centrifuge 1.0.3-3build1 source package in Ubuntu
Changelog
centrifuge (1.0.3-3build1) focal; urgency=medium * No-change rebuild for libgcc-s1 package name change. -- Matthias Klose <email address hidden> Mon, 23 Mar 2020 07:11:15 +0100
Upload details
- Uploaded by:
- Matthias Klose
- Uploaded to:
- Focal
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
Series | Published | Component | Section | |
---|---|---|---|---|
Focal | release | universe | misc |
Downloads
File | Size | SHA-256 Checksum |
---|---|---|
centrifuge_1.0.3.orig.tar.gz | 684.8 KiB | 71340f5c0c20dd4f7c4d98ea87f9edcbb1443fff8434e816a5465cbebaca9343 |
centrifuge_1.0.3-3build1.debian.tar.xz | 10.7 KiB | 2fbf8ac1ccc5dcad83f3cb235103e6a02503db6c7dac59c9fa3e7f0a98b89986 |
centrifuge_1.0.3-3build1.dsc | 2.0 KiB | 2344724fc6e2076b601d3cab9de386b5efcd307446acde13f48fef803b5285e2 |
Available diffs
- diff from 1.0.3-3 (in Debian) to 1.0.3-3build1 (326 bytes)
Binary packages built by this source
- centrifuge: rapid and memory-efficient system for classification of DNA sequences
Centrifuge is a very rapid and memory-efficient system for the
classification of DNA sequences from microbial samples, with better
sensitivity than and comparable accuracy to other leading systems. The
system uses a novel indexing scheme based on the Burrows-Wheeler
transform (BWT) and the Ferragina-Manzini (FM) index, optimized
specifically for the metagenomic classification problem. Centrifuge
requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial
genomes) yet provides very fast classification speed, allowing it to
process a typical DNA sequencing run within an hour. Together these
advances enable timely and accurate analysis of large metagenomics data
sets on conventional desktop computers.
- centrifuge-dbgsym: debug symbols for centrifuge