https://launchpad.net/ubuntu/+source/clustalx/2.1+lgpl-8/+build/16664673 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-010 4.4.0-145-generic #171-Ubuntu SMP Tue Mar 26 12:43:49 UTC 2019 ppc64le Buildd toolchain package versions: launchpad-buildd_169 python-lpbuildd_169 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 21 Apr 16:20:03 ntpdate[1861]: adjust time server 10.211.37.1 offset -0.003202 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-16664673 --image-type chroot /home/buildd/filecache-default/8ecade3ba39252410f2285d8b2f76e6336361d85 Creating target for build PACKAGEBUILD-16664673 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-16664673 Starting target for build PACKAGEBUILD-16664673 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-16664673 'deb http://ftpmaster.internal/ubuntu eoan main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu eoan-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu eoan-updates main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu eoan-proposed main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-16664673 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-16664673 Updating target for build PACKAGEBUILD-16664673 Get:1 http://ftpmaster.internal/ubuntu eoan InRelease [215 kB] Get:2 http://ftpmaster.internal/ubuntu eoan-security InRelease [66.2 kB] Get:3 http://ftpmaster.internal/ubuntu eoan-updates InRelease [66.2 kB] Get:4 http://ftpmaster.internal/ubuntu eoan-proposed InRelease [66.2 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main ppc64el Packages [953 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main Translation-en [509 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/restricted ppc64el Packages [960 B] Get:8 http://ftpmaster.internal/ubuntu eoan/restricted Translation-en [4960 B] Get:9 http://ftpmaster.internal/ubuntu eoan/universe ppc64el Packages [8798 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/universe Translation-en [5250 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/multiverse ppc64el Packages [128 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/multiverse Translation-en [112 kB] Get:13 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el Packages [29.5 kB] Get:14 http://ftpmaster.internal/ubuntu eoan-proposed/main Translation-en [18.1 kB] Get:15 http://ftpmaster.internal/ubuntu eoan-proposed/universe ppc64el Packages [232 kB] Get:16 http://ftpmaster.internal/ubuntu eoan-proposed/universe Translation-en [218 kB] Get:17 http://ftpmaster.internal/ubuntu eoan-proposed/multiverse ppc64el Packages [1016 B] Get:18 http://ftpmaster.internal/ubuntu eoan-proposed/multiverse Translation-en [7292 B] Fetched 16.7 MB in 4s (4251 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libreadline7 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: gcc-9-base libreadline8 The following packages will be upgraded: adduser advancecomp apt base-files base-passwd bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils build-essential ca-certificates coreutils cpp cpp-8 dash debconf debianutils diffutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++ g++-8 gcc gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libacl1 libapparmor1 libapt-pkg5.0 libargon2-1 libasan5 libassuan0 libatomic1 libattr1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdebconfclient0 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev libgcc1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libhogweed4 libidn11 libitm1 libjson-c3 libkmod2 liblsan0 liblz4-1 liblzma5 libmount1 libmpfr6 libncurses6 libncursesw6 libnettle6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.28 libpng16-16 libprocps7 libquadmath0 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-8-dev libstdc++6 libsystemd0 libtinfo6 libtsan0 libubsan1 libudev1 libunistring2 libuuid1 libzstd1 linux-libc-dev login lsb-base mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.28 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux xz-utils zlib1g 134 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 80.3 MB of archives. After this operation, 10.1 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu eoan/main ppc64el libc6-dev ppc64el 2.29-0ubuntu2 [2579 kB] Get:2 http://ftpmaster.internal/ubuntu eoan/main ppc64el libc-dev-bin ppc64el 2.29-0ubuntu2 [73.0 kB] Get:3 http://ftpmaster.internal/ubuntu eoan/main ppc64el linux-libc-dev ppc64el 5.0.0-13.14 [1045 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main ppc64el libc6 ppc64el 2.29-0ubuntu2 [2719 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main ppc64el libc-bin ppc64el 2.29-0ubuntu2 [632 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main ppc64el gcc-9-base ppc64el 9-20190420-1ubuntu1 [16.9 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgcc1 ppc64el 1:9-20190420-1ubuntu1 [29.8 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/main ppc64el base-files ppc64el 10.1ubuntu10 [60.4 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main ppc64el debianutils ppc64el 4.8.6.1 [86.4 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/main ppc64el bash ppc64el 5.0-3ubuntu1 [723 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main ppc64el bsdutils ppc64el 1:2.33.1-0.1ubuntu2 [69.4 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/main ppc64el coreutils ppc64el 8.30-1ubuntu1 [1313 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/main ppc64el lsb-base all 10.2019031300ubuntu1 [12.5 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main ppc64el tar ppc64el 1.30+dfsg-5 [288 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/main ppc64el dpkg ppc64el 1.19.6ubuntu1 [1169 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main ppc64el libperl5.28 ppc64el 5.28.1-6 [3837 kB] Get:17 http://ftpmaster.internal/ubuntu eoan/main ppc64el perl ppc64el 5.28.1-6 [204 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main ppc64el perl-base ppc64el 5.28.1-6 [1514 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main ppc64el perl-modules-5.28 all 5.28.1-6 [2818 kB] Get:20 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg1-0.6 [724 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgdbm6 ppc64el 1.18.1-4 [31.6 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgdbm-compat4 ppc64el 1.18.1-4 [6660 B] Get:23 http://ftpmaster.internal/ubuntu eoan/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-1ubuntu2 [57.9 kB] Get:24 http://ftpmaster.internal/ubuntu eoan/main ppc64el debconf all 1.5.71 [122 kB] Get:25 http://ftpmaster.internal/ubuntu eoan/main ppc64el dash ppc64el 0.5.10.2-4ubuntu1 [101 kB] Get:26 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el diffutils ppc64el 1:3.7-3 [227 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main ppc64el findutils ppc64el 4.6.0+git+20190209-2 [366 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main ppc64el grep ppc64el 3.3-1 [157 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main ppc64el gzip ppc64el 1.9-3 [107 kB] Get:30 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsmartcols1 ppc64el 2.33.1-0.1ubuntu2 [108 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main ppc64el libuuid1 ppc64el 2.33.1-0.1ubuntu2 [22.7 kB] Get:32 http://ftpmaster.internal/ubuntu eoan/main ppc64el libblkid1 ppc64el 2.33.1-0.1ubuntu2 [159 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main ppc64el libfdisk1 ppc64el 2.33.1-0.1ubuntu2 [196 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main ppc64el libmount1 ppc64el 2.33.1-0.1ubuntu2 [173 kB] Get:35 http://ftpmaster.internal/ubuntu eoan/main ppc64el libncurses6 ppc64el 6.1+20181013-2ubuntu2 [121 kB] Get:36 http://ftpmaster.internal/ubuntu eoan/main ppc64el libtinfo6 ppc64el 6.1+20181013-2ubuntu2 [102 kB] Get:37 http://ftpmaster.internal/ubuntu eoan/main ppc64el libncursesw6 ppc64el 6.1+20181013-2ubuntu2 [152 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main ppc64el fdisk ppc64el 2.33.1-0.1ubuntu2 [130 kB] Get:39 http://ftpmaster.internal/ubuntu eoan/main ppc64el login ppc64el 1:4.5-1.1ubuntu2 [269 kB] Get:40 http://ftpmaster.internal/ubuntu eoan/main ppc64el util-linux ppc64el 2.33.1-0.1ubuntu2 [1054 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main ppc64el ncurses-bin ppc64el 6.1+20181013-2ubuntu2 [174 kB] Get:42 http://ftpmaster.internal/ubuntu eoan/main ppc64el sed ppc64el 4.7-1 [203 kB] Get:43 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdebconfclient0 ppc64el 0.247ubuntu1 [6480 B] Get:44 http://ftpmaster.internal/ubuntu eoan/main ppc64el base-passwd ppc64el 3.5.46 [51.0 kB] Get:45 http://ftpmaster.internal/ubuntu eoan/main ppc64el init-system-helpers all 1.56+nmu1 [38.2 kB] Get:46 http://ftpmaster.internal/ubuntu eoan/main ppc64el ncurses-base all 6.1+20181013-2ubuntu2 [17.9 kB] Get:47 http://ftpmaster.internal/ubuntu eoan/main ppc64el libnettle6 ppc64el 3.4.1-1 [145 kB] Get:48 http://ftpmaster.internal/ubuntu eoan/main ppc64el libhogweed4 ppc64el 3.4.1-1 [145 kB] Get:49 http://ftpmaster.internal/ubuntu eoan/main ppc64el libp11-kit0 ppc64el 0.23.15-2 [198 kB] Get:50 http://ftpmaster.internal/ubuntu eoan/main ppc64el libunistring2 ppc64el 0.9.10-1ubuntu2 [376 kB] Get:51 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgnutls30 ppc64el 3.6.5-2ubuntu1 [758 kB] Get:52 http://ftpmaster.internal/ubuntu eoan/main ppc64el liblz4-1 ppc64el 1.8.3-1ubuntu1 [74.0 kB] Get:53 http://ftpmaster.internal/ubuntu eoan/main ppc64el liblzma5 ppc64el 5.2.4-1 [110 kB] Get:54 http://ftpmaster.internal/ubuntu eoan/main ppc64el libstdc++6 ppc64el 9-20190420-1ubuntu1 [548 kB] Get:55 http://ftpmaster.internal/ubuntu eoan/main ppc64el libudev1 ppc64el 240-6ubuntu5 [78.5 kB] Get:56 http://ftpmaster.internal/ubuntu eoan/main ppc64el libzstd1 ppc64el 1.3.8+dfsg-3 [291 kB] Get:57 http://ftpmaster.internal/ubuntu eoan/main ppc64el libapt-pkg5.0 ppc64el 1.8.0 [904 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpam0g ppc64el 1.3.1-5ubuntu1 [62.7 kB] Get:59 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsemanage-common all 2.8-2 [7016 B] Get:60 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsemanage1 ppc64el 2.8-2 [97.5 kB] Get:61 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpam-modules-bin ppc64el 1.3.1-5ubuntu1 [43.6 kB] Get:62 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpam-modules ppc64el 1.3.1-5ubuntu1 [287 kB] Get:63 http://ftpmaster.internal/ubuntu eoan/main ppc64el passwd ppc64el 1:4.5-1.1ubuntu2 [828 kB] Get:64 http://ftpmaster.internal/ubuntu eoan/main ppc64el adduser all 3.118ubuntu1 [163 kB] Get:65 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgpg-error0 ppc64el 1.35-1 [70.7 kB] Get:66 http://ftpmaster.internal/ubuntu eoan/main ppc64el gpgv ppc64el 2.2.12-1ubuntu3 [237 kB] Get:67 http://ftpmaster.internal/ubuntu eoan/main ppc64el apt ppc64el 1.8.0 [1249 kB] Get:68 http://ftpmaster.internal/ubuntu eoan/main ppc64el systemd-sysv ppc64el 240-6ubuntu5 [9388 B] Get:69 http://ftpmaster.internal/ubuntu eoan/main ppc64el libacl1 ppc64el 2.2.53-4 [20.8 kB] Get:70 http://ftpmaster.internal/ubuntu eoan/main ppc64el libapparmor1 ppc64el 2.13.2-9ubuntu6 [38.9 kB] Get:71 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcap2 ppc64el 1:2.25-2 [14.9 kB] Get:72 http://ftpmaster.internal/ubuntu eoan/main ppc64el libargon2-1 ppc64el 0~20171227-0.2 [21.9 kB] Get:73 http://ftpmaster.internal/ubuntu eoan/main ppc64el libjson-c3 ppc64el 0.12.1+ds-2 [24.8 kB] Get:74 http://ftpmaster.internal/ubuntu eoan/main ppc64el libssl1.1 ppc64el 1.1.1b-1ubuntu2 [1369 kB] Get:75 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcryptsetup12 ppc64el 2:2.1.0-1ubuntu1 [183 kB] Get:76 http://ftpmaster.internal/ubuntu eoan/main ppc64el libidn11 ppc64el 1.33-2.2ubuntu2 [48.8 kB] Get:77 http://ftpmaster.internal/ubuntu eoan/main ppc64el libkmod2 ppc64el 25-1ubuntu4 [50.7 kB] Get:78 http://ftpmaster.internal/ubuntu eoan/main ppc64el mount ppc64el 2.33.1-0.1ubuntu2 [122 kB] Get:79 http://ftpmaster.internal/ubuntu eoan/main ppc64el systemd ppc64el 240-6ubuntu5 [4047 kB] Get:80 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsystemd0 ppc64el 240-6ubuntu5 [302 kB] Get:81 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libext2fs2 ppc64el 1.45.0-1 [227 kB] Get:82 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el e2fsprogs ppc64el 1.45.0-1 [580 kB] Get:83 http://ftpmaster.internal/ubuntu eoan/main ppc64el init ppc64el 1.56+nmu1 [6080 B] Get:84 http://ftpmaster.internal/ubuntu eoan/main ppc64el libattr1 ppc64el 1:2.4.48-4 [13.7 kB] Get:85 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcap-ng0 ppc64el 0.7.9-2 [12.4 kB] Get:86 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpam-runtime all 1.3.1-5ubuntu1 [37.3 kB] Get:87 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpcre3 ppc64el 2:8.39-12 [239 kB] Get:88 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libcom-err2 ppc64el 1.45.0-1 [10.6 kB] Get:89 http://ftpmaster.internal/ubuntu eoan/main ppc64el libprocps7 ppc64el 2:3.3.15-2ubuntu2 [37.0 kB] Get:90 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libss2 ppc64el 1.45.0-1 [12.6 kB] Get:91 http://ftpmaster.internal/ubuntu eoan/main ppc64el procps ppc64el 2:3.3.15-2ubuntu2 [253 kB] Get:92 http://ftpmaster.internal/ubuntu eoan/main ppc64el openssl ppc64el 1.1.1b-1ubuntu2 [628 kB] Get:93 http://ftpmaster.internal/ubuntu eoan/main ppc64el ca-certificates all 20190110 [146 kB] Get:94 http://ftpmaster.internal/ubuntu eoan/main ppc64el readline-common all 8.0-1 [53.4 kB] Get:95 http://ftpmaster.internal/ubuntu eoan/main ppc64el libreadline8 ppc64el 8.0-1 [144 kB] Get:96 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsqlite3-0 ppc64el 3.27.2-2 [568 kB] Get:97 http://ftpmaster.internal/ubuntu eoan/main ppc64el tzdata all 2019a-1 [187 kB] Get:98 http://ftpmaster.internal/ubuntu eoan/main ppc64el xz-utils ppc64el 5.2.4-1 [87.9 kB] Get:99 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpng16-16 ppc64el 1.6.36-6 [209 kB] Get:100 http://ftpmaster.internal/ubuntu eoan/main ppc64el multiarch-support ppc64el 2.29-0ubuntu2 [6916 B] Get:101 http://ftpmaster.internal/ubuntu eoan/main ppc64el advancecomp ppc64el 2.1-2 [250 kB] Get:102 http://ftpmaster.internal/ubuntu eoan/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.32-7ubuntu4 [2058 kB] Get:103 http://ftpmaster.internal/ubuntu eoan/main ppc64el libbinutils ppc64el 2.32-7ubuntu4 [515 kB] Get:104 http://ftpmaster.internal/ubuntu eoan/main ppc64el binutils ppc64el 2.32-7ubuntu4 [3376 B] Get:105 http://ftpmaster.internal/ubuntu eoan/main ppc64el binutils-common ppc64el 2.32-7ubuntu4 [200 kB] Get:106 http://ftpmaster.internal/ubuntu eoan/main ppc64el libubsan1 ppc64el 9-20190420-1ubuntu1 [142 kB] Get:107 http://ftpmaster.internal/ubuntu eoan/main ppc64el libtsan0 ppc64el 9-20190420-1ubuntu1 [309 kB] Get:108 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgomp1 ppc64el 9-20190420-1ubuntu1 [91.7 kB] Get:109 http://ftpmaster.internal/ubuntu eoan/main ppc64el libitm1 ppc64el 9-20190420-1ubuntu1 [29.8 kB] Get:110 http://ftpmaster.internal/ubuntu eoan/main ppc64el libatomic1 ppc64el 9-20190420-1ubuntu1 [10.0 kB] Get:111 http://ftpmaster.internal/ubuntu eoan/main ppc64el libasan5 ppc64el 9-20190420-1ubuntu1 [411 kB] Get:112 http://ftpmaster.internal/ubuntu eoan/main ppc64el liblsan0 ppc64el 9-20190420-1ubuntu1 [150 kB] Get:113 http://ftpmaster.internal/ubuntu eoan/main ppc64el libquadmath0 ppc64el 9-20190420-1ubuntu1 [148 kB] Get:114 http://ftpmaster.internal/ubuntu eoan/main ppc64el g++-8 ppc64el 8.3.0-6ubuntu1 [10.7 MB] Get:115 http://ftpmaster.internal/ubuntu eoan/main ppc64el gcc-8 ppc64el 8.3.0-6ubuntu1 [10.2 MB] Get:116 http://ftpmaster.internal/ubuntu eoan/main ppc64el libstdc++-8-dev ppc64el 8.3.0-6ubuntu1 [1603 kB] Get:117 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgcc-8-dev ppc64el 8.3.0-6ubuntu1 [1208 kB] Get:118 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcc1-0 ppc64el 9-20190420-1ubuntu1 [52.8 kB] Get:119 http://ftpmaster.internal/ubuntu eoan/main ppc64el cpp-8 ppc64el 8.3.0-6ubuntu1 [9359 kB] Get:120 http://ftpmaster.internal/ubuntu eoan/main ppc64el gcc-8-base ppc64el 8.3.0-6ubuntu1 [18.6 kB] Get:121 http://ftpmaster.internal/ubuntu eoan/main ppc64el libmpfr6 ppc64el 4.0.2-1 [263 kB] Get:122 http://ftpmaster.internal/ubuntu eoan/main ppc64el g++ ppc64el 4:8.3.0-1ubuntu3 [1596 B] Get:123 http://ftpmaster.internal/ubuntu eoan/main ppc64el gcc ppc64el 4:8.3.0-1ubuntu3 [5232 B] Get:124 http://ftpmaster.internal/ubuntu eoan/main ppc64el cpp ppc64el 4:8.3.0-1ubuntu3 [27.6 kB] Get:125 http://ftpmaster.internal/ubuntu eoan/main ppc64el dpkg-dev all 1.19.6ubuntu1 [675 kB] Get:126 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdpkg-perl all 1.19.6ubuntu1 [230 kB] Get:127 http://ftpmaster.internal/ubuntu eoan/main ppc64el build-essential ppc64el 12.6ubuntu1 [4664 B] Get:128 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el e2fslibs ppc64el 1.45.0-1 [2704 B] Get:129 http://ftpmaster.internal/ubuntu eoan/main ppc64el libassuan0 ppc64el 2.5.2-1 [38.7 kB] Get:130 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el pinentry-curses ppc64el 1.1.0-2 [40.7 kB] Get:131 http://ftpmaster.internal/ubuntu eoan/main ppc64el gpg ppc64el 2.2.12-1ubuntu3 [540 kB] Get:132 http://ftpmaster.internal/ubuntu eoan/main ppc64el gpgconf ppc64el 2.2.12-1ubuntu3 [147 kB] Get:133 http://ftpmaster.internal/ubuntu eoan/main ppc64el gpg-agent ppc64el 2.2.12-1ubuntu3 [268 kB] Get:134 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libcomerr2 ppc64el 1.45.0-1 [2696 B] Get:135 http://ftpmaster.internal/ubuntu eoan/main ppc64el optipng ppc64el 0.7.7-1 [90.9 kB] Get:136 http://ftpmaster.internal/ubuntu eoan/main ppc64el pkgbinarymangler all 144 [55.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 80.3 MB in 1s (75.7 MB/s) (Reading database ... 12596 files and directories currently installed.) 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Setting up binutils-common:ppc64el (2.32-7ubuntu4) ... Setting up linux-libc-dev:ppc64el (5.0.0-13.14) ... Setting up libcom-err2:ppc64el (1.45.0-1) ... Setting up libassuan0:ppc64el (2.5.2-1) ... Setting up libgomp1:ppc64el (9-20190420-1ubuntu1) ... Setting up tzdata (2019a-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Apr 21 16:20:35 UTC 2019. Universal Time is now: Sun Apr 21 16:20:35 UTC 2019. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasan5:ppc64el (9-20190420-1ubuntu1) ... Setting up multiarch-support (2.29-0ubuntu2) ... Setting up libmpfr6:ppc64el (4.0.2-1) ... Setting up libncurses6:ppc64el (6.1+20181013-2ubuntu2) ... Setting up xz-utils (5.2.4-1) ... Setting up libquadmath0:ppc64el (9-20190420-1ubuntu1) ... Setting up libpng16-16:ppc64el (1.6.36-6) ... Setting up libatomic1:ppc64el (9-20190420-1ubuntu1) ... Setting up libss2:ppc64el (1.45.0-1) ... Setting up gcc-8-base:ppc64el (8.3.0-6ubuntu1) ... Setting up libubsan1:ppc64el (9-20190420-1ubuntu1) ... Setting up advancecomp (2.1-2) ... Setting up libcomerr2:ppc64el (1.45.0-1) ... Setting up procps (2:3.3.15-2ubuntu2) ... Installing new version of config file /etc/sysctl.d/10-network-security.conf ... Setting up libbinutils:ppc64el (2.32-7ubuntu4) ... Setting up cpp-8 (8.3.0-6ubuntu1) ... Setting up libc-dev-bin (2.29-0ubuntu2) ... Setting up openssl (1.1.1b-1ubuntu2) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up readline-common (8.0-1) ... Setting up libcc1-0:ppc64el (9-20190420-1ubuntu1) ... Setting up liblsan0:ppc64el (9-20190420-1ubuntu1) ... Setting up libitm1:ppc64el (9-20190420-1ubuntu1) ... Setting up libgdbm6:ppc64el (1.18.1-4) ... Setting up libtsan0:ppc64el (9-20190420-1ubuntu1) ... Setting up pinentry-curses (1.1.0-2) ... Setting up libreadline8:ppc64el (8.0-1) ... Setting up e2fsprogs (1.45.0-1) ... Installing new version of config file /etc/mke2fs.conf ... Created symlink /etc/systemd/system/timers.target.wants/e2scrub_all.timer -> /lib/systemd/system/e2scrub_all.timer. Created symlink /etc/systemd/system/default.target.wants/e2scrub_reap.service -> /lib/systemd/system/e2scrub_reap.service. Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 2 added, 7 removed; done. Setting up optipng (0.7.7-1) ... Setting up libgdbm-compat4:ppc64el (1.18.1-4) ... Setting up libgcc-8-dev:ppc64el (8.3.0-6ubuntu1) ... Setting up libperl5.28:ppc64el (5.28.1-6) ... Setting up cpp (4:8.3.0-1ubuntu3) ... Setting up gpgconf (2.2.12-1ubuntu3) ... Setting up libc6-dev:ppc64el (2.29-0ubuntu2) ... Setting up binutils-powerpc64le-linux-gnu (2.32-7ubuntu4) ... Setting up gpg (2.2.12-1ubuntu3) ... Setting up libstdc++-8-dev:ppc64el (8.3.0-6ubuntu1) ... Setting up gpg-agent (2.2.12-1ubuntu3) ... Setting up pkgbinarymangler (144) ... Setting up binutils (2.32-7ubuntu4) ... Setting up perl (5.28.1-6) ... Setting up libdpkg-perl (1.19.6ubuntu1) ... Setting up gcc-8 (8.3.0-6ubuntu1) ... Setting up gcc (4:8.3.0-1ubuntu3) ... Setting up dpkg-dev (1.19.6ubuntu1) ... Setting up g++-8 (8.3.0-6ubuntu1) ... Setting up g++ (4:8.3.0-1ubuntu3) ... Setting up build-essential (12.6ubuntu1) ... Processing triggers for systemd (240-6ubuntu5) ... Processing triggers for libc-bin (2.29-0ubuntu2) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-16664673 ppc64el eoan-proposed -c chroot:build-PACKAGEBUILD-16664673 --arch=ppc64el --dist=eoan-proposed --nolog clustalx_2.1+lgpl-8.dsc Initiating build PACKAGEBUILD-16664673 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-145-generic #171-Ubuntu SMP Tue Mar 26 12:43:49 UTC 2019 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-ppc64el-010.buildd +==============================================================================+ | clustalx 2.1+lgpl-8 (ppc64el) 21 Apr 2019 16:20 | +==============================================================================+ Package: clustalx Version: 2.1+lgpl-8 Source Version: 2.1+lgpl-8 Distribution: eoan-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/clustalx-_1okGJ/clustalx-2.1+lgpl' with '<>' I: NOTICE: Log filtering will replace 'build/clustalx-_1okGJ' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16664673/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clustalx_2.1+lgpl-8.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-Ym7lqJ/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-Ym7lqJ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Ym7lqJ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Ym7lqJ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Ym7lqJ/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-Ym7lqJ/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (227 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-Ym7lqJ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12740 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools Filtered Build-Depends: debhelper (>= 11~), qtbase5-dev, qtbase5-dev-tools, qttools5-dev-tools dpkg-deb: building package 'sbuild-build-depends-clustalx-dummy' in '/<>/resolver-AHVJQe/apt_archive/sbuild-build-depends-clustalx-dummy.deb'. Ign:1 copy:/<>/resolver-AHVJQe/apt_archive ./ InRelease Get:2 copy:/<>/resolver-AHVJQe/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-AHVJQe/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-AHVJQe/apt_archive ./ Sources [233 B] Get:5 copy:/<>/resolver-AHVJQe/apt_archive ./ Packages [550 B] Fetched 2902 B in 0s (242 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clustalx build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libcap2-bin libclang1-8 libcroco3 libcups2 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1 libevdev2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles1 libgles2 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgssapi-krb5-2 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libharfbuzz0b libhyphen0 libice6 libicu63 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm8 libmagic-mgc libmagic1 libmtdev1 libopengl0 liborc-0.4-0 libpcre2-16-0 libpipeline1 libpthread-stubs0-dev libqt5concurrent5 libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5help5 libqt5network5 libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5-sqlite libqt5test5 libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5xml5 libsensors-config libsensors5 libsigsegv2 libsm6 libtool libuchardet0 libvulkan-dev libvulkan1 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev po-debconf qdoc-qt5 qt5-assistant qt5-qmake qt5-qmake-bin qtbase5-dev qtbase5-dev-tools qtchooser qttools5-dev-tools ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff isoquery cups-common krb5-doc krb5-user libvisual-0.4-plugins gstreamer1.0-tools libthai0 qt5-image-formats-plugins qtwayland5 qt5-qmltooling-plugins lm-sensors libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc libxcb-doc libxext-doc m4-doc apparmor less www-browser libmail-box-perl qt5-doc default-libmysqlclient-dev firebird-dev libegl1-mesa-dev libpq-dev libsqlite3-dev unixodbc-dev Recommended packages: curl | wget | lynx libpam-cap dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs gstreamer1.0-plugins-base krb5-locales qttranslations5-l10n libqt5svg5 qt5-gtk-platformtheme geoclue-2.0 libltdl-dev libwacom-bin libmail-sendmail-perl libqt5opengl5-dev The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian iso-codes libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbrotli1 libbsd0 libcap2-bin libclang1-8 libcroco3 libcups2 libdbus-1-3 libdouble-conversion1 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libelf1 libevdev2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgl1 libgl1-mesa-dev libgl1-mesa-dri libglapi-mesa libgles1 libgles2 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgraphite2-3 libgssapi-krb5-2 libgstreamer-plugins-base1.0-0 libgstreamer1.0-0 libgudev-1.0-0 libharfbuzz0b libhyphen0 libice6 libicu63 libinput-bin libinput10 libjpeg-turbo8 libjpeg8 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libllvm8 libmagic-mgc libmagic1 libmtdev1 libopengl0 liborc-0.4-0 libpcre2-16-0 libpipeline1 libpthread-stubs0-dev libqt5concurrent5 libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 libqt5gui5 libqt5help5 libqt5network5 libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 libqt5quickwidgets5 libqt5sensors5 libqt5sql5 libqt5sql5-sqlite libqt5test5 libqt5webchannel5 libqt5webkit5 libqt5widgets5 libqt5xml5 libsensors-config libsensors5 libsigsegv2 libsm6 libtool libuchardet0 libvulkan-dev libvulkan1 libwacom-common libwacom2 libwayland-client0 libwayland-server0 libwebp6 libwoff1 libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render-util0 libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxkbcommon-x11-0 libxkbcommon0 libxml2 libxrender1 libxshmfence-dev libxshmfence1 libxslt1.1 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev po-debconf qdoc-qt5 qt5-assistant qt5-qmake qt5-qmake-bin qtbase5-dev qtbase5-dev-tools qtchooser qttools5-dev-tools sbuild-build-depends-clustalx-dummy ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev xkb-data xorg-sgml-doctools xtrans-dev 0 upgraded, 198 newly installed, 0 to remove and 0 not upgraded. Need to get 91.9 MB of archives. After this operation, 570 MB of additional disk space will be used. Get:1 copy:/<>/resolver-AHVJQe/apt_archive ./ sbuild-build-depends-clustalx-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxau6 ppc64el 1:1.0.8-1 [7460 B] Get:3 http://ftpmaster.internal/ubuntu eoan/main ppc64el libbsd0 ppc64el 0.9.1-2 [54.8 kB] Get:4 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxdmcp6 ppc64el 1:1.1.2-3 [11.0 kB] Get:5 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb1 ppc64el 1.13.1-2 [51.1 kB] Get:6 http://ftpmaster.internal/ubuntu eoan/main ppc64el libx11-data all 2:1.6.7-1 [113 kB] Get:7 http://ftpmaster.internal/ubuntu eoan/main ppc64el libx11-6 ppc64el 2:1.6.7-1 [641 kB] Get:8 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxext6 ppc64el 2:1.3.3-1 [30.7 kB] Get:9 http://ftpmaster.internal/ubuntu eoan/main ppc64el bsdmainutils ppc64el 11.1.2ubuntu2 [185 kB] Get:10 http://ftpmaster.internal/ubuntu eoan/main ppc64el libuchardet0 ppc64el 0.0.6-3 [67.7 kB] Get:11 http://ftpmaster.internal/ubuntu eoan/main ppc64el groff-base ppc64el 1.22.4-3 [936 kB] Get:12 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpipeline1 ppc64el 1.5.1-2 [27.7 kB] Get:13 http://ftpmaster.internal/ubuntu eoan/main ppc64el man-db ppc64el 2.8.5-2 [1140 kB] Get:14 http://ftpmaster.internal/ubuntu eoan/main ppc64el libglib2.0-0 ppc64el 2.60.0-1 [1366 kB] Get:15 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcap2-bin ppc64el 1:2.25-2 [23.1 kB] Get:16 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgstreamer1.0-0 ppc64el 1.15.90-1ubuntu1 [891 kB] Get:17 http://ftpmaster.internal/ubuntu eoan/main ppc64el liborc-0.4-0 ppc64el 1:0.4.28-3.1 [169 kB] Get:18 http://ftpmaster.internal/ubuntu eoan/main ppc64el iso-codes all 4.2-1 [2659 kB] Get:19 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgstreamer-plugins-base1.0-0 ppc64el 1.15.90-1 [816 kB] Get:20 http://ftpmaster.internal/ubuntu eoan/main ppc64el libhyphen0 ppc64el 2.8.8-7 [30.4 kB] Get:21 http://ftpmaster.internal/ubuntu eoan/main ppc64el libicu63 ppc64el 63.1-6 [8520 kB] Get:22 http://ftpmaster.internal/ubuntu eoan/main ppc64el libjpeg-turbo8 ppc64el 2.0.1-0ubuntu2 [158 kB] Get:23 http://ftpmaster.internal/ubuntu eoan/main ppc64el libjpeg8 ppc64el 8c-2ubuntu8 [2146 B] Get:24 http://ftpmaster.internal/ubuntu eoan-proposed/universe ppc64el libdouble-conversion1 ppc64el 3.1.0-3 [43.5 kB] Get:25 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpcre2-16-0 ppc64el 10.32-5 [173 kB] Get:26 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5core5a ppc64el 5.12.2+dfsg-4ubuntu1 [2022 kB] Get:27 http://ftpmaster.internal/ubuntu eoan/main ppc64el libexpat1 ppc64el 2.2.6-1 [87.0 kB] Get:28 http://ftpmaster.internal/ubuntu eoan/main ppc64el libfreetype6 ppc64el 2.9.1-3 [416 kB] Get:29 http://ftpmaster.internal/ubuntu eoan/main ppc64el ucf all 3.0038+nmu1 [51.6 kB] Get:30 http://ftpmaster.internal/ubuntu eoan/main ppc64el fonts-dejavu-core all 2.37-1 [1041 kB] Get:31 http://ftpmaster.internal/ubuntu eoan/main ppc64el fontconfig-config all 2.13.1-2ubuntu2 [28.9 kB] Get:32 http://ftpmaster.internal/ubuntu eoan/main ppc64el libfontconfig1 ppc64el 2.13.1-2ubuntu2 [155 kB] Get:33 http://ftpmaster.internal/ubuntu eoan/main ppc64el fontconfig ppc64el 2.13.1-2ubuntu2 [173 kB] Get:34 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdrm-common all 2.4.97-1ubuntu1 [5184 B] Get:35 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdrm2 ppc64el 2.4.97-1ubuntu1 [37.6 kB] Get:36 http://ftpmaster.internal/ubuntu eoan/main ppc64el libglvnd0 ppc64el 1.1.1-0ubuntu1 [49.9 kB] Get:37 http://ftpmaster.internal/ubuntu eoan/main ppc64el libwayland-server0 ppc64el 1.16.0-1ubuntu2 [34.5 kB] Get:38 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgbm1 ppc64el 19.0.2-1ubuntu1 [31.8 kB] Get:39 http://ftpmaster.internal/ubuntu eoan/main ppc64el libglapi-mesa ppc64el 19.0.2-1ubuntu1 [26.2 kB] Get:40 http://ftpmaster.internal/ubuntu eoan/main ppc64el libwayland-client0 ppc64el 1.16.0-1ubuntu2 [27.6 kB] Get:41 http://ftpmaster.internal/ubuntu eoan/main ppc64el libx11-xcb1 ppc64el 2:1.6.7-1 [9436 B] Get:42 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-dri2-0 ppc64el 1.13.1-2 [7288 B] Get:43 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-dri3-0 ppc64el 1.13.1-2 [6956 B] Get:44 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-present0 ppc64el 1.13.1-2 [5828 B] Get:45 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-sync1 ppc64el 1.13.1-2 [9340 B] Get:46 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-xfixes0 ppc64el 1.13.1-2 [9656 B] Get:47 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxshmfence1 ppc64el 1.3-1 [5096 B] Get:48 http://ftpmaster.internal/ubuntu eoan/main ppc64el libegl-mesa0 ppc64el 19.0.2-1ubuntu1 [114 kB] Get:49 http://ftpmaster.internal/ubuntu eoan/main ppc64el libegl1 ppc64el 1.1.1-0ubuntu1 [41.4 kB] Get:50 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-glx0 ppc64el 1.13.1-2 [23.3 kB] Get:51 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxdamage1 ppc64el 1:1.1.4-3 [7056 B] Get:52 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxfixes3 ppc64el 1:5.0.3-1 [10.6 kB] Get:53 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxxf86vm1 ppc64el 1:1.1.4-1 [10.7 kB] Get:54 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdrm-amdgpu1 ppc64el 2.4.97-1ubuntu1 [21.2 kB] Get:55 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdrm-nouveau2 ppc64el 2.4.97-1ubuntu1 [19.2 kB] Get:56 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdrm-radeon1 ppc64el 2.4.97-1ubuntu1 [26.2 kB] Get:57 http://ftpmaster.internal/ubuntu eoan/main ppc64el libelf1 ppc64el 0.176-1 [52.0 kB] Get:58 http://ftpmaster.internal/ubuntu eoan/main ppc64el libedit2 ppc64el 3.1-20181209-1 [109 kB] Get:59 http://ftpmaster.internal/ubuntu eoan/main ppc64el libllvm8 ppc64el 1:8-3 [13.0 MB] Get:60 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsensors-config all 1:3.5.0-3ubuntu1 [6168 B] Get:61 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsensors5 ppc64el 1:3.5.0-3ubuntu1 [32.9 kB] Get:62 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgl1-mesa-dri ppc64el 19.0.2-1ubuntu1 [6842 kB] Get:63 http://ftpmaster.internal/ubuntu eoan/main ppc64el libglx-mesa0 ppc64el 19.0.2-1ubuntu1 [160 kB] Get:64 http://ftpmaster.internal/ubuntu eoan/main ppc64el libglx0 ppc64el 1.1.1-0ubuntu1 [33.3 kB] Get:65 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgl1 ppc64el 1.1.1-0ubuntu1 [95.2 kB] Get:66 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgraphite2-3 ppc64el 1.3.13-7 [72.5 kB] Get:67 http://ftpmaster.internal/ubuntu eoan/main ppc64el libharfbuzz0b ppc64el 2.3.1-1 [403 kB] Get:68 http://ftpmaster.internal/ubuntu eoan/main ppc64el x11-common all 1:7.7+19ubuntu12 [22.4 kB] Get:69 http://ftpmaster.internal/ubuntu eoan/main ppc64el libice6 ppc64el 2:1.0.9-2 [38.0 kB] Get:70 http://ftpmaster.internal/ubuntu eoan/main ppc64el libevdev2 ppc64el 1.6.0+dfsg-1 [31.2 kB] Get:71 http://ftpmaster.internal/ubuntu eoan/main ppc64el libmtdev1 ppc64el 1.1.5-1ubuntu3 [15.8 kB] Get:72 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgudev-1.0-0 ppc64el 1:232-2 [12.3 kB] Get:73 http://ftpmaster.internal/ubuntu eoan/main ppc64el libwacom-common all 0.32-1 [38.5 kB] Get:74 http://ftpmaster.internal/ubuntu eoan/main ppc64el libwacom2 ppc64el 0.32-1 [21.3 kB] Get:75 http://ftpmaster.internal/ubuntu eoan/main ppc64el libinput-bin ppc64el 1.12.6-2 [14.3 kB] Get:76 http://ftpmaster.internal/ubuntu eoan/main ppc64el libinput10 ppc64el 1.12.6-2 [119 kB] Get:77 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdbus-1-3 ppc64el 1.12.12-1ubuntu1 [199 kB] Get:78 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5dbus5 ppc64el 5.12.2+dfsg-4ubuntu1 [216 kB] Get:79 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5network5 ppc64el 5.12.2+dfsg-4ubuntu1 [701 kB] Get:80 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsm6 ppc64el 2:1.2.3-1 [17.6 kB] Get:81 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-icccm4 ppc64el 0.4.1-1.1 [11.2 kB] Get:82 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-shm0 ppc64el 1.13.1-2 [5848 B] Get:83 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-util1 ppc64el 0.4.0-0ubuntu3 [11.0 kB] Get:84 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-image0 ppc64el 0.4.0-1build1 [12.4 kB] Get:85 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-keysyms1 ppc64el 0.4.0-1 [8308 B] Get:86 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-randr0 ppc64el 1.13.1-2 [17.6 kB] Get:87 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-render0 ppc64el 1.13.1-2 [15.6 kB] Get:88 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-render-util0 ppc64el 0.3.9-1 [9720 B] Get:89 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-shape0 ppc64el 1.13.1-2 [6228 B] Get:90 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-xinerama0 ppc64el 1.13.1-2 [5556 B] Get:91 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-xinput0 ppc64el 1.13.1-2 [32.2 kB] Get:92 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-xkb1 ppc64el 1.13.1-2 [31.2 kB] Get:93 http://ftpmaster.internal/ubuntu eoan/main ppc64el xkb-data all 2.23.1-1ubuntu1.18.10.1 [325 kB] Get:94 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxkbcommon0 ppc64el 0.8.2-1 [126 kB] Get:95 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxkbcommon-x11-0 ppc64el 0.8.2-1 [15.0 kB] Get:96 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxrender1 ppc64el 1:0.9.10-1 [17.6 kB] Get:97 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5gui5 ppc64el 5.12.2+dfsg-4ubuntu1 [3119 kB] Get:98 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5positioning5 ppc64el 5.12.2+dfsg-1 [209 kB] Get:99 http://ftpmaster.internal/ubuntu eoan/main ppc64el libavahi-common-data ppc64el 0.7-4ubuntu5 [21.4 kB] Get:100 http://ftpmaster.internal/ubuntu eoan/main ppc64el libavahi-common3 ppc64el 0.7-4ubuntu5 [23.6 kB] Get:101 http://ftpmaster.internal/ubuntu eoan/main ppc64el libavahi-client3 ppc64el 0.7-4ubuntu5 [28.6 kB] Get:102 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libkrb5support0 ppc64el 1.17-2 [37.5 kB] Get:103 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libk5crypto3 ppc64el 1.17-2 [111 kB] Get:104 http://ftpmaster.internal/ubuntu eoan/main ppc64el libkeyutils1 ppc64el 1.6-6 [11.3 kB] Get:105 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libkrb5-3 ppc64el 1.17-2 [383 kB] Get:106 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libgssapi-krb5-2 ppc64el 1.17-2 [137 kB] Get:107 http://ftpmaster.internal/ubuntu eoan-proposed/main ppc64el libcups2 ppc64el 2.2.10-5 [254 kB] Get:108 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5widgets5 ppc64el 5.12.2+dfsg-4ubuntu1 [2366 kB] Get:109 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5printsupport5 ppc64el 5.12.2+dfsg-4ubuntu1 [202 kB] Get:110 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5qml5 ppc64el 5.12.2-2 [1490 kB] Get:111 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5quick5 ppc64el 5.12.2-2 [1471 kB] Get:112 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5sensors5 ppc64el 5.12.2-1 [127 kB] Get:113 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5webchannel5 ppc64el 5.12.2-1 [53.6 kB] Get:114 http://ftpmaster.internal/ubuntu eoan/main ppc64el libwebp6 ppc64el 0.6.1-2 [225 kB] Get:115 http://ftpmaster.internal/ubuntu eoan/main ppc64el libbrotli1 ppc64el 1.0.7-2 [294 kB] Get:116 http://ftpmaster.internal/ubuntu eoan/main ppc64el libwoff1 ppc64el 1.0.2-1build1 [52.3 kB] Get:117 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-7ubuntu3 [666 kB] Get:118 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxslt1.1 ppc64el 1.1.32-2ubuntu0.1 [164 kB] Get:119 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5webkit5 ppc64el 5.212.0~alpha2-22 [11.5 MB] Get:120 http://ftpmaster.internal/ubuntu eoan/main ppc64el libmagic-mgc ppc64el 1:5.35-4 [200 kB] Get:121 http://ftpmaster.internal/ubuntu eoan/main ppc64el libmagic1 ppc64el 1:5.35-4 [91.2 kB] Get:122 http://ftpmaster.internal/ubuntu eoan/main ppc64el file ppc64el 1:5.35-4 [24.2 kB] Get:123 http://ftpmaster.internal/ubuntu eoan/main ppc64el gettext-base ppc64el 0.19.8.1-9 [52.8 kB] Get:124 http://ftpmaster.internal/ubuntu eoan/main ppc64el libsigsegv2 ppc64el 2.12-2 [13.9 kB] Get:125 http://ftpmaster.internal/ubuntu eoan/main ppc64el m4 ppc64el 1.4.18-2 [203 kB] Get:126 http://ftpmaster.internal/ubuntu eoan/main ppc64el autoconf all 2.69-11 [322 kB] Get:127 http://ftpmaster.internal/ubuntu eoan/main ppc64el autotools-dev all 20180224.1 [39.6 kB] Get:128 http://ftpmaster.internal/ubuntu eoan/main ppc64el automake all 1:1.16.1-4ubuntu3 [522 kB] Get:129 http://ftpmaster.internal/ubuntu eoan/main ppc64el autopoint all 0.19.8.1-9 [412 kB] Get:130 http://ftpmaster.internal/ubuntu eoan/main ppc64el libtool all 2.4.6-10 [194 kB] Get:131 http://ftpmaster.internal/ubuntu eoan/main ppc64el dh-autoreconf all 19 [16.1 kB] Get:132 http://ftpmaster.internal/ubuntu eoan/main ppc64el libarchive-zip-perl all 1.64-1 [84.9 kB] Get:133 http://ftpmaster.internal/ubuntu eoan/main ppc64el libfile-stripnondeterminism-perl all 1.1.2-1 [13.7 kB] Get:134 http://ftpmaster.internal/ubuntu eoan/main ppc64el dh-strip-nondeterminism all 1.1.2-1 [5208 B] Get:135 http://ftpmaster.internal/ubuntu eoan/main ppc64el dwz ppc64el 0.12-3 [87.4 kB] Get:136 http://ftpmaster.internal/ubuntu eoan/main ppc64el libcroco3 ppc64el 0.6.12-3 [92.5 kB] Get:137 http://ftpmaster.internal/ubuntu eoan/main ppc64el gettext ppc64el 0.19.8.1-9 [978 kB] Get:138 http://ftpmaster.internal/ubuntu eoan/main ppc64el intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:139 http://ftpmaster.internal/ubuntu eoan/main ppc64el po-debconf all 1.0.21 [233 kB] Get:140 http://ftpmaster.internal/ubuntu eoan/main ppc64el debhelper all 12.1.1ubuntu1 [899 kB] Get:141 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libclang1-8 ppc64el 1:8-3 [6110 kB] Get:142 http://ftpmaster.internal/ubuntu eoan/main ppc64el libdrm-dev ppc64el 2.4.97-1ubuntu1 [118 kB] Get:143 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgles1 ppc64el 1.1.1-0ubuntu1 [14.3 kB] Get:144 http://ftpmaster.internal/ubuntu eoan/main ppc64el libglu1-mesa ppc64el 9.0.0-2.1build1 [225 kB] Get:145 http://ftpmaster.internal/ubuntu eoan/main ppc64el xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:146 http://ftpmaster.internal/ubuntu eoan/main ppc64el x11proto-dev all 2018.4-4 [251 kB] Get:147 http://ftpmaster.internal/ubuntu eoan/main ppc64el x11proto-core-dev all 2018.4-4 [2620 B] Get:148 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxau-dev ppc64el 1:1.0.8-1 [9358 B] Get:149 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxdmcp-dev ppc64el 1:1.1.2-3 [26.1 kB] Get:150 http://ftpmaster.internal/ubuntu eoan/main ppc64el xtrans-dev all 1.3.5-1 [70.5 kB] Get:151 http://ftpmaster.internal/ubuntu eoan/main ppc64el libpthread-stubs0-dev ppc64el 0.4-1 [5388 B] Get:152 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb1-dev ppc64el 1.13.1-2 [88.5 kB] Get:153 http://ftpmaster.internal/ubuntu eoan/main ppc64el libx11-dev ppc64el 2:1.6.7-1 [733 kB] Get:154 http://ftpmaster.internal/ubuntu eoan/main ppc64el mesa-common-dev ppc64el 19.0.2-1ubuntu1 [598 kB] Get:155 http://ftpmaster.internal/ubuntu eoan/main ppc64el libglvnd-core-dev ppc64el 1.1.1-0ubuntu1 [12.6 kB] Get:156 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgles2 ppc64el 1.1.1-0ubuntu1 [20.0 kB] Get:157 http://ftpmaster.internal/ubuntu eoan/main ppc64el libopengl0 ppc64el 1.1.1-0ubuntu1 [34.8 kB] Get:158 http://ftpmaster.internal/ubuntu eoan/main ppc64el libglvnd-dev ppc64el 1.1.1-0ubuntu1 [3404 B] Get:159 http://ftpmaster.internal/ubuntu eoan/main ppc64el libx11-xcb-dev ppc64el 2:1.6.7-1 [9776 B] Get:160 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-dri3-dev ppc64el 1.13.1-2 [7788 B] Get:161 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-render0-dev ppc64el 1.13.1-2 [19.3 kB] Get:162 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-randr0-dev ppc64el 1.13.1-2 [22.0 kB] Get:163 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-shape0-dev ppc64el 1.13.1-2 [7428 B] Get:164 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-xfixes0-dev ppc64el 1.13.1-2 [12.3 kB] Get:165 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-sync-dev ppc64el 1.13.1-2 [11.3 kB] Get:166 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-present-dev ppc64el 1.13.1-2 [7212 B] Get:167 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxshmfence-dev ppc64el 1.3-1 [3704 B] Get:168 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-dri2-0-dev ppc64el 1.13.1-2 [8860 B] Get:169 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxcb-glx0-dev ppc64el 1.13.1-2 [30.0 kB] Get:170 http://ftpmaster.internal/ubuntu eoan/main ppc64el x11proto-fixes-dev all 1:2018.4-4 [2620 B] Get:171 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxfixes-dev ppc64el 1:5.0.3-1 [11.1 kB] Get:172 http://ftpmaster.internal/ubuntu eoan/main ppc64el x11proto-damage-dev all 1:2018.4-4 [2620 B] Get:173 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxdamage-dev ppc64el 1:1.1.4-3 [5984 B] Get:174 http://ftpmaster.internal/ubuntu eoan/main ppc64el x11proto-xext-dev all 2018.4-4 [2620 B] Get:175 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxext-dev ppc64el 2:1.3.3-1 [86.5 kB] Get:176 http://ftpmaster.internal/ubuntu eoan/main ppc64el x11proto-xf86vidmode-dev all 2018.4-4 [2632 B] Get:177 http://ftpmaster.internal/ubuntu eoan/main ppc64el libxxf86vm-dev ppc64el 1:1.1.4-1 [14.0 kB] Get:178 http://ftpmaster.internal/ubuntu eoan/main ppc64el libgl1-mesa-dev ppc64el 19.0.2-1ubuntu1 [6048 B] Get:179 http://ftpmaster.internal/ubuntu eoan/main ppc64el libglu1-mesa-dev ppc64el 9.0.0-2.1build1 [270 kB] Get:180 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5concurrent5 ppc64el 5.12.2+dfsg-4ubuntu1 [34.2 kB] Get:181 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5xml5 ppc64el 5.12.2+dfsg-4ubuntu1 [110 kB] Get:182 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5designer5 ppc64el 5.12.2-1 [2814 kB] Get:183 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5designercomponents5 ppc64el 5.12.2-1 [741 kB] Get:184 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5sql5 ppc64el 5.12.2+dfsg-4ubuntu1 [126 kB] Get:185 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5help5 ppc64el 5.12.2-1 [137 kB] Get:186 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5quickwidgets5 ppc64el 5.12.2-2 [42.4 kB] Get:187 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5sql5-sqlite ppc64el 5.12.2+dfsg-4ubuntu1 [49.4 kB] Get:188 http://ftpmaster.internal/ubuntu eoan/universe ppc64el libqt5test5 ppc64el 5.12.2+dfsg-4ubuntu1 [134 kB] Get:189 http://ftpmaster.internal/ubuntu eoan/main ppc64el libvulkan1 ppc64el 1.1.101.0-2 [110 kB] Get:190 http://ftpmaster.internal/ubuntu eoan/main ppc64el libvulkan-dev ppc64el 1.1.101.0-2 [389 kB] Get:191 http://ftpmaster.internal/ubuntu eoan/universe ppc64el qtchooser ppc64el 66-1 [26.2 kB] Get:192 http://ftpmaster.internal/ubuntu eoan/universe ppc64el qdoc-qt5 ppc64el 5.12.2-1 [508 kB] Get:193 http://ftpmaster.internal/ubuntu eoan/universe ppc64el qt5-assistant ppc64el 5.12.2-1 [767 kB] Get:194 http://ftpmaster.internal/ubuntu eoan/universe ppc64el qt5-qmake-bin ppc64el 5.12.2+dfsg-4ubuntu1 [945 kB] Get:195 http://ftpmaster.internal/ubuntu eoan/universe ppc64el qt5-qmake ppc64el 5.12.2+dfsg-4ubuntu1 [188 kB] Get:196 http://ftpmaster.internal/ubuntu eoan/universe ppc64el qtbase5-dev-tools ppc64el 5.12.2+dfsg-4ubuntu1 [814 kB] Get:197 http://ftpmaster.internal/ubuntu eoan/universe ppc64el qtbase5-dev ppc64el 5.12.2+dfsg-4ubuntu1 [988 kB] Get:198 http://ftpmaster.internal/ubuntu eoan/universe ppc64el qttools5-dev-tools ppc64el 5.12.2-1 [1128 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 91.9 MB in 7s (14.0 MB/s) Selecting previously unselected package libxau6:ppc64el. (Reading database ... 12740 files and directories currently installed.) Preparing to unpack .../000-libxau6_1%3a1.0.8-1_ppc64el.deb ... Unpacking libxau6:ppc64el (1:1.0.8-1) ... Selecting previously unselected package libbsd0:ppc64el. Preparing to unpack .../001-libbsd0_0.9.1-2_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.9.1-2) ... Selecting previously unselected package libxdmcp6:ppc64el. Preparing to unpack .../002-libxdmcp6_1%3a1.1.2-3_ppc64el.deb ... Unpacking libxdmcp6:ppc64el (1:1.1.2-3) ... Selecting previously unselected package libxcb1:ppc64el. Preparing to unpack .../003-libxcb1_1.13.1-2_ppc64el.deb ... Unpacking libxcb1:ppc64el (1.13.1-2) ... Selecting previously unselected package libx11-data. Preparing to unpack .../004-libx11-data_2%3a1.6.7-1_all.deb ... Unpacking libx11-data (2:1.6.7-1) ... Selecting previously unselected package libx11-6:ppc64el. Preparing to unpack .../005-libx11-6_2%3a1.6.7-1_ppc64el.deb ... Unpacking libx11-6:ppc64el (2:1.6.7-1) ... Selecting previously unselected package libxext6:ppc64el. Preparing to unpack .../006-libxext6_2%3a1.3.3-1_ppc64el.deb ... Unpacking libxext6:ppc64el (2:1.3.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../007-bsdmainutils_11.1.2ubuntu2_ppc64el.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../008-libuchardet0_0.0.6-3_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.22.4-3_ppc64el.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../010-libpipeline1_1.5.1-2_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../011-man-db_2.8.5-2_ppc64el.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libglib2.0-0:ppc64el. Preparing to unpack .../012-libglib2.0-0_2.60.0-1_ppc64el.deb ... Unpacking libglib2.0-0:ppc64el (2.60.0-1) ... Selecting previously unselected package libcap2-bin. Preparing to unpack .../013-libcap2-bin_1%3a2.25-2_ppc64el.deb ... Unpacking libcap2-bin (1:2.25-2) ... Selecting previously unselected package libgstreamer1.0-0:ppc64el. Preparing to unpack .../014-libgstreamer1.0-0_1.15.90-1ubuntu1_ppc64el.deb ... Unpacking libgstreamer1.0-0:ppc64el (1.15.90-1ubuntu1) ... Selecting previously unselected package liborc-0.4-0:ppc64el. Preparing to unpack .../015-liborc-0.4-0_1%3a0.4.28-3.1_ppc64el.deb ... Unpacking liborc-0.4-0:ppc64el (1:0.4.28-3.1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../016-iso-codes_4.2-1_all.deb ... Unpacking iso-codes (4.2-1) ... Selecting previously unselected package libgstreamer-plugins-base1.0-0:ppc64el. Preparing to unpack .../017-libgstreamer-plugins-base1.0-0_1.15.90-1_ppc64el.deb ... Unpacking libgstreamer-plugins-base1.0-0:ppc64el (1.15.90-1) ... Selecting previously unselected package libhyphen0:ppc64el. Preparing to unpack .../018-libhyphen0_2.8.8-7_ppc64el.deb ... Unpacking libhyphen0:ppc64el (2.8.8-7) ... Selecting previously unselected package libicu63:ppc64el. Preparing to unpack .../019-libicu63_63.1-6_ppc64el.deb ... Unpacking libicu63:ppc64el (63.1-6) ... Selecting previously unselected package libjpeg-turbo8:ppc64el. Preparing to unpack .../020-libjpeg-turbo8_2.0.1-0ubuntu2_ppc64el.deb ... Unpacking libjpeg-turbo8:ppc64el (2.0.1-0ubuntu2) ... Selecting previously unselected package libjpeg8:ppc64el. Preparing to unpack .../021-libjpeg8_8c-2ubuntu8_ppc64el.deb ... Unpacking libjpeg8:ppc64el (8c-2ubuntu8) ... Selecting previously unselected package libdouble-conversion1:ppc64el. Preparing to unpack .../022-libdouble-conversion1_3.1.0-3_ppc64el.deb ... Unpacking libdouble-conversion1:ppc64el (3.1.0-3) ... Selecting previously unselected package libpcre2-16-0:ppc64el. Preparing to unpack .../023-libpcre2-16-0_10.32-5_ppc64el.deb ... Unpacking libpcre2-16-0:ppc64el (10.32-5) ... Selecting previously unselected package libqt5core5a:ppc64el. Preparing to unpack .../024-libqt5core5a_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking libqt5core5a:ppc64el (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../025-libexpat1_2.2.6-1_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.2.6-1) ... Selecting previously unselected package libfreetype6:ppc64el. Preparing to unpack .../026-libfreetype6_2.9.1-3_ppc64el.deb ... Unpacking libfreetype6:ppc64el (2.9.1-3) ... Selecting previously unselected package ucf. Preparing to unpack .../027-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../028-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../029-fontconfig-config_2.13.1-2ubuntu2_all.deb ... Unpacking fontconfig-config (2.13.1-2ubuntu2) ... Selecting previously unselected package libfontconfig1:ppc64el. Preparing to unpack .../030-libfontconfig1_2.13.1-2ubuntu2_ppc64el.deb ... Unpacking libfontconfig1:ppc64el (2.13.1-2ubuntu2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../031-fontconfig_2.13.1-2ubuntu2_ppc64el.deb ... Unpacking fontconfig (2.13.1-2ubuntu2) ... Selecting previously unselected package libdrm-common. Preparing to unpack .../032-libdrm-common_2.4.97-1ubuntu1_all.deb ... Unpacking libdrm-common (2.4.97-1ubuntu1) ... Selecting previously unselected package libdrm2:ppc64el. Preparing to unpack .../033-libdrm2_2.4.97-1ubuntu1_ppc64el.deb ... Unpacking libdrm2:ppc64el (2.4.97-1ubuntu1) ... Selecting previously unselected package libglvnd0:ppc64el. Preparing to unpack .../034-libglvnd0_1.1.1-0ubuntu1_ppc64el.deb ... Unpacking libglvnd0:ppc64el (1.1.1-0ubuntu1) ... Selecting previously unselected package libwayland-server0:ppc64el. Preparing to unpack .../035-libwayland-server0_1.16.0-1ubuntu2_ppc64el.deb ... Unpacking libwayland-server0:ppc64el (1.16.0-1ubuntu2) ... Selecting previously unselected package libgbm1:ppc64el. Preparing to unpack .../036-libgbm1_19.0.2-1ubuntu1_ppc64el.deb ... Unpacking libgbm1:ppc64el (19.0.2-1ubuntu1) ... Selecting previously unselected package libglapi-mesa:ppc64el. Preparing to unpack .../037-libglapi-mesa_19.0.2-1ubuntu1_ppc64el.deb ... Unpacking libglapi-mesa:ppc64el (19.0.2-1ubuntu1) ... Selecting previously unselected package libwayland-client0:ppc64el. Preparing to unpack .../038-libwayland-client0_1.16.0-1ubuntu2_ppc64el.deb ... Unpacking libwayland-client0:ppc64el (1.16.0-1ubuntu2) ... Selecting previously unselected package libx11-xcb1:ppc64el. Preparing to unpack .../039-libx11-xcb1_2%3a1.6.7-1_ppc64el.deb ... Unpacking libx11-xcb1:ppc64el (2:1.6.7-1) ... Selecting previously unselected package libxcb-dri2-0:ppc64el. Preparing to unpack .../040-libxcb-dri2-0_1.13.1-2_ppc64el.deb ... Unpacking libxcb-dri2-0:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-dri3-0:ppc64el. Preparing to unpack .../041-libxcb-dri3-0_1.13.1-2_ppc64el.deb ... Unpacking libxcb-dri3-0:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-present0:ppc64el. Preparing to unpack .../042-libxcb-present0_1.13.1-2_ppc64el.deb ... Unpacking libxcb-present0:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-sync1:ppc64el. Preparing to unpack .../043-libxcb-sync1_1.13.1-2_ppc64el.deb ... Unpacking libxcb-sync1:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-xfixes0:ppc64el. Preparing to unpack .../044-libxcb-xfixes0_1.13.1-2_ppc64el.deb ... Unpacking libxcb-xfixes0:ppc64el (1.13.1-2) ... Selecting previously unselected package libxshmfence1:ppc64el. Preparing to unpack .../045-libxshmfence1_1.3-1_ppc64el.deb ... Unpacking libxshmfence1:ppc64el (1.3-1) ... Selecting previously unselected package libegl-mesa0:ppc64el. Preparing to unpack .../046-libegl-mesa0_19.0.2-1ubuntu1_ppc64el.deb ... Unpacking libegl-mesa0:ppc64el (19.0.2-1ubuntu1) ... Selecting previously unselected package libegl1:ppc64el. Preparing to unpack .../047-libegl1_1.1.1-0ubuntu1_ppc64el.deb ... Unpacking libegl1:ppc64el (1.1.1-0ubuntu1) ... Selecting previously unselected package libxcb-glx0:ppc64el. Preparing to unpack .../048-libxcb-glx0_1.13.1-2_ppc64el.deb ... Unpacking libxcb-glx0:ppc64el (1.13.1-2) ... Selecting previously unselected package libxdamage1:ppc64el. Preparing to unpack .../049-libxdamage1_1%3a1.1.4-3_ppc64el.deb ... Unpacking libxdamage1:ppc64el (1:1.1.4-3) ... Selecting previously unselected package libxfixes3:ppc64el. Preparing to unpack .../050-libxfixes3_1%3a5.0.3-1_ppc64el.deb ... Unpacking libxfixes3:ppc64el (1:5.0.3-1) ... Selecting previously unselected package libxxf86vm1:ppc64el. Preparing to unpack .../051-libxxf86vm1_1%3a1.1.4-1_ppc64el.deb ... Unpacking libxxf86vm1:ppc64el (1:1.1.4-1) ... Selecting previously unselected package libdrm-amdgpu1:ppc64el. Preparing to unpack .../052-libdrm-amdgpu1_2.4.97-1ubuntu1_ppc64el.deb ... Unpacking libdrm-amdgpu1:ppc64el (2.4.97-1ubuntu1) ... Selecting previously unselected package libdrm-nouveau2:ppc64el. Preparing to unpack .../053-libdrm-nouveau2_2.4.97-1ubuntu1_ppc64el.deb ... Unpacking libdrm-nouveau2:ppc64el (2.4.97-1ubuntu1) ... Selecting previously unselected package libdrm-radeon1:ppc64el. Preparing to unpack .../054-libdrm-radeon1_2.4.97-1ubuntu1_ppc64el.deb ... Unpacking libdrm-radeon1:ppc64el (2.4.97-1ubuntu1) ... Selecting previously unselected package libelf1:ppc64el. Preparing to unpack .../055-libelf1_0.176-1_ppc64el.deb ... Unpacking libelf1:ppc64el (0.176-1) ... Selecting previously unselected package libedit2:ppc64el. Preparing to unpack .../056-libedit2_3.1-20181209-1_ppc64el.deb ... Unpacking libedit2:ppc64el (3.1-20181209-1) ... Selecting previously unselected package libllvm8:ppc64el. Preparing to unpack .../057-libllvm8_1%3a8-3_ppc64el.deb ... Unpacking libllvm8:ppc64el (1:8-3) ... Selecting previously unselected package libsensors-config. Preparing to unpack .../058-libsensors-config_1%3a3.5.0-3ubuntu1_all.deb ... Unpacking libsensors-config (1:3.5.0-3ubuntu1) ... Selecting previously unselected package libsensors5:ppc64el. Preparing to unpack .../059-libsensors5_1%3a3.5.0-3ubuntu1_ppc64el.deb ... Unpacking libsensors5:ppc64el (1:3.5.0-3ubuntu1) ... Selecting previously unselected package libgl1-mesa-dri:ppc64el. Preparing to unpack .../060-libgl1-mesa-dri_19.0.2-1ubuntu1_ppc64el.deb ... Unpacking libgl1-mesa-dri:ppc64el (19.0.2-1ubuntu1) ... Selecting previously unselected package libglx-mesa0:ppc64el. Preparing to unpack .../061-libglx-mesa0_19.0.2-1ubuntu1_ppc64el.deb ... Unpacking libglx-mesa0:ppc64el (19.0.2-1ubuntu1) ... Selecting previously unselected package libglx0:ppc64el. Preparing to unpack .../062-libglx0_1.1.1-0ubuntu1_ppc64el.deb ... Unpacking libglx0:ppc64el (1.1.1-0ubuntu1) ... Selecting previously unselected package libgl1:ppc64el. Preparing to unpack .../063-libgl1_1.1.1-0ubuntu1_ppc64el.deb ... Unpacking libgl1:ppc64el (1.1.1-0ubuntu1) ... Selecting previously unselected package libgraphite2-3:ppc64el. Preparing to unpack .../064-libgraphite2-3_1.3.13-7_ppc64el.deb ... Unpacking libgraphite2-3:ppc64el (1.3.13-7) ... Selecting previously unselected package libharfbuzz0b:ppc64el. Preparing to unpack .../065-libharfbuzz0b_2.3.1-1_ppc64el.deb ... Unpacking libharfbuzz0b:ppc64el (2.3.1-1) ... Selecting previously unselected package x11-common. Preparing to unpack .../066-x11-common_1%3a7.7+19ubuntu12_all.deb ... dpkg-query: no packages found matching nux-tools Unpacking x11-common (1:7.7+19ubuntu12) ... Selecting previously unselected package libice6:ppc64el. Preparing to unpack .../067-libice6_2%3a1.0.9-2_ppc64el.deb ... Unpacking libice6:ppc64el (2:1.0.9-2) ... Selecting previously unselected package libevdev2:ppc64el. Preparing to unpack .../068-libevdev2_1.6.0+dfsg-1_ppc64el.deb ... Unpacking libevdev2:ppc64el (1.6.0+dfsg-1) ... Selecting previously unselected package libmtdev1:ppc64el. Preparing to unpack .../069-libmtdev1_1.1.5-1ubuntu3_ppc64el.deb ... Unpacking libmtdev1:ppc64el (1.1.5-1ubuntu3) ... Selecting previously unselected package libgudev-1.0-0:ppc64el. Preparing to unpack .../070-libgudev-1.0-0_1%3a232-2_ppc64el.deb ... Unpacking libgudev-1.0-0:ppc64el (1:232-2) ... Selecting previously unselected package libwacom-common. Preparing to unpack .../071-libwacom-common_0.32-1_all.deb ... Unpacking libwacom-common (0.32-1) ... Selecting previously unselected package libwacom2:ppc64el. Preparing to unpack .../072-libwacom2_0.32-1_ppc64el.deb ... Unpacking libwacom2:ppc64el (0.32-1) ... Selecting previously unselected package libinput-bin. Preparing to unpack .../073-libinput-bin_1.12.6-2_ppc64el.deb ... Unpacking libinput-bin (1.12.6-2) ... Selecting previously unselected package libinput10:ppc64el. Preparing to unpack .../074-libinput10_1.12.6-2_ppc64el.deb ... Unpacking libinput10:ppc64el (1.12.6-2) ... Selecting previously unselected package libdbus-1-3:ppc64el. Preparing to unpack .../075-libdbus-1-3_1.12.12-1ubuntu1_ppc64el.deb ... Unpacking libdbus-1-3:ppc64el (1.12.12-1ubuntu1) ... Selecting previously unselected package libqt5dbus5:ppc64el. Preparing to unpack .../076-libqt5dbus5_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking libqt5dbus5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package libqt5network5:ppc64el. Preparing to unpack .../077-libqt5network5_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking libqt5network5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package libsm6:ppc64el. Preparing to unpack .../078-libsm6_2%3a1.2.3-1_ppc64el.deb ... Unpacking libsm6:ppc64el (2:1.2.3-1) ... Selecting previously unselected package libxcb-icccm4:ppc64el. Preparing to unpack .../079-libxcb-icccm4_0.4.1-1.1_ppc64el.deb ... Unpacking libxcb-icccm4:ppc64el (0.4.1-1.1) ... Selecting previously unselected package libxcb-shm0:ppc64el. Preparing to unpack .../080-libxcb-shm0_1.13.1-2_ppc64el.deb ... Unpacking libxcb-shm0:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-util1:ppc64el. Preparing to unpack .../081-libxcb-util1_0.4.0-0ubuntu3_ppc64el.deb ... Unpacking libxcb-util1:ppc64el (0.4.0-0ubuntu3) ... Selecting previously unselected package libxcb-image0:ppc64el. Preparing to unpack .../082-libxcb-image0_0.4.0-1build1_ppc64el.deb ... Unpacking libxcb-image0:ppc64el (0.4.0-1build1) ... Selecting previously unselected package libxcb-keysyms1:ppc64el. Preparing to unpack .../083-libxcb-keysyms1_0.4.0-1_ppc64el.deb ... Unpacking libxcb-keysyms1:ppc64el (0.4.0-1) ... Selecting previously unselected package libxcb-randr0:ppc64el. Preparing to unpack .../084-libxcb-randr0_1.13.1-2_ppc64el.deb ... Unpacking libxcb-randr0:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-render0:ppc64el. Preparing to unpack .../085-libxcb-render0_1.13.1-2_ppc64el.deb ... Unpacking libxcb-render0:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-render-util0:ppc64el. Preparing to unpack .../086-libxcb-render-util0_0.3.9-1_ppc64el.deb ... Unpacking libxcb-render-util0:ppc64el (0.3.9-1) ... Selecting previously unselected package libxcb-shape0:ppc64el. Preparing to unpack .../087-libxcb-shape0_1.13.1-2_ppc64el.deb ... Unpacking libxcb-shape0:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-xinerama0:ppc64el. Preparing to unpack .../088-libxcb-xinerama0_1.13.1-2_ppc64el.deb ... Unpacking libxcb-xinerama0:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-xinput0:ppc64el. Preparing to unpack .../089-libxcb-xinput0_1.13.1-2_ppc64el.deb ... Unpacking libxcb-xinput0:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-xkb1:ppc64el. Preparing to unpack .../090-libxcb-xkb1_1.13.1-2_ppc64el.deb ... Unpacking libxcb-xkb1:ppc64el (1.13.1-2) ... Selecting previously unselected package xkb-data. Preparing to unpack .../091-xkb-data_2.23.1-1ubuntu1.18.10.1_all.deb ... Unpacking xkb-data (2.23.1-1ubuntu1.18.10.1) ... Selecting previously unselected package libxkbcommon0:ppc64el. Preparing to unpack .../092-libxkbcommon0_0.8.2-1_ppc64el.deb ... Unpacking libxkbcommon0:ppc64el (0.8.2-1) ... Selecting previously unselected package libxkbcommon-x11-0:ppc64el. 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Preparing to unpack .../098-libavahi-common3_0.7-4ubuntu5_ppc64el.deb ... Unpacking libavahi-common3:ppc64el (0.7-4ubuntu5) ... Selecting previously unselected package libavahi-client3:ppc64el. Preparing to unpack .../099-libavahi-client3_0.7-4ubuntu5_ppc64el.deb ... Unpacking libavahi-client3:ppc64el (0.7-4ubuntu5) ... Selecting previously unselected package libkrb5support0:ppc64el. Preparing to unpack .../100-libkrb5support0_1.17-2_ppc64el.deb ... Unpacking libkrb5support0:ppc64el (1.17-2) ... Selecting previously unselected package libk5crypto3:ppc64el. Preparing to unpack .../101-libk5crypto3_1.17-2_ppc64el.deb ... Unpacking libk5crypto3:ppc64el (1.17-2) ... Selecting previously unselected package libkeyutils1:ppc64el. Preparing to unpack .../102-libkeyutils1_1.6-6_ppc64el.deb ... Unpacking libkeyutils1:ppc64el (1.6-6) ... Selecting previously unselected package libkrb5-3:ppc64el. Preparing to unpack .../103-libkrb5-3_1.17-2_ppc64el.deb ... Unpacking libkrb5-3:ppc64el (1.17-2) ... Selecting previously unselected package libgssapi-krb5-2:ppc64el. Preparing to unpack .../104-libgssapi-krb5-2_1.17-2_ppc64el.deb ... Unpacking libgssapi-krb5-2:ppc64el (1.17-2) ... Selecting previously unselected package libcups2:ppc64el. Preparing to unpack .../105-libcups2_2.2.10-5_ppc64el.deb ... Unpacking libcups2:ppc64el (2.2.10-5) ... Selecting previously unselected package libqt5widgets5:ppc64el. Preparing to unpack .../106-libqt5widgets5_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking libqt5widgets5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package libqt5printsupport5:ppc64el. Preparing to unpack .../107-libqt5printsupport5_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking libqt5printsupport5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package libqt5qml5:ppc64el. Preparing to unpack .../108-libqt5qml5_5.12.2-2_ppc64el.deb ... Unpacking libqt5qml5:ppc64el (5.12.2-2) ... Selecting previously unselected package libqt5quick5:ppc64el. Preparing to unpack .../109-libqt5quick5_5.12.2-2_ppc64el.deb ... Unpacking libqt5quick5:ppc64el (5.12.2-2) ... Selecting previously unselected package libqt5sensors5:ppc64el. Preparing to unpack .../110-libqt5sensors5_5.12.2-1_ppc64el.deb ... Unpacking libqt5sensors5:ppc64el (5.12.2-1) ... Selecting previously unselected package libqt5webchannel5:ppc64el. Preparing to unpack .../111-libqt5webchannel5_5.12.2-1_ppc64el.deb ... Unpacking libqt5webchannel5:ppc64el (5.12.2-1) ... Selecting previously unselected package libwebp6:ppc64el. Preparing to unpack .../112-libwebp6_0.6.1-2_ppc64el.deb ... Unpacking libwebp6:ppc64el (0.6.1-2) ... Selecting previously unselected package libbrotli1:ppc64el. Preparing to unpack .../113-libbrotli1_1.0.7-2_ppc64el.deb ... Unpacking libbrotli1:ppc64el (1.0.7-2) ... Selecting previously unselected package libwoff1:ppc64el. Preparing to unpack .../114-libwoff1_1.0.2-1build1_ppc64el.deb ... Unpacking libwoff1:ppc64el (1.0.2-1build1) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../115-libxml2_2.9.4+dfsg1-7ubuntu3_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.4+dfsg1-7ubuntu3) ... Selecting previously unselected package libxslt1.1:ppc64el. Preparing to unpack .../116-libxslt1.1_1.1.32-2ubuntu0.1_ppc64el.deb ... Unpacking libxslt1.1:ppc64el (1.1.32-2ubuntu0.1) ... Selecting previously unselected package libqt5webkit5:ppc64el. Preparing to unpack .../117-libqt5webkit5_5.212.0~alpha2-22_ppc64el.deb ... Unpacking libqt5webkit5:ppc64el (5.212.0~alpha2-22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../118-libmagic-mgc_1%3a5.35-4_ppc64el.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../119-libmagic1_1%3a5.35-4_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../120-file_1%3a5.35-4_ppc64el.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../121-gettext-base_0.19.8.1-9_ppc64el.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:ppc64el. Preparing to unpack .../122-libsigsegv2_2.12-2_ppc64el.deb ... Unpacking libsigsegv2:ppc64el (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../123-m4_1.4.18-2_ppc64el.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../124-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../125-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../126-automake_1%3a1.16.1-4ubuntu3_all.deb ... Unpacking automake (1:1.16.1-4ubuntu3) ... 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Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package dwz. Preparing to unpack .../133-dwz_0.12-3_ppc64el.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libcroco3:ppc64el. Preparing to unpack .../134-libcroco3_0.6.12-3_ppc64el.deb ... Unpacking libcroco3:ppc64el (0.6.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../135-gettext_0.19.8.1-9_ppc64el.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../136-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../137-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../138-debhelper_12.1.1ubuntu1_all.deb ... Unpacking debhelper (12.1.1ubuntu1) ... Selecting previously unselected package libclang1-8. Preparing to unpack .../139-libclang1-8_1%3a8-3_ppc64el.deb ... Unpacking libclang1-8 (1:8-3) ... Selecting previously unselected package libdrm-dev:ppc64el. Preparing to unpack .../140-libdrm-dev_2.4.97-1ubuntu1_ppc64el.deb ... Unpacking libdrm-dev:ppc64el (2.4.97-1ubuntu1) ... Selecting previously unselected package libgles1:ppc64el. Preparing to unpack .../141-libgles1_1.1.1-0ubuntu1_ppc64el.deb ... Unpacking libgles1:ppc64el (1.1.1-0ubuntu1) ... Selecting previously unselected package libglu1-mesa:ppc64el. Preparing to unpack .../142-libglu1-mesa_9.0.0-2.1build1_ppc64el.deb ... Unpacking libglu1-mesa:ppc64el (9.0.0-2.1build1) ... Selecting previously unselected package xorg-sgml-doctools. Preparing to unpack .../143-xorg-sgml-doctools_1%3a1.11-1_all.deb ... Unpacking xorg-sgml-doctools (1:1.11-1) ... Selecting previously unselected package x11proto-dev. Preparing to unpack .../144-x11proto-dev_2018.4-4_all.deb ... Unpacking x11proto-dev (2018.4-4) ... Selecting previously unselected package x11proto-core-dev. Preparing to unpack .../145-x11proto-core-dev_2018.4-4_all.deb ... Unpacking x11proto-core-dev (2018.4-4) ... Selecting previously unselected package libxau-dev:ppc64el. Preparing to unpack .../146-libxau-dev_1%3a1.0.8-1_ppc64el.deb ... Unpacking libxau-dev:ppc64el (1:1.0.8-1) ... Selecting previously unselected package libxdmcp-dev:ppc64el. Preparing to unpack .../147-libxdmcp-dev_1%3a1.1.2-3_ppc64el.deb ... Unpacking libxdmcp-dev:ppc64el (1:1.1.2-3) ... Selecting previously unselected package xtrans-dev. Preparing to unpack .../148-xtrans-dev_1.3.5-1_all.deb ... Unpacking xtrans-dev (1.3.5-1) ... Selecting previously unselected package libpthread-stubs0-dev:ppc64el. Preparing to unpack .../149-libpthread-stubs0-dev_0.4-1_ppc64el.deb ... Unpacking libpthread-stubs0-dev:ppc64el (0.4-1) ... Selecting previously unselected package libxcb1-dev:ppc64el. 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Unpacking libopengl0:ppc64el (1.1.1-0ubuntu1) ... Selecting previously unselected package libglvnd-dev:ppc64el. Preparing to unpack .../156-libglvnd-dev_1.1.1-0ubuntu1_ppc64el.deb ... Unpacking libglvnd-dev:ppc64el (1.1.1-0ubuntu1) ... Selecting previously unselected package libx11-xcb-dev:ppc64el. Preparing to unpack .../157-libx11-xcb-dev_2%3a1.6.7-1_ppc64el.deb ... Unpacking libx11-xcb-dev:ppc64el (2:1.6.7-1) ... Selecting previously unselected package libxcb-dri3-dev:ppc64el. Preparing to unpack .../158-libxcb-dri3-dev_1.13.1-2_ppc64el.deb ... Unpacking libxcb-dri3-dev:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-render0-dev:ppc64el. Preparing to unpack .../159-libxcb-render0-dev_1.13.1-2_ppc64el.deb ... Unpacking libxcb-render0-dev:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-randr0-dev:ppc64el. Preparing to unpack .../160-libxcb-randr0-dev_1.13.1-2_ppc64el.deb ... Unpacking libxcb-randr0-dev:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-shape0-dev:ppc64el. Preparing to unpack .../161-libxcb-shape0-dev_1.13.1-2_ppc64el.deb ... Unpacking libxcb-shape0-dev:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-xfixes0-dev:ppc64el. Preparing to unpack .../162-libxcb-xfixes0-dev_1.13.1-2_ppc64el.deb ... Unpacking libxcb-xfixes0-dev:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-sync-dev:ppc64el. Preparing to unpack .../163-libxcb-sync-dev_1.13.1-2_ppc64el.deb ... Unpacking libxcb-sync-dev:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-present-dev:ppc64el. Preparing to unpack .../164-libxcb-present-dev_1.13.1-2_ppc64el.deb ... Unpacking libxcb-present-dev:ppc64el (1.13.1-2) ... Selecting previously unselected package libxshmfence-dev:ppc64el. Preparing to unpack .../165-libxshmfence-dev_1.3-1_ppc64el.deb ... Unpacking libxshmfence-dev:ppc64el (1.3-1) ... Selecting previously unselected package libxcb-dri2-0-dev:ppc64el. Preparing to unpack .../166-libxcb-dri2-0-dev_1.13.1-2_ppc64el.deb ... Unpacking libxcb-dri2-0-dev:ppc64el (1.13.1-2) ... Selecting previously unselected package libxcb-glx0-dev:ppc64el. Preparing to unpack .../167-libxcb-glx0-dev_1.13.1-2_ppc64el.deb ... Unpacking libxcb-glx0-dev:ppc64el (1.13.1-2) ... Selecting previously unselected package x11proto-fixes-dev. Preparing to unpack .../168-x11proto-fixes-dev_1%3a2018.4-4_all.deb ... Unpacking x11proto-fixes-dev (1:2018.4-4) ... Selecting previously unselected package libxfixes-dev:ppc64el. Preparing to unpack .../169-libxfixes-dev_1%3a5.0.3-1_ppc64el.deb ... Unpacking libxfixes-dev:ppc64el (1:5.0.3-1) ... Selecting previously unselected package x11proto-damage-dev. Preparing to unpack .../170-x11proto-damage-dev_1%3a2018.4-4_all.deb ... Unpacking x11proto-damage-dev (1:2018.4-4) ... Selecting previously unselected package libxdamage-dev:ppc64el. Preparing to unpack .../171-libxdamage-dev_1%3a1.1.4-3_ppc64el.deb ... Unpacking libxdamage-dev:ppc64el (1:1.1.4-3) ... Selecting previously unselected package x11proto-xext-dev. Preparing to unpack .../172-x11proto-xext-dev_2018.4-4_all.deb ... Unpacking x11proto-xext-dev (2018.4-4) ... Selecting previously unselected package libxext-dev:ppc64el. Preparing to unpack .../173-libxext-dev_2%3a1.3.3-1_ppc64el.deb ... Unpacking libxext-dev:ppc64el (2:1.3.3-1) ... Selecting previously unselected package x11proto-xf86vidmode-dev. Preparing to unpack .../174-x11proto-xf86vidmode-dev_2018.4-4_all.deb ... Unpacking x11proto-xf86vidmode-dev (2018.4-4) ... Selecting previously unselected package libxxf86vm-dev:ppc64el. Preparing to unpack .../175-libxxf86vm-dev_1%3a1.1.4-1_ppc64el.deb ... Unpacking libxxf86vm-dev:ppc64el (1:1.1.4-1) ... Selecting previously unselected package libgl1-mesa-dev:ppc64el. Preparing to unpack .../176-libgl1-mesa-dev_19.0.2-1ubuntu1_ppc64el.deb ... Unpacking libgl1-mesa-dev:ppc64el (19.0.2-1ubuntu1) ... Selecting previously unselected package libglu1-mesa-dev:ppc64el. Preparing to unpack .../177-libglu1-mesa-dev_9.0.0-2.1build1_ppc64el.deb ... Unpacking libglu1-mesa-dev:ppc64el (9.0.0-2.1build1) ... Selecting previously unselected package libqt5concurrent5:ppc64el. Preparing to unpack .../178-libqt5concurrent5_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking libqt5concurrent5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package libqt5xml5:ppc64el. Preparing to unpack .../179-libqt5xml5_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking libqt5xml5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package libqt5designer5:ppc64el. Preparing to unpack .../180-libqt5designer5_5.12.2-1_ppc64el.deb ... Unpacking libqt5designer5:ppc64el (5.12.2-1) ... Selecting previously unselected package libqt5designercomponents5:ppc64el. Preparing to unpack .../181-libqt5designercomponents5_5.12.2-1_ppc64el.deb ... Unpacking libqt5designercomponents5:ppc64el (5.12.2-1) ... Selecting previously unselected package libqt5sql5:ppc64el. Preparing to unpack .../182-libqt5sql5_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking libqt5sql5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package libqt5help5:ppc64el. Preparing to unpack .../183-libqt5help5_5.12.2-1_ppc64el.deb ... Unpacking libqt5help5:ppc64el (5.12.2-1) ... Selecting previously unselected package libqt5quickwidgets5:ppc64el. Preparing to unpack .../184-libqt5quickwidgets5_5.12.2-2_ppc64el.deb ... Unpacking libqt5quickwidgets5:ppc64el (5.12.2-2) ... Selecting previously unselected package libqt5sql5-sqlite:ppc64el. Preparing to unpack .../185-libqt5sql5-sqlite_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking libqt5sql5-sqlite:ppc64el (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package libqt5test5:ppc64el. Preparing to unpack .../186-libqt5test5_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking libqt5test5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package libvulkan1:ppc64el. Preparing to unpack .../187-libvulkan1_1.1.101.0-2_ppc64el.deb ... Unpacking libvulkan1:ppc64el (1.1.101.0-2) ... Selecting previously unselected package libvulkan-dev:ppc64el. Preparing to unpack .../188-libvulkan-dev_1.1.101.0-2_ppc64el.deb ... Unpacking libvulkan-dev:ppc64el (1.1.101.0-2) ... Selecting previously unselected package qtchooser. Preparing to unpack .../189-qtchooser_66-1_ppc64el.deb ... Unpacking qtchooser (66-1) ... Selecting previously unselected package qdoc-qt5. Preparing to unpack .../190-qdoc-qt5_5.12.2-1_ppc64el.deb ... Unpacking qdoc-qt5 (5.12.2-1) ... Selecting previously unselected package qt5-assistant. Preparing to unpack .../191-qt5-assistant_5.12.2-1_ppc64el.deb ... Unpacking qt5-assistant (5.12.2-1) ... Selecting previously unselected package qt5-qmake-bin. Preparing to unpack .../192-qt5-qmake-bin_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking qt5-qmake-bin (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package qt5-qmake:ppc64el. Preparing to unpack .../193-qt5-qmake_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking qt5-qmake:ppc64el (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package qtbase5-dev-tools. Preparing to unpack .../194-qtbase5-dev-tools_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking qtbase5-dev-tools (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package qtbase5-dev:ppc64el. Preparing to unpack .../195-qtbase5-dev_5.12.2+dfsg-4ubuntu1_ppc64el.deb ... Unpacking qtbase5-dev:ppc64el (5.12.2+dfsg-4ubuntu1) ... Selecting previously unselected package qttools5-dev-tools. Preparing to unpack .../196-qttools5-dev-tools_5.12.2-1_ppc64el.deb ... Unpacking qttools5-dev-tools (5.12.2-1) ... Selecting previously unselected package sbuild-build-depends-clustalx-dummy. Preparing to unpack .../197-sbuild-build-depends-clustalx-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-clustalx-dummy (0.invalid.0) ... Setting up libexpat1:ppc64el (2.2.6-1) ... Setting up libpipeline1:ppc64el (1.5.1-2) ... Setting up libgraphite2-3:ppc64el (1.3.13-7) ... Setting up libwayland-server0:ppc64el (1.16.0-1ubuntu2) ... Setting up libx11-xcb1:ppc64el (2:1.6.7-1) ... Setting up libxau6:ppc64el (1:1.0.8-1) ... Setting up libkeyutils1:ppc64el (1.6-6) ... Setting up libglvnd-core-dev:ppc64el (1.1.1-0ubuntu1) ... Setting up libhyphen0:ppc64el (2.8.8-7) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:ppc64el (2.60.0-1) ... No schema files found: doing nothing. Setting up libglvnd0:ppc64el (1.1.1-0ubuntu1) ... Setting up libbrotli1:ppc64el (1.0.7-2) ... Setting up x11-common (1:7.7+19ubuntu12) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libsensors-config (1:3.5.0-3ubuntu1) ... Setting up libmagic1:ppc64el (1:5.35-4) ... Setting up gettext-base (0.19.8.1-9) ... Setting up xkb-data (2.23.1-1ubuntu1.18.10.1) ... Setting up file (1:5.35-4) ... Setting up libpthread-stubs0-dev:ppc64el (0.4-1) ... Setting up libpcre2-16-0:ppc64el (10.32-5) ... Setting up libicu63:ppc64el (63.1-6) ... Setting up libopengl0:ppc64el (1.1.1-0ubuntu1) ... Setting up libkrb5support0:ppc64el (1.17-2) ... Setting up libcap2-bin (1:2.25-2) ... Setting up xtrans-dev (1.3.5-1) ... Setting up autotools-dev (20180224.1) ... Setting up libgles2:ppc64el (1.1.1-0ubuntu1) ... Setting up qt5-qmake-bin (5.12.2+dfsg-4ubuntu1) ... Setting up libfreetype6:ppc64el (2.9.1-3) ... Setting up libx11-data (2:1.6.7-1) ... Setting up libavahi-common-data:ppc64el (0.7-4ubuntu5) ... Setting up libgles1:ppc64el (1.1.1-0ubuntu1) ... Setting up libdbus-1-3:ppc64el (1.12.12-1ubuntu1) ... Setting up libsigsegv2:ppc64el (2.12-2) ... Setting up liborc-0.4-0:ppc64el (1:0.4.28-3.1) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:ppc64el (0.6.1-2) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libsensors5:ppc64el (1:3.5.0-3ubuntu1) ... Setting up libk5crypto3:ppc64el (1.17-2) ... Setting up libjpeg-turbo8:ppc64el (2.0.1-0ubuntu2) ... Setting up libglapi-mesa:ppc64el (19.0.2-1ubuntu1) ... Setting up libmtdev1:ppc64el (1.1.5-1ubuntu3) ... Setting up libvulkan1:ppc64el (1.1.101.0-2) ... Setting up libxshmfence1:ppc64el (1.3-1) ... Setting up libuchardet0:ppc64el (0.0.6-3) ... Setting up libharfbuzz0b:ppc64el (2.3.1-1) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libkrb5-3:ppc64el (1.17-2) ... Setting up libbsd0:ppc64el (0.9.1-2) ... Setting up libdrm-common (2.4.97-1ubuntu1) ... Setting up libelf1:ppc64el (0.176-1) ... Setting up libevdev2:ppc64el (1.6.0+dfsg-1) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-7ubuntu3) ... Setting up libdouble-conversion1:ppc64el (3.1.0-3) ... Setting up iso-codes (4.2-1) ... Setting up libgudev-1.0-0:ppc64el (1:232-2) ... Setting up qtchooser (66-1) ... Setting up libgstreamer1.0-0:ppc64el (1.15.90-1ubuntu1) ... Setcap worked! gst-ptp-helper is not suid! Setting up libwacom-common (0.32-1) ... Setting up libxkbcommon0:ppc64el (0.8.2-1) ... Setting up libwayland-client0:ppc64el (1.16.0-1ubuntu2) ... Setting up libjpeg8:ppc64el (8c-2ubuntu8) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libice6:ppc64el (2:1.0.9-2) ... Setting up libxdmcp6:ppc64el (1:1.1.2-3) ... Setting up libvulkan-dev:ppc64el (1.1.101.0-2) ... Setting up libxcb1:ppc64el (1.13.1-2) ... Setting up libxcb-xfixes0:ppc64el (1.13.1-2) ... Setting up libxau-dev:ppc64el (1:1.0.8-1) ... Setting up qt5-qmake:ppc64el (5.12.2+dfsg-4ubuntu1) ... Setting up libxcb-xinput0:ppc64el (1.13.1-2) ... Setting up libwoff1:ppc64el (1.0.2-1build1) ... Setting up libtool (2.4.6-10) ... Setting up libxcb-render0:ppc64el (1.13.1-2) ... Setting up libxshmfence-dev:ppc64el (1.3-1) ... Setting up fontconfig-config (2.13.1-2ubuntu2) ... Setting up libxcb-glx0:ppc64el (1.13.1-2) ... Setting up libedit2:ppc64el (3.1-20181209-1) ... Setting up libxcb-keysyms1:ppc64el (0.4.0-1) ... Setting up libxcb-shape0:ppc64el (1.13.1-2) ... Setting up libavahi-common3:ppc64el (0.7-4ubuntu5) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-render-util0:ppc64el (0.3.9-1) ... Setting up libgstreamer-plugins-base1.0-0:ppc64el (1.15.90-1) ... Setting up libxcb-shm0:ppc64el (1.13.1-2) ... Setting up libxcb-icccm4:ppc64el (0.4.1-1.1) ... Setting up libxcb-util1:ppc64el (0.4.0-0ubuntu3) ... Setting up libxcb-xkb1:ppc64el (1.13.1-2) ... Setting up libxcb-image0:ppc64el (0.4.0-1build1) ... Setting up libxcb-present0:ppc64el (1.13.1-2) ... Setting up libxdmcp-dev:ppc64el (1:1.1.2-3) ... Setting up libxcb-xinerama0:ppc64el (1.13.1-2) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up libxcb-sync1:ppc64el (1.13.1-2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libxkbcommon-x11-0:ppc64el (0.8.2-1) ... Setting up libgssapi-krb5-2:ppc64el (1.17-2) ... Setting up libcroco3:ppc64el (0.6.12-3) ... Setting up libqt5core5a:ppc64el (5.12.2+dfsg-4ubuntu1) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:ppc64el (1.13.1-2) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up libdrm2:ppc64el (2.4.97-1ubuntu1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libqt5dbus5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Setting up libxcb-randr0:ppc64el (1.13.1-2) ... Setting up libxslt1.1:ppc64el (1.1.32-2ubuntu0.1) ... Setting up libx11-6:ppc64el (2:1.6.7-1) ... Setting up libfontconfig1:ppc64el (2.13.1-2ubuntu2) ... Setting up libqt5sensors5:ppc64el (5.12.2-1) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libqt5test5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Setting up libwacom2:ppc64el (0.32-1) ... Setting up libsm6:ppc64el (2:1.2.3-1) ... Setting up libqt5concurrent5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Setting up libavahi-client3:ppc64el (0.7-4ubuntu5) ... Setting up libdrm-amdgpu1:ppc64el (2.4.97-1ubuntu1) ... Setting up automake (1:1.16.1-4ubuntu3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libllvm8:ppc64el (1:8-3) ... Setting up libxcb-dri3-0:ppc64el (1.13.1-2) ... Setting up fontconfig (2.13.1-2ubuntu2) ... Regenerating fonts cache... done. Setting up libdrm-nouveau2:ppc64el (2.4.97-1ubuntu1) ... Setting up gettext (0.19.8.1-9) ... Setting up libxdamage1:ppc64el (1:1.1.4-3) ... Setting up libxcb1-dev:ppc64el (1.13.1-2) ... Setting up libxrender1:ppc64el (1:0.9.10-1) ... Setting up libgbm1:ppc64el (19.0.2-1ubuntu1) ... Setting up libdrm-radeon1:ppc64el (2.4.97-1ubuntu1) ... Setting up libqt5positioning5:ppc64el (5.12.2+dfsg-1) ... Setting up libgl1-mesa-dri:ppc64el (19.0.2-1ubuntu1) ... Setting up libclang1-8 (1:8-3) ... Setting up libx11-dev:ppc64el (2:1.6.7-1) ... Setting up libxext6:ppc64el (2:1.3.3-1) ... Setting up libxcb-dri3-dev:ppc64el (1.13.1-2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libqt5network5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Setting up libxxf86vm1:ppc64el (1:1.1.4-1) ... Setting up libinput-bin (1.12.6-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libqt5sql5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Setting up qtbase5-dev-tools (5.12.2+dfsg-4ubuntu1) ... Setting up libqt5xml5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Setting up libegl-mesa0:ppc64el (19.0.2-1ubuntu1) ... Setting up libxcb-dri2-0-dev:ppc64el (1.13.1-2) ... Setting up libxfixes3:ppc64el (1:5.0.3-1) ... Setting up libqt5qml5:ppc64el (5.12.2-2) ... Setting up libqt5webchannel5:ppc64el (5.12.2-1) ... Setting up libxcb-render0-dev:ppc64el (1.13.1-2) ... Setting up libxcb-glx0-dev:ppc64el (1.13.1-2) ... Setting up libxcb-shape0-dev:ppc64el (1.13.1-2) ... Setting up libxext-dev:ppc64el (2:1.3.3-1) ... Setting up libcups2:ppc64el (2.2.10-5) ... Setting up libegl1:ppc64el (1.1.1-0ubuntu1) ... Setting up libxcb-sync-dev:ppc64el (1.13.1-2) ... Setting up libxcb-xfixes0-dev:ppc64el (1.13.1-2) ... Setting up libinput10:ppc64el (1.12.6-2) ... Setting up libx11-xcb-dev:ppc64el (2:1.6.7-1) ... Setting up libdrm-dev:ppc64el (2.4.97-1ubuntu1) ... Setting up libglx-mesa0:ppc64el (19.0.2-1ubuntu1) ... Setting up libqt5sql5-sqlite:ppc64el (5.12.2+dfsg-4ubuntu1) ... Setting up libglx0:ppc64el (1.1.1-0ubuntu1) ... Setting up qdoc-qt5 (5.12.2-1) ... Setting up po-debconf (1.0.21) ... Setting up libxxf86vm-dev:ppc64el (1:1.1.4-1) ... Setting up libxfixes-dev:ppc64el (1:5.0.3-1) ... Setting up libgl1:ppc64el (1.1.1-0ubuntu1) ... Setting up libxcb-randr0-dev:ppc64el (1.13.1-2) ... Setting up libxcb-present-dev:ppc64el (1.13.1-2) ... Setting up mesa-common-dev:ppc64el (19.0.2-1ubuntu1) ... Setting up libglu1-mesa:ppc64el (9.0.0-2.1build1) ... Setting up libxdamage-dev:ppc64el (1:1.1.4-3) ... Setting up libqt5gui5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Setting up libglvnd-dev:ppc64el (1.1.1-0ubuntu1) ... Setting up libqt5widgets5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Setting up libqt5help5:ppc64el (5.12.2-1) ... Setting up libqt5printsupport5:ppc64el (5.12.2+dfsg-4ubuntu1) ... Setting up libgl1-mesa-dev:ppc64el (19.0.2-1ubuntu1) ... Setting up libqt5quick5:ppc64el (5.12.2-2) ... Setting up libqt5designer5:ppc64el (5.12.2-1) ... Setting up libqt5webkit5:ppc64el (5.212.0~alpha2-22) ... Setting up libqt5designercomponents5:ppc64el (5.12.2-1) ... Setting up libqt5quickwidgets5:ppc64el (5.12.2-2) ... Setting up libglu1-mesa-dev:ppc64el (9.0.0-2.1build1) ... Setting up qtbase5-dev:ppc64el (5.12.2+dfsg-4ubuntu1) ... Setting up qt5-assistant (5.12.2-1) ... Setting up qttools5-dev-tools (5.12.2-1) ... Setting up dh-autoreconf (19) ... Setting up debhelper (12.1.1ubuntu1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up sbuild-build-depends-clustalx-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.29-0ubuntu2) ... Processing triggers for systemd (240-6ubuntu5) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-145-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.32-7ubuntu4 dpkg-dev_1.19.6ubuntu1 g++-8_8.3.0-6ubuntu1 gcc-8_8.3.0-6ubuntu1 libc6-dev_2.29-0ubuntu2 libstdc++-8-dev_8.3.0-6ubuntu1 libstdc++6_9-20190420-1ubuntu1 linux-libc-dev_5.0.0-13.14 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2 apt_1.8.0 autoconf_2.69-11 automake_1:1.16.1-4ubuntu3 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu10 base-passwd_3.5.46 bash_5.0-3ubuntu1 binutils_2.32-7ubuntu4 binutils-common_2.32-7ubuntu4 binutils-powerpc64le-linux-gnu_2.32-7ubuntu4 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.33.1-0.1ubuntu2 build-essential_12.6ubuntu1 bzip2_1.0.6-9 ca-certificates_20190110 coreutils_8.30-1ubuntu1 cpp_4:8.3.0-1ubuntu3 cpp-8_8.3.0-6ubuntu1 dash_0.5.10.2-4ubuntu1 debconf_1.5.71 debhelper_12.1.1ubuntu1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dmsetup_2:1.02.145-4.1ubuntu4 dpkg_1.19.6ubuntu1 dpkg-dev_1.19.6ubuntu1 dwz_0.12-3 e2fslibs_1.45.0-1 e2fsprogs_1.45.0-1 fakeroot_1.23-1 fdisk_2.33.1-0.1ubuntu2 file_1:5.35-4 findutils_4.6.0+git+20190209-2 fontconfig_2.13.1-2ubuntu2 fontconfig-config_2.13.1-2ubuntu2 fonts-dejavu-core_2.37-1 g++_4:8.3.0-1ubuntu3 g++-8_8.3.0-6ubuntu1 gcc_4:8.3.0-1ubuntu3 gcc-8_8.3.0-6ubuntu1 gcc-8-base_8.3.0-6ubuntu1 gcc-9-base_9-20190420-1ubuntu1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpg_2.2.12-1ubuntu3 gpg-agent_2.2.12-1ubuntu3 gpgconf_2.2.12-1ubuntu3 gpgv_2.2.12-1ubuntu3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init_1.56+nmu1 init-system-helpers_1.56+nmu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.5 iso-codes_4.2-1 libacl1_2.2.53-4 libapparmor1_2.13.2-9ubuntu6 libapt-pkg5.0_1.8.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.2 libasan5_9-20190420-1ubuntu1 libassuan0_2.5.2-1 libatomic1_9-20190420-1ubuntu1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.3-1ubuntu3 libaudit1_1:2.8.3-1ubuntu3 libavahi-client3_0.7-4ubuntu5 libavahi-common-data_0.7-4ubuntu5 libavahi-common3_0.7-4ubuntu5 libbinutils_2.32-7ubuntu4 libblkid1_2.33.1-0.1ubuntu2 libbrotli1_1.0.7-2 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.29-0ubuntu2 libc-dev-bin_2.29-0ubuntu2 libc6_2.29-0ubuntu2 libc6-dev_2.29-0ubuntu2 libcap-ng0_0.7.9-2 libcap2_1:2.25-2 libcap2-bin_1:2.25-2 libcc1-0_9-20190420-1ubuntu1 libclang1-8_1:8-3 libcom-err2_1.45.0-1 libcomerr2_1.45.0-1 libcroco3_0.6.12-3 libcryptsetup12_2:2.1.0-1ubuntu1 libcups2_2.2.10-5 libdb5.3_5.3.28+dfsg1-0.6 libdbus-1-3_1.12.12-1ubuntu1 libdebconfclient0_0.247ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdouble-conversion1_3.1.0-3 libdpkg-perl_1.19.6ubuntu1 libdrm-amdgpu1_2.4.97-1ubuntu1 libdrm-common_2.4.97-1ubuntu1 libdrm-dev_2.4.97-1ubuntu1 libdrm-nouveau2_2.4.97-1ubuntu1 libdrm-radeon1_2.4.97-1ubuntu1 libdrm2_2.4.97-1ubuntu1 libedit2_3.1-20181209-1 libegl-mesa0_19.0.2-1ubuntu1 libegl1_1.1.1-0ubuntu1 libelf1_0.176-1 libevdev2_1.6.0+dfsg-1 libexpat1_2.2.6-1 libext2fs2_1.45.0-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1ubuntu2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.2-1 libfontconfig1_2.13.1-2ubuntu2 libfreetype6_2.9.1-3 libgbm1_19.0.2-1ubuntu1 libgcc-8-dev_8.3.0-6ubuntu1 libgcc1_1:9-20190420-1ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libgl1_1.1.1-0ubuntu1 libgl1-mesa-dev_19.0.2-1ubuntu1 libgl1-mesa-dri_19.0.2-1ubuntu1 libglapi-mesa_19.0.2-1ubuntu1 libgles1_1.1.1-0ubuntu1 libgles2_1.1.1-0ubuntu1 libglib2.0-0_2.60.0-1 libglu1-mesa_9.0.0-2.1build1 libglu1-mesa-dev_9.0.0-2.1build1 libglvnd-core-dev_1.1.1-0ubuntu1 libglvnd-dev_1.1.1-0ubuntu1 libglvnd0_1.1.1-0ubuntu1 libglx-mesa0_19.0.2-1ubuntu1 libglx0_1.1.1-0ubuntu1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2ubuntu1 libgomp1_9-20190420-1ubuntu1 libgpg-error0_1.35-1 libgraphite2-3_1.3.13-7 libgssapi-krb5-2_1.17-2 libgstreamer-plugins-base1.0-0_1.15.90-1 libgstreamer1.0-0_1.15.90-1ubuntu1 libgudev-1.0-0_1:232-2 libharfbuzz0b_2.3.1-1 libhogweed4_3.4.1-1 libhyphen0_2.8.8-7 libice6_2:1.0.9-2 libicu63_63.1-6 libidn11_1.33-2.2ubuntu2 libidn2-0_2.0.5-1 libinput-bin_1.12.6-2 libinput10_1.12.6-2 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libitm1_9-20190420-1ubuntu1 libjpeg-turbo8_2.0.1-0ubuntu2 libjpeg8_8c-2ubuntu8 libjson-c3_0.12.1+ds-2 libk5crypto3_1.17-2 libkeyutils1_1.6-6 libkmod2_25-1ubuntu4 libkrb5-3_1.17-2 libkrb5support0_1.17-2 libllvm8_1:8-3 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_9-20190420-1ubuntu1 liblz4-1_1.8.3-1ubuntu1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1ubuntu2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmtdev1_1.1.5-1ubuntu3 libncurses6_6.1+20181013-2ubuntu2 libncursesw6_6.1+20181013-2ubuntu2 libnettle6_3.4.1-1 libnpth0_1.6-1 libopengl0_1.1.1-0ubuntu1 liborc-0.4-0_1:0.4.28-3.1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5ubuntu1 libpam-modules-bin_1.3.1-5ubuntu1 libpam-runtime_1.3.1-5ubuntu1 libpam0g_1.3.1-5ubuntu1 libpcre2-16-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libpng16-16_1.6.36-6 libprocps7_2:3.3.15-2ubuntu2 libpthread-stubs0-dev_0.4-1 libqt5concurrent5_5.12.2+dfsg-4ubuntu1 libqt5core5a_5.12.2+dfsg-4ubuntu1 libqt5dbus5_5.12.2+dfsg-4ubuntu1 libqt5designer5_5.12.2-1 libqt5designercomponents5_5.12.2-1 libqt5gui5_5.12.2+dfsg-4ubuntu1 libqt5help5_5.12.2-1 libqt5network5_5.12.2+dfsg-4ubuntu1 libqt5positioning5_5.12.2+dfsg-1 libqt5printsupport5_5.12.2+dfsg-4ubuntu1 libqt5qml5_5.12.2-2 libqt5quick5_5.12.2-2 libqt5quickwidgets5_5.12.2-2 libqt5sensors5_5.12.2-1 libqt5sql5_5.12.2+dfsg-4ubuntu1 libqt5sql5-sqlite_5.12.2+dfsg-4ubuntu1 libqt5test5_5.12.2+dfsg-4ubuntu1 libqt5webchannel5_5.12.2-1 libqt5webkit5_5.212.0~alpha2-22 libqt5widgets5_5.12.2+dfsg-4ubuntu1 libqt5xml5_5.12.2+dfsg-4ubuntu1 libquadmath0_9-20190420-1ubuntu1 libreadline7_7.0-5 libreadline8_8.0-1 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsensors-config_1:3.5.0-3ubuntu1 libsensors5_1:3.5.0-3ubuntu1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsm6_2:1.2.3-1 libsmartcols1_2.33.1-0.1ubuntu2 libsqlite3-0_3.27.2-2 libss2_1.45.0-1 libssl1.1_1.1.1b-1ubuntu2 libstdc++-8-dev_8.3.0-6ubuntu1 libstdc++6_9-20190420-1ubuntu1 libsystemd0_240-6ubuntu5 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2ubuntu2 libtool_2.4.6-10 libtsan0_9-20190420-1ubuntu1 libubsan1_9-20190420-1ubuntu1 libuchardet0_0.0.6-3 libudev1_240-6ubuntu5 libunistring2_0.9.10-1ubuntu2 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.33.1-0.1ubuntu2 libvulkan-dev_1.1.101.0-2 libvulkan1_1.1.101.0-2 libwacom-common_0.32-1 libwacom2_0.32-1 libwayland-client0_1.16.0-1ubuntu2 libwayland-server0_1.16.0-1ubuntu2 libwebp6_0.6.1-2 libwoff1_1.0.2-1build1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libx11-dev_2:1.6.7-1 libx11-xcb-dev_2:1.6.7-1 libx11-xcb1_2:1.6.7-1 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb-dri2-0_1.13.1-2 libxcb-dri2-0-dev_1.13.1-2 libxcb-dri3-0_1.13.1-2 libxcb-dri3-dev_1.13.1-2 libxcb-glx0_1.13.1-2 libxcb-glx0-dev_1.13.1-2 libxcb-icccm4_0.4.1-1.1 libxcb-image0_0.4.0-1build1 libxcb-keysyms1_0.4.0-1 libxcb-present-dev_1.13.1-2 libxcb-present0_1.13.1-2 libxcb-randr0_1.13.1-2 libxcb-randr0-dev_1.13.1-2 libxcb-render-util0_0.3.9-1 libxcb-render0_1.13.1-2 libxcb-render0-dev_1.13.1-2 libxcb-shape0_1.13.1-2 libxcb-shape0-dev_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb-sync-dev_1.13.1-2 libxcb-sync1_1.13.1-2 libxcb-util1_0.4.0-0ubuntu3 libxcb-xfixes0_1.13.1-2 libxcb-xfixes0-dev_1.13.1-2 libxcb-xinerama0_1.13.1-2 libxcb-xinput0_1.13.1-2 libxcb-xkb1_1.13.1-2 libxcb1_1.13.1-2 libxcb1-dev_1.13.1-2 libxdamage-dev_1:1.1.4-3 libxdamage1_1:1.1.4-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxfixes-dev_1:5.0.3-1 libxfixes3_1:5.0.3-1 libxkbcommon-x11-0_0.8.2-1 libxkbcommon0_0.8.2-1 libxml2_2.9.4+dfsg1-7ubuntu3 libxrender1_1:0.9.10-1 libxshmfence-dev_1.3-1 libxshmfence1_1.3-1 libxslt1.1_1.1.32-2ubuntu0.1 libxxf86vm-dev_1:1.1.4-1 libxxf86vm1_1:1.1.4-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_5.0.0-13.14 lockfile-progs_0.1.18 login_1:4.5-1.1ubuntu2 lsb-base_10.2019031300ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17ubuntu3 mesa-common-dev_19.0.2-1ubuntu1 mount_2.33.1-0.1ubuntu2 multiarch-support_2.29-0ubuntu2 ncurses-base_6.1+20181013-2ubuntu2 ncurses-bin_6.1+20181013-2ubuntu2 openssl_1.1.1b-1ubuntu2 optipng_0.7.7-1 passwd_1:4.5-1.1ubuntu2 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pinentry-curses_1.1.0-2 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu2 qdoc-qt5_5.12.2-1 qt5-assistant_5.12.2-1 qt5-qmake_5.12.2+dfsg-4ubuntu1 qt5-qmake-bin_5.12.2+dfsg-4ubuntu1 qtbase5-dev_5.12.2+dfsg-4ubuntu1 qtbase5-dev-tools_5.12.2+dfsg-4ubuntu1 qtchooser_66-1 qttools5-dev-tools_5.12.2-1 readline-common_8.0-1 sbuild-build-depends-clustalx-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_240-6ubuntu5 systemd-sysv_240-6ubuntu5 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-5 tzdata_2019a-1 ubuntu-keyring_2018.09.18.1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1ubuntu2 x11-common_1:7.7+19ubuntu12 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xkb-data_2.23.1-1ubuntu1.18.10.1 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Feb 24 19:18:02 2019 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clustalx_2.1+lgpl-8.dsc dpkg-source: info: extracting clustalx in clustalx-2.1+lgpl dpkg-source: info: unpacking clustalx_2.1+lgpl.orig.tar.gz dpkg-source: info: unpacking clustalx_2.1+lgpl-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardcode-accessory-file-locations.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying qt5.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16664673 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16664673 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16664673 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clustalx dpkg-buildpackage: info: source version 2.1+lgpl-8 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean dh_auto_clean debian/rules override_dh_clean make[1]: Entering directory '/<>/clustalx-2.1+lgpl' rm -f moc_* dh_clean make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/clustalx-2.1+lgpl' dh_auto_configure qmake -makefile "QMAKE_CFLAGS_RELEASE=-g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CFLAGS_DEBUG=-g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_RELEASE=-g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_CXXFLAGS_DEBUG=-g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "QMAKE_LFLAGS_RELEASE=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" "QMAKE_LFLAGS_DEBUG=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" QMAKE_STRIP=: PREFIX=/usr Info: creating stash file /<>/clustalx-2.1+lgpl/.qmake.stash # did not found a better way to push hardening flags into Makefile sed -i -e "s:CFLAGS *= .*:& -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:CXXFLAGS *= .*:& -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security:" \ -e "s:LFLAGS *= .*:& -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now:" Makefile make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' dh_auto_build -a make -j4 make[1]: Entering directory '/<>/clustalx-2.1+lgpl' g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentFormatOptions.o AlignmentFormatOptions.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentParameters.o AlignmentParameters.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentViewerWidget.o AlignmentViewerWidget.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentWidget.o AlignmentWidget.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from AlignmentParameters.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ AlignmentParameters.cpp: In member function ‘virtual void AlignmentParameters::showEvent(QShowEvent*)’: AlignmentParameters.cpp:48:49: warning: unused parameter ‘event’ [-Wunused-parameter] void AlignmentParameters::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from AlignmentWidget.cpp:49: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from AlignmentWidget.cpp:49: AlignmentWidget.h: In constructor ‘AlignmentWidget::AlignmentWidget(int, int, QFont*, QWidget*)’: AlignmentWidget.h:170:10: warning: ‘AlignmentWidget::blackAndWhite’ will be initialized after [-Wreorder] bool blackAndWhite; ^~~~~~~~~~~~~ AlignmentWidget.h:161:27: warning: ‘std::vector >* AlignmentWidget::selectedColoredRes’ [-Wreorder] std::vector* selectedColoredRes; ^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:65:1: warning: when initialized here [-Wreorder] AlignmentWidget::AlignmentWidget(int boxwidth, int boxsize, QFont* font, QWidget *parent) ^~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calculatePixMaps()’: AlignmentWidget.cpp:225:35: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] for(unsigned int j = 0; j < lengthLongestSeq; j++) ~~^~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:235:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] if(code >= 0 && code < conservationPixmaps->size()) ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:268:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] if(codeForAA >=0 && codeForAA < lowScoreColoredRes->size()) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:280:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] if(codeForAA >=0 && codeForAA < exceptionalColoredRes->size()) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:291:86: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] if(colMask.getRowSize() > (i - extraRow) && colMask.getColSize() > j) ~~~~~~~~~~~~~~~~~~~~~^~~ AlignmentWidget.cpp:215:9: warning: unused variable ‘codeForSpace’ [-Wunused-variable] int codeForSpace = clustalw::userParameters->resIndex( ^~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generateSecStructurePixmaps()’: AlignmentWidget.cpp:333:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] if(i < secStructPixmaps->size() && i < secStructInfo.size()) ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::drawContents(QPainter*, int, int, int, int)’: AlignmentWidget.cpp:569:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] if(selectedRes >= selectedColoredRes->size()) ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::calcConserveInfo()’: AlignmentWidget.cpp:689:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(int j = 1; j <= strongGroup.size(); j++) ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:693:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(int j = 1; j <= weakGroup.size(); j++) ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:700:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] if((i + _fRes - 1 < (*alignment)[j].size()) && ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:701:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] (i + _fRes - 1 < (*alignment)[_fSeq].size())) ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:725:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(int k = 1; k <= strongGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:737:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(int k = 1; k <= weakGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:760:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(int k = 1; k <= strongGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp:771:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(int k = 1; k <= weakGroup.size(); k++) ~~^~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::makeColorMask(clustalw::Array2D*, ColorParameters*)’: AlignmentWidget.cpp:878:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘QString AlignmentWidget::initConsensus()’: AlignmentWidget.cpp:927:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] if(res + 1 < (*alignment)[currentSeq].size() && (lastSeq >= currentSeq)) ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ AlignmentWidget.cpp: In member function ‘void AlignmentWidget::generatePixMaps()’: AlignmentWidget.cpp:1039:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(int j = 0; j < aminoAcid.size(); j++) ~~^~~~~~~~~~~~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from AlignmentViewerWidget.cpp:66: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from AlignmentViewerWidget.cpp:68: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignmentViewerWidget.cpp:63: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeGapPenaltyData()’: AlignmentViewerWidget.cpp:588:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(i = 0; i < len && i < gapMask->size(); i++) ~~^~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘int AlignmentViewerWidget::makeSecStructData()’: AlignmentViewerWidget.cpp:645:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for (i = 0; i < len && i < _secStructMask->size();i++) ~~^~~~~~~~~~~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp:652:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(i = 0; i < len && i < ssMask.size(); i++) ~~^~~~~~~~~~~~~~~ AlignmentViewerWidget.cpp: In member function ‘virtual void AlignmentViewerWidget::resizeEvent(QResizeEvent*)’: AlignmentViewerWidget.cpp:781:58: warning: unused parameter ‘event’ [-Wunused-parameter] void AlignmentViewerWidget::resizeEvent ( QResizeEvent * event ) ~~~~~~~~~~~~~~~^~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignOutputFileNames.o AlignOutputFileNames.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o BootstrapTreeDialog.o BootstrapTreeDialog.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ColorFileXmlParser.o ColorFileXmlParser.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ColorParameters.o ColorParameters.cpp ColorFileXmlParser.cpp:74:13: warning: multi-line comment [-Wcomment] // tr("colorrules not found in the parameter file, using\ ^ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from AlignOutputFileNames.cpp:26: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from AlignOutputFileNames.cpp:26: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr outFileNames; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from AlignOutputFileNames.cpp:23: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from BootstrapTreeDialog.cpp:18: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from BootstrapTreeDialog.cpp:18: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from BootstrapTreeDialog.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorParameters.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getResidueColor(QChar, QChar)’: ColorParameters.cpp:160:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(i = 0; i < colorPar.size(); i++) ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:174:26: warning: unused variable ‘temp’ [-Wunused-variable] char temp = colorPar[i].consensusConditionList[j].toLatin1(); ^~~~ ColorParameters.cpp:157:10: warning: unused variable ‘showRes’ [-Wunused-variable] char showRes = res.toLatin1(); ^~~~~~~ ColorParameters.cpp:158:10: warning: unused variable ‘showCon’ [-Wunused-variable] char showCon = consensus.toLatin1(); ^~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getResidueColorNum(QChar, QChar)’: ColorParameters.cpp:197:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(i = 0; i < colorPar.size(); i++) ~~^~~~~~~~~~~~~~~~~ ColorParameters.cpp:211:26: warning: unused variable ‘temp’ [-Wunused-variable] char temp = colorPar[i].consensusConditionList[j].toLatin1(); ^~~~ ColorParameters.cpp:194:10: warning: unused variable ‘showRes’ [-Wunused-variable] char showRes = res.toLatin1(); ^~~~~~~ ColorParameters.cpp:195:10: warning: unused variable ‘showCon’ [-Wunused-variable] char showCon = consensus.toLatin1(); ^~~~~~~ ColorParameters.cpp: In member function ‘void ColorParameters::printColorInfo()’: ColorParameters.cpp:229:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(int i = 0; i < colors.size(); i++) ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘int ColorParameters::getIndexOfColor(QColor)’: ColorParameters.cpp:238:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(int i = 0; i < colors.size(); i++) ~~^~~~~~~~~~~~~~~ ColorParameters.cpp: In member function ‘QColor ColorParameters::getColorFromNum(int)’: ColorParameters.cpp:251:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] if(colorNum > 0 && colorNum - 1 < colorPar.size()) ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ColumnScoreParams.o ColumnScoreParams.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o FileDialog.o FileDialog.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from ColorFileXmlParser.cpp:3: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseRGBIndex(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:85:46: warning: unused parameter ‘parentItem’ [-Wunused-parameter] QTreeWidgetItem *parentItem) ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘void ColorFileXmlParser::parseConsensus(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:138:86: warning: unused parameter ‘parentItem’ [-Wunused-parameter] void ColorFileXmlParser::parseConsensus(const QDomElement &element, QTreeWidgetItem *parentItem) ~~~~~~~~~~~~~~~~~^~~~~~~~~~ ColorFileXmlParser.cpp: In member function ‘int ColorFileXmlParser::parseColorRule(const QDomElement&, QTreeWidgetItem*)’: ColorFileXmlParser.cpp:175:85: warning: unused parameter ‘parentItem’ [-Wunused-parameter] int ColorFileXmlParser::parseColorRule(const QDomElement &element, QTreeWidgetItem *parentItem) ~~~~~~~~~~~~~~~~~^~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o HardCodedColorScheme.o HardCodedColorScheme.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o HelpDisplayWidget.o HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from HardCodedColorScheme.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o HistogramWidget.o HistogramWidget.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o KeyController.o KeyController.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from ColumnScoreParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ ColumnScoreParams.cpp: In member function ‘virtual void ColumnScoreParams::showEvent(QShowEvent*)’: ColumnScoreParams.cpp:51:47: warning: unused parameter ‘event’ [-Wunused-parameter] void ColumnScoreParams::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from HelpDisplayWidget.cpp:15: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoringSegParams.o LowScoringSegParams.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o main.o main.cpp HelpDisplayWidget.cpp: In member function ‘std::__cxx11::string* HelpDisplayWidget::loadHelpInformation(char)’: HelpDisplayWidget.cpp:147:29: warning: catching polymorphic type ‘class std::ios_base::failure’ by value [-Wcatch-value=] catch(ifstream::failure e) ^ HelpDisplayWidget.cpp:61:13: warning: variable ‘number’ set but not used [-Wunused-but-set-variable] int i, number, nlines; ^~~~~~ In file included from main.cpp:21: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ HistogramWidget.cpp: In member function ‘void HistogramWidget::drawContents(QPainter*, int, int, int, int)’: HistogramWidget.cpp:180:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] if(column >= 0 && column < arrayOfHeights->size()) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ HistogramWidget.cpp:198:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] if(column >= 0 && column < arrayOfHeights->size()) ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from main.cpp:24: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from main.cpp:24: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/substitutionMatrix/../general/SquareMat.h:9, from clustalW/substitutionMatrix/../general/clustalw.h:43, from clustalW/substitutionMatrix/SubMatrix.h:28, from main.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o mainwindow.o mainwindow.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o PairwiseParams.o PairwiseParams.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o PostscriptFileParams.o PostscriptFileParams.cpp In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from LowScoringSegParams.cpp:22: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ LowScoringSegParams.cpp: In member function ‘virtual void LowScoringSegParams::showEvent(QShowEvent*)’: LowScoringSegParams.cpp:51:49: warning: unused parameter ‘event’ [-Wunused-parameter] void LowScoringSegParams::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from PostscriptFileParams.h:4, from PostscriptFileParams.cpp:1: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ProteinGapParameters.o ProteinGapParameters.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o PSPrinter.o PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from mainwindow.cpp:98: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from mainwindow.cpp:98: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:99: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr params; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:100: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr outFileNames; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:101: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from mainwindow.cpp:102: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from mainwindow.cpp:90: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ mainwindow.cpp: In member function ‘virtual void MainWindow::showEvent(QShowEvent*)’: mainwindow.cpp:198:40: warning: unused parameter ‘event’ [-Wunused-parameter] void MainWindow::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ mainwindow.cpp: In member function ‘void MainWindow::writeViewer1AsPostscript(int)’: mainwindow.cpp:1454:47: warning: unused parameter ‘type’ [-Wunused-parameter] void MainWindow::writeViewer1AsPostscript(int type) ~~~~^~~~ In file included from clustalW/substitutionMatrix/globalmatrix.h:8, from PairwiseParams.cpp:23: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ PairwiseParams.cpp: In member function ‘virtual void PairwiseParams::showEvent(QShowEvent*)’: PairwiseParams.cpp:74:44: warning: unused parameter ‘event’ [-Wunused-parameter] void PairwiseParams::showEvent(QShowEvent* event) ~~~~~~~~~~~~^~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from PSPrinter.cpp:20: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::writePSFile(PostscriptFileParams*)’: PSPrinter.cpp:207:55: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] if(res.isLetter() && resNumber.size() > i - data->firstSeq) ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:307:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] if(res.isLetter() && resNumber.size() > seq) ~~~~~~~~~~~~~~~~~^~~~~ PSPrinter.cpp:421:67: warning: comparison of integer expressions of different signedness: ‘std::vector >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] if(res.isLetter() && resNumber.size() > i) ~~~~~~~~~~~~~~~~~^~~ PSPrinter.cpp:55:9: warning: unused variable ‘err’ [-Wunused-variable] int err; ^~~ PSPrinter.cpp:73:9: warning: unused variable ‘gapPos1’ [-Wunused-variable] int gapPos1 = clustalw::userParameters->getGapPos1(); // Mark: 22-1-2007 new local ^~~~~~~ PSPrinter.cpp:74:9: warning: unused variable ‘gapPos2’ [-Wunused-variable] int gapPos2 = clustalw::userParameters->getGapPos2(); // Mark: 22-1-2007 new local ^~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o QTUtility.o QTUtility.cpp PSPrinter.cpp: In member function ‘void PSPrinter::printHeaderLine(std::ofstream*, int, int, int)’: PSPrinter.cpp:587:32: warning: comparison of integer expressions of different signedness: ‘std::vector::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare] if(data->nameHeader.size() > ix) ~~~~~~~~~~~~~~~~~~~~~~~~^~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printFooterLine(std::ofstream*, int, int)’: PSPrinter.cpp:730:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(i = fr; i <= lr && i < ruler.length(); i++) ~~^~~~~~~~~~~~~~~~ PSPrinter.cpp: In member function ‘void PSPrinter::printQualityCurve(std::ofstream*, int, int, int)’: PSPrinter.cpp:789:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] for(i = fr + 1; i <= lr && i < data->histogram->size(); i++) ~~^~~~~~~~~~~~~~~~~~~~~~~~~ PSPrinter.cpp:781:14: warning: unused variable ‘psY’ [-Wunused-variable] int psX, psY, curveBottom; ^~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Resources.o Resources.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o SaveSeqFile.o SaveSeqFile.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o SearchForString.o SearchForString.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o SecStructOptions.o SecStructOptions.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o SeqNameWidget.o SeqNameWidget.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o TreeFormatOptions.o TreeFormatOptions.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from SaveSeqFile.cpp:23: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from SaveSeqFile.cpp:26: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from SaveSeqFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o TreeOutputFileNames.o TreeOutputFileNames.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o WritePostscriptFile.o WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from SeqNameWidget.cpp:59: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ SeqNameWidget.cpp: In member function ‘virtual void SeqNameWidget::paintEvent(QPaintEvent*)’: SeqNameWidget.cpp:375:11: warning: variable ‘redrawRect’ set but not used [-Wunused-but-set-variable] QRect redrawRect = event->rect(); ^~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Clustal.o clustalW/Clustal.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Help.o clustalW/Help.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from clustalW/Clustal.cpp:27: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from clustalW/Clustal.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.cpp:33: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::align(std::__cxx11::string*, bool)’: clustalW/Clustal.cpp:162:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/Clustal.cpp: In member function ‘void clustalw::Clustal::doAlignUseOldTree(std::__cxx11::string*)’: clustalW/Clustal.cpp:837:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/general/SquareMat.h:9, from clustalW/general/clustalw.h:43, from clustalW/Clustal.h:15, from clustalW/Clustal.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from TreeOutputFileNames.cpp:17: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from TreeOutputFileNames.cpp:17: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from TreeOutputFileNames.cpp:14: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from WritePostscriptFile.cpp:24: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from WritePostscriptFile.cpp:24: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr params; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from WritePostscriptFile.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/c++/8/thread:39, from /usr/include/c++/8/future:39, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/qthread.h:50, from /usr/include/powerpc64le-linux-gnu/qt5/QtCore/QtCore:233, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgetsDepends:3, from /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets/QtWidgets:3, from WritePostscriptFile.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Alignment.o clustalW/alignment/Alignment.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/Alignment.cpp:25: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/Alignment.cpp: In member function ‘bool clustalw::Alignment::keepPortionOfSeqArray(int, int)’: clustalW/alignment/Alignment.cpp:1715:24: warning: variable ‘posToAddTo’ set but not used [-Wunused-but-set-variable] SeqArray::iterator posToAddTo = sectionToRealign.begin(); ^~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentOutput.o clustalW/alignment/AlignmentOutput.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ObjectiveScore.o clustalW/alignment/ObjectiveScore.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/ObjectiveScore.h:15, from clustalW/alignment/ObjectiveScore.cpp:10: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from clustalW/alignment/AlignmentOutput.h:24, from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/AlignmentOutput.cpp:27: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:512:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool AlignmentOutput::openExplicitFile(auto_ptr& outFile, string fileName) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp:535:40: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string AlignmentOutput::openOutputFile(auto_ptr& outFile, string prompt, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/alignment/AlignmentOutput.h:20, from clustalW/alignment/AlignmentOutput.cpp:27: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::fastaOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:673:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gcgOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:868:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::phylipOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1027:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nexusOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1156:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::gdeOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1445:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::nbrfOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:1560:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::clustalOut(clustalw::Alignment*, clustalw::outputRegion)’: clustalW/alignment/AlignmentOutput.cpp:2095:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ clustalW/alignment/AlignmentOutput.cpp:2102:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] catch(exception e) ^ clustalW/alignment/AlignmentOutput.cpp: In member function ‘void clustalw::AlignmentOutput::findRangeValues(clustalw::Alignment*, clustalw::rangeNum*, int, int, int)’: clustalW/alignment/AlignmentOutput.cpp:2351:28: warning: catching polymorphic type ‘class clustalw::VectorOutOfRange’ by value [-Wcatch-value=] catch(VectorOutOfRange e) ^ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Sequence.o clustalW/alignment/Sequence.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalFileParser.o clustalW/fileInput/ClustalFileParser.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o EMBLFileParser.o clustalW/fileInput/EMBLFileParser.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o FileParser.o clustalW/fileInput/FileParser.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o FileReader.o clustalW/fileInput/FileReader.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o GDEFileParser.o clustalW/fileInput/GDEFileParser.cpp In file included from clustalW/fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/fileInput/../alignment/Alignment.h:42, from clustalW/fileInput/FileReader.h:12, from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o InFileStream.o clustalW/fileInput/InFileStream.cpp In file included from clustalW/fileInput/FileReader.cpp:29: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘int clustalw::FileReader::readSeqs(clustalw::Alignment*, int, std::__cxx11::string*)’: clustalW/fileInput/FileReader.cpp:155:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fileParser; // Means we dont need to delete it! ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/fileInput/FileReader.cpp: At global scope: clustalW/fileInput/FileReader.cpp:426:42: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void FileReader::checkInfile(int *nseqs, auto_ptr& fileParser) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/fileInput/FileReader.h:11, from clustalW/fileInput/FileReader.cpp:29: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/fileInput/FileReader.cpp: In member function ‘void clustalw::FileReader::checkInfile(int*, std::auto_ptr&)’: clustalW/fileInput/FileReader.cpp:555:21: warning: catching polymorphic type ‘class std::exception’ by value [-Wcatch-value=] catch(exception ex) ^~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o MSFFileParser.o clustalW/fileInput/MSFFileParser.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o PearsonFileParser.o clustalW/fileInput/PearsonFileParser.cpp clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual std::vector clustalw::MSFFileParser::getSeqRange(int, int, std::__cxx11::string*)’: clustalW/fileInput/MSFFileParser.cpp:34:79: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] vector MSFFileParser::getSeqRange(int firstSeq, int no, string *offendingSeq) ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp: In member function ‘virtual void clustalw::MSFFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)’: clustalW/fileInput/MSFFileParser.cpp:246:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:246:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] void MSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/MSFFileParser.cpp:247:86: warning: unused parameter ‘length’ [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ~~~~^~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o PIRFileParser.o clustalW/fileInput/PIRFileParser.cpp clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual clustalw::Sequence clustalw::PearsonFileParser::getSeq(int, std::__cxx11::string*)’: clustalW/fileInput/PearsonFileParser.cpp:199:60: warning: unused parameter ‘offendingSeq’ [-Wunused-parameter] Sequence PearsonFileParser::getSeq(int seqNum, string *offendingSeq) ~~~~~~~~^~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp: In member function ‘virtual void clustalw::PearsonFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)’: clustalW/fileInput/PearsonFileParser.cpp:444:55: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] void PearsonFileParser::getSecStructure(vector& gapPenaltyMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:40: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] vector& secStructMask, string& secStructName, ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:445:63: warning: unused parameter ‘secStructName’ [-Wunused-parameter] vector& secStructMask, string& secStructName, ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PearsonFileParser.cpp:446:53: warning: unused parameter ‘length’ [-Wunused-parameter] int &structPenalties, int length) ~~~~^~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o RSFFileParser.o clustalW/fileInput/RSFFileParser.cpp clustalW/fileInput/PIRFileParser.cpp: In member function ‘virtual void clustalw::PIRFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)’: clustalW/fileInput/PIRFileParser.cpp:292:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:292:81: warning: unused parameter ‘secStructMask’ [-Wunused-parameter] void PIRFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:45: warning: unused parameter ‘secStructName’ [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ~~~~~~~~^~~~~~~~~~~~~ clustalW/fileInput/PIRFileParser.cpp:293:86: warning: unused parameter ‘length’ [-Wunused-parameter] string& secStructName, int &structPenalties, int length) ~~~~^~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ClustalWResources.o clustalW/general/ClustalWResources.cpp clustalW/fileInput/RSFFileParser.cpp: In member function ‘virtual void clustalw::RSFFileParser::getSecStructure(std::vector&, std::vector&, std::__cxx11::string&, int&, int)’: clustalW/fileInput/RSFFileParser.cpp:240:51: warning: unused parameter ‘gapPenaltyMask’ [-Wunused-parameter] void RSFFileParser::getSecStructure(vector& gapPenaltyMask, vector& secStructMask, ~~~~~~~~~~~~~~^~~~~~~~~~~~~~ clustalW/general/ClustalWResources.cpp: In member function ‘std::__cxx11::string clustalw::ClustalWResources::findFile(std::__cxx11::string, clustalw::ClustalWResourcePathType) const’: clustalW/general/ClustalWResources.cpp:106:12: warning: array subscript 1 is above array bounds of ‘char [1]’ [-Warray-bounds] delim[1] = 0; ~~~~~~~^ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o DebugLog.o clustalW/general/DebugLog.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o OutputFile.o clustalW/general/OutputFile.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Stats.o clustalW/general/Stats.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o SymMatrix.o clustalW/general/SymMatrix.cpp In file included from clustalW/general/OutputFile.cpp:9: clustalW/general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/general/OutputFile.h:8, from clustalW/general/OutputFile.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o UserParameters.o clustalW/general/UserParameters.cpp In file included from clustalW/general/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/general/../alignment/Alignment.h:42, from clustalW/general/Stats.cpp:15: clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/general/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Utility.o clustalW/general/Utility.cpp clustalW/general/UserParameters.cpp: In constructor ‘clustalw::UserParameters::UserParameters(bool)’: clustalW/general/UserParameters.cpp:33:37: warning: unused parameter ‘log’ [-Wunused-parameter] UserParameters::UserParameters(bool log) ~~~~~^~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o VectorOutOfRange.o clustalW/general/VectorOutOfRange.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o CommandLineParser.o clustalW/interface/CommandLineParser.cpp clustalW/general/Utility.cpp: In member function ‘bool clustalw::Utility::lineType(char*, const char*)’: clustalW/general/Utility.cpp:251:8: warning: variable ‘n’ set but not used [-Wunused-but-set-variable] int n; ^ clustalW/general/Utility.cpp: In member function ‘virtual void clustalw::Utility::setInfoLabelPtr(QLabel*)’: clustalW/general/Utility.cpp:519:39: warning: unused parameter ‘ptrToLabelObj’ [-Wunused-parameter] void Utility::setInfoLabelPtr(QLabel* ptrToLabelObj) ~~~~~~~~^~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘double clustalw::Utility::getReal(const char*, double, double, double)’: clustalW/general/Utility.cpp:183:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ clustalW/general/Utility.cpp: In member function ‘int clustalw::Utility::getInt(const char*, int, int, int)’: clustalW/general/Utility.cpp:221:14: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets(line, MAXLINE, stdin); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o InteractiveMenu.o clustalW/interface/InteractiveMenu.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/../general/SquareMat.h:9, from clustalW/interface/../general/clustalw.h:43, from clustalW/interface/../Clustal.h:15, from clustalW/interface/CommandLineParser.h:18, from clustalW/interface/CommandLineParser.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Iteration.o clustalW/multipleAlign/Iteration.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o LowScoreSegProfile.o clustalW/multipleAlign/LowScoreSegProfile.cpp In file included from clustalW/interface/../fileInput/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/interface/../fileInput/../alignment/Alignment.h:42, from clustalW/interface/../fileInput/FileReader.h:12, from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/interface/../fileInput/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/interface/../Clustal.h:18, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/interface/../Clustal.h:20, from clustalW/interface/InteractiveMenu.h:15, from clustalW/interface/InteractiveMenu.cpp:23: clustalW/interface/../alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/interface/InteractiveMenu.cpp:21: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In constructor ‘clustalw::InteractiveMenu::InteractiveMenu()’: clustalW/interface/InteractiveMenu.cpp:41:11: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=] catch(bad_alloc) ^~~~~~~~~ In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/multipleAlign/Iteration.cpp:17: clustalW/multipleAlign/../tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/multipleAlign/../alignment/Alignment.h:38, from clustalW/multipleAlign/Iteration.h:8, from clustalW/multipleAlign/Iteration.cpp:13: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘int clustalw::InteractiveMenu::secStrOutputOptions()’: clustalW/interface/InteractiveMenu.cpp:520:36: warning: this statement may fall through [-Wimplicit-fallthrough=] clustalObj->getHelp('C'); ~~~~~~~~~~~~~~~~~~~^~~~~ clustalW/interface/InteractiveMenu.cpp:521:13: note: here case 'Q': ^~~~ clustalW/interface/InteractiveMenu.cpp: In member function ‘void clustalw::InteractiveMenu::doSystem()’: clustalW/interface/InteractiveMenu.cpp:1190:15: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(lin1.c_str()); ~~~~~~^~~~~~~~~~~~~~ clustalW/multipleAlign/Iteration.cpp: In member function ‘bool clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)’: clustalW/multipleAlign/Iteration.cpp:170:9: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] int count; ^~~~~ In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/LowScoreSegProfile.h:13, from clustalW/multipleAlign/LowScoreSegProfile.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/Iteration.cpp:231:24: warning: ignoring return value of ‘char* tmpnam(char*)’, declared with attribute warn_unused_result [-Wunused-result] tmpnam (buffer); ~~~~~~~^~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o MSA.o clustalW/multipleAlign/MSA.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/MSA.h:10, from clustalW/multipleAlign/MSA.cpp:16: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::multiSeqAlign(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, clustalw::AlignmentSteps*, int)’: clustalW/multipleAlign/MSA.cpp:340:11: warning: unused variable ‘alignmentScore’ [-Wunused-variable] int alignmentScore = alnPtr->alignScore(); // ?? check, FS, 2009-05-18 ^~~~~~~~~~~~~~ clustalW/multipleAlign/MSA.cpp: In member function ‘int clustalw::MSA::seqsAlignToProfile(clustalw::Alignment*, clustalw::DistMatrix*, std::vector*, int, std::__cxx11::string)’: clustalW/multipleAlign/MSA.cpp:359:35: warning: unused parameter ‘phylipName’ [-Wunused-parameter] string phylipName) ~~~~~~~^~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o MyersMillerProfileAlign.o clustalW/multipleAlign/MyersMillerProfileAlign.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileAlignAlgorithm.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.h:10, from clustalW/multipleAlign/MyersMillerProfileAlign.cpp:10: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileBase.o clustalW/multipleAlign/ProfileBase.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileStandard.o clustalW/multipleAlign/ProfileStandard.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileBase.h:14, from clustalW/multipleAlign/ProfileBase.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/ProfileBase.cpp: In member function ‘void clustalw::ProfileBase::calcResidueSpecificPen(clustalw::SeqArray*, std::vector*)’: clustalW/multipleAlign/ProfileBase.cpp:372:25: warning: comparison is always false due to limited range of data type [-Wtype-limits] if ((ix < 0) || (ix > _maxAA)) ~~~^~~ In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileStandard.h:9, from clustalW/multipleAlign/ProfileStandard.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ProfileWithSub.o clustalW/multipleAlign/ProfileWithSub.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o FastPairwiseAlign.o clustalW/pairwise/FastPairwiseAlign.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o FullPairwiseAlign.o clustalW/pairwise/FullPairwiseAlign.cpp In file included from clustalW/multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/multipleAlign/../alignment/Alignment.h:42, from clustalW/multipleAlign/ProfileWithSub.h:9, from clustalW/multipleAlign/ProfileWithSub.cpp:9: clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o SubMatrix.o clustalW/substitutionMatrix/SubMatrix.cpp In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FastPairwiseAlign.h:9, from clustalW/pairwise/FastPairwiseAlign.cpp:10: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/pairwise/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/pairwise/../alignment/Alignment.h:42, from clustalW/pairwise/PairwiseAlignBase.h:10, from clustalW/pairwise/FullPairwiseAlign.h:9, from clustalW/pairwise/FullPairwiseAlign.cpp:9: clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/pairwise/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/substitutionMatrix/SubMatrix.cpp:15: clustalW/substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::tempInterface(int, int)’: clustalW/substitutionMatrix/SubMatrix.cpp:1613:35: warning: unused parameter ‘alignResidueType’ [-Wunused-parameter] void SubMatrix::tempInterface(int alignResidueType, int alignType) ~~~~^~~~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp:1613:57: warning: unused parameter ‘alignType’ [-Wunused-parameter] void SubMatrix::tempInterface(int alignResidueType, int alignType) ~~~~^~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForHistogram(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1657:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] int maxRes; ^~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘void clustalw::SubMatrix::getQTMatrixForLowScoreSeg(int (*)[32])’: clustalW/substitutionMatrix/SubMatrix.cpp:1717:9: warning: variable ‘maxRes’ set but not used [-Wunused-but-set-variable] int maxRes; ^~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o AlignmentSteps.o clustalW/tree/AlignmentSteps.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTree.o clustalW/tree/ClusterTree.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o ClusterTreeOutput.o clustalW/tree/ClusterTreeOutput.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o NJTree.o clustalW/tree/NJTree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/ClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/ClusterTree.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/ClusterTree.cpp: In member function ‘void clustalw::ClusterTree::calcPercIdentity(std::ofstream*, clustalw::Alignment*)’: clustalW/tree/ClusterTree.cpp:580:9: warning: variable ‘rs’ set but not used [-Wunused-but-set-variable] int rs = 0, rl = 0; ^~ clustalW/tree/ClusterTree.cpp:580:17: warning: variable ‘rl’ set but not used [-Wunused-but-set-variable] int rs = 0, rl = 0; ^~ In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTreeOutput.h:11, from clustalW/tree/ClusterTreeOutput.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/substitutionMatrix/SubMatrix.cpp: In member function ‘int clustalw::SubMatrix::readMatrixSeries(const char*, clustalw::Matrix&, clustalw::Xref&)’: clustalW/substitutionMatrix/SubMatrix.cpp:1103:19: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized] return (maxRes); ^ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o RandomGenerator.o clustalW/tree/RandomGenerator.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Tree.o clustalW/tree/Tree.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o TreeInterface.o clustalW/tree/TreeInterface.cpp In file included from clustalW/tree/Tree.cpp:10: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr createSets(int firstSeq, int lastSeq); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/Tree.cpp:278:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr Tree::createSets(int firstSeq, int lastSeq) ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/Tree.cpp: In member function ‘std::auto_ptr clustalw::Tree::createSets(int, int)’: clustalW/tree/Tree.cpp:280:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progAlignSteps; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/tree/../alignment/Alignment.h:38, from clustalW/tree/Tree.h:13, from clustalW/tree/Tree.cpp:10: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o UnRootedClusterTree.o clustalW/tree/UnRootedClusterTree.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o Node.o clustalW/tree/UPGMA/Node.cpp In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/ClusterTree.h:20, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/../alignment/Alignment.h:42, from clustalW/tree/TreeInterface.h:19, from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:38:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMat(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:57:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTree(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:102:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatNJ(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:108:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsUseOldGuideTreeNJ(DistMatrix* distMat, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:133:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromTreeNJ(Alignment* alignPtr, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:138:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr getWeightsAndStepsFromDistMatUPGMA(vector* seqWeights, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:15: clustalW/tree/TreeInterface.h:142:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/ClusterTree.h:16, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/UnRootedClusterTree.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/ClusterTree.h:23, from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UnRootedClusterTree.h:8, from clustalW/tree/TreeInterface.cpp:17: clustalW/tree/ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:18: clustalW/tree/Tree.h:26:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr createSets(int firstSeq, int lastSeq); ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/TreeInterface.cpp:23: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp:31:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp:103:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp:195:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatNJ(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string*, bool*)’: clustalW/tree/TreeInterface.cpp:200:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:208:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsUseOldGuideTreeNJ(clustalw::DistMatrix*, clustalw::Alignment*, std::__cxx11::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:214:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:439:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromTreeNJ(clustalw::Alignment*, clustalw::DistMatrix*, std::__cxx11::string*, std::vector*, int, int, bool*)’: clustalW/tree/TreeInterface.cpp:445:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:485:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::getWeightsAndStepsFromDistMatUPGMA(std::vector*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string*, bool*)’: clustalW/tree/TreeInterface.cpp:490:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: At global scope: clustalW/tree/TreeInterface.cpp:503:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr TreeInterface::generateTreeFromDistMatUPGMA(RootedGuideTree* guideTree, DistMatrix* distMat, Alignment *alignPtr, int seq1, int nSeqs, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/TreeInterface.cpp: In member function ‘std::auto_ptr clustalw::TreeInterface::generateTreeFromDistMatUPGMA(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string*, bool*)’: clustalW/tree/TreeInterface.cpp:506:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/TreeInterface.h:17, from clustalW/tree/TreeInterface.cpp:15: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o RootedClusterTree.o clustalW/tree/UPGMA/RootedClusterTree.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o RootedGuideTree.o clustalW/tree/UPGMA/RootedGuideTree.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/../ClusterTree.h:20, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../ClusterTree.h:23, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../../general/OutputFile.h:26:14: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr file; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/../ClusterTree.h:70:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr quickDistMat; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedGuideTree.cpp:10: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: clustalW/tree/UPGMA/RootedClusterTree.h:22:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFromDistMatrix(RootedGuideTree* phyloTree, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr generateTree(RootedGuideTree* phyTree, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/RootedClusterTree.cpp:11: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp:17:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr RootedClusterTree::treeFromDistMatrix(RootedGuideTree* phyloTree,DistMatrix* distMat, Alignment *alignPtr, ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/UPGMA/RootedClusterTree.cpp: In member function ‘std::auto_ptr clustalw::RootedClusterTree::treeFromDistMatrix(clustalw::RootedGuideTree*, clustalw::DistMatrix*, clustalw::Alignment*, int, int, std::__cxx11::string&)’: clustalW/tree/UPGMA/RootedClusterTree.cpp:21:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from clustalW/tree/UPGMA/../ClusterTree.h:16, from clustalW/tree/UPGMA/RootedClusterTree.h:8, from clustalW/tree/UPGMA/RootedClusterTree.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o RootedTreeOutput.o clustalW/tree/UPGMA/RootedTreeOutput.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o UPGMAAlgorithm.o clustalW/tree/UPGMA/UPGMAAlgorithm.cpp g++ -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -dM -E -o moc_predefs.h /usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/features/data/dummy.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include AlignmentFormatOptions.h -o moc_AlignmentFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include AlignmentParameters.h -o moc_AlignmentParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include AlignmentViewerWidget.h -o moc_AlignmentViewerWidget.cpp In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/RootedTreeOutput.h:15, from clustalW/tree/UPGMA/RootedTreeOutput.cpp:9: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/tree/UPGMA/../../alignment/Alignment.h:42, from clustalW/tree/UPGMA/RootedGuideTree.h:17, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:8, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/tree/UPGMA/../../alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include AlignmentWidget.h -o moc_AlignmentWidget.cpp In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:23:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr generateTree(RootedGuideTree* phyTree, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: clustalW/tree/UPGMA/UPGMAAlgorithm.h:51:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr progSteps; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:27:1: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr UPGMAAlgorithm::generateTree(RootedGuideTree* phyTree, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/tree/UPGMA/../../general/SquareMat.h:9, from clustalW/tree/UPGMA/../../general/clustalw.h:43, from clustalW/tree/UPGMA/UPGMAAlgorithm.h:6, from clustalW/tree/UPGMA/UPGMAAlgorithm.cpp:4: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include AlignOutputFileNames.h -o moc_AlignOutputFileNames.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include BootstrapTreeDialog.h -o moc_BootstrapTreeDialog.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include ColorFileXmlParser.h -o moc_ColorFileXmlParser.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include ColumnScoreParams.h -o moc_ColumnScoreParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include FileDialog.h -o moc_FileDialog.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include HelpDisplayWidget.h -o moc_HelpDisplayWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include HistogramWidget.h -o moc_HistogramWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include LowScoringSegParams.h -o moc_LowScoringSegParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include mainwindow.h -o moc_mainwindow.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include PairwiseParams.h -o moc_PairwiseParams.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include ProteinGapParameters.h -o moc_ProteinGapParameters.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include PSPrinter.h -o moc_PSPrinter.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include SaveSeqFile.h -o moc_SaveSeqFile.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include SearchForString.h -o moc_SearchForString.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include SecStructOptions.h -o moc_SecStructOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include SeqNameWidget.h -o moc_SeqNameWidget.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include TreeFormatOptions.h -o moc_TreeFormatOptions.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include TreeOutputFileNames.h -o moc_TreeOutputFileNames.cpp /usr/lib/qt5/bin/moc -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB --include /<>/clustalx-2.1+lgpl/moc_predefs.h -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl -I/<>/clustalx-2.1+lgpl/clustalW/general -I/<>/clustalx-2.1+lgpl/clustalW/substitutionMatrix -I/<>/clustalx-2.1+lgpl/clustalW/alignment -I/<>/clustalx-2.1+lgpl/clustalW -I/<>/clustalx-2.1+lgpl/clustalW/fileInput -I/<>/clustalx-2.1+lgpl/clustalW/interface -I/<>/clustalx-2.1+lgpl/clustalW/pairwise -I/<>/clustalx-2.1+lgpl/clustalW/multipleAlign -I/<>/clustalx-2.1+lgpl/clustalW/tree -I/<>/clustalx-2.1+lgpl/clustalW/tree/UPGMA -I/usr/include/powerpc64le-linux-gnu/qt5 -I/usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -I/usr/include/powerpc64le-linux-gnu/qt5/QtGui -I/usr/include/powerpc64le-linux-gnu/qt5/QtXml -I/usr/include/powerpc64le-linux-gnu/qt5/QtCore -I/usr/include/c++/8 -I/usr/include/powerpc64le-linux-gnu/c++/8 -I/usr/include/c++/8/backward -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include -I/usr/local/include -I/usr/lib/gcc/powerpc64le-linux-gnu/8/include-fixed -I/usr/include/powerpc64le-linux-gnu -I/usr/include WritePostscriptFile.h -o moc_WritePostscriptFile.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentFormatOptions.o moc_AlignmentFormatOptions.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentParameters.o moc_AlignmentParameters.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentViewerWidget.o moc_AlignmentViewerWidget.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignmentWidget.o moc_AlignmentWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from moc_AlignmentViewerWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentWidget.h:41, from moc_AlignmentWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_AlignOutputFileNames.o moc_AlignOutputFileNames.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_BootstrapTreeDialog.o moc_BootstrapTreeDialog.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColorFileXmlParser.o moc_ColorFileXmlParser.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from BootstrapTreeDialog.h:11, from moc_BootstrapTreeDialog.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ColumnScoreParams.o moc_ColumnScoreParams.cpp In file included from moc_BootstrapTreeDialog.cpp:9: BootstrapTreeDialog.h:70:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from BootstrapTreeDialog.h:10, from moc_BootstrapTreeDialog.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from AlignOutputFileNames.h:10, from moc_AlignOutputFileNames.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_AlignOutputFileNames.cpp:9: AlignOutputFileNames.h:106:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr outFileNames; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from AlignOutputFileNames.h:9, from moc_AlignOutputFileNames.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_FileDialog.o moc_FileDialog.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HelpDisplayWidget.o moc_HelpDisplayWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from ColorFileXmlParser.h:9, from moc_ColorFileXmlParser.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_HistogramWidget.o moc_HistogramWidget.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_LowScoringSegParams.o moc_LowScoringSegParams.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HelpDisplayWidget.h:18, from moc_HelpDisplayWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_mainwindow.o moc_mainwindow.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PairwiseParams.o moc_PairwiseParams.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_ProteinGapParameters.o moc_ProteinGapParameters.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_PSPrinter.o moc_PSPrinter.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/Clustal.h:18, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/fileInput/FileReader.h:42:38: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] void checkInfile(int* nseqs, auto_ptr& fileParser); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:68:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] bool openExplicitFile(auto_ptr& outFile, string fileName); ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:69:31: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] string openOutputFile(auto_ptr& outFile, string prompt, string path, ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:75:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr clustalOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:76:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gcgOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:77:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nbrfOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:78:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr phylipOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:79:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr gdeOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:80:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr nexusOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/Clustal.h:20, from mainwindow.h:45, from moc_mainwindow.cpp:9: clustalW/alignment/AlignmentOutput.h:81:9: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr fastaOutFile; ^~~~~~~~ In file included from /usr/include/c++/8/bits/locale_conv.h:41, from /usr/include/c++/8/locale:43, from /usr/include/c++/8/iomanip:43, from clustalW/alignment/Alignment.h:38, from AlignmentViewerWidget.h:36, from mainwindow.h:37, from moc_mainwindow.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SaveSeqFile.o moc_SaveSeqFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from HardCodedColorScheme.h:8, from ColorParameters.h:11, from PSPrinter.h:11, from moc_PSPrinter.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SearchForString.o moc_SearchForString.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SecStructOptions.o moc_SecStructOptions.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_SeqNameWidget.o moc_SeqNameWidget.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from SaveSeqFile.h:9, from moc_SaveSeqFile.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeFormatOptions.o moc_TreeFormatOptions.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_TreeOutputFileNames.o moc_TreeOutputFileNames.cpp g++ -c -pipe -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -W -D_REENTRANT -fPIC -DOS_UNIX -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DQT_GUI_LIB -DQT_XML_LIB -DQT_CORE_LIB -g -O3 -fdebug-prefix-map=/<>/clustalx-2.1+lgpl=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -IclustalW/general -IclustalW/substitutionMatrix -IclustalW/alignment -IclustalW -IclustalW/fileInput -IclustalW/interface -IclustalW/pairwise -IclustalW/multipleAlign -IclustalW/tree -IclustalW/tree/UPGMA -isystem /usr/include/powerpc64le-linux-gnu/qt5 -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtWidgets -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtGui -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtXml -isystem /usr/include/powerpc64le-linux-gnu/qt5/QtCore -I. -isystem /usr/include/libdrm -I/usr/lib/powerpc64le-linux-gnu/qt5/mkspecs/linux-g++ -o moc_WritePostscriptFile.o moc_WritePostscriptFile.cpp In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from SeqNameWidget.h:41, from moc_SeqNameWidget.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from TreeOutputFileNames.h:10, from moc_TreeOutputFileNames.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_TreeOutputFileNames.cpp:9: TreeOutputFileNames.h:73:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr treeFileNames; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from TreeOutputFileNames.h:9, from moc_TreeOutputFileNames.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ In file included from clustalW/alignment/../substitutionMatrix/globalmatrix.h:8, from clustalW/alignment/Alignment.h:42, from ClustalQtParams.h:13, from WritePostscriptFile.h:10, from moc_WritePostscriptFile.cpp:9: clustalW/alignment/../substitutionMatrix/SubMatrix.h:96:62: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printInFormat(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ clustalW/alignment/../substitutionMatrix/SubMatrix.h:97:66: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] void printVectorToFile(vector& temp, char* name = "tempfile.out"); ^~~~~~~~~~~~~~ In file included from moc_WritePostscriptFile.cpp:9: WritePostscriptFile.h:88:5: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] auto_ptr params; ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from WritePostscriptFile.h:9, from moc_WritePostscriptFile.cpp:9: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ g++ -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o clustalx AlignmentFormatOptions.o AlignmentParameters.o AlignmentViewerWidget.o AlignmentWidget.o AlignOutputFileNames.o BootstrapTreeDialog.o ColorFileXmlParser.o ColorParameters.o ColumnScoreParams.o FileDialog.o HardCodedColorScheme.o HelpDisplayWidget.o HistogramWidget.o KeyController.o LowScoringSegParams.o main.o mainwindow.o PairwiseParams.o PostscriptFileParams.o ProteinGapParameters.o PSPrinter.o QTUtility.o Resources.o SaveSeqFile.o SearchForString.o SecStructOptions.o SeqNameWidget.o TreeFormatOptions.o TreeOutputFileNames.o WritePostscriptFile.o Clustal.o Help.o Alignment.o AlignmentOutput.o ObjectiveScore.o Sequence.o ClustalFileParser.o EMBLFileParser.o FileParser.o FileReader.o GDEFileParser.o InFileStream.o MSFFileParser.o PearsonFileParser.o PIRFileParser.o RSFFileParser.o ClustalWResources.o DebugLog.o OutputFile.o Stats.o SymMatrix.o UserParameters.o Utility.o VectorOutOfRange.o CommandLineParser.o InteractiveMenu.o Iteration.o LowScoreSegProfile.o MSA.o MyersMillerProfileAlign.o ProfileBase.o ProfileStandard.o ProfileWithSub.o FastPairwiseAlign.o FullPairwiseAlign.o SubMatrix.o AlignmentSteps.o ClusterTree.o ClusterTreeOutput.o NJTree.o RandomGenerator.o Tree.o TreeInterface.o UnRootedClusterTree.o Node.o RootedClusterTree.o RootedGuideTree.o RootedTreeOutput.o UPGMAAlgorithm.o moc_AlignmentFormatOptions.o moc_AlignmentParameters.o moc_AlignmentViewerWidget.o moc_AlignmentWidget.o moc_AlignOutputFileNames.o moc_BootstrapTreeDialog.o moc_ColorFileXmlParser.o moc_ColumnScoreParams.o moc_FileDialog.o moc_HelpDisplayWidget.o moc_HistogramWidget.o moc_LowScoringSegParams.o moc_mainwindow.o moc_PairwiseParams.o moc_ProteinGapParameters.o moc_PSPrinter.o moc_SaveSeqFile.o moc_SearchForString.o moc_SecStructOptions.o moc_SeqNameWidget.o moc_TreeFormatOptions.o moc_TreeOutputFileNames.o moc_WritePostscriptFile.o -lQt5Widgets -lQt5Gui -lQt5Xml -lQt5Core /usr/lib/powerpc64le-linux-gnu/libGL.so -lpthread /usr/bin/ld: Iteration.o: in function `clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)': ./clustalW/multipleAlign/Iteration.cpp:231: warning: the use of `tmpnam' is dangerous, better use `mkstemp' make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>/clustalx-2.1+lgpl' dh_installchangelogs debian/CHANGELOG.upstream make[1]: Leaving directory '/<>/clustalx-2.1+lgpl' dh_installman -a dh_installmime -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing clustalx-dbgsym (in debian/.debhelper/clustalx/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing clustalx (in debian/clustalx); do_strip: , oemstrip: debian/clustalx/usr/share/applications/clustalx.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/clustalx/dbgsym-root/DEBIAN/control, package clustalx-dbgsym, directory debian/.debhelper/clustalx/dbgsym-root dpkg-deb: building package 'clustalx-dbgsym' in 'debian/.debhelper/scratch-space/build-clustalx/clustalx-dbgsym_2.1+lgpl-8_ppc64el.deb'. pkgstripfiles: processing control file: debian/clustalx/DEBIAN/control, package clustalx, directory debian/clustalx .. removing usr/share/doc/clustalx/changelog.gz pkgstripfiles: Truncating usr/share/doc/clustalx/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package clustalx ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clustalx' in '../clustalx_2.1+lgpl-8_ppc64el.deb'. Renaming clustalx-dbgsym_2.1+lgpl-8_ppc64el.deb to clustalx-dbgsym_2.1+lgpl-8_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clustalx_2.1+lgpl-8_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190421-1622 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalx_2.1+lgpl-8_ppc64el.changes: ------------------------------------ Format: 1.8 Date: Sun, 24 Feb 2019 20:04:40 +0100 Source: clustalx Binary: clustalx Architecture: ppc64el Version: 2.1+lgpl-8 Distribution: eoan-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: clustalx - Multiple alignment of nucleic acid and protein sequences (graphic Closes: 923120 Changes: clustalx (2.1+lgpl-8) unstable; urgency=medium . [ Jelmer Vernooij ] * Trim trailing whitespace. . [ Helmut Grohne ] * Fix FTCBFS: Let dh_auto_configure pass cross flags to qmake. Closes: #923120 . [ Andreas Tille ] * Standards-Version: 4.3.0 Checksums-Sha1: 007acc846aac7c91ed0f75acb8cf09811f2bd0ef 13250172 clustalx-dbgsym_2.1+lgpl-8_ppc64el.ddeb 4045f77148ecdba3f80b359adb6c50f8eb0e56b3 10669 clustalx_2.1+lgpl-8_ppc64el.buildinfo 1ac68dda63e98b7890b360d2045777fb58ae5af3 462084 clustalx_2.1+lgpl-8_ppc64el.deb Checksums-Sha256: 150e82da863c401e16eb86724a7b9958a073a2776398dd0a0db790cb0c2bdda4 13250172 clustalx-dbgsym_2.1+lgpl-8_ppc64el.ddeb e89692021ef61268ae7a9139c2dcd1e0bbfb43e387be3568c19674096fe935ab 10669 clustalx_2.1+lgpl-8_ppc64el.buildinfo 5dcca00ecb34b3a914acfb01700050ea003e04bdb6e21e4d8366c8b701b57dc7 462084 clustalx_2.1+lgpl-8_ppc64el.deb Files: 00c74620a4d1fd89001a4a26939a8602 13250172 debug optional clustalx-dbgsym_2.1+lgpl-8_ppc64el.ddeb 5da9df2cd5a35b6c217df9a58148947e 10669 science optional clustalx_2.1+lgpl-8_ppc64el.buildinfo 96c003cc9a421de71079cb2243bdf1c1 462084 science optional clustalx_2.1+lgpl-8_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalx_2.1+lgpl-8_ppc64el.deb ------------------------------- new debian package, version 2.0. size 462084 bytes: control archive=1472 bytes. 1629 bytes, 28 lines control 804 bytes, 12 lines md5sums Package: clustalx Version: 2.1+lgpl-8 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1721 Depends: libc6 (>= 2.29), libgcc1 (>= 1:3.0), libqt5core5a (>= 5.7.0), libqt5gui5 (>= 5.2.0) | libqt5gui5-gles (>= 5.2.0), libqt5widgets5 (>= 5.0.2), libqt5xml5 (>= 5.0.2), libstdc++6 (>= 5.2) Suggests: clustalw, texlive-latex-extra, boxshade Section: science Priority: optional Homepage: http://www.clustal.org/clustal2/ Description: Multiple alignment of nucleic acid and protein sequences (graphical interface) This package offers a GUI interface for the Clustal multiple sequence alignment program. It provides an integrated environment for performing multiple sequence- and profile-alignments to analyse the results. The sequence alignment is displayed in a window on the screen. A versatile coloring scheme has been incorporated to highlight conserved features in the alignment. For professional presentations, one should use the texshade LaTeX package or boxshade. . The pull-down menus at the top of the window allow you to select all the options required for traditional multiple sequence and profile alignment. You can cut-and-paste sequences to change the order of the alignment; you can select a subset of sequences to be aligned; you can select a sub-range of the alignment to be realigned and inserted back into the original alignment. . An alignment quality analysis can be performed and low-scoring segments or exceptional residues can be highlighted. drwxr-xr-x root/root 0 2019-02-24 19:04 ./ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/bin/ -rwxr-xr-x root/root 1651544 2019-02-24 19:04 ./usr/bin/clustalx drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/mime/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/lib/mime/packages/ -rw-r--r-- root/root 114 2019-02-24 19:04 ./usr/lib/mime/packages/clustalx drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/applications/ -rw-r--r-- root/root 876 2019-02-24 19:04 ./usr/share/applications/clustalx.desktop drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/clustalx/ -rw-r--r-- root/root 69428 2010-11-17 10:12 ./usr/share/clustalx/clustalx.hlp -rw-r--r-- root/root 847 2010-11-17 10:12 ./usr/share/clustalx/coldna.xml -rw-r--r-- root/root 1276 2010-11-17 10:12 ./usr/share/clustalx/colprint.xml -rw-r--r-- root/root 5047 2010-11-17 10:12 ./usr/share/clustalx/colprot.xml drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/doc/clustalx/ -rw-r--r-- root/root 410 2019-02-24 19:04 ./usr/share/doc/clustalx/README.Debian -rw-r--r-- root/root 1535 2019-02-24 19:04 ./usr/share/doc/clustalx/changelog.Debian.gz -rw-r--r-- root/root 1826 2019-02-24 19:04 ./usr/share/doc/clustalx/copyright drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/man/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/man/man1/ -rw-r--r-- root/root 797 2019-02-24 19:04 ./usr/share/man/man1/clustalx.1.gz drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/mime/ drwxr-xr-x root/root 0 2019-02-24 19:04 ./usr/share/mime/packages/ -rw-r--r-- root/root 513 2019-02-24 19:04 ./usr/share/mime/packages/clustalx.xml +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 196064 Build-Time: 73 Distribution: eoan-proposed Host Architecture: ppc64el Install-Time: 33 Job: clustalx_2.1+lgpl-8.dsc Machine Architecture: ppc64el Package: clustalx Package-Time: 107 Source-Version: 2.1+lgpl-8 Space: 196064 Status: successful Version: 2.1+lgpl-8 -------------------------------------------------------------------------------- Finished at 20190421-1622 Build needed 00:01:47, 196064k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=eoan --arch=ppc64el PACKAGEBUILD-16664673 Scanning for processes to kill in build PACKAGEBUILD-16664673