I can confirm that disabling Compiz does allow one to click on objects with in flash and everything works fine with out Compiz on, when I do turn it back on I'm back to where I started with no interactivity with flash.
I can confirm that disabling Compiz does allow one to click on objects with in flash and everything works fine with out Compiz on, when I do turn it back on I'm back to where I started with no interactivity with flash.