RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux bos01-arm64-048 4.4.0-57-generic #78-Ubuntu SMP Fri Dec 9 23:48:08 UTC 2016 aarch64 Buildd toolchain package versions: launchpad-buildd_141 python-lpbuildd_141 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.6. Syncing the system clock with the buildd NTP service... 22 Dec 05:16:23 ntpdate[1924]: adjust time server 10.211.37.1 offset -0.002528 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11768048', '/home/buildd/filecache-default/da5a7fe91cfeb8b88d00c8c12442026baa97f2d9'] Unpacking chroot for build PACKAGEBUILD-11768048 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11768048'] Mounting chroot for build PACKAGEBUILD-11768048 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11768048', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11768048 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11768048', 'armhf'] Updating debian chroot for build PACKAGEBUILD-11768048 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [253 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [102 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [102 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main armhf Packages [1198 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [586 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe armhf Packages [7777 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4648 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf Packages [76.8 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [40.2 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe armhf Packages [299 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [148 kB] Fetched 15.3 MB in 5s (2558 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.24 perl-modules-5.24 The following packages will be upgraded: adduser advancecomp apt apt-transport-https base-files base-passwd bash binutils bsdutils ca-certificates cpp cpp-6 debianutils diffutils dmsetup findutils g++ g++-6 gcc gcc-6 gcc-6-base grep init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libassuan0 libatomic1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libcurl3-gnutls libdevmapper1.02.1 libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libksba8 libldap-2.4-2 liblzma5 libmount1 libnettle6 libnpth0 libpng16-16 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libubsan0 libudev1 libustr-1.0-1 libuuid1 libwind0-heimdal linux-libc-dev mount multiarch-support openssl perl perl-base pinentry-curses pkg-create-dbgsym systemd systemd-sysv tar tzdata ubuntu-keyring util-linux xz-utils zlib1g 100 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 48.4 MB of archives. After this operation, 32.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf base-files armhf 9.6ubuntu9 [57.0 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main armhf debianutils armhf 4.8.1 [84.3 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main armhf bash armhf 4.4-2ubuntu1 [527 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main armhf bsdutils armhf 1:2.29-1ubuntu2 [52.4 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main armhf diffutils armhf 1:3.5-1 [150 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main armhf findutils armhf 4.6.0+git+20161106-1 [268 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main armhf grep armhf 2.27-1 [141 kB] Get:8 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libc6-dev armhf 2.24-7ubuntu2 [1808 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libc-dev-bin armhf 2.24-7ubuntu2 [59.4 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main armhf linux-libc-dev armhf 4.9.0-11.12 [842 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main armhf libgomp1 armhf 6.2.1-7ubuntu1 [67.7 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main armhf gcc-6-base armhf 6.2.1-7ubuntu1 [17.9 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main armhf libgcc1 armhf 1:6.2.1-7ubuntu1 [38.3 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main armhf libcc1-0 armhf 6.2.1-7ubuntu1 [25.9 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main armhf binutils armhf 2.27.51.20161220-1ubuntu1 [2406 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main armhf libatomic1 armhf 6.2.1-7ubuntu1 [6242 B] Get:17 http://ftpmaster.internal/ubuntu zesty/main armhf libasan3 armhf 6.2.1-7ubuntu1 [294 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main armhf libubsan0 armhf 6.2.1-7ubuntu1 [96.2 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main armhf g++-6 armhf 6.2.1-7ubuntu1 [5923 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main armhf libstdc++-6-dev armhf 6.2.1-7ubuntu1 [1502 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main armhf libgcc-6-dev armhf 6.2.1-7ubuntu1 [549 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main armhf gcc-6 armhf 6.2.1-7ubuntu1 [5758 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main armhf cpp-6 armhf 6.2.1-7ubuntu1 [5226 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main armhf libstdc++6 armhf 6.2.1-7ubuntu1 [358 kB] Get:25 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf zlib1g armhf 1:1.2.8.dfsg-4ubuntu1 [45.8 kB] Get:26 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libgmp10 armhf 2:6.1.2+dfsg-1 [183 kB] Get:27 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libc6 armhf 2.24-7ubuntu2 [2150 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main armhf libuuid1 armhf 2.29-1ubuntu2 [14.4 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main armhf libblkid1 armhf 2.29-1ubuntu2 [98.1 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main armhf libfdisk1 armhf 2.29-1ubuntu2 [132 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main armhf libselinux1 armhf 2.6-3 [59.6 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main armhf util-linux armhf 2.29-1ubuntu2 [843 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main armhf mount armhf 2.29-1ubuntu2 [125 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main armhf perl-modules-5.24 all 5.24.1~rc4-1 [2663 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main armhf libperl5.24 armhf 5.24.1~rc4-1 [2804 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main armhf perl armhf 5.24.1~rc4-1 [219 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main armhf perl-base armhf 5.24.1~rc4-1 [1218 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main armhf tar armhf 1.29b-1.1 [194 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main armhf base-passwd armhf 3.5.42 [47.4 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main armhf init-system-helpers all 1.46 [37.3 kB] Get:41 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libc-bin armhf 2.24-7ubuntu2 [487 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main armhf liblzma5 armhf 5.2.2-1.2 [83.2 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/main armhf libapt-pkg5.0 armhf 1.4~beta2 [712 kB] Get:44 http://ftpmaster.internal/ubuntu zesty/main armhf adduser all 3.113+nmu3ubuntu5 [161 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main armhf ubuntu-keyring all 2016.10.27 [16.6 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main armhf apt armhf 1.4~beta2 [1037 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main armhf libapparmor1 armhf 2.10.95-4ubuntu5.2 [26.3 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/main armhf libgpg-error0 armhf 1.25-2 [30.2 kB] Get:49 http://ftpmaster.internal/ubuntu zesty/main armhf libgcrypt20 armhf 1.7.5-2 [344 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/main armhf libmount1 armhf 2.29-1ubuntu2 [106 kB] Get:51 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libseccomp2 armhf 2.3.1-2.1ubuntu1 [29.9 kB] Get:52 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf systemd armhf 232-8 [2174 kB] Get:53 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libsystemd0 armhf 232-8 [191 kB] Get:54 http://ftpmaster.internal/ubuntu zesty/main armhf init armhf 1.46 [5318 B] Get:55 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf systemd-sysv armhf 232-8 [14.1 kB] Get:56 http://ftpmaster.internal/ubuntu zesty/main armhf libsepol1 armhf 2.6-2 [191 kB] Get:57 http://ftpmaster.internal/ubuntu zesty/main armhf libustr-1.0-1 armhf 1.0.4-6 [48.0 kB] Get:58 http://ftpmaster.internal/ubuntu zesty/main armhf libsemanage-common all 2.6-1 [6832 B] Get:59 http://ftpmaster.internal/ubuntu zesty/main armhf libsemanage1 armhf 2.6-1 [71.3 kB] Get:60 http://ftpmaster.internal/ubuntu zesty/main armhf libsmartcols1 armhf 2.29-1ubuntu2 [60.4 kB] Get:61 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libudev1 armhf 232-8 [52.0 kB] Get:62 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf multiarch-support armhf 2.24-7ubuntu2 [6816 B] Get:63 http://ftpmaster.internal/ubuntu zesty/main armhf tzdata all 2016j-2 [204 kB] Get:64 http://ftpmaster.internal/ubuntu zesty/main armhf libdevmapper1.02.1 armhf 2:1.02.136-1ubuntu1 [126 kB] Get:65 http://ftpmaster.internal/ubuntu zesty/main armhf dmsetup armhf 2:1.02.136-1ubuntu1 [71.2 kB] Get:66 http://ftpmaster.internal/ubuntu zesty/main armhf libroken18-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [33.8 kB] Get:67 http://ftpmaster.internal/ubuntu zesty/main armhf libasn1-8-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [138 kB] Get:68 http://ftpmaster.internal/ubuntu zesty/main armhf libassuan0 armhf 2.4.3-2 [28.2 kB] Get:69 http://ftpmaster.internal/ubuntu zesty/main armhf libhogweed4 armhf 3.3-1 [126 kB] Get:70 http://ftpmaster.internal/ubuntu zesty/main armhf libnettle6 armhf 3.3-1 [112 kB] Get:71 http://ftpmaster.internal/ubuntu zesty/main armhf libgnutls30 armhf 3.5.6-4ubuntu2 [570 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main armhf libheimbase1-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [24.1 kB] Get:73 http://ftpmaster.internal/ubuntu zesty/main armhf libhcrypto4-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [77.2 kB] Get:74 http://ftpmaster.internal/ubuntu zesty/main armhf libwind0-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [47.0 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main armhf libhx509-5-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [88.3 kB] Get:76 http://ftpmaster.internal/ubuntu zesty/main armhf libsqlite3-0 armhf 3.15.2-2 [411 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main armhf libkrb5-26-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [165 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main armhf libheimntlm0-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [13.3 kB] Get:79 http://ftpmaster.internal/ubuntu zesty/main armhf libgssapi3-heimdal armhf 1.7~git20160703+dfsg-1ubuntu1 [79.3 kB] Get:80 http://ftpmaster.internal/ubuntu zesty/main armhf libksba8 armhf 1.3.5-2 [78.7 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main armhf libsasl2-modules-db armhf 2.1.27~72-g88d82a3+dfsg-1 [13.5 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main armhf libsasl2-2 armhf 2.1.27~72-g88d82a3+dfsg-1 [42.2 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2ubuntu5 [139 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/main armhf libnpth0 armhf 1.3-1 [7020 B] Get:85 http://ftpmaster.internal/ubuntu zesty/main armhf libslang2 armhf 2.3.1-5ubuntu1 [381 kB] Get:86 http://ftpmaster.internal/ubuntu zesty/main armhf libssl1.0.0 armhf 1.0.2g-1ubuntu10 [711 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main armhf pinentry-curses armhf 1.0.0-1 [28.1 kB] Get:88 http://ftpmaster.internal/ubuntu zesty/main armhf xz-utils armhf 5.2.2-1.2 [80.0 kB] Get:89 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libgssapi-krb5-2 armhf 1.15-1 [98.6 kB] Get:90 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libkrb5-3 armhf 1.15-1 [231 kB] Get:91 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libkrb5support0 armhf 1.15-1 [28.2 kB] Get:92 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libk5crypto3 armhf 1.15-1 [82.8 kB] Get:93 http://ftpmaster.internal/ubuntu zesty/main armhf libcurl3-gnutls armhf 7.51.0-1ubuntu1 [163 kB] Get:94 http://ftpmaster.internal/ubuntu zesty/main armhf apt-transport-https armhf 1.4~beta2 [30.5 kB] Get:95 http://ftpmaster.internal/ubuntu zesty/main armhf openssl armhf 1.0.2g-1ubuntu10 [484 kB] Get:96 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf ca-certificates all 20161130 [193 kB] Get:97 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libpng16-16 armhf 1.6.26-6 [158 kB] Get:98 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf advancecomp armhf 1.23-1 [158 kB] Get:99 http://ftpmaster.internal/ubuntu zesty/main armhf cpp armhf 4:6.2.1-1ubuntu1 [27.4 kB] Get:100 http://ftpmaster.internal/ubuntu zesty/main armhf gcc armhf 4:6.2.1-1ubuntu1 [5186 B] Get:101 http://ftpmaster.internal/ubuntu zesty/main armhf g++ armhf 4:6.2.1-1ubuntu1 [1482 B] Get:102 http://ftpmaster.internal/ubuntu zesty/main armhf pkg-create-dbgsym all 0.73 [8952 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 48.4 MB in 1s (28.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12051 files and directories currently installed.) Preparing to unpack .../base-files_9.6ubuntu9_armhf.deb ... Unpacking base-files (9.6ubuntu9) over (9.6ubuntu5) ... Setting up base-files (9.6ubuntu9) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12053 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.1_armhf.deb ... Unpacking debianutils (4.8.1) over (4.8) ... Setting up debianutils (4.8.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12053 files and directories currently installed.) Preparing to unpack .../bash_4.4-2ubuntu1_armhf.deb ... Unpacking bash (4.4-2ubuntu1) over (4.3-15ubuntu1) ... Setting up bash (4.4-2ubuntu1) ... Installing new version of config file /etc/skel/.profile ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12053 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.29-1ubuntu2_armhf.deb ... Unpacking bsdutils (1:2.29-1ubuntu2) over (1:2.28.2-1ubuntu1) ... Setting up bsdutils (1:2.29-1ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12053 files and directories currently installed.) Preparing to unpack .../diffutils_1%3a3.5-1_armhf.deb ... Unpacking diffutils (1:3.5-1) over (1:3.3-3) ... Setting up diffutils (1:3.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12053 files and directories currently installed.) Preparing to unpack .../findutils_4.6.0+git+20161106-1_armhf.deb ... Unpacking findutils (4.6.0+git+20161106-1) over (4.6.0+git+20160703-2) ... Setting up findutils (4.6.0+git+20161106-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12053 files and directories currently installed.) Preparing to unpack .../archives/grep_2.27-1_armhf.deb ... Unpacking grep (2.27-1) over (2.25-6) ... Setting up grep (2.27-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12053 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.24-7ubuntu2_armhf.deb ... Unpacking libc6-dev:armhf (2.24-7ubuntu2) over (2.24-3ubuntu1) ... Preparing to unpack .../1-libc-dev-bin_2.24-7ubuntu2_armhf.deb ... Unpacking libc-dev-bin (2.24-7ubuntu2) over (2.24-3ubuntu1) ... Preparing to unpack .../2-linux-libc-dev_4.9.0-11.12_armhf.deb ... Unpacking linux-libc-dev:armhf (4.9.0-11.12) over (4.8.0-22.24) ... Preparing to unpack .../3-libgomp1_6.2.1-7ubuntu1_armhf.deb ... Unpacking libgomp1:armhf (6.2.1-7ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../4-gcc-6-base_6.2.1-7ubuntu1_armhf.deb ... Unpacking gcc-6-base:armhf (6.2.1-7ubuntu1) over (6.2.0-5ubuntu12) ... Setting up gcc-6-base:armhf (6.2.1-7ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12069 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a6.2.1-7ubuntu1_armhf.deb ... Unpacking libgcc1:armhf (1:6.2.1-7ubuntu1) over (1:6.2.0-5ubuntu12) ... Setting up libgcc1:armhf (1:6.2.1-7ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12069 files and directories currently installed.) Preparing to unpack .../00-libcc1-0_6.2.1-7ubuntu1_armhf.deb ... Unpacking libcc1-0:armhf (6.2.1-7ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../01-binutils_2.27.51.20161220-1ubuntu1_armhf.deb ... Unpacking binutils (2.27.51.20161220-1ubuntu1) over (2.27-8ubuntu2) ... Preparing to unpack .../02-libatomic1_6.2.1-7ubuntu1_armhf.deb ... Unpacking libatomic1:armhf (6.2.1-7ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../03-libasan3_6.2.1-7ubuntu1_armhf.deb ... Unpacking libasan3:armhf (6.2.1-7ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../04-libubsan0_6.2.1-7ubuntu1_armhf.deb ... Unpacking libubsan0:armhf (6.2.1-7ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../05-g++-6_6.2.1-7ubuntu1_armhf.deb ... Unpacking g++-6 (6.2.1-7ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../06-libstdc++-6-dev_6.2.1-7ubuntu1_armhf.deb ... Unpacking libstdc++-6-dev:armhf (6.2.1-7ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../07-libgcc-6-dev_6.2.1-7ubuntu1_armhf.deb ... Unpacking libgcc-6-dev:armhf (6.2.1-7ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../08-gcc-6_6.2.1-7ubuntu1_armhf.deb ... Unpacking gcc-6 (6.2.1-7ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../09-cpp-6_6.2.1-7ubuntu1_armhf.deb ... Unpacking cpp-6 (6.2.1-7ubuntu1) over (6.2.0-5ubuntu12) ... Preparing to unpack .../10-libstdc++6_6.2.1-7ubuntu1_armhf.deb ... Unpacking libstdc++6:armhf (6.2.1-7ubuntu1) over (6.2.0-5ubuntu12) ... Setting up libstdc++6:armhf (6.2.1-7ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12070 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.8.dfsg-4ubuntu1_armhf.deb ... Unpacking zlib1g:armhf (1:1.2.8.dfsg-4ubuntu1) over (1:1.2.8.dfsg-2ubuntu5) ... Setting up zlib1g:armhf (1:1.2.8.dfsg-4ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12070 files and directories currently installed.) Preparing to unpack .../0-libgmp10_2%3a6.1.2+dfsg-1_armhf.deb ... Unpacking libgmp10:armhf (2:6.1.2+dfsg-1) over (2:6.1.1+dfsg-1) ... Preparing to unpack .../1-libc6_2.24-7ubuntu2_armhf.deb ... Unpacking libc6:armhf (2.24-7ubuntu2) over (2.24-3ubuntu1) ... Setting up libc6:armhf (2.24-7ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12070 files and directories currently installed.) Preparing to unpack .../libuuid1_2.29-1ubuntu2_armhf.deb ... Unpacking libuuid1:armhf (2.29-1ubuntu2) over (2.28.2-1ubuntu1) ... Setting up libuuid1:armhf (2.29-1ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12070 files and directories currently installed.) Preparing to unpack .../libblkid1_2.29-1ubuntu2_armhf.deb ... Unpacking libblkid1:armhf (2.29-1ubuntu2) over (2.28.2-1ubuntu1) ... Setting up libblkid1:armhf (2.29-1ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12070 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.29-1ubuntu2_armhf.deb ... Unpacking libfdisk1:armhf (2.29-1ubuntu2) over (2.28.2-1ubuntu1) ... Setting up libfdisk1:armhf (2.29-1ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12070 files and directories currently installed.) Preparing to unpack .../libselinux1_2.6-3_armhf.deb ... Unpacking libselinux1:armhf (2.6-3) over (2.5-3) ... Setting up libselinux1:armhf (2.6-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12070 files and directories currently installed.) Preparing to unpack .../util-linux_2.29-1ubuntu2_armhf.deb ... Unpacking util-linux (2.29-1ubuntu2) over (2.28.2-1ubuntu1) ... Setting up util-linux (2.29-1ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12069 files and directories currently installed.) Preparing to unpack .../mount_2.29-1ubuntu2_armhf.deb ... Unpacking mount (2.29-1ubuntu2) over (2.28.2-1ubuntu1) ... Setting up mount (2.29-1ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12069 files and directories currently installed.) Preparing to unpack .../0-perl_5.24.1~rc4-1_armhf.deb ... Unpacking perl (5.24.1~rc4-1) over (5.22.2-3) ... Selecting previously unselected package perl-modules-5.24. Preparing to unpack .../1-perl-modules-5.24_5.24.1~rc4-1_all.deb ... Unpacking perl-modules-5.24 (5.24.1~rc4-1) ... Selecting previously unselected package libperl5.24:armhf. Preparing to unpack .../2-libperl5.24_5.24.1~rc4-1_armhf.deb ... Unpacking libperl5.24:armhf (5.24.1~rc4-1) ... Preparing to unpack .../3-perl-base_5.24.1~rc4-1_armhf.deb ... Unpacking perl-base (5.24.1~rc4-1) over (5.22.2-3) ... Setting up perl-base (5.24.1~rc4-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13857 files and directories currently installed.) Preparing to unpack .../tar_1.29b-1.1_armhf.deb ... Unpacking tar (1.29b-1.1) over (1.29b-1) ... Setting up tar (1.29b-1.1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13857 files and directories currently installed.) Preparing to unpack .../base-passwd_3.5.42_armhf.deb ... Unpacking base-passwd (3.5.42) over (3.5.40) ... Setting up base-passwd (3.5.42) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13857 files and directories currently installed.) Preparing to unpack .../init-system-helpers_1.46_all.deb ... Unpacking init-system-helpers (1.46) over (1.45) ... Setting up init-system-helpers (1.46) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13857 files and directories currently installed.) Preparing to unpack .../libc-bin_2.24-7ubuntu2_armhf.deb ... Unpacking libc-bin (2.24-7ubuntu2) over (2.24-3ubuntu1) ... Setting up libc-bin (2.24-7ubuntu2) ... Updating /etc/nsswitch.conf to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13857 files and directories currently installed.) Preparing to unpack .../liblzma5_5.2.2-1.2_armhf.deb ... Unpacking liblzma5:armhf (5.2.2-1.2) over (5.1.1alpha+20120614-2.1ubuntu1) ... Setting up liblzma5:armhf (5.2.2-1.2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13857 files and directories currently installed.) Preparing to unpack .../libapt-pkg5.0_1.4~beta2_armhf.deb ... Unpacking libapt-pkg5.0:armhf (1.4~beta2) over (1.3.1) ... Setting up libapt-pkg5.0:armhf (1.4~beta2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13857 files and directories currently installed.) Preparing to unpack .../adduser_3.113+nmu3ubuntu5_all.deb ... Unpacking adduser (3.113+nmu3ubuntu5) over (3.113+nmu3ubuntu4) ... Setting up adduser (3.113+nmu3ubuntu5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13857 files and directories currently installed.) Preparing to unpack .../ubuntu-keyring_2016.10.27_all.deb ... Unpacking ubuntu-keyring (2016.10.27) over (2016.09.19) ... Setting up ubuntu-keyring (2016.10.27) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13855 files and directories currently installed.) Preparing to unpack .../apt_1.4~beta2_armhf.deb ... Unpacking apt (1.4~beta2) over (1.3.1) ... Setting up apt (1.4~beta2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13859 files and directories currently installed.) Preparing to unpack .../0-libapparmor1_2.10.95-4ubuntu5.2_armhf.deb ... Unpacking libapparmor1:armhf (2.10.95-4ubuntu5.2) over (2.10.95-4ubuntu5) ... Preparing to unpack .../1-libgpg-error0_1.25-2_armhf.deb ... Unpacking libgpg-error0:armhf (1.25-2) over (1.24-1) ... Setting up libgpg-error0:armhf (1.25-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13859 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.7.5-2_armhf.deb ... Unpacking libgcrypt20:armhf (1.7.5-2) over (1.7.2-2ubuntu1) ... Setting up libgcrypt20:armhf (1.7.5-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13859 files and directories currently installed.) Preparing to unpack .../libmount1_2.29-1ubuntu2_armhf.deb ... Unpacking libmount1:armhf (2.29-1ubuntu2) over (2.28.2-1ubuntu1) ... Setting up libmount1:armhf (2.29-1ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13859 files and directories currently installed.) Preparing to unpack .../0-libseccomp2_2.3.1-2.1ubuntu1_armhf.deb ... Unpacking libseccomp2:armhf (2.3.1-2.1ubuntu1) over (2.3.1-2ubuntu2) ... Preparing to unpack .../1-systemd_232-8_armhf.deb ... Unpacking systemd (232-8) over (231-9git1) ... Preparing to unpack .../2-libsystemd0_232-8_armhf.deb ... Unpacking libsystemd0:armhf (232-8) over (231-9git1) ... Setting up libsystemd0:armhf (232-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13855 files and directories currently installed.) Preparing to unpack .../archives/init_1.46_armhf.deb ... Unpacking init (1.46) over (1.45) ... Setting up libapparmor1:armhf (2.10.95-4ubuntu5.2) ... Setting up libseccomp2:armhf (2.3.1-2.1ubuntu1) ... Setting up systemd (232-8) ... Installing new version of config file /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Installing new version of config file /etc/systemd/system.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13855 files and directories currently installed.) Preparing to unpack .../0-systemd-sysv_232-8_armhf.deb ... Unpacking systemd-sysv (232-8) over (231-9git1) ... Preparing to unpack .../1-libsepol1_2.6-2_armhf.deb ... Unpacking libsepol1:armhf (2.6-2) over (2.5-1) ... Setting up libsepol1:armhf (2.6-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13855 files and directories currently installed.) Preparing to unpack .../libustr-1.0-1_1.0.4-6_armhf.deb ... Unpacking libustr-1.0-1:armhf (1.0.4-6) over (1.0.4-5) ... Setting up libustr-1.0-1:armhf (1.0.4-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13855 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.6-1_all.deb ... Unpacking libsemanage-common (2.6-1) over (2.5-1) ... Setting up libsemanage-common (2.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13855 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.6-1_armhf.deb ... Unpacking libsemanage1:armhf (2.6-1) over (2.5-1) ... Setting up libsemanage1:armhf (2.6-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13855 files and directories currently installed.) Preparing to unpack .../libsmartcols1_2.29-1ubuntu2_armhf.deb ... Unpacking libsmartcols1:armhf (2.29-1ubuntu2) over (2.28.2-1ubuntu1) ... Setting up libsmartcols1:armhf (2.29-1ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13855 files and directories currently installed.) Preparing to unpack .../libudev1_232-8_armhf.deb ... Unpacking libudev1:armhf (232-8) over (231-9git1) ... Setting up libudev1:armhf (232-8) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13855 files and directories currently installed.) Preparing to unpack .../multiarch-support_2.24-7ubuntu2_armhf.deb ... Unpacking multiarch-support (2.24-7ubuntu2) over (2.24-3ubuntu1) ... Setting up multiarch-support (2.24-7ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13855 files and directories currently installed.) Preparing to unpack .../00-tzdata_2016j-2_all.deb ... Unpacking tzdata (2016j-2) over (2016g-1) ... Preparing to unpack .../01-libdevmapper1.02.1_2%3a1.02.136-1ubuntu1_armhf.deb ... Unpacking libdevmapper1.02.1:armhf (2:1.02.136-1ubuntu1) over (2:1.02.130-1ubuntu1) ... Preparing to unpack .../02-dmsetup_2%3a1.02.136-1ubuntu1_armhf.deb ... Unpacking dmsetup (2:1.02.136-1ubuntu1) over (2:1.02.130-1ubuntu1) ... Preparing to unpack .../03-libroken18-heimdal_1.7~git20160703+dfsg-1ubuntu1_armhf.deb ... Unpacking libroken18-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../04-libasn1-8-heimdal_1.7~git20160703+dfsg-1ubuntu1_armhf.deb ... Unpacking libasn1-8-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../05-libassuan0_2.4.3-2_armhf.deb ... Unpacking libassuan0:armhf (2.4.3-2) over (2.4.3-1) ... Preparing to unpack .../06-libhogweed4_3.3-1_armhf.deb ... Unpacking libhogweed4:armhf (3.3-1) over (3.2-1) ... Preparing to unpack .../07-libnettle6_3.3-1_armhf.deb ... Unpacking libnettle6:armhf (3.3-1) over (3.2-1) ... Preparing to unpack .../08-libgnutls30_3.5.6-4ubuntu2_armhf.deb ... Unpacking libgnutls30:armhf (3.5.6-4ubuntu2) over (3.5.3-5ubuntu1) ... Preparing to unpack .../09-libheimbase1-heimdal_1.7~git20160703+dfsg-1ubuntu1_armhf.deb ... Unpacking libheimbase1-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../10-libhcrypto4-heimdal_1.7~git20160703+dfsg-1ubuntu1_armhf.deb ... Unpacking libhcrypto4-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../11-libwind0-heimdal_1.7~git20160703+dfsg-1ubuntu1_armhf.deb ... Unpacking libwind0-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../12-libhx509-5-heimdal_1.7~git20160703+dfsg-1ubuntu1_armhf.deb ... Unpacking libhx509-5-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../13-libsqlite3-0_3.15.2-2_armhf.deb ... Unpacking libsqlite3-0:armhf (3.15.2-2) over (3.14.1-1build1) ... Preparing to unpack .../14-libkrb5-26-heimdal_1.7~git20160703+dfsg-1ubuntu1_armhf.deb ... Unpacking libkrb5-26-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../15-libheimntlm0-heimdal_1.7~git20160703+dfsg-1ubuntu1_armhf.deb ... Unpacking libheimntlm0-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../16-libgssapi3-heimdal_1.7~git20160703+dfsg-1ubuntu1_armhf.deb ... Unpacking libgssapi3-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) over (1.7~git20150920+dfsg-4ubuntu1) ... Preparing to unpack .../17-libksba8_1.3.5-2_armhf.deb ... Unpacking libksba8:armhf (1.3.5-2) over (1.3.4-4) ... Preparing to unpack .../18-libsasl2-modules-db_2.1.27~72-g88d82a3+dfsg-1_armhf.deb ... Unpacking libsasl2-modules-db:armhf (2.1.27~72-g88d82a3+dfsg-1) over (2.1.26.dfsg1-15) ... Preparing to unpack .../19-libsasl2-2_2.1.27~72-g88d82a3+dfsg-1_armhf.deb ... Unpacking libsasl2-2:armhf (2.1.27~72-g88d82a3+dfsg-1) over (2.1.26.dfsg1-15) ... Preparing to unpack .../20-libldap-2.4-2_2.4.42+dfsg-2ubuntu5_armhf.deb ... Unpacking libldap-2.4-2:armhf (2.4.42+dfsg-2ubuntu5) over (2.4.42+dfsg-2ubuntu4) ... Preparing to unpack .../21-libnpth0_1.3-1_armhf.deb ... Unpacking libnpth0:armhf (1.3-1) over (1.2-3) ... Preparing to unpack .../22-libslang2_2.3.1-5ubuntu1_armhf.deb ... Unpacking libslang2:armhf (2.3.1-5ubuntu1) over (2.3.0-2.3ubuntu1) ... Preparing to unpack .../23-libssl1.0.0_1.0.2g-1ubuntu10_armhf.deb ... Unpacking libssl1.0.0:armhf (1.0.2g-1ubuntu10) over (1.0.2g-1ubuntu9) ... Preparing to unpack .../24-pinentry-curses_1.0.0-1_armhf.deb ... Unpacking pinentry-curses (1.0.0-1) over (0.9.7-5) ... Preparing to unpack .../25-xz-utils_5.2.2-1.2_armhf.deb ... Unpacking xz-utils (5.2.2-1.2) over (5.1.1alpha+20120614-2.1ubuntu1) ... Preparing to unpack .../26-libgssapi-krb5-2_1.15-1_armhf.deb ... Unpacking libgssapi-krb5-2:armhf (1.15-1) over (1.14.3+dfsg-2) ... Preparing to unpack .../27-libkrb5-3_1.15-1_armhf.deb ... Unpacking libkrb5-3:armhf (1.15-1) over (1.14.3+dfsg-2) ... Preparing to unpack .../28-libkrb5support0_1.15-1_armhf.deb ... Unpacking libkrb5support0:armhf (1.15-1) over (1.14.3+dfsg-2) ... Preparing to unpack .../29-libk5crypto3_1.15-1_armhf.deb ... Unpacking libk5crypto3:armhf (1.15-1) over (1.14.3+dfsg-2) ... Preparing to unpack .../30-libcurl3-gnutls_7.51.0-1ubuntu1_armhf.deb ... Unpacking libcurl3-gnutls:armhf (7.51.0-1ubuntu1) over (7.50.1-1ubuntu1) ... Preparing to unpack .../31-apt-transport-https_1.4~beta2_armhf.deb ... Unpacking apt-transport-https (1.4~beta2) over (1.3.1) ... Preparing to unpack .../32-openssl_1.0.2g-1ubuntu10_armhf.deb ... Unpacking openssl (1.0.2g-1ubuntu10) over (1.0.2g-1ubuntu9) ... Preparing to unpack .../33-ca-certificates_20161130_all.deb ... Unpacking ca-certificates (20161130) over (20160104ubuntu1) ... Preparing to unpack .../34-libpng16-16_1.6.26-6_armhf.deb ... Unpacking libpng16-16:armhf (1.6.26-6) over (1.6.25-1) ... Preparing to unpack .../35-advancecomp_1.23-1_armhf.deb ... Unpacking advancecomp (1.23-1) over (1.20-1) ... Preparing to unpack .../36-cpp_4%3a6.2.1-1ubuntu1_armhf.deb ... Unpacking cpp (4:6.2.1-1ubuntu1) over (4:6.1.1-1ubuntu2) ... Preparing to unpack .../37-gcc_4%3a6.2.1-1ubuntu1_armhf.deb ... Removing old gcc doc directory. Unpacking gcc (4:6.2.1-1ubuntu1) over (4:6.1.1-1ubuntu2) ... Preparing to unpack .../38-g++_4%3a6.2.1-1ubuntu1_armhf.deb ... Unpacking g++ (4:6.2.1-1ubuntu1) over (4:6.1.1-1ubuntu2) ... Preparing to unpack .../39-pkg-create-dbgsym_0.73_all.deb ... Unpacking pkg-create-dbgsym (0.73) over (0.72) ... Setting up libnpth0:armhf (1.3-1) ... Setting up libgomp1:armhf (6.2.1-7ubuntu1) ... Setting up libatomic1:armhf (6.2.1-7ubuntu1) ... Setting up perl-modules-5.24 (5.24.1~rc4-1) ... Setting up libperl5.24:armhf (5.24.1~rc4-1) ... Setting up libnettle6:armhf (3.3-1) ... Setting up libcc1-0:armhf (6.2.1-7ubuntu1) ... Setting up libasan3:armhf (6.2.1-7ubuntu1) ... Setting up libssl1.0.0:armhf (1.0.2g-1ubuntu10) ... Setting up libpng16-16:armhf (1.6.26-6) ... Setting up tzdata (2016j-2) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Dec 22 05:17:31 UTC 2016. Universal Time is now: Thu Dec 22 05:17:31 UTC 2016. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (232-8) ... Setting up libubsan0:armhf (6.2.1-7ubuntu1) ... Setting up libsasl2-modules-db:armhf (2.1.27~72-g88d82a3+dfsg-1) ... Setting up linux-libc-dev:armhf (4.9.0-11.12) ... Setting up advancecomp (1.23-1) ... Setting up libsasl2-2:armhf (2.1.27~72-g88d82a3+dfsg-1) ... Setting up libroken18-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libksba8:armhf (1.3.5-2) ... Setting up libdevmapper1.02.1:armhf (2:1.02.136-1ubuntu1) ... Setting up libkrb5support0:armhf (1.15-1) ... Setting up perl (5.24.1~rc4-1) ... Installing new version of config file /etc/perl/sitecustomize.pl ... Setting up libgmp10:armhf (2:6.1.2+dfsg-1) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Setting up pkg-create-dbgsym (0.73) ... Setting up xz-utils (5.2.2-1.2) ... Setting up libheimbase1-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up openssl (1.0.2g-1ubuntu10) ... Setting up libsqlite3-0:armhf (3.15.2-2) ... Setting up dmsetup (2:1.02.136-1ubuntu1) ... Setting up binutils (2.27.51.20161220-1ubuntu1) ... Setting up cpp-6 (6.2.1-7ubuntu1) ... Setting up libc-dev-bin (2.24-7ubuntu2) ... Setting up ca-certificates (20161130) ... Updating certificates in /etc/ssl/certs... 10 added, 10 removed; done. Setting up libc6-dev:armhf (2.24-7ubuntu2) ... Setting up libslang2:armhf (2.3.1-5ubuntu1) ... Setting up libassuan0:armhf (2.4.3-2) ... Setting up cpp (4:6.2.1-1ubuntu1) ... Setting up libk5crypto3:armhf (1.15-1) ... Setting up libgcc-6-dev:armhf (6.2.1-7ubuntu1) ... Setting up libstdc++-6-dev:armhf (6.2.1-7ubuntu1) ... Setting up libwind0-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up init (1.46) ... Setting up libasn1-8-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhcrypto4-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libhx509-5-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up gcc-6 (6.2.1-7ubuntu1) ... Setting up libhogweed4:armhf (3.3-1) ... Setting up g++-6 (6.2.1-7ubuntu1) ... Setting up pinentry-curses (1.0.0-1) ... Setting up libkrb5-3:armhf (1.15-1) ... Setting up libkrb5-26-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libheimntlm0-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libgnutls30:armhf (3.5.6-4ubuntu2) ... Setting up gcc (4:6.2.1-1ubuntu1) ... Setting up libgssapi-krb5-2:armhf (1.15-1) ... Setting up g++ (4:6.2.1-1ubuntu1) ... Setting up libgssapi3-heimdal:armhf (1.7~git20160703+dfsg-1ubuntu1) ... Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2ubuntu5) ... Setting up libcurl3-gnutls:armhf (7.51.0-1ubuntu1) ... Setting up apt-transport-https (1.4~beta2) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Processing triggers for ca-certificates (20161130) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11768048', 'armhf', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=armhf', '--dist=zesty-proposed', '--purge=never', '--nolog', 'clustalo_1.2.4-1.dsc'] Initiating build PACKAGEBUILD-11768048 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-57-generic #78-Ubuntu SMP Fri Dec 9 23:48:08 UTC 2016 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-arm64-048.buildd +==============================================================================+ | clustalo 1.2.4-1 (armhf) 22 Dec 2016 05:17 | +==============================================================================+ Package: clustalo Version: 1.2.4-1 Source Version: 1.2.4-1 Distribution: zesty-proposed Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/clustalo-B8eXrU/clustalo-1.2.4' with '<>' I: NOTICE: Log filtering will replace 'build/clustalo-B8eXrU' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11768048/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- clustalo_1.2.4-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-gd5T6U/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-gd5T6U/apt_archive ./ InRelease Get:2 copy:/<>/resolver-gd5T6U/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-gd5T6U/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-gd5T6U/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-gd5T6U/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (51.6 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-gd5T6U/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13865 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), dh-autoreconf, dh-linktree, libargtable2-dev, doxygen, graphviz, sphinx-common Filtered Build-Depends: debhelper (>= 10), dh-autoreconf, dh-linktree, libargtable2-dev, doxygen, graphviz, sphinx-common dpkg-deb: building package 'sbuild-build-depends-clustalo-dummy' in '/<>/resolver-Sb2GNy/apt_archive/sbuild-build-depends-clustalo-dummy.deb'. Ign:1 copy:/<>/resolver-Sb2GNy/apt_archive ./ InRelease Get:2 copy:/<>/resolver-Sb2GNy/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-Sb2GNy/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-Sb2GNy/apt_archive ./ Sources [261 B] Get:5 copy:/<>/resolver-Sb2GNy/apt_archive ./ Packages [584 B] Fetched 2964 B in 0s (130 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install clustalo build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-linktree dh-strip-nondeterminism doxygen file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian libarchive-zip-perl libargtable2-0 libargtable2-dev libargtable2-docs libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-3.9 libcroco3 libdatrie1 libedit2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgd3 libglib2.0-0 libgraphite2-3 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu57 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libllvm3.9 libltdl7 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libsigsegv2 libsm6 libthai-data libthai0 libtiff5 libtimedate-perl libtool libunistring0 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 m4 man-db po-debconf sphinx-common ucf x11-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make doxygen-latex doxygen-doc doxygen-gui gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff libgd-tools libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur fonts-liberation libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev xml-core libmail-sendmail-perl python-sphinx | python3-sphinx The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-linktree dh-strip-nondeterminism doxygen file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base graphviz groff-base intltool-debian libarchive-zip-perl libargtable2-0 libargtable2-dev libargtable2-docs libbsd0 libcairo2 libcdt5 libcgraph6 libclang1-3.9 libcroco3 libdatrie1 libedit2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgd3 libglib2.0-0 libgraphite2-3 libgvc6 libgvpr2 libharfbuzz0b libice6 libicu57 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-sphinxdoc libjs-underscore libllvm3.9 libltdl7 libmagic-mgc libmagic1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpathplan4 libpipeline1 libpixman-1-0 libsigsegv2 libsm6 libthai-data libthai0 libtiff5 libtimedate-perl libtool libunistring0 libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 m4 man-db po-debconf sbuild-build-depends-clustalo-dummy sphinx-common ucf x11-common 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 43.8 MB of archives. After this operation, 147 MB of additional disk space will be used. Get:1 copy:/<>/resolver-Sb2GNy/apt_archive ./ sbuild-build-depends-clustalo-dummy 0.invalid.0 [824 B] Get:2 http://ftpmaster.internal/ubuntu zesty/main armhf libxau6 armhf 1:1.0.8-1 [7324 B] Get:3 http://ftpmaster.internal/ubuntu zesty/main armhf libxdmcp6 armhf 1:1.1.2-1.1 [9620 B] Get:4 http://ftpmaster.internal/ubuntu zesty/main armhf libxcb1 armhf 1.11.1-1ubuntu1 [36.4 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main armhf libx11-data all 2:1.6.3-1ubuntu3 [113 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main armhf libx11-6 armhf 2:1.6.3-1ubuntu3 [513 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main armhf libxext6 armhf 2:1.3.3-1 [25.1 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main armhf groff-base armhf 1.22.3-9 [1013 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main armhf libbsd0 armhf 0.8.3-1 [48.3 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main armhf bsdmainutils armhf 9.0.12ubuntu1 [169 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main armhf libpipeline1 armhf 1.4.1-2 [21.0 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf man-db armhf 2.7.6.1-2 [873 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main armhf fonts-dejavu-core all 2.37-1 [1041 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main armhf ucf all 3.0036 [52.9 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main armhf fontconfig-config all 2.11.94-0ubuntu2 [49.9 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main armhf libexpat1 armhf 2.2.0-1 [53.1 kB] Get:17 http://ftpmaster.internal/ubuntu zesty/main armhf libfreetype6 armhf 2.6.3-3ubuntu1 [272 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main armhf libfontconfig1 armhf 2.11.94-0ubuntu2 [115 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main armhf fontconfig armhf 2.11.94-0ubuntu2 [177 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main armhf x11-common all 1:7.7+16ubuntu2 [21.9 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main armhf libice6 armhf 2:1.0.9-1 [32.7 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main armhf libjpeg-turbo8 armhf 1.5.1-0ubuntu1 [89.9 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main armhf libsm6 armhf 2:1.2.2-1 [13.9 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main armhf libunistring0 armhf 0.9.3-5.2ubuntu1 [250 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main armhf libxpm4 armhf 1:3.5.11-1 [28.6 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main armhf libjbig0 armhf 2.1-3.1 [24.3 kB] Get:27 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libmagic-mgc armhf 1:5.29-2 [180 kB] Get:28 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libmagic1 armhf 1:5.29-2 [62.9 kB] Get:29 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf file armhf 1:5.29-2 [21.5 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main armhf gettext-base armhf 0.19.8.1-1ubuntu2 [45.0 kB] Get:31 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libedit2 armhf 3.1-20160903-2 [61.8 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main armhf libglib2.0-0 armhf 2.51.0-2 [999 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main armhf libicu57 armhf 57.1-5 [7423 kB] Get:34 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libxml2 armhf 2.9.4+dfsg1-2.1 [604 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main armhf libsigsegv2 armhf 2.10-5 [13.3 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main armhf m4 armhf 1.4.17-5 [179 kB] Get:37 http://ftpmaster.internal/ubuntu zesty/main armhf autoconf all 2.69-10 [321 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main armhf autotools-dev all 20161112.1 [39.5 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main armhf automake all 1:1.15-5ubuntu1 [509 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main armhf autopoint all 0.19.8.1-1ubuntu2 [412 kB] Get:41 http://ftpmaster.internal/ubuntu zesty/main armhf libtool all 2.4.6-2 [194 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main armhf dh-autoreconf all 12 [15.8 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/main armhf libarchive-zip-perl all 1.59-1 [84.0 kB] Get:44 http://ftpmaster.internal/ubuntu zesty/main armhf libfile-stripnondeterminism-perl all 0.028-1 [12.5 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main armhf dh-strip-nondeterminism all 0.028-1 [4820 B] Get:47 http://ftpmaster.internal/ubuntu zesty/main armhf libcroco3 armhf 0.6.11-2 [69.6 kB] Get:48 http://ftpmaster.internal/ubuntu zesty/main armhf gettext armhf 0.19.8.1-1ubuntu2 [1016 kB] Get:49 http://ftpmaster.internal/ubuntu zesty/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:50 http://ftpmaster.internal/ubuntu zesty/main armhf po-debconf all 1.0.20 [232 kB] Get:51 http://ftpmaster.internal/ubuntu zesty/main armhf debhelper all 10.2.2ubuntu1 [742 kB] Get:52 http://ftpmaster.internal/ubuntu zesty/universe armhf dh-linktree all 0.4 [11.0 kB] Get:53 http://ftpmaster.internal/ubuntu zesty/main armhf libllvm3.9 armhf 1:3.9.1-1ubuntu1 [10.3 MB] Get:54 http://ftpmaster.internal/ubuntu zesty/main armhf libclang1-3.9 armhf 1:3.9.1-1ubuntu1 [5281 kB] Get:55 http://ftpmaster.internal/ubuntu zesty/main armhf doxygen armhf 1.8.12-1ubuntu1 [3252 kB] Get:56 http://ftpmaster.internal/ubuntu zesty/main armhf libcdt5 armhf 2.38.0-15ubuntu2 [16.7 kB] Get:57 http://ftpmaster.internal/ubuntu zesty/main armhf libcgraph6 armhf 2.38.0-15ubuntu2 [33.3 kB] Get:58 http://ftpmaster.internal/ubuntu zesty/main armhf libjpeg8 armhf 8c-2ubuntu8 [2202 B] Get:59 http://ftpmaster.internal/ubuntu zesty/main armhf libtiff5 armhf 4.0.7-3 [131 kB] Get:60 http://ftpmaster.internal/ubuntu zesty/main armhf libwebp6 armhf 0.5.1-4 [142 kB] Get:61 http://ftpmaster.internal/ubuntu zesty/main armhf libgd3 armhf 2.2.3-87-gd0fec80-3 [101 kB] Get:62 http://ftpmaster.internal/ubuntu zesty/main armhf libpixman-1-0 armhf 0.34.0-1 [156 kB] Get:63 http://ftpmaster.internal/ubuntu zesty/main armhf libxcb-render0 armhf 1.11.1-1ubuntu1 [10.9 kB] Get:64 http://ftpmaster.internal/ubuntu zesty/main armhf libxcb-shm0 armhf 1.11.1-1ubuntu1 [5398 B] Get:65 http://ftpmaster.internal/ubuntu zesty/main armhf libxrender1 armhf 1:0.9.10-1 [15.6 kB] Get:66 http://ftpmaster.internal/ubuntu zesty/main armhf libcairo2 armhf 1.14.8-1 [489 kB] Get:67 http://ftpmaster.internal/ubuntu zesty/main armhf libltdl7 armhf 2.4.6-2 [35.8 kB] Get:68 http://ftpmaster.internal/ubuntu zesty/main armhf libthai-data all 0.1.26-1 [131 kB] Get:69 http://ftpmaster.internal/ubuntu zesty/main armhf libdatrie1 armhf 0.2.10-4 [14.0 kB] Get:70 http://ftpmaster.internal/ubuntu zesty/main armhf libthai0 armhf 0.1.26-1 [14.2 kB] Get:71 http://ftpmaster.internal/ubuntu zesty/main armhf libpango-1.0-0 armhf 1.40.3-3 [133 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main armhf libgraphite2-3 armhf 1.3.9-2 [57.3 kB] Get:73 http://ftpmaster.internal/ubuntu zesty/main armhf libharfbuzz0b armhf 1.2.7-1 [158 kB] Get:74 http://ftpmaster.internal/ubuntu zesty/main armhf libpangoft2-1.0-0 armhf 1.40.3-3 [28.4 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main armhf libpangocairo-1.0-0 armhf 1.40.3-3 [17.4 kB] Get:76 http://ftpmaster.internal/ubuntu zesty/main armhf libpathplan4 armhf 2.38.0-15ubuntu2 [20.2 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main armhf libgvc6 armhf 2.38.0-15ubuntu2 [495 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main armhf libgvpr2 armhf 2.38.0-15ubuntu2 [146 kB] Get:79 http://ftpmaster.internal/ubuntu zesty/main armhf libxt6 armhf 1:1.1.5-1 [129 kB] Get:80 http://ftpmaster.internal/ubuntu zesty/main armhf libxmu6 armhf 2:1.1.2-2 [38.3 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main armhf libxaw7 armhf 2:1.0.13-1 [141 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main armhf graphviz armhf 2.38.0-15ubuntu2 [613 kB] Get:83 http://ftpmaster.internal/ubuntu zesty/universe armhf libargtable2-0 armhf 13-1 [12.0 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/universe armhf libargtable2-docs all 13-1 [2618 kB] Get:85 http://ftpmaster.internal/ubuntu zesty/universe armhf libargtable2-dev armhf 13-1 [50.6 kB] Get:86 http://ftpmaster.internal/ubuntu zesty-proposed/main armhf libjs-jquery all 3.1.1-2 [151 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main armhf libjs-underscore all 1.8.3~dfsg-1 [59.9 kB] Get:88 http://ftpmaster.internal/ubuntu zesty/main armhf libjs-sphinxdoc all 1.4.9-2 [69.5 kB] Get:89 http://ftpmaster.internal/ubuntu zesty/main armhf sphinx-common all 1.4.9-2 [350 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 43.8 MB in 3s (13.3 MB/s) Selecting previously unselected package libxau6:armhf. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13865 files and directories currently installed.) Preparing to unpack .../00-libxau6_1%3a1.0.8-1_armhf.deb ... Unpacking libxau6:armhf (1:1.0.8-1) ... Selecting previously unselected package libxdmcp6:armhf. Preparing to unpack .../01-libxdmcp6_1%3a1.1.2-1.1_armhf.deb ... Unpacking libxdmcp6:armhf (1:1.1.2-1.1) ... Selecting previously unselected package libxcb1:armhf. Preparing to unpack .../02-libxcb1_1.11.1-1ubuntu1_armhf.deb ... Unpacking libxcb1:armhf (1.11.1-1ubuntu1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../03-libx11-data_2%3a1.6.3-1ubuntu3_all.deb ... Unpacking libx11-data (2:1.6.3-1ubuntu3) ... Selecting previously unselected package libx11-6:armhf. Preparing to unpack .../04-libx11-6_2%3a1.6.3-1ubuntu3_armhf.deb ... Unpacking libx11-6:armhf (2:1.6.3-1ubuntu3) ... Selecting previously unselected package libxext6:armhf. Preparing to unpack .../05-libxext6_2%3a1.3.3-1_armhf.deb ... Unpacking libxext6:armhf (2:1.3.3-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.22.3-9_armhf.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:armhf. Preparing to unpack .../07-libbsd0_0.8.3-1_armhf.deb ... Unpacking libbsd0:armhf (0.8.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../08-bsdmainutils_9.0.12ubuntu1_armhf.deb ... Unpacking bsdmainutils (9.0.12ubuntu1) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../09-libpipeline1_1.4.1-2_armhf.deb ... Unpacking libpipeline1:armhf (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.7.6.1-2_armhf.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../11-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package ucf. Preparing to unpack .../12-ucf_3.0036_all.deb ... Moving old data out of the way Unpacking ucf (3.0036) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../13-fontconfig-config_2.11.94-0ubuntu2_all.deb ... Unpacking fontconfig-config (2.11.94-0ubuntu2) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../14-libexpat1_2.2.0-1_armhf.deb ... Unpacking libexpat1:armhf (2.2.0-1) ... Selecting previously unselected package libfreetype6:armhf. Preparing to unpack .../15-libfreetype6_2.6.3-3ubuntu1_armhf.deb ... Unpacking libfreetype6:armhf (2.6.3-3ubuntu1) ... Selecting previously unselected package libfontconfig1:armhf. Preparing to unpack .../16-libfontconfig1_2.11.94-0ubuntu2_armhf.deb ... Unpacking libfontconfig1:armhf (2.11.94-0ubuntu2) ... Selecting previously unselected package fontconfig. Preparing to unpack .../17-fontconfig_2.11.94-0ubuntu2_armhf.deb ... Unpacking fontconfig (2.11.94-0ubuntu2) ... Selecting previously unselected package x11-common. Preparing to unpack .../18-x11-common_1%3a7.7+16ubuntu2_all.deb ... Unpacking x11-common (1:7.7+16ubuntu2) ... Selecting previously unselected package libice6:armhf. Preparing to unpack .../19-libice6_2%3a1.0.9-1_armhf.deb ... Unpacking libice6:armhf (2:1.0.9-1) ... Selecting previously unselected package libjpeg-turbo8:armhf. Preparing to unpack .../20-libjpeg-turbo8_1.5.1-0ubuntu1_armhf.deb ... Unpacking libjpeg-turbo8:armhf (1.5.1-0ubuntu1) ... Selecting previously unselected package libsm6:armhf. Preparing to unpack .../21-libsm6_2%3a1.2.2-1_armhf.deb ... Unpacking libsm6:armhf (2:1.2.2-1) ... Selecting previously unselected package libunistring0:armhf. Preparing to unpack .../22-libunistring0_0.9.3-5.2ubuntu1_armhf.deb ... Unpacking libunistring0:armhf (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libxpm4:armhf. Preparing to unpack .../23-libxpm4_1%3a3.5.11-1_armhf.deb ... Unpacking libxpm4:armhf (1:3.5.11-1) ... Selecting previously unselected package libjbig0:armhf. Preparing to unpack .../24-libjbig0_2.1-3.1_armhf.deb ... Unpacking libjbig0:armhf (2.1-3.1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../25-libmagic-mgc_1%3a5.29-2_armhf.deb ... Unpacking libmagic-mgc (1:5.29-2) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../26-libmagic1_1%3a5.29-2_armhf.deb ... Unpacking libmagic1:armhf (1:5.29-2) ... Selecting previously unselected package file. Preparing to unpack .../27-file_1%3a5.29-2_armhf.deb ... Unpacking file (1:5.29-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../28-gettext-base_0.19.8.1-1ubuntu2_armhf.deb ... Unpacking gettext-base (0.19.8.1-1ubuntu2) ... Selecting previously unselected package libedit2:armhf. Preparing to unpack .../29-libedit2_3.1-20160903-2_armhf.deb ... Unpacking libedit2:armhf (3.1-20160903-2) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../30-libglib2.0-0_2.51.0-2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.51.0-2) ... Selecting previously unselected package libicu57:armhf. Preparing to unpack .../31-libicu57_57.1-5_armhf.deb ... Unpacking libicu57:armhf (57.1-5) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../32-libxml2_2.9.4+dfsg1-2.1_armhf.deb ... Unpacking libxml2:armhf (2.9.4+dfsg1-2.1) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../33-libsigsegv2_2.10-5_armhf.deb ... Unpacking libsigsegv2:armhf (2.10-5) ... Selecting previously unselected package m4. Preparing to unpack .../34-m4_1.4.17-5_armhf.deb ... Unpacking m4 (1.4.17-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../35-autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../36-autotools-dev_20161112.1_all.deb ... Unpacking autotools-dev (20161112.1) ... Selecting previously unselected package automake. Preparing to unpack .../37-automake_1%3a1.15-5ubuntu1_all.deb ... Unpacking automake (1:1.15-5ubuntu1) ... Selecting previously unselected package autopoint. Preparing to unpack .../38-autopoint_0.19.8.1-1ubuntu2_all.deb ... Unpacking autopoint (0.19.8.1-1ubuntu2) ... Selecting previously unselected package libtool. Preparing to unpack .../39-libtool_2.4.6-2_all.deb ... Unpacking libtool (2.4.6-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../40-dh-autoreconf_12_all.deb ... Unpacking dh-autoreconf (12) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../41-libarchive-zip-perl_1.59-1_all.deb ... Unpacking libarchive-zip-perl (1.59-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../42-libfile-stripnondeterminism-perl_0.028-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.028-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../43-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../44-dh-strip-nondeterminism_0.028-1_all.deb ... Unpacking dh-strip-nondeterminism (0.028-1) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../45-libcroco3_0.6.11-2_armhf.deb ... Unpacking libcroco3:armhf (0.6.11-2) ... Selecting previously unselected package gettext. Preparing to unpack .../46-gettext_0.19.8.1-1ubuntu2_armhf.deb ... Unpacking gettext (0.19.8.1-1ubuntu2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../47-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../48-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../49-debhelper_10.2.2ubuntu1_all.deb ... Unpacking debhelper (10.2.2ubuntu1) ... Selecting previously unselected package dh-linktree. Preparing to unpack .../50-dh-linktree_0.4_all.deb ... Unpacking dh-linktree (0.4) ... Selecting previously unselected package libllvm3.9:armhf. Preparing to unpack .../51-libllvm3.9_1%3a3.9.1-1ubuntu1_armhf.deb ... Unpacking libllvm3.9:armhf (1:3.9.1-1ubuntu1) ... Selecting previously unselected package libclang1-3.9:armhf. Preparing to unpack .../52-libclang1-3.9_1%3a3.9.1-1ubuntu1_armhf.deb ... Unpacking libclang1-3.9:armhf (1:3.9.1-1ubuntu1) ... Selecting previously unselected package doxygen. Preparing to unpack .../53-doxygen_1.8.12-1ubuntu1_armhf.deb ... Unpacking doxygen (1.8.12-1ubuntu1) ... Selecting previously unselected package libcdt5. Preparing to unpack .../54-libcdt5_2.38.0-15ubuntu2_armhf.deb ... Unpacking libcdt5 (2.38.0-15ubuntu2) ... Selecting previously unselected package libcgraph6. Preparing to unpack .../55-libcgraph6_2.38.0-15ubuntu2_armhf.deb ... Unpacking libcgraph6 (2.38.0-15ubuntu2) ... Selecting previously unselected package libjpeg8:armhf. Preparing to unpack .../56-libjpeg8_8c-2ubuntu8_armhf.deb ... Unpacking libjpeg8:armhf (8c-2ubuntu8) ... Selecting previously unselected package libtiff5:armhf. Preparing to unpack .../57-libtiff5_4.0.7-3_armhf.deb ... Unpacking libtiff5:armhf (4.0.7-3) ... Selecting previously unselected package libwebp6:armhf. Preparing to unpack .../58-libwebp6_0.5.1-4_armhf.deb ... Unpacking libwebp6:armhf (0.5.1-4) ... Selecting previously unselected package libgd3:armhf. Preparing to unpack .../59-libgd3_2.2.3-87-gd0fec80-3_armhf.deb ... Unpacking libgd3:armhf (2.2.3-87-gd0fec80-3) ... Selecting previously unselected package libpixman-1-0:armhf. Preparing to unpack .../60-libpixman-1-0_0.34.0-1_armhf.deb ... Unpacking libpixman-1-0:armhf (0.34.0-1) ... Selecting previously unselected package libxcb-render0:armhf. Preparing to unpack .../61-libxcb-render0_1.11.1-1ubuntu1_armhf.deb ... Unpacking libxcb-render0:armhf (1.11.1-1ubuntu1) ... Selecting previously unselected package libxcb-shm0:armhf. Preparing to unpack .../62-libxcb-shm0_1.11.1-1ubuntu1_armhf.deb ... Unpacking libxcb-shm0:armhf (1.11.1-1ubuntu1) ... Selecting previously unselected package libxrender1:armhf. Preparing to unpack .../63-libxrender1_1%3a0.9.10-1_armhf.deb ... Unpacking libxrender1:armhf (1:0.9.10-1) ... Selecting previously unselected package libcairo2:armhf. Preparing to unpack .../64-libcairo2_1.14.8-1_armhf.deb ... Unpacking libcairo2:armhf (1.14.8-1) ... Selecting previously unselected package libltdl7:armhf. Preparing to unpack .../65-libltdl7_2.4.6-2_armhf.deb ... Unpacking libltdl7:armhf (2.4.6-2) ... Selecting previously unselected package libthai-data. Preparing to unpack .../66-libthai-data_0.1.26-1_all.deb ... Unpacking libthai-data (0.1.26-1) ... Selecting previously unselected package libdatrie1:armhf. Preparing to unpack .../67-libdatrie1_0.2.10-4_armhf.deb ... Unpacking libdatrie1:armhf (0.2.10-4) ... Selecting previously unselected package libthai0:armhf. Preparing to unpack .../68-libthai0_0.1.26-1_armhf.deb ... Unpacking libthai0:armhf (0.1.26-1) ... Selecting previously unselected package libpango-1.0-0:armhf. Preparing to unpack .../69-libpango-1.0-0_1.40.3-3_armhf.deb ... Unpacking libpango-1.0-0:armhf (1.40.3-3) ... Selecting previously unselected package libgraphite2-3:armhf. Preparing to unpack .../70-libgraphite2-3_1.3.9-2_armhf.deb ... Unpacking libgraphite2-3:armhf (1.3.9-2) ... Selecting previously unselected package libharfbuzz0b:armhf. Preparing to unpack .../71-libharfbuzz0b_1.2.7-1_armhf.deb ... Unpacking libharfbuzz0b:armhf (1.2.7-1) ... Selecting previously unselected package libpangoft2-1.0-0:armhf. Preparing to unpack .../72-libpangoft2-1.0-0_1.40.3-3_armhf.deb ... Unpacking libpangoft2-1.0-0:armhf (1.40.3-3) ... Selecting previously unselected package libpangocairo-1.0-0:armhf. Preparing to unpack .../73-libpangocairo-1.0-0_1.40.3-3_armhf.deb ... Unpacking libpangocairo-1.0-0:armhf (1.40.3-3) ... Selecting previously unselected package libpathplan4. Preparing to unpack .../74-libpathplan4_2.38.0-15ubuntu2_armhf.deb ... Unpacking libpathplan4 (2.38.0-15ubuntu2) ... Selecting previously unselected package libgvc6. Preparing to unpack .../75-libgvc6_2.38.0-15ubuntu2_armhf.deb ... Unpacking libgvc6 (2.38.0-15ubuntu2) ... Selecting previously unselected package libgvpr2. Preparing to unpack .../76-libgvpr2_2.38.0-15ubuntu2_armhf.deb ... Unpacking libgvpr2 (2.38.0-15ubuntu2) ... Selecting previously unselected package libxt6:armhf. Preparing to unpack .../77-libxt6_1%3a1.1.5-1_armhf.deb ... Unpacking libxt6:armhf (1:1.1.5-1) ... Selecting previously unselected package libxmu6:armhf. Preparing to unpack .../78-libxmu6_2%3a1.1.2-2_armhf.deb ... Unpacking libxmu6:armhf (2:1.1.2-2) ... Selecting previously unselected package libxaw7:armhf. Preparing to unpack .../79-libxaw7_2%3a1.0.13-1_armhf.deb ... Unpacking libxaw7:armhf (2:1.0.13-1) ... Selecting previously unselected package graphviz. Preparing to unpack .../80-graphviz_2.38.0-15ubuntu2_armhf.deb ... Unpacking graphviz (2.38.0-15ubuntu2) ... Selecting previously unselected package libargtable2-0. Preparing to unpack .../81-libargtable2-0_13-1_armhf.deb ... Unpacking libargtable2-0 (13-1) ... Selecting previously unselected package libargtable2-docs. Preparing to unpack .../82-libargtable2-docs_13-1_all.deb ... Unpacking libargtable2-docs (13-1) ... Selecting previously unselected package libargtable2-dev. Preparing to unpack .../83-libargtable2-dev_13-1_armhf.deb ... Unpacking libargtable2-dev (13-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../84-libjs-jquery_3.1.1-2_all.deb ... Unpacking libjs-jquery (3.1.1-2) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../85-libjs-underscore_1.8.3~dfsg-1_all.deb ... Unpacking libjs-underscore (1.8.3~dfsg-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../86-libjs-sphinxdoc_1.4.9-2_all.deb ... Unpacking libjs-sphinxdoc (1.4.9-2) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../87-sphinx-common_1.4.9-2_all.deb ... Unpacking sphinx-common (1.4.9-2) ... Selecting previously unselected package sbuild-build-depends-clustalo-dummy. Preparing to unpack .../88-sbuild-build-depends-clustalo-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-clustalo-dummy (0.invalid.0) ... Setting up libargtable2-docs (13-1) ... Setting up libargtable2-0 (13-1) ... Setting up libedit2:armhf (3.1-20160903-2) ... Setting up libjs-jquery (3.1.1-2) ... Setting up libpathplan4 (2.38.0-15ubuntu2) ... Setting up libexpat1:armhf (2.2.0-1) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libjs-underscore (1.8.3~dfsg-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libjbig0:armhf (2.1-3.1) ... Setting up libsigsegv2:armhf (2.10-5) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:armhf (2.51.0-2) ... No schema files found: doing nothing. Setting up libllvm3.9:armhf (1:3.9.1-1ubuntu1) ... Setting up libjs-sphinxdoc (1.4.9-2) ... Setting up libdatrie1:armhf (0.2.10-4) ... Setting up gettext-base (0.19.8.1-1ubuntu2) ... Setting up libjpeg-turbo8:armhf (1.5.1-0ubuntu1) ... Setting up libpipeline1:armhf (1.4.1-2) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:armhf (57.1-5) ... Setting up libbsd0:armhf (0.8.3-1) ... Setting up ucf (3.0036) ... Setting up libxml2:armhf (2.9.4+dfsg1-2.1) ... Setting up libfreetype6:armhf (2.6.3-3ubuntu1) ... Setting up libmagic-mgc (1:5.29-2) ... Setting up libmagic1:armhf (1:5.29-2) ... Setting up libgraphite2-3:armhf (1.3.9-2) ... Setting up libcroco3:armhf (0.6.11-2) ... Setting up libpixman-1-0:armhf (0.34.0-1) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up libunistring0:armhf (0.9.3-5.2ubuntu1) ... Setting up libclang1-3.9:armhf (1:3.9.1-1ubuntu1) ... Processing triggers for systemd (232-8) ... Setting up libltdl7:armhf (2.4.6-2) ... Setting up sphinx-common (1.4.9-2) ... Setting up libargtable2-dev (13-1) ... Setting up libthai-data (0.1.26-1) ... Setting up libxdmcp6:armhf (1:1.1.2-1.1) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up x11-common (1:7.7+16ubuntu2) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up libcdt5 (2.38.0-15ubuntu2) ... Setting up libx11-data (2:1.6.3-1ubuntu3) ... Setting up libxau6:armhf (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libcgraph6 (2.38.0-15ubuntu2) ... Setting up libwebp6:armhf (0.5.1-4) ... Setting up libfile-stripnondeterminism-perl (0.028-1) ... Setting up libjpeg8:armhf (8c-2ubuntu8) ... Setting up fontconfig-config (2.11.94-0ubuntu2) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up libgvpr2 (2.38.0-15ubuntu2) ... Setting up doxygen (1.8.12-1ubuntu1) ... Setting up libharfbuzz0b:armhf (1.2.7-1) ... Setting up libtiff5:armhf (4.0.7-3) ... Setting up autoconf (2.69-10) ... Setting up libthai0:armhf (0.1.26-1) ... Setting up file (1:5.29-2) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-5ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:armhf (2:1.0.9-1) ... Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxcb1:armhf (1.11.1-1ubuntu1) ... Setting up libtool (2.4.6-2) ... Setting up libfontconfig1:armhf (2.11.94-0ubuntu2) ... Setting up libsm6:armhf (2:1.2.2-1) ... Setting up libxcb-render0:armhf (1.11.1-1ubuntu1) ... Setting up po-debconf (1.0.20) ... Setting up libx11-6:armhf (2:1.6.3-1ubuntu3) ... Setting up libxcb-shm0:armhf (1.11.1-1ubuntu1) ... Setting up libxpm4:armhf (1:3.5.11-1) ... Setting up libxt6:armhf (1:1.1.5-1) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up fontconfig (2.11.94-0ubuntu2) ... Regenerating fonts cache... done. Setting up libxext6:armhf (2:1.3.3-1) ... Setting up libgd3:armhf (2.2.3-87-gd0fec80-3) ... Setting up libxmu6:armhf (2:1.1.2-2) ... Setting up libpango-1.0-0:armhf (1.40.3-3) ... Setting up libxaw7:armhf (2:1.0.13-1) ... Setting up libcairo2:armhf (1.14.8-1) ... Setting up libpangoft2-1.0-0:armhf (1.40.3-3) ... Setting up libpangocairo-1.0-0:armhf (1.40.3-3) ... Setting up libgvc6 (2.38.0-15ubuntu2) ... Setting up graphviz (2.38.0-15ubuntu2) ... Setting up dh-autoreconf (12) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up dh-linktree (0.4) ... Setting up dh-strip-nondeterminism (0.028-1) ... Setting up sbuild-build-depends-clustalo-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-7ubuntu2) ... Processing triggers for systemd (232-8) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-57-generic arm64 (armv7l) Toolchain package versions: binutils_2.27.51.20161220-1ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.2.1-7ubuntu1 gcc-6_6.2.1-7ubuntu1 libc6-dev_2.24-7ubuntu2 libstdc++-6-dev_6.2.1-7ubuntu1 libstdc++6_6.2.1-7ubuntu1 linux-libc-dev_4.9.0-11.12 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.23-1 apt_1.4~beta2 apt-transport-https_1.4~beta2 autoconf_2.69-10 automake_1:1.15-5ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20161112.1 base-files_9.6ubuntu9 base-passwd_3.5.42 bash_4.4-2ubuntu1 binutils_2.27.51.20161220-1ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu2 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20161130 coreutils_8.25-2ubuntu2 cpp_4:6.2.1-1ubuntu1 cpp-6_6.2.1-7ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8.1 dh-autoreconf_12 dh-linktree_0.4 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dmsetup_2:1.02.136-1ubuntu1 doxygen_1.8.12-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.29-2 findutils_4.6.0+git+20161106-1 fontconfig_2.11.94-0ubuntu2 fontconfig-config_2.11.94-0ubuntu2 fonts-dejavu-core_2.37-1 g++_4:6.2.1-1ubuntu1 g++-6_6.2.1-7ubuntu1 gcc_4:6.2.1-1ubuntu1 gcc-6_6.2.1-7ubuntu1 gcc-6-base_6.2.1-7ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 graphviz_2.38.0-15ubuntu2 grep_2.27-1 groff-base_1.22.3-9 gzip_1.6-4ubuntu1 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3 libapparmor1_2.10.95-4ubuntu5.2 libapt-pkg5.0_1.4~beta2 libarchive-zip-perl_1.59-1 libargtable2-0_13-1 libargtable2-dev_13-1 libargtable2-docs_13-1 libasan3_6.2.1-7ubuntu1 libasn1-8-heimdal_1.7~git20160703+dfsg-1ubuntu1 libassuan0_2.4.3-2 libatomic1_6.2.1-7ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1ubuntu1 libaudit1_1:2.6.6-1ubuntu1 libblkid1_2.29-1ubuntu2 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8build1 libc-bin_2.24-7ubuntu2 libc-dev-bin_2.24-7ubuntu2 libc6_2.24-7ubuntu2 libc6-dev_2.24-7ubuntu2 libcairo2_1.14.8-1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.2.1-7ubuntu1 libcdt5_2.38.0-15ubuntu2 libcgraph6_2.38.0-15ubuntu2 libclang1-3.9_1:3.9.1-1ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.51.0-1ubuntu1 libdatrie1_0.2.10-4 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.136-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libedit2_3.1-20160903-2 libexpat1_2.2.0-1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu2 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libfontconfig1_2.11.94-0ubuntu2 libfreetype6_2.6.3-3ubuntu1 libgcc-6-dev_6.2.1-7ubuntu1 libgcc1_1:6.2.1-7ubuntu1 libgcrypt20_1.7.5-2 libgd3_2.2.3-87-gd0fec80-3 libgdbm3_1.8.3-14 libglib2.0-0_2.51.0-2 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.6-4ubuntu2 libgomp1_6.2.1-7ubuntu1 libgpg-error0_1.25-2 libgraphite2-3_1.3.9-2 libgssapi-krb5-2_1.15-1 libgssapi3-heimdal_1.7~git20160703+dfsg-1ubuntu1 libgvc6_2.38.0-15ubuntu2 libgvpr2_2.38.0-15ubuntu2 libharfbuzz0b_1.2.7-1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimbase1-heimdal_1.7~git20160703+dfsg-1ubuntu1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libhogweed4_3.3-1 libhx509-5-heimdal_1.7~git20160703+dfsg-1ubuntu1 libice6_2:1.0.9-1 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.17.1-1 libjbig0_2.1-3.1 libjpeg-turbo8_1.5.1-0ubuntu1 libjpeg8_8c-2ubuntu8 libjs-jquery_3.1.1-2 libjs-sphinxdoc_1.4.9-2 libjs-underscore_1.8.3~dfsg-1 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1ubuntu1 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.42+dfsg-2ubuntu5 libllvm3.9_1:3.9.1-1ubuntu1 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-2 libmagic1_1:5.29-2 libmount1_2.29-1ubuntu2 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpango-1.0-0_1.40.3-3 libpangocairo-1.0-0_1.40.3-3 libpangoft2-1.0-0_1.40.3-3 libpathplan4_2.38.0-15ubuntu2 libpcre3_2:8.39-2 libperl5.22_5.22.2-3 libperl5.24_5.24.1~rc4-1 libpipeline1_1.4.1-2 libpixman-1-0_0.34.0-1 libpng16-16_1.6.26-6 libprocps6_2:3.3.12-1ubuntu2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1ubuntu1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~72-g88d82a3+dfsg-1 libsasl2-modules-db_2.1.27~72-g88d82a3+dfsg-1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3 libsemanage-common_2.6-1 libsemanage1_2.6-1 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.29-1ubuntu2 libsqlite3-0_3.15.2-2 libss2_1.43.3-1 libssl1.0.0_1.0.2g-1ubuntu10 libstdc++-6-dev_6.2.1-7ubuntu1 libstdc++6_6.2.1-7ubuntu1 libsystemd0_232-8 libtasn1-6_4.9-4 libthai-data_0.1.26-1 libthai0_0.1.26-1 libtiff5_4.0.7-3 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_6.2.1-7ubuntu1 libudev1_232-8 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu2 libwebp6_0.5.1-4 libwind0-heimdal_1.7~git20160703+dfsg-1ubuntu1 libx11-6_2:1.6.3-1ubuntu3 libx11-data_2:1.6.3-1ubuntu3 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-render0_1.11.1-1ubuntu1 libxcb-shm0_1.11.1-1ubuntu1 libxcb1_1.11.1-1ubuntu1 libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxml2_2.9.4+dfsg1-2.1 libxmu6_2:1.1.2-2 libxpm4_1:3.5.11-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1 linux-libc-dev_4.9.0-11.12 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.29-1ubuntu2 multiarch-support_2.24-7ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu10 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.24.1~rc4-1 perl-base_5.24.1~rc4-1 perl-modules-5.22_5.22.2-3 perl-modules-5.24_5.24.1~rc4-1 pinentry-curses_1.0.0-1 pkg-create-dbgsym_0.73 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-clustalo-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 sphinx-common_1.4.9-2 systemd_232-8 systemd-sysv_232-8 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 tzdata_2016j-2 ubuntu-keyring_2016.10.27 ucf_3.0036 util-linux_2.29-1ubuntu2 x11-common_1:7.7+16ubuntu2 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-4ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Dec 21 20:08:05 2016 UTC gpgv: using RSA key gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./clustalo_1.2.4-1.dsc dpkg-source: info: extracting clustalo in clustalo-1.2.4 dpkg-source: info: unpacking clustalo_1.2.4.orig.tar.gz dpkg-source: info: unpacking clustalo_1.2.4-1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package clustalo dpkg-buildpackage: info: source version 1.2.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build clustalo-1.2.4 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with autoreconf --with linktree dh_testdir dh_auto_clean dh_autoreconf_clean debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f _configs.sed rm -rf doc make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --with autoreconf --with linktree dh_testdir -a dh_update_autotools_config -a dh_autoreconf -a configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:150: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:4170: _LT_LINKER_SHLIBS is expanded from... m4/libtool.m4:5249: _LT_LANG_C_CONFIG is expanded from... m4/libtool.m4:138: _LT_SETUP is expanded from... m4/libtool.m4:67: LT_INIT is expanded from... configure.ac:150: the top level configure.ac:172: warning: AC_LANG_CONFTEST: no AC_LANG_SOURCE call detected in body ../../lib/autoconf/lang.m4:193: AC_LANG_CONFTEST is expanded from... ../../lib/autoconf/general.m4:2672: _AC_LINK_IFELSE is expanded from... ../../lib/autoconf/general.m4:2689: AC_LINK_IFELSE is expanded from... m4/libtool.m4:1022: _LT_SYS_MODULE_PATH_AIX is expanded from... m4/libtool.m4:5356: _LT_LANG_CXX_CONFIG is expanded from... m4/libtool.m4:785: _LT_LANG is expanded from... m4/libtool.m4:768: LT_LANG is expanded from... configure.ac:172: the top level libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:133: installing './compile' configure.ac:115: installing './missing' src/Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode configure: Welcome to Clustal Omega - version 1.2.4 (AndreaGiacomo) +NMMMMMMMMMS= MMMMM? :MMMMM8 IMMMMS MMMMM, ~MMMMN ,MMMMM =MMMMM MMMMM ?MMMMM +MMMMM MMMMMS MMMMM MMMMM MMMMM: MMMMM MMMMM+ MMMMM MMMMM~ MMMMM MMMMM MMMMMZ MMMMM MMMMM ,MMMMZ MMMM8 MMMM+ MMMMS MMMM, MMMMO MMMM ,N SMMM MMM8 +8 ,M7 M+ M+ :M8 ,MMMMMMMMMMMMI MMMMMMMMMMMM8 ,MMMMMMMMMMMM8 MMMMMMMMMMMM8 ,MMMMMMMMMMMMN MMMMMMMMMMMM8 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for style of include used by make... GNU checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking build system type... arm-unknown-linux-gnueabihf checking host system type... arm-unknown-linux-gnueabihf checking whether make sets $(MAKE)... (cached) yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert arm-unknown-linux-gnueabihf file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert arm-unknown-linux-gnueabihf file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... no checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking whether gcc understands -c and -o together... (cached) yes checking dependency style of gcc... (cached) none checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... no checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking how to run the C++ preprocessor... g++ -E checking for ANSI C header files... (cached) yes checking assert.h usability... yes checking assert.h presence... yes checking for assert.h... yes checking ctype.h usability... yes checking ctype.h presence... yes checking for ctype.h... yes checking float.h usability... yes checking float.h presence... yes checking for float.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking math.h usability... yes checking math.h presence... yes checking for math.h... yes checking for memory.h... (cached) yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdio.h usability... yes checking stdio.h presence... yes checking for stdio.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... yes checking for inline... inline checking for log in -lm... yes checking for log2 in -lm... yes checking argtable2.h usability... yes checking argtable2.h presence... yes checking for argtable2.h... yes checking for arg_parse in -largtable2... yes checking for OpenMP flag of C compiler... -fopenmp checking whether byte ordering is bigendian... no checking for ntohs... yes checking for ntohl... yes checking for ntons... no checking for ntonl... no checking size of unsigned short... 2 checking size of unsigned int... 4 checking size of unsigned long... 4 checking size of unsigned long long... 8 checking for stroul... no checking for strtoull... yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for off_t... yes checking size of fpos_t... 12 checking if malloc debugging is wanted... no checking whether to build with debug information... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating clustalo.pc config.status: creating Doxyfile config.status: creating src/clustal/Makefile config.status: creating src/hhalign/Makefile config.status: creating src/kmpp/Makefile config.status: creating src/squid/Makefile config.status: creating src/config.h config.status: executing src/clustal-omega-config.h commands config.status: creating src/clustal-omega-config.h - prefix CLUSTAL_OMEGA for src/config.h defines config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j4 make[1]: Entering directory '/<>' Making all in src make[2]: Entering directory '/<>/src' make all-recursive make[3]: Entering directory '/<>/src' Making all in hhalign make[4]: Entering directory '/<>/src/hhalign' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o hhalign.lo hhalign.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hhalign.cpp -fPIC -DPIC -o .libs/hhalign.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hhalign.cpp -fPIE -o hhalign.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=link g++ -fno-strict-aliasing -DCLUSTALO -DCLUSTALO_NOFILE -DDEFAULT_FILTER=90 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o libhhalign.la hhalign.lo -largtable2 -lm libtool: link: ar cru .libs/libhhalign.a .libs/hhalign.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libhhalign.a libtool: link: ( cd ".libs" && rm -f "libhhalign.la" && ln -s "../libhhalign.la" "libhhalign.la" ) make[4]: Leaving directory '/<>/src/hhalign' Making all in squid make[4]: Entering directory '/<>/src/squid' /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o a2m.lo a2m.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o aligneval.lo aligneval.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o alignio.lo alignio.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o clustal.lo clustal.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -fPIC -DPIC -o .libs/aligneval.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -fPIC -DPIC -o .libs/a2m.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal.c -fPIC -DPIC -o .libs/clustal.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignio.c -fPIC -DPIC -o .libs/alignio.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c a2m.c -fPIE -o a2m.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c aligneval.c -fPIE -o aligneval.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o cluster.lo cluster.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal.c -fPIE -o clustal.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.c -fPIC -DPIC -o .libs/cluster.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c alignio.c -fPIE -o alignio.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o dayhoff.lo dayhoff.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dayhoff.c -fPIC -DPIC -o .libs/dayhoff.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o eps.lo eps.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c cluster.c -fPIE -o cluster.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c dayhoff.c -fPIE -o dayhoff.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c eps.c -fPIC -DPIC -o .libs/eps.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o file.lo file.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c eps.c -fPIE -o eps.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o getopt.lo getopt.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c file.c -fPIC -DPIC -o .libs/file.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c getopt.c -fPIC -DPIC -o .libs/getopt.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o gki.lo gki.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o gsi.lo gsi.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gki.c -fPIC -DPIC -o .libs/gki.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c file.c -fPIE -o file.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gsi.c -fPIC -DPIC -o .libs/gsi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c getopt.c -fPIE -o getopt.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o gsi64.lo gsi64.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gki.c -fPIE -o gki.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o hsregex.lo hsregex.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gsi64.c -fPIC -DPIC -o .libs/gsi64.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gsi64.c -fPIE -o gsi64.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c gsi.c -fPIE -o gsi.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o iupac.lo iupac.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hsregex.c -fPIC -DPIC -o .libs/hsregex.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c iupac.c -fPIC -DPIC -o .libs/iupac.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o msa.lo msa.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c iupac.c -fPIE -o iupac.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.c -fPIC -DPIC -o .libs/msa.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o msf.lo msf.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o phylip.lo phylip.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c msf.c -fPIC -DPIC -o .libs/msf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylip.c -fPIC -DPIC -o .libs/phylip.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c phylip.c -fPIE -o phylip.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hsregex.c -fPIE -o hsregex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c msf.c -fPIE -o msf.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o revcomp.lo revcomp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c revcomp.c -fPIC -DPIC -o .libs/revcomp.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c revcomp.c -fPIE -o revcomp.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o rk.lo rk.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.c -fPIE -o msa.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o selex.lo selex.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c rk.c -fPIC -DPIC -o .libs/rk.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c selex.c -fPIC -DPIC -o .libs/selex.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o seqencode.lo seqencode.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c rk.c -fPIE -o rk.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c seqencode.c -fPIC -DPIC -o .libs/seqencode.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o shuffle.lo shuffle.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c shuffle.c -fPIC -DPIC -o .libs/shuffle.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c seqencode.c -fPIE -o seqencode.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sqerror.lo sqerror.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sqerror.c -fPIC -DPIC -o .libs/sqerror.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sqio.lo sqio.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c selex.c -fPIE -o selex.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sqerror.c -fPIE -o sqerror.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c shuffle.c -fPIE -o shuffle.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sqio.c -fPIC -DPIC -o .libs/sqio.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o squidcore.lo squidcore.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c squidcore.c -fPIC -DPIC -o .libs/squidcore.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c squidcore.c -fPIE -o squidcore.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_ctype.lo sre_ctype.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_ctype.c -fPIC -DPIC -o .libs/sre_ctype.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_math.lo sre_math.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_ctype.c -fPIE -o sre_ctype.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_math.c -fPIC -DPIC -o .libs/sre_math.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_random.lo sre_random.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_random.c -fPIC -DPIC -o .libs/sre_random.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o sre_string.lo sre_string.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_math.c -fPIE -o sre_math.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_string.c -fPIC -DPIC -o .libs/sre_string.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_random.c -fPIE -o sre_random.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o ssi.lo ssi.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sre_string.c -fPIE -o sre_string.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o stack.lo stack.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ssi.c -fPIC -DPIC -o .libs/ssi.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stack.c -fPIC -DPIC -o .libs/stack.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stack.c -fPIE -o stack.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o stockholm.lo stockholm.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c sqio.c -fPIE -o sqio.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stockholm.c -fPIC -DPIC -o .libs/stockholm.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o stopwatch.lo stopwatch.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -fPIC -DPIC -o .libs/stopwatch.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stopwatch.c -fPIE -o stopwatch.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o translate.lo translate.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ssi.c -fPIE -o ssi.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -fPIC -DPIC -o .libs/translate.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c translate.c -fPIE -o translate.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c stockholm.c -fPIE -o stockholm.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o types.lo types.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -fPIC -DPIC -o .libs/types.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c types.c -fPIE -o types.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vectorops.lo vectorops.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o weight.lo weight.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vectorops.c -fPIC -DPIC -o .libs/vectorops.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -fPIC -DPIC -o .libs/weight.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c vectorops.c -fPIE -o vectorops.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c weight.c -fPIE -o weight.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=link gcc -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o libsquid.la a2m.lo aligneval.lo alignio.lo clustal.lo cluster.lo dayhoff.lo eps.lo file.lo getopt.lo gki.lo gsi.lo gsi64.lo hsregex.lo iupac.lo msa.lo msf.lo phylip.lo revcomp.lo rk.lo selex.lo seqencode.lo shuffle.lo sqerror.lo sqio.lo squidcore.lo sre_ctype.lo sre_math.lo sre_random.lo sre_string.lo ssi.lo stack.lo stockholm.lo stopwatch.lo translate.lo types.lo vectorops.lo weight.lo -largtable2 -lm libtool: link: ar cru .libs/libsquid.a .libs/a2m.o .libs/aligneval.o .libs/alignio.o .libs/clustal.o .libs/cluster.o .libs/dayhoff.o .libs/eps.o .libs/file.o .libs/getopt.o .libs/gki.o .libs/gsi.o .libs/gsi64.o .libs/hsregex.o .libs/iupac.o .libs/msa.o .libs/msf.o .libs/phylip.o .libs/revcomp.o .libs/rk.o .libs/selex.o .libs/seqencode.o .libs/shuffle.o .libs/sqerror.o .libs/sqio.o .libs/squidcore.o .libs/sre_ctype.o .libs/sre_math.o .libs/sre_random.o .libs/sre_string.o .libs/ssi.o .libs/stack.o .libs/stockholm.o .libs/stopwatch.o .libs/translate.o .libs/types.o .libs/vectorops.o .libs/weight.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libsquid.a libtool: link: ( cd ".libs" && rm -f "libsquid.la" && ln -s "../libsquid.la" "libsquid.la" ) make[4]: Leaving directory '/<>/src/squid' Making all in kmpp make[4]: Entering directory '/<>/src/kmpp' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o KMeans.lo KMeans.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o KmTree.lo KmTree.cpp /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o KmUtils.lo KmUtils.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c KmTree.cpp -fPIC -DPIC -o .libs/KmTree.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c KMeans.cpp -fPIC -DPIC -o .libs/KMeans.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c KmUtils.cpp -fPIC -DPIC -o .libs/KmUtils.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c KmUtils.cpp -fPIE -o KmUtils.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c KmTree.cpp -fPIE -o KmTree.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c KMeans.cpp -fPIE -o KMeans.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=link g++ -DCLUSTALO -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o libkmpp.la KMeans.lo KmTree.lo KmUtils.lo -largtable2 -lm libtool: link: ar cru .libs/libkmpp.a .libs/KMeans.o .libs/KmTree.o .libs/KmUtils.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libkmpp.a libtool: link: ( cd ".libs" && rm -f "libkmpp.la" && ln -s "../libkmpp.la" "libkmpp.la" ) make[4]: Leaving directory '/<>/src/kmpp' Making all in clustal make[4]: Entering directory '/<>/src/clustal' /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o hhalign_wrapper.lo hhalign_wrapper.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o ktuple_pair.lo ktuple_pair.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o list.lo list.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o log.lo log.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ktuple_pair.c -fPIC -DPIC -o .libs/ktuple_pair.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c log.c -fPIC -DPIC -o .libs/log.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hhalign_wrapper.c -fPIC -DPIC -o .libs/hhalign_wrapper.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c list.c -fPIC -DPIC -o .libs/list.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c log.c -fPIE -o log.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c list.c -fPIE -o list.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o muscle_upgma.lo muscle_upgma.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o muscle_tree.lo muscle_tree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c muscle_upgma.c -fPIC -DPIC -o .libs/muscle_upgma.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c muscle_tree.c -fPIC -DPIC -o .libs/muscle_tree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c ktuple_pair.c -fPIE -o ktuple_pair.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c muscle_upgma.c -fPIE -o muscle_upgma.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o mbed.lo mbed.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c mbed.c -fPIC -DPIC -o .libs/mbed.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o pair_dist.lo pair_dist.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c muscle_tree.c -fPIE -o muscle_tree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c pair_dist.c -fPIC -DPIC -o .libs/pair_dist.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c hhalign_wrapper.c -fPIE -o hhalign_wrapper.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c pair_dist.c -fPIE -o pair_dist.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c mbed.c -fPIE -o mbed.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o progress.lo progress.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c progress.c -fPIC -DPIC -o .libs/progress.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c progress.c -fPIE -o progress.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o seq.lo seq.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o symmatrix.lo symmatrix.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.c -fPIC -DPIC -o .libs/seq.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c symmatrix.c -fPIC -DPIC -o .libs/symmatrix.o /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o tree.lo tree.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c tree.c -fPIC -DPIC -o .libs/tree.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c tree.c -fPIE -o tree.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c symmatrix.c -fPIE -o symmatrix.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o util.lo util.c /bin/bash ../../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o weights.lo weights.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.c -fPIC -DPIC -o .libs/util.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c weights.c -fPIC -DPIC -o .libs/weights.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.c -fPIE -o seq.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c weights.c -fPIE -o weights.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c util.c -fPIE -o util.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CC --mode=link gcc -fopenmp -O3 -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o libclustal.la hhalign_wrapper.lo ktuple_pair.lo list.lo log.lo muscle_upgma.lo muscle_tree.lo mbed.lo pair_dist.lo progress.lo seq.lo symmatrix.lo tree.lo util.lo weights.lo -largtable2 -lm libtool: link: ar cru .libs/libclustal.a .libs/hhalign_wrapper.o .libs/ktuple_pair.o .libs/list.o .libs/log.o .libs/muscle_upgma.o .libs/muscle_tree.o .libs/mbed.o .libs/pair_dist.o .libs/progress.o .libs/seq.o .libs/symmatrix.o .libs/tree.o .libs/util.o .libs/weights.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libclustal.a libtool: link: ( cd ".libs" && rm -f "libclustal.la" && ln -s "../libclustal.la" "libclustal.la" ) make[4]: Leaving directory '/<>/src/clustal' make[4]: Entering directory '/<>/src' /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o clustal-omega.lo clustal-omega.c g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.cpp gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o mymain.o mymain.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal-omega.c -fPIC -DPIC -o .libs/clustal-omega.o clustal-omega.c: In function ‘PrintLongVersion’: clustal-omega.c:152:49: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] PACKAGE_VERSION, PACKAGE_CODENAME, __DATE__); ^~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c clustal-omega.c -fPIE -o clustal-omega.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -static -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o libclustalo.la -rpath /usr/lib/arm-linux-gnueabihf clustal-omega.lo clustal/libclustal.la hhalign/libhhalign.la squid/libsquid.la kmpp/libkmpp.la -largtable2 -lm libtool: link: (cd .libs/libclustalo.lax/libclustal.a && ar x "/<>/src/clustal/.libs/libclustal.a") libtool: link: (cd .libs/libclustalo.lax/libhhalign.a && ar x "/<>/src/hhalign/.libs/libhhalign.a") libtool: link: (cd .libs/libclustalo.lax/libsquid.a && ar x "/<>/src/squid/.libs/libsquid.a") libtool: link: (cd .libs/libclustalo.lax/libkmpp.a && ar x "/<>/src/kmpp/.libs/libkmpp.a") libtool: link: ar cru .libs/libclustalo.a clustal-omega.o .libs/libclustalo.lax/libclustal.a/hhalign_wrapper.o .libs/libclustalo.lax/libclustal.a/ktuple_pair.o .libs/libclustalo.lax/libclustal.a/list.o .libs/libclustalo.lax/libclustal.a/log.o .libs/libclustalo.lax/libclustal.a/mbed.o .libs/libclustalo.lax/libclustal.a/muscle_tree.o .libs/libclustalo.lax/libclustal.a/muscle_upgma.o .libs/libclustalo.lax/libclustal.a/pair_dist.o .libs/libclustalo.lax/libclustal.a/progress.o .libs/libclustalo.lax/libclustal.a/seq.o .libs/libclustalo.lax/libclustal.a/symmatrix.o .libs/libclustalo.lax/libclustal.a/tree.o .libs/libclustalo.lax/libclustal.a/util.o .libs/libclustalo.lax/libclustal.a/weights.o .libs/libclustalo.lax/libhhalign.a/hhalign.o .libs/libclustalo.lax/libsquid.a/a2m.o .libs/libclustalo.lax/libsquid.a/aligneval.o .libs/libclustalo.lax/libsquid.a/alignio.o .libs/libclustalo.lax/libsquid.a/clustal.o .libs/libclustalo.lax/libsquid.a/cluster.o .libs/libclustalo.lax/libsquid.a/dayhoff.o .libs/libclustalo.lax/libsquid.a/eps.o .libs/libclustalo.lax/libsquid.a/file.o .libs/libclustalo.lax/libsquid.a/getopt.o .libs/libclustalo.lax/libsquid.a/gki.o .libs/libclustalo.lax/libsquid.a/gsi.o .libs/libclustalo.lax/libsquid.a/gsi64.o .libs/libclustalo.lax/libsquid.a/hsregex.o .libs/libclustalo.lax/libsquid.a/iupac.o .libs/libclustalo.lax/libsquid.a/msa.o .libs/libclustalo.lax/libsquid.a/msf.o .libs/libclustalo.lax/libsquid.a/phylip.o .libs/libclustalo.lax/libsquid.a/revcomp.o .libs/libclustalo.lax/libsquid.a/rk.o .libs/libclustalo.lax/libsquid.a/selex.o .libs/libclustalo.lax/libsquid.a/seqencode.o .libs/libclustalo.lax/libsquid.a/shuffle.o .libs/libclustalo.lax/libsquid.a/sqerror.o .libs/libclustalo.lax/libsquid.a/sqio.o .libs/libclustalo.lax/libsquid.a/squidcore.o .libs/libclustalo.lax/libsquid.a/sre_ctype.o .libs/libclustalo.lax/libsquid.a/sre_math.o .libs/libclustalo.lax/libsquid.a/sre_random.o .libs/libclustalo.lax/libsquid.a/sre_string.o .libs/libclustalo.lax/libsquid.a/ssi.o .libs/libclustalo.lax/libsquid.a/stack.o .libs/libclustalo.lax/libsquid.a/stockholm.o .libs/libclustalo.lax/libsquid.a/stopwatch.o .libs/libclustalo.lax/libsquid.a/translate.o .libs/libclustalo.lax/libsquid.a/types.o .libs/libclustalo.lax/libsquid.a/vectorops.o .libs/libclustalo.lax/libsquid.a/weight.o .libs/libclustalo.lax/libkmpp.a/KMeans.o .libs/libclustalo.lax/libkmpp.a/KmTree.o .libs/libclustalo.lax/libkmpp.a/KmUtils.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libclustalo.a libtool: link: rm -fr .libs/libclustalo.lax libtool: link: ( cd ".libs" && rm -f "libclustalo.la" && ln -s "../libclustalo.la" "libclustalo.la" ) /bin/bash ../libtool --tag=CXX --mode=link g++ -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z,relro -Wl,-z,now -o clustalo main.o mymain.o libclustalo.la -largtable2 -lm libtool: link: g++ -O3 -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -fPIE -pie -Wl,-z -Wl,relro -Wl,-z -Wl,now -o clustalo main.o mymain.o ./.libs/libclustalo.a /usr/lib/arm-linux-gnueabihf/libargtable2.so -lm -fopenmp ./.libs/libclustalo.a(clustal-omega.o): In function `AlnToHHMFile': ./src/clustal-omega.c:393: warning: the use of `mktemp' is dangerous, better use `mkstemp' or `mkdtemp' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'all-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' Making check in src make[2]: Entering directory '/<>/src' Making check in hhalign make[3]: Entering directory '/<>/src/hhalign' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/hhalign' Making check in squid make[3]: Entering directory '/<>/src/squid' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/squid' Making check in kmpp make[3]: Entering directory '/<>/src/kmpp' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/kmpp' Making check in clustal make[3]: Entering directory '/<>/src/clustal' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/src/clustal' make[3]: Entering directory '/<>/src' make[3]: Leaving directory '/<>/src' make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' fakeroot debian/rules binary-arch dh binary-arch --with autoreconf --with linktree dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' dh_auto_install -a make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in src make[3]: Entering directory '/<>/src' Making install in hhalign make[4]: Entering directory '/<>/src/hhalign' make[5]: Entering directory '/<>/src/hhalign' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/hhalign' /usr/bin/install -c -m 644 general.h hhfunc.h '/<>/debian/tmp/usr/include/clustalo/hhalign' make[5]: Leaving directory '/<>/src/hhalign' make[4]: Leaving directory '/<>/src/hhalign' Making install in squid make[4]: Entering directory '/<>/src/squid' make[5]: Entering directory '/<>/src/squid' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/squid' /usr/bin/install -c -m 644 gki.h gsi64.h msa.h rk.h squid.h stopwatch.h sqfuncs.h sre_random.h ssi.h stockholm.h vectorops.h version.h '/<>/debian/tmp/usr/include/clustalo/squid' make[5]: Leaving directory '/<>/src/squid' make[4]: Leaving directory '/<>/src/squid' Making install in kmpp make[4]: Entering directory '/<>/src/kmpp' make[5]: Entering directory '/<>/src/kmpp' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/<>/src/kmpp' make[4]: Leaving directory '/<>/src/kmpp' Making install in clustal make[4]: Entering directory '/<>/src/clustal' make[5]: Entering directory '/<>/src/clustal' make[5]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/clustal' /usr/bin/install -c -m 644 hhalign_wrapper.h ktuple_pair.h log.h mbed.h muscle_tree.h pair_dist.h progress.h seq.h symmatrix.h tree.h util.h weights.h '/<>/debian/tmp/usr/include/clustalo/clustal' make[5]: Leaving directory '/<>/src/clustal' make[4]: Leaving directory '/<>/src/clustal' make[4]: Entering directory '/<>/src' make[5]: Entering directory '/<>/src' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/mkdir -p '/<>/debian/tmp/usr/include/clustalo/' /bin/bash ../libtool --mode=install /usr/bin/install -c libclustalo.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' /usr/bin/install -c -m 644 clustal-omega-config.h clustal-omega.h '/<>/debian/tmp/usr/include/clustalo/' libtool: install: /usr/bin/install -c .libs/libclustalo.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclustalo.la libtool: install: /usr/bin/install -c .libs/libclustalo.a /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclustalo.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclustalo.a libtool: install: ranlib /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libclustalo.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ../libtool --mode=install /usr/bin/install -c clustalo '/<>/debian/tmp/usr/bin' libtool: install: /usr/bin/install -c clustalo /<>/debian/tmp/usr/bin/clustalo make[5]: Leaving directory '/<>/src' make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/<>/debian/tmp/usr/share/doc/clustal-omega' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 README '/<>/debian/tmp/usr/share/doc/clustal-omega' /usr/bin/install -c -m 644 clustalo.pc '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' rm -rf debian/tmp/usr/lib/pkgconfig rm -f debian/tmp/usr/lib/*/libclustalo.la mv debian/tmp/usr/include debian/libclustalo-dev/usr mv debian/tmp/usr/lib debian/libclustalo-dev/usr mv debian/tmp/usr/bin debian/clustalo/usr make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_linktree -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: clustalo libclustalo-dev dh_strip debug symbol extraction: packages to act on: clustalo libclustalo-dev dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 libclustalo-dev has no unstripped objects, ignoring find: ‘/<>/debian/libclustalo-dev-dbgsym’: No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /<>/debian/libclustalo-dev-dbgsym and no dbgdepends, ignoring dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: Depends field of package libclustalo-dev: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform armhf: clustalo libclustalo-dev dh_gencontrol debug symbol wrapper: packages to act on: clustalo libclustalo-dev dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package clustalo (pkgdir debian/clustalo, ddeb package dir debian/clustalo-dbgsym) dh_gencontrol debug symbol wrapper: building clustalo-dbgsym_1.2.4-1_armhf.ddeb dpkg-deb: building package 'clustalo-dbgsym' in '../clustalo-dbgsym_1.2.4-1_armhf.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile clustalo-dbgsym_1.2.4-1_armhf.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: no debian/libclustalo-dev-dbgsym, skipping package libclustalo-dev dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing clustalo (in debian/clustalo); do_strip: , oemstrip: pkgstriptranslations: processing libclustalo-dev (in debian/libclustalo-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/clustalo/DEBIAN/control, package clustalo, directory debian/clustalo pkgstripfiles: Running PNG optimization (using 4 cpus) for package clustalo ... pkgstripfiles: processing control file: debian/libclustalo-dev/DEBIAN/control, package libclustalo-dev, directory debian/libclustalo-dev pkgstripfiles: No PNG files. dpkg-deb: building package 'clustalo' in '../clustalo_1.2.4-1_armhf.deb'. Searching for duplicated docs in dependency clustalo... symlinking changelog.Debian.gz in libclustalo-dev to file in clustalo pkgstripfiles: Running PNG optimization (using 4 cpus) for package libclustalo-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libclustalo-dev' in '../libclustalo-dev_1.2.4-1_armhf.deb'. dpkg-genchanges --build=any -mLaunchpad Build Daemon >../clustalo_1.2.4-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build clustalo-1.2.4 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20161222-0521 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ clustalo_1.2.4-1_armhf.changes: ------------------------------- Format: 1.8 Date: Wed, 21 Dec 2016 21:06:08 +0100 Source: clustalo Binary: clustalo libclustalo-dev libclustalo-doc Architecture: armhf Version: 1.2.4-1 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: clustalo - General purpose multiple sequence alignment program for proteins libclustalo-dev - library to embed Clustal Omega libclustalo-doc - API documentation for library to embed Clustal Omega Changes: clustalo (1.2.4-1) unstable; urgency=medium . * New upstream version * d/watch: version=4 * debhelper 10 Checksums-Sha1: af0be387a0c5962196eacf564825e7a22f1f429a 466984 clustalo-dbgsym_1.2.4-1_armhf.ddeb 7e8e2ae2b5f265c250d9724fa25b66dd29aa7e85 230348 clustalo_1.2.4-1_armhf.deb 9eb7cd2d5177a1049fb87c32bb58715014f9888d 281984 libclustalo-dev_1.2.4-1_armhf.deb Checksums-Sha256: 0ae5fce5bcea1b42bae1732915ee70f927459672048225805f9a86e76fbd39bb 466984 clustalo-dbgsym_1.2.4-1_armhf.ddeb 2be0043e48fccb1b0419cbe6c07b31cf6a353ee97b3d80e83a4255be0e007d1c 230348 clustalo_1.2.4-1_armhf.deb 031f396fdb21640d9b8648ed46fcc23139034be246de1e391a05c0b62196b9e0 281984 libclustalo-dev_1.2.4-1_armhf.deb Files: 5ae8287716aa0f21310264de0f3c2533 466984 science extra clustalo-dbgsym_1.2.4-1_armhf.ddeb 77b7583644ae2e7d3dc6e8addd2b4df0 230348 science optional clustalo_1.2.4-1_armhf.deb 7c945e76738ac7ee0d078fecd564859c 281984 libdevel optional libclustalo-dev_1.2.4-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ clustalo_1.2.4-1_armhf.deb -------------------------- new debian package, version 2.0. size 230348 bytes: control archive=815 bytes. 728 bytes, 15 lines control 406 bytes, 6 lines md5sums Package: clustalo Version: 1.2.4-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 428 Depends: libargtable2-0 (>= 7), libc6 (>= 2.4), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://www.clustal.org/omega/ Description: General purpose multiple sequence alignment program for proteins Clustal-Omega is a general purpose multiple sequence alignment (MSA) program for dna/rna/proteins. It produces high quality MSAs and is capable of handling data-sets of hundreds of thousands of sequences in reasonable time. drwxr-xr-x root/root 0 2016-12-21 20:06 ./ drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/ drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/bin/ -rwxr-xr-x root/root 408276 2016-12-21 20:06 ./usr/bin/clustalo drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/share/ drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/share/doc/clustalo/ -rw-r--r-- root/root 10994 2013-08-27 12:07 ./usr/share/doc/clustalo/README.gz -rw-r--r-- root/root 830 2016-12-21 20:06 ./usr/share/doc/clustalo/changelog.Debian.gz -rw-r--r-- root/root 1174 2016-12-21 20:06 ./usr/share/doc/clustalo/copyright drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/share/doc/clustalo/examples/ -rw-r--r-- root/root 2269 2016-12-21 20:06 ./usr/share/doc/clustalo/examples/example.fa drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/share/man/ drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/share/man/man1/ -rw-r--r-- root/root 1083 2016-12-21 20:06 ./usr/share/man/man1/clustalo.1.gz libclustalo-dev_1.2.4-1_armhf.deb --------------------------------- new debian package, version 2.0. size 281984 bytes: control archive=1464 bytes. 583 bytes, 16 lines control 2248 bytes, 31 lines md5sums Package: libclustalo-dev Source: clustalo Version: 1.2.4-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 811 Depends: libargtable2-dev, clustalo (= 1.2.4-1) Suggests: libclustalo-doc Section: libdevel Priority: optional Homepage: http://www.clustal.org/omega/ Description: library to embed Clustal Omega This package contains headers and libraries to include Clustal Omega in a program. It provides clustal usage with an API. drwxr-xr-x root/root 0 2016-12-21 20:06 ./ drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/ drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/include/ drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/include/clustalo/ -rw-r--r-- root/root 9523 2016-12-21 20:06 ./usr/include/clustalo/clustal-omega-config.h -rw-r--r-- root/root 4740 2016-12-21 20:06 ./usr/include/clustalo/clustal-omega.h drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/include/clustalo/clustal/ -rw-r--r-- root/root 1159 2016-12-21 20:06 ./usr/include/clustalo/clustal/hhalign_wrapper.h -rw-r--r-- root/root 1251 2016-12-21 20:06 ./usr/include/clustalo/clustal/ktuple_pair.h -rw-r--r-- root/root 1787 2016-12-21 20:06 ./usr/include/clustalo/clustal/log.h -rw-r--r-- root/root 866 2016-12-21 20:06 ./usr/include/clustalo/clustal/mbed.h -rw-r--r-- root/root 4112 2016-12-21 20:06 ./usr/include/clustalo/clustal/muscle_tree.h -rw-r--r-- root/root 1303 2016-12-21 20:06 ./usr/include/clustalo/clustal/pair_dist.h -rw-r--r-- root/root 1257 2016-12-21 20:06 ./usr/include/clustalo/clustal/progress.h -rw-r--r-- root/root 4032 2016-12-21 20:06 ./usr/include/clustalo/clustal/seq.h -rw-r--r-- root/root 2310 2016-12-21 20:06 ./usr/include/clustalo/clustal/symmatrix.h -rw-r--r-- root/root 1066 2016-12-21 20:06 ./usr/include/clustalo/clustal/tree.h -rw-r--r-- root/root 2308 2016-12-21 20:06 ./usr/include/clustalo/clustal/util.h -rw-r--r-- root/root 741 2016-12-21 20:06 ./usr/include/clustalo/clustal/weights.h drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/include/clustalo/hhalign/ -rw-r--r-- root/root 2961 2016-12-21 20:06 ./usr/include/clustalo/hhalign/general.h -rw-r--r-- root/root 859 2016-12-21 20:06 ./usr/include/clustalo/hhalign/hhfunc.h drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/include/clustalo/squid/ -rw-r--r-- root/root 1381 2016-12-21 20:06 ./usr/include/clustalo/squid/gki.h -rw-r--r-- root/root 3473 2016-12-21 20:06 ./usr/include/clustalo/squid/gsi64.h -rw-r--r-- root/root 13442 2016-12-21 20:06 ./usr/include/clustalo/squid/msa.h -rw-r--r-- root/root 1264 2016-12-21 20:06 ./usr/include/clustalo/squid/rk.h -rw-r--r-- root/root 10390 2016-12-21 20:06 ./usr/include/clustalo/squid/sqfuncs.h -rw-r--r-- root/root 19594 2016-12-21 20:06 ./usr/include/clustalo/squid/squid.h -rw-r--r-- root/root 489 2016-12-21 20:06 ./usr/include/clustalo/squid/sre_random.h -rw-r--r-- root/root 7610 2016-12-21 20:06 ./usr/include/clustalo/squid/ssi.h -rw-r--r-- root/root 1868 2016-12-21 20:06 ./usr/include/clustalo/squid/stockholm.h -rw-r--r-- root/root 1937 2016-12-21 20:06 ./usr/include/clustalo/squid/stopwatch.h -rw-r--r-- root/root 1434 2016-12-21 20:06 ./usr/include/clustalo/squid/vectorops.h -rw-r--r-- root/root 333 2016-12-21 20:06 ./usr/include/clustalo/squid/version.h drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/lib/ drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 691388 2016-12-21 20:06 ./usr/lib/arm-linux-gnueabihf/libclustalo.a drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/lib/arm-linux-gnueabihf/pkgconfig/ -rw-r--r-- root/root 250 2016-12-21 20:06 ./usr/lib/arm-linux-gnueabihf/pkgconfig/clustalo.pc drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/share/ drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-12-21 20:06 ./usr/share/doc/libclustalo-dev/ lrwxrwxrwx root/root 0 2016-12-21 20:06 ./usr/share/doc/libclustalo-dev/changelog.Debian.gz -> ../clustalo/changelog.Debian.gz -rw-r--r-- root/root 1174 2016-12-21 20:06 ./usr/share/doc/libclustalo-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 24796 Build-Time: 159 Distribution: zesty-proposed Host Architecture: armhf Install-Time: 38 Job: clustalo_1.2.4-1.dsc Machine Architecture: arm64 Package: clustalo Package-Time: 200 Source-Version: 1.2.4-1 Space: 24796 Status: successful Version: 1.2.4-1 -------------------------------------------------------------------------------- Finished at 20161222-0521 Build needed 00:03:20, 24796k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11768048'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11768048/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11768048'] Unmounting chroot for build PACKAGEBUILD-11768048... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11768048'] Removing build PACKAGEBUILD-11768048