clonalframeml 1.13-1 source package in Ubuntu
Changelog
clonalframeml (1.13-1) unstable; urgency=medium
* New upstream version
[ Komolehin Israel Timilehin ]
* Add autopkgtest
* Add real world example
[ Andreas Tille ]
* Standards-Version: 4.6.2 (routine-update)
* Fix clean target
Closes: #1044020
-- Andreas Tille <email address hidden> Thu, 01 Feb 2024 13:23:35 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | misc | |
| Noble | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| clonalframeml_1.13-1.dsc | 2.0 KiB | 684becb4924045e6babcbe687b34b3e3c1ecb9225c9752647d88b923f9537047 |
| clonalframeml_1.13.orig.tar.gz | 110.6 KiB | 6056109380c695020afa0c26f4ce49dcb9267f1a8f26dfb42629bfa63ac25e6e |
| clonalframeml_1.13-1.debian.tar.xz | 5.2 KiB | 2f982b33620b13e1fb75f0aebf208f8f9b628f54c7635f4250375d7bccd7d88a |
Available diffs
- diff from 1.12-3 to 1.13-1 (16.5 KiB)
No changes file available.
Binary packages built by this source
- clonalframeml: Efficient Inference of Recombination in Whole Bacterial Genomes
ClonalFrameML is a software package that performs efficient inference of
recombination in bacterial genomes. ClonalFrameML was created by Xavier
Didelot and Daniel Wilson. ClonalFrameML can be applied to any type of
aligned sequence data, but is especially aimed at analysis of whole
genome sequences. It is able to compare hundreds of whole genomes in a
matter of hours on a standard Desktop computer. There are three main
outputs from a run of ClonalFrameML: a phylogeny with branch lengths
corrected to account for recombination, an estimation of the key
parameters of the recombination process, and a genomic map of where
recombination took place for each branch of the phylogeny.
.
ClonalFrameML is a maximum likelihood implementation of the Bayesian
software ClonalFrame which was previously described by Didelot and
Falush (2007). The recombination model underpinning ClonalFrameML is
exactly the same as for ClonalFrame, but this new implementation is a
lot faster, is able to deal with much larger genomic dataset, and does
not suffer from MCMC convergence issues
- clonalframeml-dbgsym: debug symbols for clonalframeml
