bitrankw32int.o bitrankw32int.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o chrPosition.o chrPosition.cpp cracIndex.cpp:85:30: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 85 | cerr << "\tCompiled on " <<__DATE__ << endl << endl; | ^~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o HuffAlphabetRank.o HuffAlphabetRank.cpp In file included from ./seqan/basic.h:64, from ./seqan/sequence.h:27, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/basic/basic_holder.h: In function ‘void seqan::setValue(seqan::Holder&, TValue&)’: ./seqan/basic/basic_holder.h:1001:59: warning: typedef ‘THolderType’ locally defined but not used [-Wunused-local-typedefs] 1001 | typedef typename Value >::Type THolderType; | ^~~~~~~~~~~ ./seqan/basic/basic_holder.h: In function ‘typename seqan::Reference >::Type seqan::value(seqan::Holder&)’: ./seqan/basic/basic_holder.h:1027:59: warning: typedef ‘THolderType’ locally defined but not used [-Wunused-local-typedefs] 1027 | typedef typename Value >::Type THolderType; | ^~~~~~~~~~~ ./seqan/basic/basic_holder.h: In function ‘void seqan::assignValue(seqan::Holder&, const TSource&)’: ./seqan/basic/basic_holder.h:1051:59: warning: typedef ‘THostValue’ locally defined but not used [-Wunused-local-typedefs] 1051 | typedef typename Value >::Type THostValue; | ^~~~~~~~~~ In file included from ./seqan/sequence.h:38, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/sequence/lexical.h: In function ‘void seqan::compare_(seqan::Lexical&, TLeft&, TRight&)’: ./seqan/sequence/lexical.h:239:38: warning: typedef ‘TLeftValue’ locally defined but not used [-Wunused-local-typedefs] 239 | typedef typename Value::Type TLeftValue; | ^~~~~~~~~~ In file included from ./seqan/sequence.h:51, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/sequence/string_base.h: In function ‘void seqan::assign(seqan::String&, const TSource&, seqan::Tag)’: ./seqan/sequence/string_base.h:811:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 811 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::assign(seqan::String&, const TSource&, TSize, seqan::Tag)’: ./seqan/sequence/string_base.h:821:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 821 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::assign(seqan::String&, const TSourceValue*, seqan::Tag)’: ./seqan/sequence/string_base.h:834:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 834 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::assign(seqan::String&, const TSourceValue*, TSize, seqan::Tag)’: ./seqan/sequence/string_base.h:844:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 844 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::append(seqan::String&, const TSource&, seqan::Tag)’: ./seqan/sequence/string_base.h:1044:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1044 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::append(seqan::String&, const TSource&, typename seqan::Size >::Type, seqan::Tag)’: ./seqan/sequence/string_base.h:1056:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1056 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::append(seqan::String&, TSourceValue*, seqan::Tag)’: ./seqan/sequence/string_base.h:1070:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1070 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::append(seqan::String&, TSourceValue*, typename seqan::Size >::Type, seqan::Tag)’: ./seqan/sequence/string_base.h:1082:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1082 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::replace(seqan::String&, typename seqan::Size >::Type, typename seqan::Size >::Type, const TSource&, seqan::Tag)’: ./seqan/sequence/string_base.h:1249:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1249 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::replace(seqan::String&, typename seqan::Size >::Type, typename seqan::Size >::Type, const TSource&, typename seqan::Size >::Type, seqan::Tag)’: ./seqan/sequence/string_base.h:1263:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1263 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::replace(seqan::String&, typename seqan::Size >::Type, typename seqan::Size >::Type, const TSourceValue*, seqan::Tag)’: ./seqan/sequence/string_base.h:1279:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1279 | typedef String TTarget; | ^~~~~~~ ./seqan/sequence/string_base.h: In function ‘void seqan::replace(seqan::String&, typename seqan::Size >::Type, typename seqan::Size >::Type, const TSourceValue*, typename seqan::Size >::Type, seqan::Tag)’: ./seqan/sequence/string_base.h:1293:44: warning: typedef ‘TTarget’ locally defined but not used [-Wunused-local-typedefs] 1293 | typedef String TTarget; | ^~~~~~~ In file included from ./seqan/sequence.h:53, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/sequence/string_alloc.h: In function ‘typename seqan::Size > >::Type seqan::reserve(seqan::String >&, _TSize, Insist)’: ./seqan/sequence/string_alloc.h:456:63: warning: typedef ‘TSize’ locally defined but not used [-Wunused-local-typedefs] 456 | typedef typename Size< String > >::Type TSize; | ^~~~~ g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Huffman_Codes.o Huffman_Codes.cpp In file included from ./seqan/sequence.h:57, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/sequence/string_packed.h: In static member function ‘static typename seqan::Size::Type seqan::_ClearSpace_String_Packed_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type)’: ./seqan/sequence/string_packed.h:594:48: warning: typedef ‘TIterator’ locally defined but not used [-Wunused-local-typedefs] 594 | typedef typename Iterator::Type TIterator; | ^~~~~~~~~ ./seqan/sequence/string_packed.h: In function ‘typename seqan::Size > >::Type seqan::reserve(seqan::String >&, _TSize, Insist)’: ./seqan/sequence/string_packed.h:758:63: warning: typedef ‘TSize’ locally defined but not used [-Wunused-local-typedefs] 758 | typedef typename Size< String > >::Type TSize; | ^~~~~ In file included from ./seqan/sequence.h:62, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/sequence/sequence_multiple.h: In function ‘void seqan::subset(seqan::StringSet > >&, seqan::StringSet > >&, TIds, TLength)’: ./seqan/sequence/sequence_multiple.h:1647:41: warning: typedef ‘TId’ locally defined but not used [-Wunused-local-typedefs] 1647 | typedef typename Id::Type TId; | ^~~ In file included from ./seqan/index.h:82, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:11, from cracIndex.cpp:67: ./seqan/index/shape_base.h: In function ‘typename seqan::Value > >::Type seqan::hash(seqan::Shape >&, TIter)’: ./seqan/index/shape_base.h:273:62: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 273 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ ./seqan/index/shape_base.h: In function ‘typename seqan::Value > >::Type seqan::hash(seqan::Shape >&, TIter)’: ./seqan/index/shape_base.h:309:65: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 309 | typedef typename Value< Shape > >::Type THValue; | ^~~~~~~ ./seqan/index/shape_base.h:310:64: warning: typedef ‘TSize’ locally defined but not used [-Wunused-local-typedefs] 310 | typedef typename Size< Shape > >::Type TSize; | ^~~~~ ./seqan/index/shape_base.h: In function ‘typename seqan::Value >::Type seqan::hash(seqan::Shape&, TIter, TSize)’: ./seqan/index/shape_base.h:322:56: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 322 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ ./seqan/index/shape_base.h: In function ‘typename seqan::Value >::Type seqan::hashUpper(seqan::Shape&, TIter, TSize)’: ./seqan/index/shape_base.h:424:56: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 424 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ ./seqan/index/shape_base.h: In function ‘typename seqan::Value >::Type seqan::hash2(seqan::Shape&, TIter, TSize)’: ./seqan/index/shape_base.h:492:56: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 492 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ In file included from ./seqan/index.h:83, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:11, from cracIndex.cpp:67: ./seqan/index/shape_gapped.h: In function ‘typename seqan::Value > > >::Type seqan::hash(seqan::Shape > >&, TIter)’: ./seqan/index/shape_gapped.h:370:62: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 370 | typedef typename Value< Shape >::Type THValue; | ^~~~~~~ ./seqan/index/shape_gapped.h: In function ‘typename seqan::Value > >::Type seqan::hash(seqan::Shape >&, TIter, TSize)’: ./seqan/index/shape_gapped.h:387:75: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 387 | typedef typename Value< Shape > >::Type THValue; | ^~~~~~~ ./seqan/index/shape_gapped.h: In function ‘typename seqan::Value > >::Type seqan::hashUpper(seqan::Shape >&, TIter, TSize)’: ./seqan/index/shape_gapped.h:415:75: warning: typedef ‘THValue’ locally defined but not used [-Wunused-local-typedefs] 415 | typedef typename Value< Shape > >::Type THValue; | ^~~~~~~ In file included from ./seqan/file.h:66, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/multikey_qsort.h:6, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/diff_sample.h:8, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:13, from cracIndex.cpp:67: ./seqan/file/file_format_fasta_align.h: In function ‘void seqan::read(TFile&, seqan::Align&, FastaAlign)’: ./seqan/file/file_format_fasta_align.h:138:37: warning: typedef ‘TRow’ locally defined but not used [-Wunused-local-typedefs] 138 | typedef typename Row::Type TRow; | ^~~~ ./seqan/file/file_format_fasta_align.h: In function ‘void seqan::_write_impl(TFile&, seqan::Align&, TStringContainer&, FastaAlign)’: ./seqan/file/file_format_fasta_align.h:252:42: warning: typedef ‘TPosition’ locally defined but not used [-Wunused-local-typedefs] 252 | typedef typename Position::Type TPosition; | ^~~~~~~~~ In file included from ./seqan/file.h:69, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/multikey_qsort.h:6, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/diff_sample.h:8, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:13, from cracIndex.cpp:67: ./seqan/file/file_format_cgviz.h: In function ‘void seqan::_write_impl(TFile&, seqan::Align&, TStringContainer&, CGViz)’: ./seqan/file/file_format_cgviz.h:66:37: warning: typedef ‘TRow’ locally defined but not used [-Wunused-local-typedefs] 66 | typedef typename Row::Type TRow; | ^~~~ In file included from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:13, from cracIndex.cpp:67: /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/diff_sample.h: In function ‘void calcExhaustiveDC(T, bool, bool)’: /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/diff_sample.h:156:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 156 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~ /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/diff_sample.h:156:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 156 | if(!diffs[d1]) diffCnt++; diffs[d1] = true; | ^~~~~ /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/diff_sample.h:157:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 157 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~ /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/diff_sample.h:157:32: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 157 | if(!diffs[d2]) diffCnt++; diffs[d2] = true; | ^~~~~ In file included from cracIndex.cpp:67: /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h: In destructor ‘KarkkainenBlockwiseSA::~KarkkainenBlockwiseSA()’: /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:206:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 206 | if(_dc != NULL) delete _dc; _dc = NULL; // difference cover sample | ^~ /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:206:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 206 | if(_dc != NULL) delete _dc; _dc = NULL; // difference cover sample | ^~~ /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h: In member function ‘void KarkkainenBlockwiseSA::buildSamples()’: /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:380:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs] 380 | typedef typename Value::Type TAlphabet; | ^~~~~~~~~ /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h: In member function ‘virtual void KarkkainenBlockwiseSA::nextBlock()’: /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:745:37: warning: typedef ‘TAlphabet’ locally defined but not used [-Wunused-local-typedefs] 745 | typedef typename Value::Type TAlphabet; | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o locateOnGenome.o locateOnGenome.cpp In file included from ./seqan/sequence.h:57, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/sequence/string_packed.h: In instantiation of ‘struct seqan::_PackedConsts, seqan::Packed<> > >’: ./seqan/sequence/string_packed.h:906:43: required from ‘typename seqan::Position > >::Type seqan::position(const seqan::Iter >&) [with TContainer = const seqan::String, seqan::Packed<> >; THostspec = seqan::Alloc; typename seqan::Position > >::Type = long unsigned int]’ ./seqan/sequence/string_packed.h:1237:17: required from ‘typename seqan::Difference > >::Type seqan::operator-(const seqan::Iter >&, const seqan::Iter >&) [with TContainer = const seqan::String, seqan::Packed<> >; THostspec = seqan::Alloc; typename seqan::Difference > >::Type = long int]’ ./seqan/sequence/string_base.h:181:29: required from ‘typename seqan::Size >::Type seqan::length(const seqan::String&) [with TValue = seqan::SimpleType; TSpec = seqan::Packed<>; typename seqan::Size >::Type = long unsigned int]’ /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:354:32: required from here ./seqan/sequence/string_packed.h:294:37: warning: comparison between ‘enum seqan::BitsPerValue >::’ and ‘enum seqan::BitsPerValue::’ [-Wenum-compare] 294 | VALUES_PER_WORD = (BITS_PER_VALUE > BITS_PER_HOST_VALUE) ? 1 : (BITS_PER_HOST_VALUE / BITS_PER_VALUE), | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ ./seqan/sequence/string_packed.h: In instantiation of ‘struct seqan::_PackedConsts, seqan::Packed<> > >’: ./seqan/sequence/string_packed.h:958:50: required from ‘typename seqan::GetValue > >::Type seqan::getValue(const seqan::Iter >&) [with TContainer = seqan::String, seqan::Packed<> >; THostspec = seqan::Alloc; typename seqan::GetValue > >::Type = seqan::SimpleType]’ ./seqan/basic/basic_proxy.h:242:17: required from ‘typename seqan::GetValue >::Type seqan::getValue(const seqan::Proxy&) [with TSpec = seqan::IteratorProxy, seqan::Packed<> >, seqan::Packed<> > >; typename seqan::GetValue >::Type = seqan::SimpleType]’ ./seqan/basic/basic_proxy.h:272:34: required from ‘typename seqan::Convert >::Type seqan::convertImpl(seqan::Convert, const seqan::Proxy&) [with TTarget = char; T = seqan::Proxy, seqan::Packed<> >, seqan::Packed<> > > >; TSpec = seqan::IteratorProxy, seqan::Packed<> >, seqan::Packed<> > >; typename seqan::Convert >::Type = char]’ ./seqan/basic/basic_converter.h:111:20: required from ‘typename seqan::Convert::Type seqan::convert(const TSource&) [with TTarget = char; TSource = seqan::Proxy, seqan::Packed<> >, seqan::Packed<> > > >; typename seqan::Convert::Type = char]’ cracIndex.cpp:224:50: required from here ./seqan/sequence/string_packed.h:294:37: warning: comparison between ‘enum seqan::BitsPerValue >::’ and ‘enum seqan::BitsPerValue::’ [-Wenum-compare] In file included from ./seqan/basic.h:101, from ./seqan/sequence.h:27, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/basic/basic_alphabet_trait_basic.h: In instantiation of ‘void seqan::_arrayCopyForward_Pointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]’: ./seqan/basic/basic_alphabet_trait_basic.h:226:27: required from ‘void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]’ ./seqan/basic/basic_alphabet_trait_basic.h:102:18: required from ‘void seqan::_arrayConstructCopy_Pointer(TValue*, TValue*, TValue*, seqan::True) [with TValue = seqan::SimpleType]’ ./seqan/basic/basic_alphabet_trait_basic.h:121:29: required from ‘void seqan::arrayConstructCopy(TValue*, TValue*, TValue*) [with TValue = seqan::SimpleType]’ ./seqan/sequence/string_alloc.h:421:21: required from ‘typename seqan::Size > >::Type seqan::reserve(seqan::String >&, _TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = void; _TSize = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size > >::Type = long unsigned int]’ ./seqan/sequence/string_base.h:1433:33: required from ‘static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc >; TExpand = const seqan::Tag; typename seqan::Size::Type = long unsigned int]’ ./seqan/sequence/string_base.h:1459:52: required from ‘typename seqan::Size >::Type seqan::resize(seqan::String&, TSize, seqan::Tag) [with TValue = seqan::SimpleType; TSpec = seqan::Alloc; TSize = long unsigned int; TExpand = seqan::TagExact_; typename seqan::Size >::Type = long unsigned int]’ ./seqan/sequence/sequence_interface.h:1360:15: required from ‘typename seqan::Size::Type seqan::resize(T&, TSize) [with T = seqan::String, seqan::Alloc >; TSize = long unsigned int; typename seqan::Size::Type = long unsigned int]’ ./seqan/file/file_format_fasta.h:269:8: required from ‘void seqan::read(TFile&, TData&, TSize, Fasta) [with TFile = std::basic_ifstream; TData = seqan::String, seqan::Alloc >; TSize = long unsigned int; seqan::Fasta = const seqan::Tag]’ ./seqan/file/file_format_fasta.h:309:6: required from ‘void seqan::read(TFile&, TData&, Fasta) [with TFile = std::basic_ifstream; TData = seqan::String, seqan::Alloc >; seqan::Fasta = const seqan::Tag]’ cracIndex.cpp:142:40: required from here ./seqan/basic/basic_alphabet_trait_basic.h:207:9: warning: ‘void* memmove(void*, const void*, size_t)’ writing to an object of type ‘struct seqan::SimpleType’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 207 | memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from ./seqan/basic.h:106, from ./seqan/sequence.h:27, from /<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt/blockwise_sa.h:10, from cracIndex.cpp:67: ./seqan/basic/basic_alphabet_simple.h:57:8: note: ‘struct seqan::SimpleType’ declared here 57 | struct SimpleType | ^~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o locateTags.o locateTags.cpp In file included from /usr/include/libGkArrays/readsReader.h:109, from locateTags.h:60, from locateTags.cpp:53: /usr/include/libGkArrays/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ /usr/include/libGkArrays/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ /usr/include/libGkArrays/readsReader.h:111:1: note: in expansion of macro ‘KSEQ_INIT’ 111 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SSA.o SSA.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utils.o utils.cpp g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bwt -I/usr/include/libGkArrays -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GenomeInfo.o GenomeInfo.cpp rm -f libSSA.a ar cru libSSA.a bitarray.o bitrankw32int.o chrPosition.o HuffAlphabetRank.o Huffman_Codes.o locateOnGenome.o locateTags.o SSA.o utils.o GenomeInfo.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libSSA.a /bin/bash ../../libtool --tag=CXX --mode=link g++ -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lm -lpthread -lSSA -L/<>/crac-2.5.2+dfsg/src/libSSA/ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o crac-index cracIndex.o libSSA.a -lhts -lz -lpthread -lm libtool: link: g++ -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o crac-index cracIndex.o -lSSA -L/<>/crac-2.5.2+dfsg/src/libSSA/ libSSA.a -lhts -lz -lpthread -lm make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libSSA' Making all in libReadsReader make[3]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' Making all in kseq make[4]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsReader/kseq' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsReader/kseq' make[4]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' g++ -DHAVE_CONFIG_H -I. -I../../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libReadsReader_a-readsReader.o `test -f 'readsReader.cpp' || echo './'`readsReader.cpp rm -f libReadsReader.a ar cru libReadsReader.a libReadsReader_a-readsReader.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libReadsReader.a make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' make[3]: Entering directory '/<>/crac-2.5.2+dfsg/src' g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Classifier.o Classifier.cpp g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o classifyTags.o classifyTags.cpp g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o GkReadIndex.o GkReadIndex.cpp g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o JellyReadIndex.o JellyReadIndex.cpp classifyTags.cpp:421:38: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 421 | headerTemplate << "#Created on " <<__DATE__ << endl << "#" << endl; | ^~~~~~~~ In file included from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from GkReadIndex.h:60, from GkReadIndex.cpp:55: /usr/include/libGkArrays/largebinvect.hxx:119:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 119 | LargeBinVect(const CountWordSize length = 0, const bool value = 0) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:120:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | LargeBinVect(const char *binary_string) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:121:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | LargeBinVect(const LargeBinVect &v) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:127:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 127 | inline LargeBinVect &operator=(const LargeBinVect &v) throw (std::bad_alloc); | ^~~~~ In file included from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from GkReadIndex.h:60, from GkReadIndex.cpp:55: /usr/include/libGkArrays/largebinvect.hxx:155:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 155 | inline LargeBinVect operator()(const CountWordSize b = 0, const CountWordSize lg = ~((CountWordSize)0)) const throw (std::bad_alloc, std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:158:116: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 158 | inline unsigned long int GetValue(const CountWordSize b = 0, const CountWordSize lg = ~((CountWordSize)0)) const throw (std::bad_alloc, std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:161:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 161 | inline bool operator[](const CountWordSize i) const throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 177 | inline bool GetBit(const CountWordSize i) const throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:179:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 179 | inline LargeBinVect &SetBit(const CountWordSize i, const bool value) throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:182:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 182 | inline LargeBinVect &SetBitRange(const CountWordSize i, const CountWordSize j, const long unsigned int value) throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:191:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 191 | inline LargeBinVect &Resize(const CountWordSize length, const bool value = 0) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:194:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | inline LargeBinVect &Append(const bool value) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:197:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 197 | inline LargeBinVect &Prepend(const bool value) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:200:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 200 | inline LargeBinVect &operator+=(const LargeBinVect &v) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:203:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 203 | inline LargeBinVect &operator++() throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:205:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 205 | inline LargeBinVect operator++(int) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:208:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 208 | inline LargeBinVect &operator--() throw (BinVectOverflow); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:210:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 210 | inline LargeBinVect operator--(int) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:214:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 214 | inline LargeBinVect Split(const CountWordSize i) throw (std::out_of_range, std::bad_alloc); | ^~~~~ In file included from /usr/include/libGkArrays/largebinvect.hxx:241, from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from GkReadIndex.h:60, from GkReadIndex.cpp:55: /usr/include/libGkArrays/largebinvect.cxx:121:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | unsigned char *MyCalloc(const CountWordSize w, const int value = -1) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:136:89: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 136 | LargeBinVect::LargeBinVect(const CountWordSize length, const bool value) throw (std::bad_alloc) | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:147:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 147 | LargeBinVect::LargeBinVect(const char *binary_string) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:167:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 167 | LargeBinVect::LargeBinVect(const LargeBinVect &v) throw (std::bad_alloc) | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:184:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 184 | LargeBinVect &LargeBinVect::operator=(const LargeBinVect &v) throw (std::bad_alloc) { | ^~~~~ In file included from /usr/include/libGkArrays/largebinvect.hxx:241, from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from GkReadIndex.h:60, from GkReadIndex.cpp:55: /usr/include/libGkArrays/largebinvect.cxx:339:123: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 339 | LargeBinVect LargeBinVect::operator()(const CountWordSize b, const CountWordSize lg) const throw (std::bad_alloc, std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:363:110: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 363 | unsigned long int LargeBinVect::GetValue(const CountWordSize b, const CountWordSize lg) const throw (std::bad_alloc, std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:397:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 397 | bool LargeBinVect::operator[](const CountWordSize i) const throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:478:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 478 | bool LargeBinVect::GetBit(const CountWordSize i) const throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:493:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 493 | LargeBinVect &LargeBinVect::SetBit(const CountWordSize i, const bool value) throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:513:148: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 513 | LargeBinVect &LargeBinVect::SetBitRange(const CountWordSize i, const CountWordSize j, const long unsigned int value) throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:619:112: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 619 | LargeBinVect &LargeBinVect::Resize(const CountWordSize length, const bool value) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:653:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 653 | LargeBinVect &LargeBinVect::Append(const bool value) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:661:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 661 | LargeBinVect &LargeBinVect::Prepend(const bool value) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:673:108: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 673 | LargeBinVect &LargeBinVect::operator+=(const LargeBinVect &v) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:711:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 711 | LargeBinVect &LargeBinVect::operator++() throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:727:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 727 | LargeBinVect LargeBinVect::operator++(int) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:734:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 734 | LargeBinVect &LargeBinVect::operator--() throw (BinVectOverflow) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:750:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 750 | LargeBinVect LargeBinVect::operator--(int) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:757:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 757 | LargeBinVect LargeBinVect::Split(const CountWordSize i) throw (std::out_of_range, std::bad_alloc) { | ^~~~~ In file included from /usr/include/libGkArrays/gkArrays.h:112, from GkReadIndex.h:60, from GkReadIndex.cpp:55: /usr/include/libGkArrays/solArray.h:160:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 160 | SolArray(void *ptr, array_type t, uintSA nbElements) throw (invalid_argument); | ^~~~~ /usr/include/libGkArrays/solArray.h:202:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 202 | void realloc(uintSA nbElements) throw (logic_error); | ^~~~~ In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from GkReadIndex.h:59, from GkReadIndex.cpp:55: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o crac.o crac.cpp In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from classifyTags.h:53, from classifyTags.cpp:52: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ crac.cpp:213:34: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 213 | printf("\tCompiled on %s.\n\n",__DATE__); | ^~~~~~~~ In file included from ./libReadsReader/readsReader.h:57, from ./Read.h:55, from ./ReadIndex.h:52, from ./Classifier.h:56, from Classifier.cpp:52: ./libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ ./libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ ./libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from JellyReadIndex.h:59, from JellyReadIndex.cpp:55: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from crac.cpp:69: /usr/include/libGkArrays/largebinvect.hxx:119:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 119 | LargeBinVect(const CountWordSize length = 0, const bool value = 0) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:120:43: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 120 | LargeBinVect(const char *binary_string) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:121:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | LargeBinVect(const LargeBinVect &v) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:127:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 127 | inline LargeBinVect &operator=(const LargeBinVect &v) throw (std::bad_alloc); | ^~~~~ In file included from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from crac.cpp:69: /usr/include/libGkArrays/largebinvect.hxx:155:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 155 | inline LargeBinVect operator()(const CountWordSize b = 0, const CountWordSize lg = ~((CountWordSize)0)) const throw (std::bad_alloc, std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:158:116: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 158 | inline unsigned long int GetValue(const CountWordSize b = 0, const CountWordSize lg = ~((CountWordSize)0)) const throw (std::bad_alloc, std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:161:55: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 161 | inline bool operator[](const CountWordSize i) const throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:177:51: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 177 | inline bool GetBit(const CountWordSize i) const throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:179:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 179 | inline LargeBinVect &SetBit(const CountWordSize i, const bool value) throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:182:128: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 182 | inline LargeBinVect &SetBitRange(const CountWordSize i, const CountWordSize j, const long unsigned int value) throw (std::out_of_range); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:191:96: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 191 | inline LargeBinVect &Resize(const CountWordSize length, const bool value = 0) throw (std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:194:64: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 194 | inline LargeBinVect &Append(const bool value) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:197:65: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 197 | inline LargeBinVect &Prepend(const bool value) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:200:88: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 200 | inline LargeBinVect &operator+=(const LargeBinVect &v) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:203:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 203 | inline LargeBinVect &operator++() throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:205:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 205 | inline LargeBinVect operator++(int) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:208:52: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 208 | inline LargeBinVect &operator--() throw (BinVectOverflow); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:210:54: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 210 | inline LargeBinVect operator--(int) throw (BinVectOverflow, std::bad_alloc); | ^~~~~ /usr/include/libGkArrays/largebinvect.hxx:214:67: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 214 | inline LargeBinVect Split(const CountWordSize i) throw (std::out_of_range, std::bad_alloc); | ^~~~~ In file included from /usr/include/libGkArrays/largebinvect.hxx:241, from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from crac.cpp:69: /usr/include/libGkArrays/largebinvect.cxx:121:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 121 | unsigned char *MyCalloc(const CountWordSize w, const int value = -1) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:136:89: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 136 | LargeBinVect::LargeBinVect(const CountWordSize length, const bool value) throw (std::bad_alloc) | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:147:70: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 147 | LargeBinVect::LargeBinVect(const char *binary_string) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:167:81: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 167 | LargeBinVect::LargeBinVect(const LargeBinVect &v) throw (std::bad_alloc) | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:184:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 184 | LargeBinVect &LargeBinVect::operator=(const LargeBinVect &v) throw (std::bad_alloc) { | ^~~~~ In file included from /usr/include/libGkArrays/largebinvect.hxx:241, from /usr/include/libGkArrays/bitvector.hxx:104, from /usr/include/libGkArrays/solArray.h:106, from /usr/include/libGkArrays/gkArrays.h:112, from crac.cpp:69: /usr/include/libGkArrays/largebinvect.cxx:339:123: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 339 | LargeBinVect LargeBinVect::operator()(const CountWordSize b, const CountWordSize lg) const throw (std::bad_alloc, std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:363:110: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 363 | unsigned long int LargeBinVect::GetValue(const CountWordSize b, const CountWordSize lg) const throw (std::bad_alloc, std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:397:75: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 397 | bool LargeBinVect::operator[](const CountWordSize i) const throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:478:71: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 478 | bool LargeBinVect::GetBit(const CountWordSize i) const throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:493:107: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 493 | LargeBinVect &LargeBinVect::SetBit(const CountWordSize i, const bool value) throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:513:148: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 513 | LargeBinVect &LargeBinVect::SetBitRange(const CountWordSize i, const CountWordSize j, const long unsigned int value) throw (std::out_of_range) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:619:112: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 619 | LargeBinVect &LargeBinVect::Resize(const CountWordSize length, const bool value) throw (std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:653:84: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 653 | LargeBinVect &LargeBinVect::Append(const bool value) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:661:85: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 661 | LargeBinVect &LargeBinVect::Prepend(const bool value) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:673:108: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 673 | LargeBinVect &LargeBinVect::operator+=(const LargeBinVect &v) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:711:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 711 | LargeBinVect &LargeBinVect::operator++() throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:727:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 727 | LargeBinVect LargeBinVect::operator++(int) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:734:72: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 734 | LargeBinVect &LargeBinVect::operator--() throw (BinVectOverflow) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:750:74: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 750 | LargeBinVect LargeBinVect::operator--(int) throw (BinVectOverflow, std::bad_alloc) { | ^~~~~ /usr/include/libGkArrays/largebinvect.cxx:757:87: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 757 | LargeBinVect LargeBinVect::Split(const CountWordSize i) throw (std::out_of_range, std::bad_alloc) { | ^~~~~ In file included from /usr/include/libGkArrays/gkArrays.h:112, from crac.cpp:69: /usr/include/libGkArrays/solArray.h:160:58: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 160 | SolArray(void *ptr, array_type t, uintSA nbElements) throw (invalid_argument); | ^~~~~ /usr/include/libGkArrays/solArray.h:202:37: warning: dynamic exception specifications are deprecated in C++11 [-Wdeprecated] 202 | void realloc(uintSA nbElements) throw (logic_error); | ^~~~~ crac.cpp: In function ‘int main(int, char**)’: crac.cpp:1009:26: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] 1009 | } catch (bad_alloc e) { | ^ Classifier.cpp: In member function ‘virtual void SingleReadClassifier::classify()’: Classifier.cpp:203:33: warning: ‘bioundetermined_type’ may be used uninitialized in this function [-Wmaybe-uninitialized] 203 | taginfo->addBioUndetermined(suppoBreak->getLocationStartBreak(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 | suppoBreak->getPositionStartBreak(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 | bioundetermined_type, | ~~~~~~~~~~~~~~~~~~~~~ 206 | message.c_str()); | ~~~~~~~~~~~~~~~~ In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from classifyTags.h:53, from crac.cpp:66: libReadsReader/readsReader.h: At global scope: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Parameters.o Parameters.cpp g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o SupportBreak.o SupportBreak.cpp g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o BreakList.o BreakList.cpp g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o CandidatBreak.o CandidatBreak.cpp In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from Support.h:59, from SupportBreak.cpp:55: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Support.o Support.cpp g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o locateServer.o locateServer.cpp locateServer.cpp: In function ‘void* launchSubServer(void*)’: locateServer.cpp:464:8: warning: unused variable ‘threshold’ [-Wunused-variable] 464 | uint threshold = indexTags->getFactorLength(); | ^~~~~~~~~ locateServer.cpp:466:9: warning: variable ‘dontCare’ set but not used [-Wunused-but-set-variable] 466 | char *dontCare, *variable, *tag_length, *factor; | ^~~~~~~~ locateServer.cpp: In function ‘void locateServer(ClassifyTags*, const char*, const char*)’: locateServer.cpp:717:9: warning: variable ‘dontCare’ set but not used [-Wunused-but-set-variable] 717 | char *dontCare; | ^~~~~~~~ In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from Support.h:59, from Support.cpp:57: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ In file included from libReadsReader/readsReader.h:57, from Read.h:55, from ReadIndex.h:52, from classifyTags.h:53, from locateServer.cpp:59: libReadsReader/readsReader.h: At global scope: libReadsReader/kseq/kseq.h:169:14: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function] 169 | static int kseq_read(kseq_t *seq) \ | ^~~~~~~~~ libReadsReader/kseq/kseq.h:227:3: note: in expansion of macro ‘__KSEQ_READ’ 227 | __KSEQ_READ | ^~~~~~~~~~~ libReadsReader/readsReader.h:59:1: note: in expansion of macro ‘KSEQ_INIT’ 59 | KSEQ_INIT(gzFile, gzread) | ^~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o utils.o utils.cpp g++ -DHAVE_CONFIG_H -I. -I../config -I/<>/crac-2.5.2+dfsg -I/<>/crac-2.5.2+dfsg/src -I/<>/crac-2.5.2+dfsg/src/libSSA -I/<>/crac-2.5.2+dfsg/src/libSSA/karkkainen_bw -I/usr/include/jellyfish -I/usr/include/libGkArrays -I/usr/include/libProgressBar -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -ansi -funroll-loops -O4 -DNDEBUG -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Bitset.o Bitset.cpp ln -s -f /<>/crac-2.5.2+dfsg/src/libSSA/crac-index crac-index /bin/bash ../libtool --tag=CXX --mode=link g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -lGkArrays -ljellyfish-2.0 -lm -lpthread -lhts -lSSA -lReadsInfo -lReadsReader -lgzstream -L/<>/crac-2.5.2+dfsg/src/libSSA -L/<>/crac-2.5.2+dfsg/src/libReadsInfo -L/<>/crac-2.5.2+dfsg/src/libReadsReader -ljellyfish-2.0 -lGkArrays -lProgressBar -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o crac Classifier.o classifyTags.o GkReadIndex.o JellyReadIndex.o crac.o Parameters.o SupportBreak.o BreakList.o CandidatBreak.o Support.o locateServer.o utils.o Bitset.o /<>/crac-2.5.2+dfsg/src/libSSA/libSSA.a /<>/crac-2.5.2+dfsg/src/libReadsInfo/libReadsInfo.a /<>/crac-2.5.2+dfsg/src/libReadsReader/libReadsReader.a -lhts -lz -lpthread -lm libtool: link: g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/crac-2.5.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o crac Classifier.o classifyTags.o GkReadIndex.o JellyReadIndex.o crac.o Parameters.o SupportBreak.o BreakList.o CandidatBreak.o Support.o locateServer.o utils.o Bitset.o -lSSA -lReadsInfo -lReadsReader -lgzstream -L/<>/crac-2.5.2+dfsg/src/libSSA -L/<>/crac-2.5.2+dfsg/src/libReadsInfo -L/<>/crac-2.5.2+dfsg/src/libReadsReader /usr/lib/powerpc64le-linux-gnu/libjellyfish-2.0.so -lGkArrays -lProgressBar /<>/crac-2.5.2+dfsg/src/libSSA/libSSA.a /<>/crac-2.5.2+dfsg/src/libReadsInfo/libReadsInfo.a /<>/crac-2.5.2+dfsg/src/libReadsReader/libReadsReader.a -lhts -lz -lpthread -lm make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/src' make[2]: Leaving directory '/<>/crac-2.5.2+dfsg/src' Making all in man make[2]: Entering directory '/<>/crac-2.5.2+dfsg/man' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/crac-2.5.2+dfsg/man' Making all in scripts make[2]: Entering directory '/<>/crac-2.5.2+dfsg/scripts' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/crac-2.5.2+dfsg/scripts' Making all in test_f make[2]: Entering directory '/<>/crac-2.5.2+dfsg/test_f' Making all in causes make[3]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/causes' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/causes' Making all in bug make[3]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/bug' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/bug' Making all in cigar make[3]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/cigar' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/cigar' Making all in splices_adjust make[3]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/splices_adjust' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/splices_adjust' make[3]: Entering directory '/<>/crac-2.5.2+dfsg/test_f' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f' make[2]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f' make[2]: Entering directory '/<>/crac-2.5.2+dfsg' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>/crac-2.5.2+dfsg' make[1]: Leaving directory '/<>/crac-2.5.2+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/crac-2.5.2+dfsg' # Sequence of tests is important so parallel execution is no option dh_auto_test --no-parallel make -j1 check VERBOSE=1 make[2]: Entering directory '/<>/crac-2.5.2+dfsg' Making check in src make[3]: Entering directory '/<>/crac-2.5.2+dfsg/src' Making check in libReadsInfo make[4]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsInfo' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsInfo' Making check in libSSA make[4]: Entering directory '/<>/crac-2.5.2+dfsg/src/libSSA' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libSSA' Making check in libReadsReader make[4]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' Making check in kseq make[5]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsReader/kseq' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsReader/kseq' make[5]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' make[4]: Entering directory '/<>/crac-2.5.2+dfsg/src' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/src' make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/src' Making check in man make[3]: Entering directory '/<>/crac-2.5.2+dfsg/man' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/man' Making check in scripts make[3]: Entering directory '/<>/crac-2.5.2+dfsg/scripts' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/scripts' Making check in test_f make[3]: Entering directory '/<>/crac-2.5.2+dfsg/test_f' Making check in causes make[4]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/causes' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/causes' Making check in bug make[4]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/bug' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/bug' Making check in cigar make[4]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/cigar' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/cigar' Making check in splices_adjust make[4]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/splices_adjust' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/splices_adjust' make[4]: Entering directory '/<>/crac-2.5.2+dfsg/test_f' make check-TESTS make[5]: Entering directory '/<>/crac-2.5.2+dfsg/test_f' make[6]: Entering directory '/<>/crac-2.5.2+dfsg/test_f' PASS: index_genomes.sh PASS: launch_sg.sh PASS: test_index.sh ============================================================================ Testsuite summary for crac 2.5.2 ============================================================================ # TOTAL: 3 # PASS: 3 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[6]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f' make[5]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f' make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f' make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f' make[3]: Entering directory '/<>/crac-2.5.2+dfsg' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>/crac-2.5.2+dfsg' make[2]: Leaving directory '/<>/crac-2.5.2+dfsg' make[1]: Leaving directory '/<>/crac-2.5.2+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/crac-2.5.2\+dfsg/debian/crac AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/crac-2.5.2+dfsg' Making install in src make[2]: Entering directory '/<>/crac-2.5.2+dfsg/src' Making install in libReadsInfo make[3]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsInfo' make[4]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsInfo' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsInfo' make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsInfo' Making install in libSSA make[3]: Entering directory '/<>/crac-2.5.2+dfsg/src/libSSA' make[4]: Entering directory '/<>/crac-2.5.2+dfsg/src/libSSA' /bin/mkdir -p '/<>/crac-2.5.2+dfsg/debian/crac/usr/bin' /bin/bash ../../libtool --mode=install /usr/bin/install -c crac-index '/<>/crac-2.5.2+dfsg/debian/crac/usr/bin' libtool: install: /usr/bin/install -c crac-index /<>/crac-2.5.2+dfsg/debian/crac/usr/bin/crac-index make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libSSA' make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libSSA' Making install in libReadsReader make[3]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' Making install in kseq make[4]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsReader/kseq' make[5]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsReader/kseq' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/crac-2.5.2+dfsg/debian/crac/usr/include/crac-2.5.2/kseq' /usr/bin/install -c -m 644 kseq.h '/<>/crac-2.5.2+dfsg/debian/crac/usr/include/crac-2.5.2/kseq' make[5]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsReader/kseq' make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsReader/kseq' make[4]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' make[5]: Entering directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/src/libReadsReader' make[3]: Entering directory '/<>/crac-2.5.2+dfsg/src' make[4]: Entering directory '/<>/crac-2.5.2+dfsg/src' /bin/mkdir -p '/<>/crac-2.5.2+dfsg/debian/crac/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c crac '/<>/crac-2.5.2+dfsg/debian/crac/usr/bin' libtool: install: /usr/bin/install -c crac /<>/crac-2.5.2+dfsg/debian/crac/usr/bin/crac make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/src' make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/src' make[2]: Leaving directory '/<>/crac-2.5.2+dfsg/src' Making install in man make[2]: Entering directory '/<>/crac-2.5.2+dfsg/man' make[3]: Entering directory '/<>/crac-2.5.2+dfsg/man' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/crac-2.5.2+dfsg/debian/crac/usr/share/man/man1' /usr/bin/install -c -m 644 crac.1 '/<>/crac-2.5.2+dfsg/debian/crac/usr/share/man/man1' make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/man' make[2]: Leaving directory '/<>/crac-2.5.2+dfsg/man' Making install in scripts make[2]: Entering directory '/<>/crac-2.5.2+dfsg/scripts' make[3]: Entering directory '/<>/crac-2.5.2+dfsg/scripts' /bin/mkdir -p '/<>/crac-2.5.2+dfsg/debian/crac/usr/bin' /usr/bin/install -c crac-client '/<>/crac-2.5.2+dfsg/debian/crac/usr/bin' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/scripts' make[2]: Leaving directory '/<>/crac-2.5.2+dfsg/scripts' Making install in test_f make[2]: Entering directory '/<>/crac-2.5.2+dfsg/test_f' Making install in causes make[3]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/causes' make[4]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/causes' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/causes' make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/causes' Making install in bug make[3]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/bug' make[4]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/bug' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/bug' make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/bug' Making install in cigar make[3]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/cigar' make[4]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/cigar' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/cigar' make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/cigar' Making install in splices_adjust make[3]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/splices_adjust' make[4]: Entering directory '/<>/crac-2.5.2+dfsg/test_f/splices_adjust' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/splices_adjust' make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f/splices_adjust' make[3]: Entering directory '/<>/crac-2.5.2+dfsg/test_f' make[4]: Entering directory '/<>/crac-2.5.2+dfsg/test_f' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f' make[3]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f' make[2]: Leaving directory '/<>/crac-2.5.2+dfsg/test_f' make[2]: Entering directory '/<>/crac-2.5.2+dfsg' make[3]: Entering directory '/<>/crac-2.5.2+dfsg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/<>/crac-2.5.2+dfsg' make[2]: Leaving directory '/<>/crac-2.5.2+dfsg' make[1]: Leaving directory '/<>/crac-2.5.2+dfsg' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/<>/crac-2.5.2+dfsg' mkdir debian/crac/usr/share/doc/crac/examples rsync -a --exclude=Makefile* test_f debian/crac/usr/share/doc/crac/examples sed -i 's+${abs_top_builddir:-\.\./\.\.}/src/crac+crac+' `grep -wRl crac debian/crac/usr/share/doc/crac/examples/*` sed -i 's+$abs_top_builddir/src/crac-index+crac-index+' `grep -wRl crac-index debian/crac/usr/share/doc/crac/examples/*` make[1]: Leaving directory '/<>/crac-2.5.2+dfsg' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing crac (in debian/crac); do_strip: , oemstrip: pkgstriptranslations: processing crac-dbgsym (in debian/.debhelper/crac/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/crac/DEBIAN/control, package crac, directory debian/crac pkgstripfiles: Running PNG optimization (using 4 cpus) for package crac ... pkgstripfiles: No PNG files. dpkg-deb: building package 'crac' in '../crac_2.5.2+dfsg-2_ppc64el.deb'. pkgstripfiles: processing control file: debian/.debhelper/crac/dbgsym-root/DEBIAN/control, package crac-dbgsym, directory debian/.debhelper/crac/dbgsym-root dpkg-deb: building package 'crac-dbgsym' in 'debian/.debhelper/scratch-space/build-crac/crac-dbgsym_2.5.2+dfsg-2_ppc64el.deb'. Renaming crac-dbgsym_2.5.2+dfsg-2_ppc64el.deb to crac-dbgsym_2.5.2+dfsg-2_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../crac_2.5.2+dfsg-2_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190727-0516 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ crac_2.5.2+dfsg-2_ppc64el.changes: ---------------------------------- Format: 1.8 Date: Fri, 26 Jul 2019 22:40:52 +0200 Source: crac Binary: crac Architecture: ppc64el Version: 2.5.2+dfsg-2 Distribution: eoan-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: crac - integrated RNA-Seq read analysis Closes: 933024 Changes: crac (2.5.2+dfsg-2) unstable; urgency=medium . [ Helmut Grohne ] * Do not use pkg-config in Makefile.am to enable cross building Closes: #933024 . [ Andreas Tille ] * debhelper-compat 12 Checksums-Sha1: dd7dbf27ba8af4495608e024e42ea02eb91d9132 1947420 crac-dbgsym_2.5.2+dfsg-2_ppc64el.ddeb 77af896e7be2c688715bd58116a935064ed83f15 6609 crac_2.5.2+dfsg-2_ppc64el.buildinfo 9e580ab0b227c2745ecd5d53cca586a12563cdfb 984460 crac_2.5.2+dfsg-2_ppc64el.deb Checksums-Sha256: dff070a93c50f1f42fbd9d7833ca75f52c9c476907d38ba4c71f83add40b97b6 1947420 crac-dbgsym_2.5.2+dfsg-2_ppc64el.ddeb b5759e7c0a87d418c3916b1c9189937bdb03df75b9a35324f5e0a442182cf810 6609 crac_2.5.2+dfsg-2_ppc64el.buildinfo 7ca8e754917ab5731a17df2c247b03ef38dfea9b6a78a38513e098abbbbca6c7 984460 crac_2.5.2+dfsg-2_ppc64el.deb Files: 8067ee5418dd961833334f900e936561 1947420 debug optional crac-dbgsym_2.5.2+dfsg-2_ppc64el.ddeb e11d215ccb1727db35c76c1a551755f4 6609 science optional crac_2.5.2+dfsg-2_ppc64el.buildinfo a685d3bcce25e1efd6c97a7462964c14 984460 science optional crac_2.5.2+dfsg-2_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ crac_2.5.2+dfsg-2_ppc64el.deb ----------------------------- new debian package, version 2.0. size 984460 bytes: control archive=6580 bytes. 1548 bytes, 26 lines control 22351 bytes, 248 lines md5sums Package: crac Version: 2.5.2+dfsg-2 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 3949 Depends: libc6 (>= 2.29), libgcc1 (>= 1:3.0), libgkarrays1, libgzstream0 (>= 1.5+dfsg), libhts2 (>= 1.0), libjellyfish-2.0-2, libstdc++6 (>= 9), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: http://crac.gforge.inria.fr/ Description: integrated RNA-Seq read analysis CRAC is a tool to analyze High Throughput Sequencing (HTS) data in comparison to a reference genome. It is intended for transcriptomic and genomic sequencing reads. More precisely, with transcriptomic reads as input, it predicts point mutations, indels, splice junction, and chimeric RNAs (ie, non colinear splice junctions). CRAC can also output positions and nature of sequence error that it detects in the reads. CRAC uses a genome index. This index must be computed before running the read analysis. For this sake, use the command "crac-index" on your genome files. You can then process the reads using the command crac. See the man page of CRAC (help file) by typing "man crac". CRAC requires large amount of main memory on your computer. For processing against the Human genome, say 50 million reads of 100 nucleotide each, CRAC requires about 40 gigabytes of main memory. Check whether the system of your computing server is equipped with sufficient amount of memory before launching an analysis. drwxr-xr-x root/root 0 2019-07-26 20:40 ./ drwxr-xr-x root/root 0 2019-07-26 20:40 ./usr/ drwxr-xr-x root/root 0 2019-07-26 20:40 ./usr/bin/ -rwxr-xr-x root/root 660488 2019-07-26 20:40 ./usr/bin/crac -rwxr-xr-x root/root 11120 2019-07-26 20:40 ./usr/bin/crac-client -rwxr-xr-x root/root 267312 2019-07-26 20:40 ./usr/bin/crac-index drwxr-xr-x root/root 0 2019-07-26 20:40 ./usr/include/ drwxr-xr-x root/root 0 2019-07-26 20:40 ./usr/include/crac-2.5.2/ drwxr-xr-x root/root 0 2019-07-26 20:40 ./usr/include/crac-2.5.2/kseq/ -rw-r--r-- root/root 12765 2019-07-26 20:40 ./usr/include/crac-2.5.2/kseq/kseq.h drwxr-xr-x root/root 0 2019-07-26 20:40 ./usr/share/ drwxr-xr-x root/root 0 2019-07-26 20:40 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-07-26 20:40 ./usr/share/doc/crac/ -rw-r--r-- root/root 2004 2015-07-13 14:37 ./usr/share/doc/crac/README.gz -rw-r--r-- root/root 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+------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 61536 Build-Time: 47 Distribution: eoan-proposed Host Architecture: ppc64el Install-Time: 15 Job: crac_2.5.2+dfsg-2.dsc Machine Architecture: ppc64el Package: crac Package-Time: 63 Source-Version: 2.5.2+dfsg-2 Space: 61536 Status: successful Version: 2.5.2+dfsg-2 -------------------------------------------------------------------------------- Finished at 20190727-0516 Build needed 00:01:03, 61536k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-17324699 Scanning for processes to kill in build PACKAGEBUILD-17324699