clonalframe 1.2-11build2 source package in Ubuntu
Changelog
clonalframe (1.2-11build2) oracular; urgency=medium * Rebuild against new libgsl28. -- Gianfranco Costamagna <email address hidden> Tue, 30 Jul 2024 08:23:01 +0200
Upload details
- Uploaded by:
- Gianfranco Costamagna
- Uploaded to:
- Oracular
- Original maintainer:
- Ubuntu Developers
- Architectures:
- any
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Oracular | proposed | universe | science |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
clonalframe_1.2.orig.tar.gz | 44.4 KiB | eded106eb6193acd47eef20ae43d6cdcf64ca26aee89f7d81f49d894847f1b67 |
clonalframe_1.2-11build2.debian.tar.xz | 6.0 KiB | 12ce93861071dac215a3589d21a779034e149933905bf0cd0c41fbbfe8636322 |
clonalframe_1.2-11build2.dsc | 2.1 KiB | 392c1779e15b013bc38366976ee3d1a1a4dee050e6155f91429568d37c193214 |
Available diffs
- diff from 1.2-11build1 to 1.2-11build2 (323 bytes)
Binary packages built by this source
- clonalframe: inference of bacterial microevolution using multilocus sequence data
ClonalFrame identifies the clonal relationships between the members of
a sample, while also estimating the chromosomal position of homologous
recombination events that have disrupted the clonal inheritance.
.
ClonalFrame can be applied to any kind of sequence data, from a single
fragment of DNA to whole genomes. It is well suited for the analysis of
MLST data, where 7 gene fragments have been sequenced, but becomes
progressively more powerful as the sequenced regions increase in length
and number up to whole genomes. However, it requires the sequences to be
aligned. If you have genomic data that is not aligned, it is recommend to
use Mauve which produces alignment of whole bacterial genomes in
exactly the format required for analysis with ClonalFrame.
- clonalframe-dbgsym: debug symbols for clonalframe