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clonalframe package

clonalframe 1.2-11build2 source package in Ubuntu

Changelog

clonalframe (1.2-11build2) oracular; urgency=medium

  * Rebuild against new libgsl28.

 -- Gianfranco Costamagna <email address hidden>  Tue, 30 Jul 2024 08:23:01 +0200

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Uploaded by:
Gianfranco Costamagna
Uploaded to:
Oracular
Original maintainer:
Ubuntu Developers
Architectures:
any
Section:
science
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Oracular proposed universe science

Downloads

File Size SHA-256 Checksum
clonalframe_1.2.orig.tar.gz 44.4 KiB eded106eb6193acd47eef20ae43d6cdcf64ca26aee89f7d81f49d894847f1b67
clonalframe_1.2-11build2.debian.tar.xz 6.0 KiB 12ce93861071dac215a3589d21a779034e149933905bf0cd0c41fbbfe8636322
clonalframe_1.2-11build2.dsc 2.1 KiB 392c1779e15b013bc38366976ee3d1a1a4dee050e6155f91429568d37c193214

Available diffs

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Binary packages built by this source

clonalframe: inference of bacterial microevolution using multilocus sequence data

 ClonalFrame identifies the clonal relationships between the members of
 a sample, while also estimating the chromosomal position of homologous
 recombination events that have disrupted the clonal inheritance.
 .
 ClonalFrame can be applied to any kind of sequence data, from a single
 fragment of DNA to whole genomes. It is well suited for the analysis of
 MLST data, where 7 gene fragments have been sequenced, but becomes
 progressively more powerful as the sequenced regions increase in length
 and number up to whole genomes. However, it requires the sequences to be
 aligned. If you have genomic data that is not aligned, it is recommend to
 use Mauve which produces alignment of whole bacterial genomes in
 exactly the format required for analysis with ClonalFrame.

clonalframe-dbgsym: debug symbols for clonalframe