https://launchpad.net/ubuntu/+source/clustalo/1.2.4-5/+build/19213541 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lcy01-065 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 Buildd toolchain package versions: launchpad-buildd_188 python-lpbuildd_188 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu1 dpkg-dev_1.19.7ubuntu2 python-debian_0.1.36build1. Syncing the system clock with the buildd NTP service... 27 Apr 21:02:40 ntpdate[129972]: adjust time server 10.211.37.1 offset -0.000727 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19213541 --image-type chroot /home/buildd/filecache-default/f3eb94e98b295919e6c8d0c40a2cb7b393a0119c Creating target for build PACKAGEBUILD-19213541 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19213541 Starting target for build PACKAGEBUILD-19213541 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19213541 'deb http://ftpmaster.internal/ubuntu groovy main universe' 'deb http://ftpmaster.internal/ubuntu groovy-security main universe' 'deb http://ftpmaster.internal/ubuntu groovy-updates main universe' 'deb http://ftpmaster.internal/ubuntu groovy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-19213541 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19213541 Updating target for build PACKAGEBUILD-19213541 Get:1 http://ftpmaster.internal/ubuntu groovy InRelease [268 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-security InRelease [89.1 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-updates InRelease [89.1 kB] Get:4 http://ftpmaster.internal/ubuntu groovy-proposed InRelease [109 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 Packages [879 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/universe riscv64 Packages [7951 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/universe Translation-en [5125 kB] Get:9 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 Packages [70.8 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main Translation-en [52.9 kB] Get:11 http://ftpmaster.internal/ubuntu groovy-proposed/universe riscv64 Packages [243 kB] Get:12 http://ftpmaster.internal/ubuntu groovy-proposed/universe Translation-en [220 kB] Fetched 15.6 MB in 26s (610 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files cpp-9 dash debconf g++-9 gcc-9 gcc-9-base libgcc-9-dev libgpm2 libidn2-0 libncursesw6 libssl1.1 libstdc++-9-dev libsystemd0 libtinfo6 libudev1 make ncurses-base ncurses-bin openssl 20 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 26.6 MB of archives. After this operation, 18.4 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu groovy/main riscv64 base-files riscv64 11ubuntu6 [59.6 kB] Get:2 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 debconf all 1.5.74 [121 kB] Get:3 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 dash riscv64 0.5.10.2-7 [82.0 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main riscv64 ncurses-bin riscv64 6.2-1 [166 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 ncurses-base all 6.2-1 [18.7 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsystemd0 riscv64 245.4-4ubuntu3 [243 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main riscv64 libncursesw6 riscv64 6.2-1 [116 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtinfo6 riscv64 6.2-1 [78.7 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main riscv64 libudev1 riscv64 245.4-4ubuntu3 [70.4 kB] Get:10 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libidn2-0 riscv64 2.3.0-1 [50.5 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main riscv64 libssl1.1 riscv64 1.1.1f-1ubuntu2 [967 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main riscv64 openssl riscv64 1.1.1f-1ubuntu2 [595 kB] Get:13 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 g++-9 riscv64 9.3.0-11ubuntu2 [6930 kB] Get:14 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 gcc-9 riscv64 9.3.0-11ubuntu2 [6789 kB] Get:15 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libstdc++-9-dev riscv64 9.3.0-11ubuntu2 [3681 kB] Get:16 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libgcc-9-dev riscv64 9.3.0-11ubuntu2 [404 kB] Get:17 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 cpp-9 riscv64 9.3.0-11ubuntu2 [6047 kB] Get:18 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 gcc-9-base riscv64 9.3.0-11ubuntu2 [19.4 kB] Get:19 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libgpm2 riscv64 1.20.7-6 [14.2 kB] Get:20 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 make riscv64 4.2.1-1.3 [152 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.6 MB in 4s (6171 kB/s) (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu6_riscv64.deb ... Unpacking base-files (11ubuntu6) over (11ubuntu5) ... Setting up base-files (11ubuntu6) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../debconf_1.5.74_all.deb ... Unpacking debconf (1.5.74) over (1.5.73) ... Setting up debconf (1.5.74) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../dash_0.5.10.2-7_riscv64.deb ... Unpacking dash (0.5.10.2-7) over (0.5.10.2-6) ... Setting up dash (0.5.10.2-7) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../ncurses-bin_6.2-1_riscv64.deb ... Unpacking ncurses-bin (6.2-1) over (6.2-0ubuntu2) ... Setting up ncurses-bin (6.2-1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../ncurses-base_6.2-1_all.deb ... Unpacking ncurses-base (6.2-1) over (6.2-0ubuntu2) ... Setting up ncurses-base (6.2-1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libsystemd0_245.4-4ubuntu3_riscv64.deb ... Unpacking libsystemd0:riscv64 (245.4-4ubuntu3) over (245.4-4ubuntu1) ... Setting up libsystemd0:riscv64 (245.4-4ubuntu3) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libncursesw6_6.2-1_riscv64.deb ... Unpacking libncursesw6:riscv64 (6.2-1) over (6.2-0ubuntu2) ... Preparing to unpack .../libtinfo6_6.2-1_riscv64.deb ... Unpacking libtinfo6:riscv64 (6.2-1) over (6.2-0ubuntu2) ... Setting up libtinfo6:riscv64 (6.2-1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libudev1_245.4-4ubuntu3_riscv64.deb ... Unpacking libudev1:riscv64 (245.4-4ubuntu3) over (245.4-4ubuntu1) ... Setting up libudev1:riscv64 (245.4-4ubuntu3) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../libidn2-0_2.3.0-1_riscv64.deb ... Unpacking libidn2-0:riscv64 (2.3.0-1) over (2.2.0-2) ... Setting up libidn2-0:riscv64 (2.3.0-1) ... (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../0-libssl1.1_1.1.1f-1ubuntu2_riscv64.deb ... Unpacking libssl1.1:riscv64 (1.1.1f-1ubuntu2) over (1.1.1f-1ubuntu1) ... Preparing to unpack .../1-openssl_1.1.1f-1ubuntu2_riscv64.deb ... Unpacking openssl (1.1.1f-1ubuntu2) over (1.1.1f-1ubuntu1) ... Preparing to unpack .../2-g++-9_9.3.0-11ubuntu2_riscv64.deb ... Unpacking g++-9 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../3-gcc-9_9.3.0-11ubuntu2_riscv64.deb ... Unpacking gcc-9 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../4-libstdc++-9-dev_9.3.0-11ubuntu2_riscv64.deb ... Unpacking libstdc++-9-dev:riscv64 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../5-libgcc-9-dev_9.3.0-11ubuntu2_riscv64.deb ... Unpacking libgcc-9-dev:riscv64 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../6-cpp-9_9.3.0-11ubuntu2_riscv64.deb ... Unpacking cpp-9 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../7-gcc-9-base_9.3.0-11ubuntu2_riscv64.deb ... Unpacking gcc-9-base:riscv64 (9.3.0-11ubuntu2) over (9.3.0-10ubuntu2) ... Preparing to unpack .../8-libgpm2_1.20.7-6_riscv64.deb ... Unpacking libgpm2:riscv64 (1.20.7-6) over (1.20.7-5) ... Preparing to unpack .../9-make_4.2.1-1.3_riscv64.deb ... Unpacking make (4.2.1-1.3) over (4.2.1-1.2) ... Setting up libgpm2:riscv64 (1.20.7-6) ... Setting up libssl1.1:riscv64 (1.1.1f-1ubuntu2) ... Setting up make (4.2.1-1.3) ... Setting up libncursesw6:riscv64 (6.2-1) ... Setting up openssl (1.1.1f-1ubuntu2) ... Setting up gcc-9-base:riscv64 (9.3.0-11ubuntu2) ... Setting up libgcc-9-dev:riscv64 (9.3.0-11ubuntu2) ... Setting up cpp-9 (9.3.0-11ubuntu2) ... Setting up gcc-9 (9.3.0-11ubuntu2) ... Setting up libstdc++-9-dev:riscv64 (9.3.0-11ubuntu2) ... Setting up g++-9 (9.3.0-11ubuntu2) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-19213541 riscv64 groovy-proposed -c chroot:build-PACKAGEBUILD-19213541 --arch=riscv64 --dist=groovy-proposed --nolog clustalo_1.2.4-5.dsc Initiating build PACKAGEBUILD-19213541 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lcy01-065 +==============================================================================+ | clustalo 1.2.4-5 (riscv64) Mon, 27 Apr 2020 21:05:21 +0000 | +==============================================================================+ Package: clustalo Version: 1.2.4-5 Source Version: 1.2.4-5 Distribution: groovy-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-19213541/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/clustalo-W3HMC4/resolver-qsQN96' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clustalo_1.2.4-5.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/clustalo-W3HMC4/clustalo-1.2.4' with '<>' I: NOTICE: Log filtering will replace 'build/clustalo-W3HMC4' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), libargtable2-dev, doxygen, graphviz, sphinx-common, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), libargtable2-dev, doxygen, graphviz, sphinx-common, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [406 B] Get:5 copy:/<>/apt_archive ./ Packages [489 B] Fetched 1852 B in 0s (5915 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgpm2 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian libann0 libarchive-zip-perl libargtable2-0 libargtable2-dev libargtable2-docs libbsd0 libcairo2 libcdt5 libcgraph6 libcroco3 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu66 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblab-gamut1 libltdl7 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libsigsegv2 libsm6 libsub-override-perl libthai-data libthai0 libtiff5 libtool libuchardet0 libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 m4 man-db po-debconf sphinx-common tzdata ucf x11-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff libgd-tools libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx fonts-liberation libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin javascript-common libltdl-dev libmail-sendmail-perl python3-sphinx The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism doxygen dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian libann0 libarchive-zip-perl libargtable2-0 libargtable2-dev libargtable2-docs libbsd0 libcairo2 libcdt5 libcgraph6 libcroco3 libdatrie1 libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0 libgd3 libglib2.0-0 libgraphite2-3 libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu66 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore liblab-gamut1 libltdl7 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libsigsegv2 libsm6 libsub-override-perl libthai-data libthai0 libtiff5 libtool libuchardet0 libwebp6 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 m4 man-db po-debconf sbuild-build-depends-main-dummy sphinx-common tzdata ucf x11-common 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 32.0 MB of archives. After this operation, 119 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [912 B] Get:2 http://ftpmaster.internal/ubuntu groovy/main riscv64 libbsd0 riscv64 0.10.0-1 [42.0 kB] Get:3 http://ftpmaster.internal/ubuntu groovy/main riscv64 bsdmainutils riscv64 11.1.2ubuntu3 [176 kB] Get:4 http://ftpmaster.internal/ubuntu groovy/main riscv64 libuchardet0 riscv64 0.0.6-3build1 [64.9 kB] Get:5 http://ftpmaster.internal/ubuntu groovy/main riscv64 groff-base riscv64 1.22.4-4build1 [816 kB] Get:6 http://ftpmaster.internal/ubuntu groovy/main riscv64 libpipeline1 riscv64 1.5.2-2build1 [23.9 kB] Get:7 http://ftpmaster.internal/ubuntu groovy/main riscv64 man-db riscv64 2.9.1-1 [1075 kB] Get:8 http://ftpmaster.internal/ubuntu groovy/main riscv64 libmagic-mgc riscv64 1:5.38-4 [218 kB] Get:9 http://ftpmaster.internal/ubuntu groovy/main riscv64 libmagic1 riscv64 1:5.38-4 [70.5 kB] Get:10 http://ftpmaster.internal/ubuntu groovy/main riscv64 file riscv64 1:5.38-4 [22.5 kB] Get:11 http://ftpmaster.internal/ubuntu groovy/main riscv64 libelf1 riscv64 0.176-1.1build1 [41.8 kB] Get:12 http://ftpmaster.internal/ubuntu groovy/main riscv64 libexpat1 riscv64 2.2.9-1build1 [68.8 kB] Get:13 http://ftpmaster.internal/ubuntu groovy/main riscv64 libfribidi0 riscv64 1.0.8-2 [23.8 kB] Get:14 http://ftpmaster.internal/ubuntu groovy/main riscv64 libglib2.0-0 riscv64 2.64.2-1~fakesync1 [1123 kB] Get:15 http://ftpmaster.internal/ubuntu groovy/main riscv64 tzdata all 2019c-3ubuntu1 [294 kB] Get:16 http://ftpmaster.internal/ubuntu groovy/main riscv64 libicu66 riscv64 66.1-2ubuntu2 [8406 kB] Get:17 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxml2 riscv64 2.9.10+dfsg-5 [559 kB] Get:18 http://ftpmaster.internal/ubuntu groovy/main riscv64 ucf all 3.0038+nmu1 [51.6 kB] Get:19 http://ftpmaster.internal/ubuntu groovy/main riscv64 gettext-base riscv64 0.19.8.1-10build1 [47.4 kB] Get:20 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxau6 riscv64 1:1.0.9-0ubuntu1 [6788 B] Get:21 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxdmcp6 riscv64 1:1.1.3-0ubuntu1 [9952 B] Get:22 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxcb1 riscv64 1.14-2 [37.9 kB] Get:23 http://ftpmaster.internal/ubuntu groovy/main riscv64 libx11-data all 2:1.6.9-2ubuntu1 [113 kB] Get:24 http://ftpmaster.internal/ubuntu groovy/main riscv64 libx11-6 riscv64 2:1.6.9-2ubuntu1 [537 kB] Get:25 http://ftpmaster.internal/ubuntu groovy/main riscv64 libxext6 riscv64 2:1.3.4-0ubuntu1 [25.6 kB] Get:26 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsigsegv2 riscv64 2.12-2 [13.0 kB] Get:27 http://ftpmaster.internal/ubuntu groovy/main riscv64 m4 riscv64 1.4.18-4 [188 kB] Get:28 http://ftpmaster.internal/ubuntu groovy/main riscv64 autoconf all 2.69-11.1 [321 kB] Get:29 http://ftpmaster.internal/ubuntu groovy/main riscv64 autotools-dev all 20180224.1 [39.6 kB] Get:30 http://ftpmaster.internal/ubuntu groovy/main riscv64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:31 http://ftpmaster.internal/ubuntu groovy/main riscv64 autopoint all 0.19.8.1-10build1 [412 kB] Get:32 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtool all 2.4.6-14 [161 kB] Get:33 http://ftpmaster.internal/ubuntu groovy/main riscv64 dh-autoreconf all 19 [16.1 kB] Get:34 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libdebhelper-perl all 13ubuntu1 [62.5 kB] Get:35 http://ftpmaster.internal/ubuntu groovy/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:36 http://ftpmaster.internal/ubuntu groovy/main riscv64 libsub-override-perl all 0.09-2 [9532 B] Get:37 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 libfile-stripnondeterminism-perl all 1.8.0-1 [16.2 kB] Get:38 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 dh-strip-nondeterminism all 1.8.0-1 [5228 B] Get:39 http://ftpmaster.internal/ubuntu groovy/main riscv64 dwz riscv64 0.13-5 [147 kB] Get:40 http://ftpmaster.internal/ubuntu groovy/main riscv64 libcroco3 riscv64 0.6.13-1 [71.1 kB] Get:41 http://ftpmaster.internal/ubuntu groovy/main riscv64 gettext riscv64 0.19.8.1-10build1 [844 kB] Get:42 http://ftpmaster.internal/ubuntu groovy/main riscv64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:43 http://ftpmaster.internal/ubuntu groovy/main riscv64 po-debconf all 1.0.21 [233 kB] Get:44 http://ftpmaster.internal/ubuntu groovy-proposed/main riscv64 debhelper all 13ubuntu1 [877 kB] Get:45 http://ftpmaster.internal/ubuntu groovy/universe riscv64 libxapian30 riscv64 1.4.14-2 [631 kB] Get:46 http://ftpmaster.internal/ubuntu groovy/universe riscv64 doxygen riscv64 1.8.17-0ubuntu2 [3906 kB] Get:47 http://ftpmaster.internal/ubuntu groovy/main riscv64 libfreetype6 riscv64 2.10.1-2 [313 kB] Get:48 http://ftpmaster.internal/ubuntu groovy/main riscv64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:49 http://ftpmaster.internal/ubuntu groovy/main riscv64 fontconfig-config all 2.13.1-2ubuntu3 [28.8 kB] Get:50 http://ftpmaster.internal/ubuntu groovy/main riscv64 libfontconfig1 riscv64 2.13.1-2ubuntu3 [104 kB] Get:51 http://ftpmaster.internal/ubuntu groovy/main riscv64 fontconfig riscv64 2.13.1-2ubuntu3 [169 kB] Get:52 http://ftpmaster.internal/ubuntu groovy/universe riscv64 libann0 riscv64 1.1.2+doc-7build1 [25.5 kB] Get:53 http://ftpmaster.internal/ubuntu groovy/universe riscv64 libcdt5 riscv64 2.42.2-3build2 [16.7 kB] Get:54 http://ftpmaster.internal/ubuntu groovy/universe riscv64 libcgraph6 riscv64 2.42.2-3build2 [35.1 kB] Get:55 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjpeg-turbo8 riscv64 2.0.3-0ubuntu1 [101 kB] Get:56 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjpeg8 riscv64 8c-2ubuntu8 [2224 B] Get:57 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjbig0 riscv64 2.1-3.1build1 [25.7 kB] Get:58 http://ftpmaster.internal/ubuntu groovy/main riscv64 libwebp6 riscv64 0.6.1-2 [150 kB] Get:59 http://ftpmaster.internal/ubuntu groovy/main riscv64 libtiff5 riscv64 4.1.0+git191117-2build1 [147 kB] Get:60 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[12.1 kB] Get:89 http://ftpmaster.internal/ubuntu groovy/universe riscv64 libargtable2-docs all 13-1 [2618 kB] Get:90 http://ftpmaster.internal/ubuntu groovy/universe riscv64 libargtable2-dev riscv64 13-1 [63.0 kB] Get:91 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjs-jquery all 3.3.1~dfsg-3 [329 kB] Get:92 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjs-underscore all 1.9.1~dfsg-1 [98.6 kB] Get:93 http://ftpmaster.internal/ubuntu groovy/main riscv64 libjs-sphinxdoc all 1.8.5-7ubuntu3 [97.1 kB] Get:94 http://ftpmaster.internal/ubuntu groovy/main riscv64 sphinx-common all 1.8.5-7ubuntu3 [491 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 32.0 MB in 7s (4664 kB/s) Selecting previously unselected package libbsd0:riscv64. (Reading database ... 9817 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_riscv64.deb ... Unpacking libbsd0:riscv64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu3_riscv64.deb ... Unpacking bsdmainutils (11.1.2ubuntu3) ... Selecting previously unselected package libuchardet0:riscv64. Preparing to unpack .../02-libuchardet0_0.0.6-3build1_riscv64.deb ... Unpacking libuchardet0:riscv64 (0.0.6-3build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4build1_riscv64.deb ... Unpacking groff-base (1.22.4-4build1) ... Selecting previously unselected package libpipeline1:riscv64. Preparing to unpack .../04-libpipeline1_1.5.2-2build1_riscv64.deb ... Unpacking libpipeline1:riscv64 (1.5.2-2build1) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_riscv64.deb ... 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Setting up liblab-gamut1:riscv64 (2.42.2-3build2) ... Setting up x11-common (1:7.7+19ubuntu14) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:riscv64 (1:5.38-4) ... Setting up gettext-base (0.19.8.1-10build1) ... Setting up libargtable2-docs (13-1) ... Setting up file (1:5.38-4) ... Setting up libjbig0:riscv64 (2.1-3.1build1) ... Setting up tzdata (2019c-3ubuntu1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Apr 27 21:08:08 UTC 2020. Universal Time is now: Mon Apr 27 21:08:08 UTC 2020. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libgts-0.7-5:riscv64 (0.7.6+darcs121130-4) ... Setting up autotools-dev (20180224.1) ... Setting up doxygen (1.8.17-0ubuntu2) ... Setting up libfreetype6:riscv64 (2.10.1-2) ... Setting up libx11-data (2:1.6.9-2ubuntu1) ... Setting up libpathplan4:riscv64 (2.42.2-3build2) ... Setting up libann0 (1.1.2+doc-7build1) ... Setting up libsigsegv2:riscv64 (2.12-2) ... Setting up libfribidi0:riscv64 (1.0.8-2) ... Setting up autopoint (0.19.8.1-10build1) ... Setting up libwebp6:riscv64 (0.6.1-2) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libjpeg-turbo8:riscv64 (2.0.3-0ubuntu1) ... Setting up libltdl7:riscv64 (2.4.6-14) ... Setting up libuchardet0:riscv64 (0.0.6-3build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libharfbuzz0b:riscv64 (2.6.4-1ubuntu4) ... Setting up libthai-data (0.1.28-3) ... Setting up libcdt5:riscv64 (2.42.2-3build2) ... Setting up libcgraph6:riscv64 (2.42.2-3build2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libbsd0:riscv64 (0.10.0-1) ... Setting up libelf1:riscv64 (0.176-1.1build1) ... Setting up libargtable2-0 (13-1) ... Setting up libjs-underscore (1.9.1~dfsg-1) ... Setting up libjpeg8:riscv64 (8c-2ubuntu8) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up libice6:riscv64 (2:1.0.10-0ubuntu1) ... Setting up libxdmcp6:riscv64 (1:1.1.3-0ubuntu1) ... Setting up libxcb1:riscv64 (1.14-2) ... Setting up libtool (2.4.6-14) ... Setting up libxcb-render0:riscv64 (1.14-2) ... Setting up fontconfig-config (2.13.1-2ubuntu3) ... Setting up libicu66:riscv64 (66.1-2ubuntu2) ... Setting up m4 (1.4.18-4) ... Setting up libxcb-shm0:riscv64 (1.14-2) ... Setting up libthai0:riscv64 (0.1.28-3) ... Setting up bsdmainutils (11.1.2ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libargtable2-dev (13-1) ... Setting up libjs-sphinxdoc (1.8.5-7ubuntu3) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up libgvpr2:riscv64 (2.42.2-3build2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4build1) ... Setting up libx11-6:riscv64 (2:1.6.9-2ubuntu1) ... Setting up libtiff5:riscv64 (4.1.0+git191117-2build1) ... Setting up libfontconfig1:riscv64 (2.13.1-2ubuntu3) ... Setting up libsm6:riscv64 (2:1.2.3-1) ... Setting up libxml2:riscv64 (2.9.10+dfsg-5) ... Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up fontconfig (2.13.1-2ubuntu3) ... Regenerating fonts cache... done. Setting up libxpm4:riscv64 (1:3.5.12-1) ... Setting up libxrender1:riscv64 (1:0.9.10-1) ... Setting up libpango-1.0-0:riscv64 (1.44.7-2ubuntu4) ... Setting up libxext6:riscv64 (2:1.3.4-0ubuntu1) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:riscv64 (1.16.0-4ubuntu1) ... Setting up sphinx-common (1.8.5-7ubuntu3) ... Setting up libgd3:riscv64 (2.2.5-5.2ubuntu2) ... Setting up libcroco3:riscv64 (0.6.13-1) ... Setting up libxt6:riscv64 (1:1.1.5-1) ... Setting up libpangoft2-1.0-0:riscv64 (1.44.7-2ubuntu4) ... Setting up libpangocairo-1.0-0:riscv64 (1.44.7-2ubuntu4) ... Setting up libxmu6:riscv64 (2:1.1.3-0ubuntu1) ... Setting up gettext (0.19.8.1-10build1) ... Setting up libxaw7:riscv64 (2:1.0.13-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgvc6 (2.42.2-3build2) ... Setting up graphviz (2.42.2-3build2) ... Setting up po-debconf (1.0.21) ... Setting up dh-autoreconf (19) ... Setting up debhelper (13ubuntu1) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.31-0ubuntu9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.3.0-13-generic #14+riscv64.5-Ubuntu SMP Wed Nov 13 20:10:41 UTC 2019 riscv64 (riscv64) Toolchain package versions: binutils_2.34-6ubuntu1 dpkg-dev_1.19.7ubuntu3 g++-9_9.3.0-11ubuntu2 gcc-9_9.3.0-11ubuntu2 libc6-dev_2.31-0ubuntu9 libstdc++-9-dev_9.3.0-11ubuntu2 libstdc++6_10-20200411-0ubuntu1 linux-libc-dev_5.4.0-24.28 Package versions: adduser_3.118ubuntu2 advancecomp_2.1-2.1build1 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10build1 autotools-dev_20180224.1 base-files_11ubuntu6 base-passwd_3.5.47 bash_5.0-6ubuntu1 binutils_2.34-6ubuntu1 binutils-common_2.34-6ubuntu1 binutils-riscv64-linux-gnu_2.34-6ubuntu1 bsdmainutils_11.1.2ubuntu3 bsdutils_1:2.34-0.1ubuntu9 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110ubuntu1 coreutils_8.30-3ubuntu2 cpp_4:9.3.0-1ubuntu2 cpp-9_9.3.0-11ubuntu2 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 doxygen_1.8.17-0ubuntu2 dpkg_1.19.7ubuntu3 dpkg-dev_1.19.7ubuntu3 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 file_1:5.38-4 findutils_4.7.0-1ubuntu1 fontconfig_2.13.1-2ubuntu3 fontconfig-config_2.13.1-2ubuntu3 fonts-dejavu-core_2.37-1 g++_4:9.3.0-1ubuntu2 g++-9_9.3.0-11ubuntu2 gcc_4:9.3.0-1ubuntu2 gcc-10-base_10-20200411-0ubuntu1 gcc-8-base_8.4.0-3ubuntu2 gcc-9_9.3.0-11ubuntu2 gcc-9-base_9.3.0-11ubuntu2 gettext_0.19.8.1-10build1 gettext-base_0.19.8.1-10build1 gpg_2.2.19-3ubuntu2 gpg-agent_2.2.19-3ubuntu2 gpgconf_2.2.19-3ubuntu2 gpgv_2.2.19-3ubuntu2 graphviz_2.42.2-3build2 grep_3.4-1 groff-base_1.22.4-4build1 gzip_1.10-0ubuntu4 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libann0_1.1.2+doc-7build1 libapt-pkg6.0_2.0.2 libarchive-zip-perl_1.68-1 libargtable2-0_13-1 libargtable2-dev_13-1 libargtable2-docs_13-1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200411-0ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu6 libaudit1_1:2.8.5-2ubuntu6 libbinutils_2.34-6ubuntu1 libblkid1_2.34-0.1ubuntu9 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.31-0ubuntu9 libc-dev-bin_2.31-0ubuntu9 libc6_2.31-0ubuntu9 libc6-dev_2.31-0ubuntu9 libcairo2_1.16.0-4ubuntu1 libcap-ng0_0.7.9-2.1build1 libcc1-0_10-20200411-0ubuntu1 libcdt5_2.42.2-3build2 libcgraph6_2.42.2-3build2 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10ubuntu4 libcrypt1_1:4.4.10-10ubuntu4 libctf-nobfd0_2.34-6ubuntu1 libctf0_2.34-6ubuntu1 libdatrie1_0.2.12-3 libdb5.3_5.3.28+dfsg1-0.6ubuntu2 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_13ubuntu1 libdpkg-perl_1.19.7ubuntu3 libelf1_0.176-1.1build1 libexpat1_2.2.9-1build1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.0-1 libfontconfig1_2.13.1-2ubuntu3 libfreetype6_2.10.1-2 libfribidi0_1.0.8-2 libgcc-9-dev_9.3.0-11ubuntu2 libgcc-s1_10-20200411-0ubuntu1 libgcc1_1:10-20200411-0ubuntu1 libgcrypt20_1.8.5-5ubuntu1 libgd3_2.2.5-5.2ubuntu2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.2-1~fakesync1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2ubuntu1 libgomp1_10-20200411-0ubuntu1 libgpg-error0_1.37-1 libgpm2_1.20.7-6 libgraphite2-3_1.3.14-1 libgts-0.7-5_0.7.6+darcs121130-4 libgvc6_2.42.2-3build2 libgvpr2_2.42.2-3build2 libharfbuzz0b_2.6.4-1ubuntu4 libhogweed5_3.5.1+really3.5.1-2 libice6_2:1.0.10-0ubuntu1 libicu66_66.1-2ubuntu2 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libjbig0_2.1-3.1build1 libjpeg-turbo8_2.0.3-0ubuntu1 libjpeg8_8c-2ubuntu8 libjs-jquery_3.3.1~dfsg-3 libjs-sphinxdoc_1.8.5-7ubuntu3 libjs-underscore_1.9.1~dfsg-1 liblab-gamut1_2.42.2-3build2 liblocale-gettext-perl_1.07-4 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 libltdl7_2.4.6-14 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu9 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpango-1.0-0_1.44.7-2ubuntu4 libpangocairo-1.0-0_1.44.7-2ubuntu4 libpangoft2-1.0-0_1.44.7-2ubuntu4 libpathplan4_2.42.2-3build2 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12build1 libperl5.30_5.30.0-9build1 libpipeline1_1.5.2-2build1 libpixman-1-0_0.38.4-0ubuntu1 libpng16-16_1.6.37-2 libreadline8_8.0-4 libselinux1_3.0-1build2 libsemanage-common_3.0-1build2 libsemanage1_3.0-1build2 libsepol1_3.0-1 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1ubuntu9 libsqlite3-0_3.31.1-4 libss2_1.45.5-2ubuntu1 libssl1.1_1.1.1f-1ubuntu2 libstdc++-9-dev_9.3.0-11ubuntu2 libstdc++6_10-20200411-0ubuntu1 libsub-override-perl_0.09-2 libsystemd0_245.4-4ubuntu3 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libthai-data_0.1.28-3 libthai0_0.1.28-3 libtiff5_4.1.0+git191117-2build1 libtinfo6_6.2-1 libtool_2.4.6-14 libuchardet0_0.0.6-3build1 libudev1_245.4-4ubuntu3 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu9 libwebp6_0.6.1-2 libx11-6_2:1.6.9-2ubuntu1 libx11-data_2:1.6.9-2ubuntu1 libxapian30_1.4.14-2 libxau6_1:1.0.9-0ubuntu1 libxaw7_2:1.0.13-1 libxcb-render0_1.14-2 libxcb-shm0_1.14-2 libxcb1_1.14-2 libxdmcp6_1:1.1.3-0ubuntu1 libxext6_2:1.3.4-0ubuntu1 libxml2_2.9.10+dfsg-5 libxmu6_2:1.1.3-0ubuntu1 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-24.28 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu5 logsave_1.45.5-2ubuntu1 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3.0 (quilt) Source: clustalo Binary: clustalo, libclustalo-dev, libclustalo-doc Architecture: any all Version: 1.2.4-5 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: http://www.clustal.org/omega/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/clustalo Vcs-Git: https://salsa.debian.org/med-team/clustalo.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), libargtable2-dev, doxygen, graphviz, sphinx-common Package-List: clustalo deb science optional arch=any libclustalo-dev deb libdevel optional arch=any libclustalo-doc deb doc optional arch=all Checksums-Sha1: 9ff2c88df0f488de61f80d997198700407ac6c04 1170516 clustalo_1.2.4.orig.tar.gz ce3bb7bf60263c99298e70eb87f9bbaaae1566e6 7664 clustalo_1.2.4-5.debian.tar.xz Checksums-Sha256: 8683d2286d663a46412c12a0c789e755e7fd77088fb3bc0342bb71667f05a3ee 1170516 clustalo_1.2.4.orig.tar.gz e542dc278aae5f0c13586efff927685794fc48226c2acfe1744271f0bd3b7f47 7664 clustalo_1.2.4-5.debian.tar.xz Files: 6c0459f4c463a30e942ce7e0efc91422 1170516 clustalo_1.2.4.orig.tar.gz 4c25297a638e5688dd0387d9e654cee8 7664 clustalo_1.2.4-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl6VgTgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF4CA//V1vjueAfkcQzJFfrBKQ55e+lB27ffGy2 4F3etnnVU/6ueGsiEU+we8yUZyrgsUd5IAHmhySCH64lXQ790M+Ctc79hdCt0h4N 3/L2hX6U+Bdum8KY7Hle+wRXVhNfsNSjDL0I3laOGKogmzzvH5WJSdd8FqAAtd30 XmsHmJWKhNJpzvt1iHwKUmQIiaS1pbS9vn8T0qd0qC+k4RAVB+tvWSdqkv2yNp4T 2+A1DizrN0AMoPRTnAyb4r7weESGvzyRcDlEPEgnRC1jVbplf3OieeQtbGb5QpGG PuWd0V2pT+xshPnim41W8cYTp56FfTxiR96z1fFAyP9HnPG4bWuXW1m9Sgyi/Z1z Q5lEXjl582PIfZjyEai3FHhRVnE7qwNWsB+6PfXwBWN2flvGJ0damz8NM4srzz0P aigImg8tUJ5ca7f6EeOh1jVy8pvD/EEYtfZnCjrIARu7ZdYWWCRPfCo7WVt4qOI+ YKSU4wmbeIJ4JXK2/nnO3wC9liWl0xHMOTQ3SJCPejO4iY70KqvPFpuCDuKlCF75 kLZSZ05JRwEJlecg/JkZ1vtu3zXMViDkj6/5I/cUSkU/VAeJ7q8aSInYnw9QR8mg dryN7A0e5CTkT4hxTWs+M4nJPmdH1IJWRxgaGUel3P83BnYywNxLTZN3OlMopytD kDSaHKN3HRY= =bWC3 -----END PGP SIGNATURE----- gpgv: Signature made Tue Apr 14 09:24:08 2020 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clustalo_1.2.4-5.dsc dpkg-source: info: extracting clustalo in /<> dpkg-source: info: unpacking clustalo_1.2.4.orig.tar.gz dpkg-source: info: unpacking clustalo_1.2.4-5.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-19213541 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-19213541 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-19213541 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package clustalo dpkg-buildpackage: info: source version 1.2.4-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f _configs.sed rm -rf doc make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:133: installing './compile' configure.ac:115: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=riscv64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/riscv64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode configure: Welcome to Clustal Omega - version 1.2.4 (AndreaGiacomo) +NMMMMMMMMMS= MMMMM? :MMMMM8 IMMMMS MMMMM, ~MMMMN ,MMMMM =MMMMM MMMMM ?MMMMM +MMMMM MMMMMS MMMMM MMMMM MMMMM: MMMMM MMMMM+ MMMMM MMMMM~ MMMMM MMMMM MMMMMZ MMMMM MMMMM ,MMMMZ MMMM8 MMMM+ MMMMS MMMM, MMMMO MMMM ,N SMMM MMM8 +8 ,M7 M+ M+ :M8 ,MMMMMMMMMMMMI MMMMMMMMMMMM8 ,MMMMMMMMMMMM8 MMMMMMMMMMMM8 ,MMMMMMMMMMMMN MMMMMMMMMMMM8 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking whether make sets $(MAKE)... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert riscv64-unknown-linux-gnu file names to riscv64-unknown-linux-gnu format... func_convert_file_noop checking how to convert riscv64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to run the C++ preprocessor... g++ -E checking for ANSI C header files... (cached) yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for memory.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking for inline... inline checking for log in -lm... yes checking for log2 in -lm... yes checking argtable2.h usability... yes checking argtable2.h presence... yes checking for argtable2.h... yes checking for arg_parse in -largtable2... yes checking for OpenMP flag of C compiler... -fopenmp checking whether byte ordering is bigendian... no checking for ntohs... yes checking for ntohl... yes checking for ntons... no checking for ntonl... no checking size of unsigned short... 2 checking size of unsigned int... 4 checking size of unsigned long... 8 checking size of unsigned long long... 8 checking for stroul... no checking for strtoull... yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for off_t... yes checking size of fpos_t... 16 checking if malloc debugging is wanted... no checking whether to build with debug information... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating clustalo.pc config.status: creating Doxyfile config.status: creating src/clustal/Makefile config.status: creating src/hhalign/Makefile config.status: creating src/kmpp/Makefile config.status: creating src/squid/Makefile config.status: creating src/config.h config.status: executing src/clustal-omega-config.h commands config.status: creating src/clustal-omega-config.h - prefix CLUSTAL_OMEGA for src/config.h defines config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j8 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' make all-recursive make[3]: Entering directory '/<>/src' Making all in hhalign make[4]: Entering directory '/<>/src/hhalign' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o hhalign.lo hhalign.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hhalign.cpp -fPIC -DPIC -o .libs/hhalign.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hhalign.cpp -o hhalign.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=link g++ -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libhhalign.la hhalign.lo -largtable2 -lm libtool: link: ar cr .libs/libhhalign.a .libs/hhalign.o libtool: link: ranlib .libs/libhhalign.a libtool: link: ( cd ".libs" && rm -f "libhhalign.la" && ln -s "../libhhalign.la" "libhhalign.la" ) make[4]: Leaving directory '/<>/src/hhalign' Making all in squid make[4]: Entering directory '/<>/src/squid' /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o a2m.lo a2m.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o aligneval.lo aligneval.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o alignio.lo alignio.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o clustal.lo clustal.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o cluster.lo cluster.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 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-Werror=format-security -c -o tree.lo tree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c symmatrix.c -fPIC -DPIC -o .libs/symmatrix.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c mbed.c -o mbed.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c tree.c -fPIC -DPIC -o .libs/tree.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o util.lo util.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c muscle_tree.c -o muscle_tree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.c -fPIC -DPIC -o .libs/util.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c tree.c -o tree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c symmatrix.c -o symmatrix.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.c -o util.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o weights.lo weights.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.c -o seq.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c weights.c -fPIC -DPIC -o .libs/weights.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hhalign_wrapper.c -o hhalign_wrapper.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c weights.c -o weights.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=link gcc -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libclustal.la hhalign_wrapper.lo ktuple_pair.lo list.lo log.lo muscle_upgma.lo muscle_tree.lo mbed.lo pair_dist.lo progress.lo seq.lo symmatrix.lo tree.lo util.lo weights.lo -largtable2 -lm libtool: link: ar cr .libs/libclustal.a .libs/hhalign_wrapper.o .libs/ktuple_pair.o .libs/list.o .libs/log.o .libs/muscle_upgma.o .libs/muscle_tree.o .libs/mbed.o .libs/pair_dist.o .libs/progress.o .libs/seq.o .libs/symmatrix.o .libs/tree.o .libs/util.o .libs/weights.o libtool: link: ranlib .libs/libclustal.a libtool: link: ( cd ".libs" && rm -f "libclustal.la" && ln -s "../libclustal.la" "libclustal.la" ) make[4]: Leaving directory '/<>/src/clustal' make[4]: Entering directory '/<>/src' g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mymain.o mymain.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o clustal-omega.lo clustal-omega.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal-omega.c -fPIC -DPIC -o .libs/clustal-omega.o clustal-omega.c: In function ‘PrintLongVersion’: clustal-omega.c:152:49: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 152 | PACKAGE_VERSION, PACKAGE_CODENAME, __DATE__); | ^~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal-omega.c -o clustal-omega.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -static -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libclustalo.la -rpath /usr/lib/riscv64-linux-gnu clustal-omega.lo clustal/libclustal.la hhalign/libhhalign.la squid/libsquid.la kmpp/libkmpp.la -largtable2 -lm libtool: link: (cd .libs/libclustalo.lax/libclustal.a && ar x "/<>/src/clustal/.libs/libclustal.a") libtool: link: (cd .libs/libclustalo.lax/libhhalign.a && ar x "/<>/src/hhalign/.libs/libhhalign.a") libtool: link: (cd .libs/libclustalo.lax/libsquid.a && ar x "/<>/src/squid/.libs/libsquid.a") libtool: link: (cd .libs/libclustalo.lax/libkmpp.a && ar x "/<>/src/kmpp/.libs/libkmpp.a") libtool: link: ar cr .libs/libclustalo.a clustal-omega.o .libs/libclustalo.lax/libclustal.a/hhalign_wrapper.o .libs/libclustalo.lax/libclustal.a/ktuple_pair.o .libs/libclustalo.lax/libclustal.a/list.o .libs/libclustalo.lax/libclustal.a/log.o .libs/libclustalo.lax/libclustal.a/mbed.o .libs/libclustalo.lax/libclustal.a/muscle_tree.o .libs/libclustalo.lax/libclustal.a/muscle_upgma.o .libs/libclustalo.lax/libclustal.a/pair_dist.o .libs/libclustalo.lax/libclustal.a/progress.o .libs/libclustalo.lax/libclustal.a/seq.o .libs/libclustalo.lax/libclustal.a/symmatrix.o .libs/libclustalo.lax/libclustal.a/tree.o .libs/libclustalo.lax/libclustal.a/util.o .libs/libclustalo.lax/libclustal.a/weights.o .libs/libclustalo.lax/libhhalign.a/hhalign.o .libs/libclustalo.lax/libsquid.a/a2m.o .libs/libclustalo.lax/libsquid.a/aligneval.o .libs/libclustalo.lax/libsquid.a/alignio.o .libs/libclustalo.lax/libsquid.a/clustal.o .libs/libclustalo.lax/libsquid.a/cluster.o .libs/libclustalo.lax/libsquid.a/dayhoff.o .libs/libclustalo.lax/libsquid.a/eps.o .libs/libclustalo.lax/libsquid.a/file.o .libs/libclustalo.lax/libsquid.a/getopt.o .libs/libclustalo.lax/libsquid.a/gki.o .libs/libclustalo.lax/libsquid.a/gsi.o .libs/libclustalo.lax/libsquid.a/gsi64.o .libs/libclustalo.lax/libsquid.a/hsregex.o .libs/libclustalo.lax/libsquid.a/iupac.o .libs/libclustalo.lax/libsquid.a/msa.o .libs/libclustalo.lax/libsquid.a/msf.o .libs/libclustalo.lax/libsquid.a/phylip.o .libs/libclustalo.lax/libsquid.a/revcomp.o .libs/libclustalo.lax/libsquid.a/rk.o .libs/libclustalo.lax/libsquid.a/selex.o .libs/libclustalo.lax/libsquid.a/seqencode.o .libs/libclustalo.lax/libsquid.a/shuffle.o .libs/libclustalo.lax/libsquid.a/sqerror.o .libs/libclustalo.lax/libsquid.a/sqio.o .libs/libclustalo.lax/libsquid.a/squidcore.o .libs/libclustalo.lax/libsquid.a/sre_ctype.o .libs/libclustalo.lax/libsquid.a/sre_math.o .libs/libclustalo.lax/libsquid.a/sre_random.o .libs/libclustalo.lax/libsquid.a/sre_string.o .libs/libclustalo.lax/libsquid.a/ssi.o .libs/libclustalo.lax/libsquid.a/stack.o .libs/libclustalo.lax/libsquid.a/stockholm.o .libs/libclustalo.lax/libsquid.a/stopwatch.o .libs/libclustalo.lax/libsquid.a/translate.o .libs/libclustalo.lax/libsquid.a/types.o .libs/libclustalo.lax/libsquid.a/vectorops.o .libs/libclustalo.lax/libsquid.a/weight.o .libs/libclustalo.lax/libkmpp.a/KMeans.o .libs/libclustalo.lax/libkmpp.a/KmTree.o .libs/libclustalo.lax/libkmpp.a/KmUtils.o libtool: link: ranlib .libs/libclustalo.a libtool: link: rm -fr .libs/libclustalo.lax libtool: link: ( cd ".libs" && rm -f "libclustalo.la" && ln -s "../libclustalo.la" "libclustalo.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o clustalo main.o mymain.o libclustalo.la -largtable2 -lm libtool: link: g++ -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-z -Wl,now -o clustalo main.o mymain.o ./.libs/libclustalo.a /usr/lib/riscv64-linux-gnu/libargtable2.so -lm -fopenmp /usr/bin/ld: ./.libs/libclustalo.a(clustal-omega.o): in function `AlnToHHMFile': ./src/clustal-omega.c:393: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test-arch make[1]: Entering directory '/<>' dh_auto_test -a make -j8 check VERBOSE=1 make[2]: Entering directory '/<>' Making check in src make[3]: Entering directory '/<>/src' Making check in hhalign make[4]: Entering directory '/<>/src/hhalign' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/src/hhalign' Making check in squid make[4]: Entering directory '/<>/src/squid' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/src/squid' Making check in kmpp make[4]: Entering directory '/<>/src/kmpp' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/src/kmpp' Making check in clustal make[4]: Entering directory '/<>/src/clustal' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/<>/src/clustal' make[4]: Entering directory '/<>/src' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' # Run additional test from python-biopython package to verify that # this will work as well src/clustalo -i debian/tests/biopython_testdata/f002 --guidetree-out temp_test.dnd -o temp_test.aln --outfmt clustal --force rm temp_test.aln temp_test.dnd make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in src make[3]: Entering directory '/<>/src' Making install in hhalign make[4]: Entering directory '/<>/src/hhalign' make[5]: Entering directory '/<>/src/hhalign' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/hhalign' /usr/bin/install -c -m 644 general.h hhfunc.h '/<>/debian/tmp/usr/include/clustalo/hhalign' make[5]: Leaving directory '/<>/src/hhalign' make[4]: Leaving directory '/<>/src/hhalign' Making install in squid make[4]: Entering directory '/<>/src/squid' make[5]: Entering directory '/<>/src/squid' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/squid' /usr/bin/install -c -m 644 gki.h gsi64.h msa.h rk.h squid.h stopwatch.h sqfuncs.h sre_random.h ssi.h stockholm.h vectorops.h version.h '/<>/debian/tmp/usr/include/clustalo/squid' make[5]: Leaving directory '/<>/src/squid' make[4]: Leaving directory '/<>/src/squid' Making install in kmpp make[4]: Entering directory '/<>/src/kmpp' make[5]: Entering directory '/<>/src/kmpp' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/src/kmpp' make[4]: Leaving directory '/<>/src/kmpp' Making install in clustal make[4]: Entering directory '/<>/src/clustal' make[5]: Entering directory '/<>/src/clustal' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/clustal' /usr/bin/install -c -m 644 hhalign_wrapper.h ktuple_pair.h log.h mbed.h muscle_tree.h pair_dist.h progress.h seq.h symmatrix.h tree.h util.h weights.h '/<>/debian/tmp/usr/include/clustalo/clustal' make[5]: Leaving directory '/<>/src/clustal' make[4]: Leaving directory '/<>/src/clustal' make[4]: Entering directory '/<>/src' make[5]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/riscv64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libclustalo.la '/<>/debian/tmp/usr/lib/riscv64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libclustalo.lai /<>/debian/tmp/usr/lib/riscv64-linux-gnu/libclustalo.la libtool: install: /usr/bin/install -c .libs/libclustalo.a /<>/debian/tmp/usr/lib/riscv64-linux-gnu/libclustalo.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/riscv64-linux-gnu/libclustalo.a libtool: install: ranlib /<>/debian/tmp/usr/lib/riscv64-linux-gnu/libclustalo.a libtool: warning: remember to run 'libtool --finish /usr/lib/riscv64-linux-gnu' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c clustalo '/<>/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c clustalo /<>/debian/tmp/usr/bin/clustalo /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/' /usr/bin/install -c -m 644 clustal-omega-config.h clustal-omega.h '/<>/debian/tmp/usr/include/clustalo/' make[5]: Leaving directory '/<>/src' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/clustal-omega' /usr/bin/install -c -m 644 README '/<>/debian/tmp/usr/share/doc/clustal-omega' /bin/mkdir -p '/<>/debian/tmp/usr/lib/riscv64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 clustalo.pc '/<>/debian/tmp/usr/lib/riscv64-linux-gnu/pkgconfig' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' rm -rf debian/tmp/usr/lib/pkgconfig rm -f debian/tmp/usr/lib/*/libclustalo.la mv debian/tmp/usr/include debian/libclustalo-dev/usr mv debian/tmp/usr/lib debian/libclustalo-dev/usr mv debian/tmp/usr/bin debian/clustalo/usr make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_missing: warning: usr/share/doc/clustal-omega/README exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: clustalo (0), libclustalo-dev (0), libclustalo-doc (0) * dh_installdocs: clustalo (1), libclustalo-dev (0), libclustalo-doc (0) * dh_installexamples: clustalo (2), libclustalo-dev (0), libclustalo-doc (0) * dh_installman: clustalo (1), libclustalo-dev (0), libclustalo-doc (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libclustalo-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing libclustalo-dev (in debian/libclustalo-dev); do_strip: , oemstrip: pkgstriptranslations: processing clustalo (in debian/clustalo); do_strip: , oemstrip: pkgstriptranslations: processing clustalo-dbgsym (in debian/.debhelper/clustalo/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalo/DEBIAN/control, package clustalo, directory debian/clustalo pkgstripfiles: Truncating usr/share/doc/clustalo/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 8 cpus) for package clustalo ... pkgstripfiles: No PNG files. dpkg-deb: building package 'clustalo' in '../clustalo_1.2.4-5_riscv64.deb'. pkgstripfiles: processing control file: debian/.debhelper/clustalo/dbgsym-root/DEBIAN/control, package clustalo-dbgsym, directory debian/.debhelper/clustalo/dbgsym-root dpkg-deb: building package 'clustalo-dbgsym' in 'debian/.debhelper/scratch-space/build-clustalo/clustalo-dbgsym_1.2.4-5_riscv64.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " Renaming clustalo-dbgsym_1.2.4-5_riscv64.deb to clustalo-dbgsym_1.2.4-5_riscv64.ddeb pkgstripfiles: processing control file: debian/libclustalo-dev/DEBIAN/control, package libclustalo-dev, directory debian/libclustalo-dev Searching for duplicated docs in dependency clustalo... symlinking changelog.Debian.gz in libclustalo-dev to file in clustalo pkgstripfiles: Running PNG optimization (using 8 cpus) for package libclustalo-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclustalo-dev' in '../libclustalo-dev_1.2.4-5_riscv64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clustalo_1.2.4-5_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-04-27T21:23:37Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalo_1.2.4-5_riscv64.changes: --------------------------------- Format: 1.8 Date: Tue, 14 Apr 2020 11:19:44 +0200 Source: clustalo Binary: clustalo libclustalo-dev Architecture: riscv64 Version: 1.2.4-5 Distribution: groovy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: clustalo - General-purpose multiple sequence alignment program for proteins libclustalo-dev - Library to embed Clustal Omega Changes: clustalo (1.2.4-5) unstable; urgency=medium . * Run example test from BioPython that seems to fail on mipsel (see bug #956324) * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Remove obsolete field Contact from debian/upstream/metadata (already present in machine-readable debian/copyright). Checksums-Sha1: 09c34de43093391675ef953a465b205f19884469 677624 clustalo-dbgsym_1.2.4-5_riscv64.ddeb 730249cc89d15f23bcf97d4a585bd877eb4fe8d1 7085 clustalo_1.2.4-5_riscv64.buildinfo 1d468ccfea4f1fc9953206e7884673bbaf0d44be 257204 clustalo_1.2.4-5_riscv64.deb 2356eeff73699762f69c3a632fc02a53ccb0bf09 641144 libclustalo-dev_1.2.4-5_riscv64.deb Checksums-Sha256: bf21daef4a41cc1d053f8361da144e0f7c98222dff3b3c4e9e4cd20b826ab347 677624 clustalo-dbgsym_1.2.4-5_riscv64.ddeb 1a02eaad72a214a2599f40f385689208ab0366be2a8b27927e353a45e6d97c42 7085 clustalo_1.2.4-5_riscv64.buildinfo b0b0e24e7a4c07d940c3de9b1498da8f535d5bd50e93c2c2f9ffd460e9c18737 257204 clustalo_1.2.4-5_riscv64.deb e7a36e4903c8a1566b8f3e6f67332377b78194a845dcd9add156e98888a01f5f 641144 libclustalo-dev_1.2.4-5_riscv64.deb Files: 4353e1d8bdf66ae146c6ae4cb15a8535 677624 debug optional clustalo-dbgsym_1.2.4-5_riscv64.ddeb d1e94e85c432a357161493ee46e777ea 7085 science optional clustalo_1.2.4-5_riscv64.buildinfo 33abd0599d661b032507351fe4d9ad5a 257204 science optional clustalo_1.2.4-5_riscv64.deb dd9f3dbb0bd9c55ff059dc35596ff0dd 641144 libdevel optional libclustalo-dev_1.2.4-5_riscv64.deb /<>/clustalo_1.2.4-5_riscv64.changes.new could not be renamed to /<>/clustalo_1.2.4-5_riscv64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: clustalo Binary: clustalo libclustalo-dev libclustalo-doc Architecture: riscv64 Version: 1.2.4-5 Checksums-Md5: 4353e1d8bdf66ae146c6ae4cb15a8535 677624 clustalo-dbgsym_1.2.4-5_riscv64.ddeb 33abd0599d661b032507351fe4d9ad5a 257204 clustalo_1.2.4-5_riscv64.deb dd9f3dbb0bd9c55ff059dc35596ff0dd 641144 libclustalo-dev_1.2.4-5_riscv64.deb Checksums-Sha1: 09c34de43093391675ef953a465b205f19884469 677624 clustalo-dbgsym_1.2.4-5_riscv64.ddeb 1d468ccfea4f1fc9953206e7884673bbaf0d44be 257204 clustalo_1.2.4-5_riscv64.deb 2356eeff73699762f69c3a632fc02a53ccb0bf09 641144 libclustalo-dev_1.2.4-5_riscv64.deb Checksums-Sha256: bf21daef4a41cc1d053f8361da144e0f7c98222dff3b3c4e9e4cd20b826ab347 677624 clustalo-dbgsym_1.2.4-5_riscv64.ddeb b0b0e24e7a4c07d940c3de9b1498da8f535d5bd50e93c2c2f9ffd460e9c18737 257204 clustalo_1.2.4-5_riscv64.deb e7a36e4903c8a1566b8f3e6f67332377b78194a845dcd9add156e98888a01f5f 641144 libclustalo-dev_1.2.4-5_riscv64.deb Build-Origin: Ubuntu Build-Architecture: riscv64 Build-Date: Mon, 27 Apr 2020 21:23:29 +0000 Build-Path: /<> Build-Tainted-By: usr-local-has-programs Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.1-4ubuntu6), autopoint (= 0.19.8.1-10build1), autotools-dev (= 20180224.1), base-files (= 11ubuntu6), base-passwd (= 3.5.47), bash (= 5.0-6ubuntu1), binutils (= 2.34-6ubuntu1), binutils-common (= 2.34-6ubuntu1), binutils-riscv64-linux-gnu (= 2.34-6ubuntu1), bsdmainutils (= 11.1.2ubuntu3), bsdutils (= 1:2.34-0.1ubuntu9), build-essential (= 12.8ubuntu1), bzip2 (= 1.0.8-2), coreutils (= 8.30-3ubuntu2), cpp (= 4:9.3.0-1ubuntu2), cpp-9 (= 9.3.0-11ubuntu2), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13ubuntu1), debianutils (= 4.9.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.8.0-1), diffutils (= 1:3.7-3), doxygen (= 1.8.17-0ubuntu2), dpkg (= 1.19.7ubuntu3), dpkg-dev (= 1.19.7ubuntu3), dwz (= 0.13-5), file (= 1:5.38-4), findutils (= 4.7.0-1ubuntu1), fontconfig (= 2.13.1-2ubuntu3), fontconfig-config (= 2.13.1-2ubuntu3), fonts-dejavu-core (= 2.37-1), g++ (= 4:9.3.0-1ubuntu2), g++-9 (= 9.3.0-11ubuntu2), gcc (= 4:9.3.0-1ubuntu2), gcc-10-base (= 10-20200411-0ubuntu1), gcc-9 (= 9.3.0-11ubuntu2), gcc-9-base (= 9.3.0-11ubuntu2), gettext (= 0.19.8.1-10build1), gettext-base (= 0.19.8.1-10build1), graphviz (= 2.42.2-3build2), grep (= 3.4-1), groff-base (= 1.22.4-4build1), gzip (= 1.10-0ubuntu4), hostname (= 3.23), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-6), libann0 (= 1.1.2+doc-7build1), libarchive-zip-perl (= 1.68-1), libargtable2-0 (= 13-1), libargtable2-dev (= 13-1), libargtable2-docs (= 13-1), libatomic1 (= 10-20200411-0ubuntu1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2ubuntu6), libaudit1 (= 1:2.8.5-2ubuntu6), libbinutils (= 2.34-6ubuntu1), libblkid1 (= 2.34-0.1ubuntu9), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.31-0ubuntu9), libc-dev-bin (= 2.31-0ubuntu9), libc6 (= 2.31-0ubuntu9), libc6-dev (= 2.31-0ubuntu9), libcairo2 (= 1.16.0-4ubuntu1), libcap-ng0 (= 0.7.9-2.1build1), libcc1-0 (= 10-20200411-0ubuntu1), libcdt5 (= 2.42.2-3build2), libcgraph6 (= 2.42.2-3build2), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.10-10ubuntu4), libcrypt1 (= 1:4.4.10-10ubuntu4), libctf-nobfd0 (= 2.34-6ubuntu1), libctf0 (= 2.34-6ubuntu1), libdatrie1 (= 0.2.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6ubuntu2), libdebconfclient0 (= 0.251ubuntu1), libdebhelper-perl (= 13ubuntu1), libdpkg-perl (= 1.19.7ubuntu3), libelf1 (= 0.176-1.1build1), libexpat1 (= 2.2.9-1build1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.8.0-1), libfontconfig1 (= 2.13.1-2ubuntu3), libfreetype6 (= 2.10.1-2), libfribidi0 (= 1.0.8-2), libgcc-9-dev (= 9.3.0-11ubuntu2), libgcc-s1 (= 10-20200411-0ubuntu1), libgcrypt20 (= 1.8.5-5ubuntu1), libgd3 (= 2.2.5-5.2ubuntu2), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.2-1~fakesync1), libgmp10 (= 2:6.2.0+dfsg-4), libgomp1 (= 10-20200411-0ubuntu1), libgpg-error0 (= 1.37-1), libgraphite2-3 (= 1.3.14-1), libgts-0.7-5 (= 0.7.6+darcs121130-4), libgvc6 (= 2.42.2-3build2), libgvpr2 (= 2.42.2-3build2), libharfbuzz0b (= 2.6.4-1ubuntu4), libice6 (= 2:1.0.10-0ubuntu1), libicu66 (= 66.1-2ubuntu2), libisl22 (= 0.22.1-1), libjbig0 (= 2.1-3.1build1), libjpeg-turbo8 (= 2.0.3-0ubuntu1), libjpeg8 (= 8c-2ubuntu8), libjs-jquery (= 3.3.1~dfsg-3), libjs-sphinxdoc (= 1.8.5-7ubuntu3), libjs-underscore (= 1.9.1~dfsg-1), liblab-gamut1 (= 2.42.2-3build2), libltdl7 (= 2.4.6-14), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.38-4), libmagic1 (= 1:5.38-4), libmount1 (= 2.34-0.1ubuntu9), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libpam-modules (= 1.3.1-5ubuntu4), libpam-modules-bin (= 1.3.1-5ubuntu4), libpam-runtime (= 1.3.1-5ubuntu4), libpam0g (= 1.3.1-5ubuntu4), libpango-1.0-0 (= 1.44.7-2ubuntu4), libpangocairo-1.0-0 (= 1.44.7-2ubuntu4), libpangoft2-1.0-0 (= 1.44.7-2ubuntu4), libpathplan4 (= 2.42.2-3build2), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-12build1), libperl5.30 (= 5.30.0-9build1), libpipeline1 (= 1.5.2-2build1), libpixman-1-0 (= 0.38.4-0ubuntu1), libpng16-16 (= 1.6.37-2), libselinux1 (= 3.0-1build2), libsigsegv2 (= 2.12-2), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.34-0.1ubuntu9), libstdc++-9-dev (= 9.3.0-11ubuntu2), libstdc++6 (= 10-20200411-0ubuntu1), libsub-override-perl (= 0.09-2), libsystemd0 (= 245.4-4ubuntu3), libthai-data (= 0.1.28-3), libthai0 (= 0.1.28-3), libtiff5 (= 4.1.0+git191117-2build1), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libuchardet0 (= 0.0.6-3build1), libudev1 (= 245.4-4ubuntu3), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1ubuntu9), libwebp6 (= 0.6.1-2), libx11-6 (= 2:1.6.9-2ubuntu1), libx11-data (= 2:1.6.9-2ubuntu1), libxapian30 (= 1.4.14-2), libxau6 (= 1:1.0.9-0ubuntu1), libxaw7 (= 2:1.0.13-1), libxcb-render0 (= 1.14-2), libxcb-shm0 (= 1.14-2), libxcb1 (= 1.14-2), libxdmcp6 (= 1:1.1.3-0ubuntu1), libxext6 (= 2:1.3.4-0ubuntu1), libxml2 (= 2.9.10+dfsg-5), libxmu6 (= 2:1.1.3-0ubuntu1), libxpm4 (= 1:3.5.12-1), libxrender1 (= 1:0.9.10-1), libxt6 (= 1:1.1.5-1), libzstd1 (= 1.4.4+dfsg-3), linux-libc-dev (= 5.4.0-24.28), login (= 1:4.8.1-1ubuntu5), lsb-base (= 11.1.0ubuntu2), m4 (= 1.4.18-4), make (= 4.2.1-1.3), man-db (= 2.9.1-1), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.0-9build1), perl-base (= 5.30.0-9build1), perl-modules-5.30 (= 5.30.0-9build1), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sphinx-common (= 1.8.5-7ubuntu3), sysvinit-utils (= 2.96-2.1ubuntu1), tar (= 1.30+dfsg-7), tzdata (= 2019c-3ubuntu1), ucf (= 3.0038+nmu1), util-linux (= 2.34-0.1ubuntu9), x11-common (= 1:7.7+19ubuntu14), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-2ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=8" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1586855984" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalo_1.2.4-5_riscv64.deb ---------------------------- new Debian package, version 2.0. size 257204 bytes: control archive=956 bytes. 787 bytes, 15 lines control 477 bytes, 7 lines md5sums Package: clustalo Version: 1.2.4-5 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 502 Depends: libargtable2-0 (>= 7), libc6 (>= 2.27), libgcc-s1 (>= 3.0), libgomp1 (>= 6), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://www.clustal.org/omega/ Description: General-purpose multiple sequence alignment program for proteins Clustal Omega is a general-purpose multiple sequence alignment (MSA) program, primarily for amino-acid sequences. It produces high quality MSAs and is capable of handling data sets of hundreds of thousands of sequences in reasonable time, using multiple processors where available. drwxr-xr-x root/root 0 2020-04-14 09:19 ./ drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/ drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/bin/ -rwxr-xr-x root/root 480584 2020-04-14 09:19 ./usr/bin/clustalo drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/share/ drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/share/doc/clustalo/ -rw-r--r-- root/root 10994 2013-08-27 12:07 ./usr/share/doc/clustalo/README.gz -rw-r--r-- root/root 1257 2020-04-14 09:19 ./usr/share/doc/clustalo/changelog.Debian.gz -rw-r--r-- root/root 1230 2020-04-14 09:19 ./usr/share/doc/clustalo/copyright drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/share/doc/clustalo/examples/ -rw-r--r-- root/root 2269 2020-04-14 09:19 ./usr/share/doc/clustalo/examples/example.fa -rw-r--r-- root/root 1742 2020-04-14 09:19 ./usr/share/doc/clustalo/examples/f002 drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/share/man/ drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/share/man/man1/ -rw-r--r-- root/root 1083 2020-04-14 09:19 ./usr/share/man/man1/clustalo.1.gz libclustalo-dev_1.2.4-5_riscv64.deb ----------------------------------- new Debian package, version 2.0. size 641144 bytes: control archive=1516 bytes. 591 bytes, 15 lines control 2244 bytes, 31 lines md5sums Package: libclustalo-dev Source: clustalo Version: 1.2.4-5 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 5848 Depends: libargtable2-dev, clustalo (= 1.2.4-5) Suggests: libclustalo-doc Section: libdevel Priority: optional Homepage: http://www.clustal.org/omega/ Description: Library to embed Clustal Omega This package contains headers and libraries to include Clustal Omega in a program. It provides Clustal Omega usage with an API. drwxr-xr-x root/root 0 2020-04-14 09:19 ./ drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/ drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/include/ drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/include/clustalo/ -rw-r--r-- root/root 9523 2020-04-14 09:19 ./usr/include/clustalo/clustal-omega-config.h -rw-r--r-- root/root 4740 2020-04-14 09:19 ./usr/include/clustalo/clustal-omega.h drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/include/clustalo/clustal/ -rw-r--r-- root/root 1159 2020-04-14 09:19 ./usr/include/clustalo/clustal/hhalign_wrapper.h -rw-r--r-- root/root 1251 2020-04-14 09:19 ./usr/include/clustalo/clustal/ktuple_pair.h -rw-r--r-- root/root 1787 2020-04-14 09:19 ./usr/include/clustalo/clustal/log.h -rw-r--r-- root/root 866 2020-04-14 09:19 ./usr/include/clustalo/clustal/mbed.h -rw-r--r-- root/root 4112 2020-04-14 09:19 ./usr/include/clustalo/clustal/muscle_tree.h -rw-r--r-- root/root 1303 2020-04-14 09:19 ./usr/include/clustalo/clustal/pair_dist.h -rw-r--r-- root/root 1257 2020-04-14 09:19 ./usr/include/clustalo/clustal/progress.h -rw-r--r-- root/root 4032 2020-04-14 09:19 ./usr/include/clustalo/clustal/seq.h -rw-r--r-- root/root 2310 2020-04-14 09:19 ./usr/include/clustalo/clustal/symmatrix.h -rw-r--r-- root/root 1066 2020-04-14 09:19 ./usr/include/clustalo/clustal/tree.h -rw-r--r-- root/root 2308 2020-04-14 09:19 ./usr/include/clustalo/clustal/util.h -rw-r--r-- root/root 741 2020-04-14 09:19 ./usr/include/clustalo/clustal/weights.h drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/include/clustalo/hhalign/ -rw-r--r-- root/root 2961 2020-04-14 09:19 ./usr/include/clustalo/hhalign/general.h -rw-r--r-- root/root 859 2020-04-14 09:19 ./usr/include/clustalo/hhalign/hhfunc.h drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/include/clustalo/squid/ -rw-r--r-- root/root 1381 2020-04-14 09:19 ./usr/include/clustalo/squid/gki.h -rw-r--r-- root/root 3473 2020-04-14 09:19 ./usr/include/clustalo/squid/gsi64.h -rw-r--r-- root/root 13442 2020-04-14 09:19 ./usr/include/clustalo/squid/msa.h -rw-r--r-- root/root 1264 2020-04-14 09:19 ./usr/include/clustalo/squid/rk.h -rw-r--r-- root/root 10390 2020-04-14 09:19 ./usr/include/clustalo/squid/sqfuncs.h -rw-r--r-- root/root 19594 2020-04-14 09:19 ./usr/include/clustalo/squid/squid.h -rw-r--r-- root/root 489 2020-04-14 09:19 ./usr/include/clustalo/squid/sre_random.h -rw-r--r-- root/root 7610 2020-04-14 09:19 ./usr/include/clustalo/squid/ssi.h -rw-r--r-- root/root 1868 2020-04-14 09:19 ./usr/include/clustalo/squid/stockholm.h -rw-r--r-- root/root 1937 2020-04-14 09:19 ./usr/include/clustalo/squid/stopwatch.h -rw-r--r-- root/root 1434 2020-04-14 09:19 ./usr/include/clustalo/squid/vectorops.h -rw-r--r-- root/root 333 2020-04-14 09:19 ./usr/include/clustalo/squid/version.h drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/lib/ drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/lib/riscv64-linux-gnu/ -rw-r--r-- root/root 5848512 2020-04-14 09:19 ./usr/lib/riscv64-linux-gnu/libclustalo.a drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/lib/riscv64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 248 2020-04-14 09:19 ./usr/lib/riscv64-linux-gnu/pkgconfig/clustalo.pc drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/share/ drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-04-14 09:19 ./usr/share/doc/libclustalo-dev/ lrwxrwxrwx root/root 0 2020-04-14 09:19 ./usr/share/doc/libclustalo-dev/changelog.Debian.gz -> ../clustalo/changelog.Debian.gz -rw-r--r-- root/root 1230 2020-04-14 09:19 ./usr/share/doc/libclustalo-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 85360 Build-Time: 897 Distribution: groovy-proposed Host Architecture: riscv64 Install-Time: 175 Job: clustalo_1.2.4-5.dsc Machine Architecture: riscv64 Package: clustalo Package-Time: 1096 Source-Version: 1.2.4-5 Space: 85360 Status: successful Version: 1.2.4-5 -------------------------------------------------------------------------------- Finished at 2020-04-27T21:23:37Z Build needed 00:18:16, 85360k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19213541 Scanning for processes to kill in build PACKAGEBUILD-19213541 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19213541 Stopping target for build PACKAGEBUILD-19213541 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=groovy --arch=riscv64 PACKAGEBUILD-19213541 Removing build PACKAGEBUILD-19213541