clonalorigin 1.0-8 source package in Ubuntu
Changelog
clonalorigin (1.0-8) unstable; urgency=medium
* shorten-test.patch: new: reduce stress on buildds. (Closes: #884475)
* d/tests/: new: add autopkgtest.
* clonalorigin-gui.1: minor fixups.
* d/blocksplit.1: new: document upstream script.
* d/computeMedians.1: new: document upstream script.
* d/makeMauveWargFile.1: new: document upstream script.
* d/clonalorigin-gui.1: minor fixup.
* d/warg.1: minor fixup in description.
* d/clonalorigin.1: remove: unused.
The real manual page in the binary package is a link to warg(1).
* d/clonalorigin.manpages: add missing script manuals.
* d/control: recommend libxml-parser-perl.
This library is needed by computeMedians, although it does not seem
critical to typical clonalorigin workloads.
* d/*lintian-overrides: new: flag a false positive.
-- Étienne Mollier <email address hidden> Fri, 29 Dec 2023 13:11:47 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | misc | |
| Noble | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| clonalorigin_1.0-8.dsc | 2.1 KiB | 99029d9195d02b8cafa2e89fbbc9d8ef6cf65e25777aa98f0b7dc55087855711 |
| clonalorigin_1.0.orig.tar.gz | 181.5 KiB | 73962415160b8b496c81d3e9cbbf68f76c02caf4dd6b41860f01d493b71c6e3a |
| clonalorigin_1.0-8.debian.tar.xz | 10.4 KiB | 192e0da0642eea3f9e86d40b535ac89c900be9cfe557d163ca29a54e7f479882 |
Available diffs
- diff from 1.0-7 to 1.0-8 (3.3 KiB)
No changes file available.
Binary packages built by this source
- clonalorigin: inference of homologous recombination in bacteria using whole genome sequences
Bacteria, unlike us, can reproduce on their own. They do however have
mechanisms that transfer DNA between organisms, a process more formally
known as recombination. The mechanisms by which recombination takes
place have been studied extensively in the laboratory but much remains
to be understood concerning how, when and where recombination takes
place within natural populations of bacteria and how it helps them to
adapt to new environments. ClonalOrigin performs a comparative analysis
of the sequences of a sample of bacterial genomes in order to
reconstruct the recombination events that have taken place in their
ancestry.
- clonalorigin-dbgsym: debug symbols for clonalorigin
