https://launchpad.net/ubuntu/+source/canu/2.2+dfsg-5/+build/26913868 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-s390x-006 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:41:39 UTC 2023 s390x Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 30 Oct 10:14:06 ntpdate[1897]: adjust time server 10.211.37.1 offset 0.000488 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-26913868 --image-type chroot /home/buildd/filecache-default/c23f799bb684944311373fdcead5a58221fa6ef7 Creating target for build PACKAGEBUILD-26913868 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-26913868 Starting target for build PACKAGEBUILD-26913868 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-26913868 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-26913868 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-26913868 Updating target for build PACKAGEBUILD-26913868 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [213 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [74.9 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main s390x Packages [1330 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [517 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe s390x Packages [14.5 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [5990 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main s390x Packages [122 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [53.2 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe s390x Packages [808 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [422 kB] Fetched 24.1 MB in 7s (3307 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash-completion cpp-13 debianutils diffutils g++-13 gcc-13 gcc-13-base grep libapt-pkg6.0 libasan8 libatomic1 libc-bin libc-dev-bin libc6 libc6-dev libcc1-0 libgcc-13-dev libgcc-s1 libgnutls30 libgomp1 libidn2-0 libitm1 liblzma5 libncursesw6 libnsl-dev libnsl2 libpng16-16 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libubsan1 libudev1 libxxhash0 libzstd1 mawk ncurses-base ncurses-bin openssl optipng systemd systemd-dev systemd-sysv xz-utils 51 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 66.2 MB of archives. After this operation, 1883 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libnsl-dev s390x 1.3.0-3 [73.5 kB] Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libc6-dev s390x 2.38-3ubuntu1 [1626 kB] Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libc-dev-bin s390x 2.38-3ubuntu1 [20.0 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libnsl2 s390x 1.3.0-3 [44.4 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libcc1-0 s390x 13.2.0-6ubuntu1 [50.3 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13-base s390x 13.2.0-6ubuntu1 [44.3 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-s1 s390x 13.2.0-6ubuntu1 [35.6 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libgomp1 s390x 13.2.0-6ubuntu1 [146 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libitm1 s390x 13.2.0-6ubuntu1 [31.3 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main s390x libatomic1 s390x 13.2.0-6ubuntu1 [9374 B] Get:11 http://ftpmaster.internal/ubuntu noble/main s390x libasan8 s390x 13.2.0-6ubuntu1 [2852 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main s390x libubsan1 s390x 13.2.0-6ubuntu1 [1112 kB] Get:13 http://ftpmaster.internal/ubuntu noble/main s390x g++-13 s390x 13.2.0-6ubuntu1 [10.2 MB] Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++-13-dev s390x 13.2.0-6ubuntu1 [2457 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main s390x libgcc-13-dev s390x 13.2.0-6ubuntu1 [999 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main s390x gcc-13 s390x 13.2.0-6ubuntu1 [17.6 MB] Get:17 http://ftpmaster.internal/ubuntu noble/main s390x cpp-13 s390x 13.2.0-6ubuntu1 [8796 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main s390x libstdc++6 s390x 13.2.0-6ubuntu1 [874 kB] Get:19 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libzstd1 s390x 1.5.5+dfsg2-2 [336 kB] Get:20 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libc6 s390x 2.38-3ubuntu1 [2839 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main s390x base-files s390x 13ubuntu4 [73.7 kB] Get:22 http://ftpmaster.internal/ubuntu noble/main s390x debianutils s390x 5.14 [89.3 kB] Get:23 http://ftpmaster.internal/ubuntu noble-proposed/main s390x diffutils s390x 1:3.10-1 [187 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main s390x grep s390x 3.11-3 [172 kB] Get:25 http://ftpmaster.internal/ubuntu noble-proposed/main s390x ncurses-bin s390x 6.4+20231016-1 [196 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main s390x base-passwd s390x 3.6.2 [51.1 kB] Get:27 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libc-bin s390x 2.38-3ubuntu1 [659 kB] Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main s390x ncurses-base all 6.4+20231016-1 [24.7 kB] Get:29 http://ftpmaster.internal/ubuntu noble-proposed/main s390x liblzma5 s390x 5.4.4-0.1 [132 kB] Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libssl3 s390x 3.0.10-1ubuntu2.1 [1645 kB] Get:31 http://ftpmaster.internal/ubuntu noble-proposed/main s390x systemd-sysv s390x 253.5-1ubuntu7 [11.5 kB] Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main s390x systemd-dev all 253.5-1ubuntu7 [78.5 kB] Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main s390x systemd s390x 253.5-1ubuntu7 [3064 kB] Get:34 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsystemd-shared s390x 253.5-1ubuntu7 [1901 kB] Get:35 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsystemd0 s390x 253.5-1ubuntu7 [413 kB] Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libudev1 s390x 253.5-1ubuntu7 [162 kB] Get:37 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libxxhash0 s390x 0.8.2-2 [23.6 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libapt-pkg6.0 s390x 2.7.6 [961 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main s390x apt s390x 2.7.6 [1374 kB] Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main s390x apt-utils s390x 2.7.6 [213 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main s390x libunistring5 s390x 1.1-2 [544 kB] Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libidn2-0 s390x 2.3.4-1build1 [65.1 kB] Get:43 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libgnutls30 s390x 3.8.1-4ubuntu3 [942 kB] Get:44 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libncursesw6 s390x 6.4+20231016-1 [158 kB] Get:45 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libtinfo6 s390x 6.4+20231016-1 [116 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main s390x mawk s390x 1.3.4.20230808-1 [131 kB] Get:47 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libsqlite3-0 s390x 3.43.2-1 [720 kB] Get:48 http://ftpmaster.internal/ubuntu noble-proposed/main s390x openssl s390x 3.0.10-1ubuntu2.1 [1189 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main s390x bash-completion all 1:2.11-8 [180 kB] Get:50 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libpng16-16 s390x 1.6.40-2 [197 kB] Get:51 http://ftpmaster.internal/ubuntu noble-proposed/main s390x xz-utils s390x 5.4.4-0.1 [269 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main s390x optipng s390x 0.7.7-3 [87.0 kB] Preconfiguring packages ... Fetched 66.2 MB in 3s (23.9 MB/s) (Reading database ... 13395 files and directories currently installed.) Preparing to unpack .../0-libnsl-dev_1.3.0-3_s390x.deb ... Unpacking libnsl-dev:s390x (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../1-libc6-dev_2.38-3ubuntu1_s390x.deb ... Unpacking libc6-dev:s390x (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../2-libc-dev-bin_2.38-3ubuntu1_s390x.deb ... Unpacking libc-dev-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../3-libnsl2_1.3.0-3_s390x.deb ... Unpacking libnsl2:s390x (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../4-libcc1-0_13.2.0-6ubuntu1_s390x.deb ... Unpacking libcc1-0:s390x (13.2.0-6ubuntu1) over (13.2.0-4ubuntu3) ... Preparing to unpack .../5-gcc-13-base_13.2.0-6ubuntu1_s390x.deb ... Unpacking gcc-13-base:s390x (13.2.0-6ubuntu1) over (13.2.0-4ubuntu3) ... Setting up gcc-13-base:s390x (13.2.0-6ubuntu1) ... 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Setting up libtinfo6:s390x (6.4+20231016-1) ... (Reading database ... 13400 files and directories currently installed.) Preparing to unpack .../0-mawk_1.3.4.20230808-1_s390x.deb ... Unpacking mawk (1.3.4.20230808-1) over (1.3.4.20230730-1) ... Preparing to unpack .../1-libsqlite3-0_3.43.2-1_s390x.deb ... Unpacking libsqlite3-0:s390x (3.43.2-1) over (3.42.0-1) ... Preparing to unpack .../2-openssl_3.0.10-1ubuntu2.1_s390x.deb ... Unpacking openssl (3.0.10-1ubuntu2.1) over (3.0.10-1ubuntu2) ... Preparing to unpack .../3-bash-completion_1%3a2.11-8_all.deb ... Unpacking bash-completion (1:2.11-8) over (1:2.11-7) ... Preparing to unpack .../4-libpng16-16_1.6.40-2_s390x.deb ... Unpacking libpng16-16:s390x (1.6.40-2) over (1.6.40-1) ... Preparing to unpack .../5-xz-utils_5.4.4-0.1_s390x.deb ... Unpacking xz-utils (5.4.4-0.1) over (5.4.1-0.2) ... Preparing to unpack .../6-optipng_0.7.7-3_s390x.deb ... Unpacking optipng (0.7.7-3) over (0.7.7-2build1) ... Setting up apt-utils (2.7.6) ... Setting up cpp-13 (13.2.0-6ubuntu1) ... Setting up libsqlite3-0:s390x (3.43.2-1) ... Setting up systemd-dev (253.5-1ubuntu7) ... Setting up libgomp1:s390x (13.2.0-6ubuntu1) ... Setting up bash-completion (1:2.11-8) ... Setting up xz-utils (5.4.4-0.1) ... Setting up libpng16-16:s390x (1.6.40-2) ... Setting up libatomic1:s390x (13.2.0-6ubuntu1) ... Setting up libsystemd-shared:s390x (253.5-1ubuntu7) ... Setting up libncursesw6:s390x (6.4+20231016-1) ... Setting up libubsan1:s390x (13.2.0-6ubuntu1) ... Setting up libasan8:s390x (13.2.0-6ubuntu1) ... Setting up libnsl2:s390x (1.3.0-3) ... Setting up mawk (1.3.4.20230808-1) ... Setting up libc-dev-bin (2.38-3ubuntu1) ... Setting up openssl (3.0.10-1ubuntu2.1) ... Setting up libcc1-0:s390x (13.2.0-6ubuntu1) ... Setting up libitm1:s390x (13.2.0-6ubuntu1) ... Setting up systemd (253.5-1ubuntu7) ... Initializing machine ID from random generator. Setting up optipng (0.7.7-3) ... Setting up libgcc-13-dev:s390x (13.2.0-6ubuntu1) ... Setting up libnsl-dev:s390x (1.3.0-3) ... Setting up libc6-dev:s390x (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:s390x (13.2.0-6ubuntu1) ... Setting up systemd-sysv (253.5-1ubuntu7) ... Setting up gcc-13 (13.2.0-6ubuntu1) ... Setting up g++-13 (13.2.0-6ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-26913868 s390x noble-proposed -c chroot:build-PACKAGEBUILD-26913868 --arch=s390x --dist=noble-proposed --nolog canu_2.2+dfsg-5.dsc Initiating build PACKAGEBUILD-26913868 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:41:39 UTC 2023 s390x sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-s390x-006.buildd +==============================================================================+ | canu 2.2+dfsg-5 (s390x) Mon, 30 Oct 2023 10:14:38 +0000 | +==============================================================================+ Package: canu Version: 2.2+dfsg-5 Source Version: 2.2+dfsg-5 Distribution: noble-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-26913868/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/canu-2EYGof/resolver-4QKFxr' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- canu_2.2+dfsg-5.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/canu-2EYGof/canu-2.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/canu-2EYGof' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libboost-dev, libmeryl-dev, libsnappy-dev, libfilesys-df-perl, mhap, debhelper, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libboost-dev, libmeryl-dev, libsnappy-dev, libfilesys-df-perl, mhap, debhelper, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [407 B] Get:5 copy:/<>/apt_archive ./ Packages [491 B] Fetched 1855 B in 0s (55.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion debconf-i18n krb5-locales libgpg-error-l10n libgpm2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev binfmt-support ca-certificates-java debhelper debugedit default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz fastjar file fontconfig-config fonts-noto-core fonts-noto-mono gettext gettext-base groff-base intltool-debian jaligner jarwrapper java-common libapache-pom-java libarchive-zip-perl libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libboost-dev libboost1.74-dev libbrotli1 libcommons-compress-java libcommons-parent-java libcups2 libdbus-1-3 libdebhelper-perl libdw1 libelf1 liberror-prone-java libexpat1 libfastutil-java libfile-stripnondeterminism-perl libfilesys-df-perl libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libguava-java libharfbuzz0b libicu72 libjpeg-turbo8 libjpeg8 libjsr305-java liblcms2-2 libmagic-mgc libmagic1 libmeryl-dev libnspr4 libnss3 libpcsclite1 libpipeline1 libsnappy-dev libsnappy1v5 libssw-java libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mhap openjdk-17-jre-headless po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make default-jre gettext-doc libasprintf-dev libgettextpo-dev groff libasound2-plugins alsa-utils libatinject-jsr330-api-java-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev libboost-contract1.74-dev libboost-coroutine1.74-dev libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev libboost-filesystem1.74-dev libboost-graph1.74-dev libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev libboost-program-options1.74-dev libboost-python1.74-dev libboost-random1.74-dev libboost-regex1.74-dev libboost-serialization1.74-dev libboost-stacktrace1.74-dev libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev libasm-java libxz-java cups-common low-memory-monitor libjsr305-java-doc liblcms2-utils pcscd libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic libmail-box-perl Recommended packages: curl | wget | lynx alsa-ucm-conf alsa-topology-conf dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binfmt-support ca-certificates-java debhelper debugedit default-jre-headless dh-autoreconf dh-strip-nondeterminism dwz fastjar file fontconfig-config fonts-noto-core fonts-noto-mono gettext gettext-base groff-base intltool-debian jaligner jarwrapper java-common libapache-pom-java libarchive-zip-perl libasound2 libasound2-data libatinject-jsr330-api-java libavahi-client3 libavahi-common-data libavahi-common3 libboost-dev libboost1.74-dev libbrotli1 libcommons-compress-java libcommons-parent-java libcups2 libdbus-1-3 libdebhelper-perl libdw1 libelf1 liberror-prone-java libexpat1 libfastutil-java libfile-stripnondeterminism-perl libfilesys-df-perl libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libguava-java libharfbuzz0b libicu72 libjpeg-turbo8 libjpeg8 libjsr305-java liblcms2-2 libmagic-mgc libmagic1 libmeryl-dev libnspr4 libnss3 libpcsclite1 libpipeline1 libsnappy-dev libsnappy1v5 libssw-java libsub-override-perl libtool libuchardet0 libxml2 m4 man-db mhap openjdk-17-jre-headless po-debconf sbuild-build-depends-main-dummy 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 118 MB of archives. After this operation, 482 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [704 B] Get:2 http://ftpmaster.internal/ubuntu noble/main s390x libpipeline1 s390x 1.5.7-1 [23.4 kB] Get:3 http://ftpmaster.internal/ubuntu noble/universe s390x binfmt-support s390x 2.2.2-3 [58.3 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main s390x libdbus-1-3 s390x 1.14.10-1ubuntu1 [210 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main s390x libelf1 s390x 0.189-4 [59.7 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main s390x libexpat1 s390x 2.5.0-2 [82.5 kB] Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libglib2.0-0 s390x 2.78.1-1 [1535 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main s390x libicu72 s390x 72.1-3ubuntu3 [10.8 MB] Get:9 http://ftpmaster.internal/ubuntu noble/main s390x libxml2 s390x 2.9.14+dfsg-1.3 [715 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libmagic-mgc s390x 1:5.45-2 [305 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libmagic1 s390x 1:5.45-2 [91.6 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/main s390x file s390x 1:5.45-2 [22.2 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main s390x gettext-base s390x 0.21-13build1 [39.2 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main s390x libuchardet0 s390x 0.0.7-1build2 [76.4 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main s390x groff-base s390x 1.23.0-3 [1047 kB] Get:16 http://ftpmaster.internal/ubuntu noble-proposed/main s390x man-db s390x 2.12.0-1 [1242 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main s390x m4 s390x 1.4.19-4 [255 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main s390x autoconf all 2.71-3 [339 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main s390x autotools-dev all 20220109.1 [44.9 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main s390x automake all 1:1.16.5-1.3 [558 kB] Get:21 http://ftpmaster.internal/ubuntu noble-proposed/main s390x autopoint all 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Get:42 http://ftpmaster.internal/ubuntu noble/main s390x liblcms2-2 s390x 2.14-2 [155 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu1 [128 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] Get:45 http://ftpmaster.internal/ubuntu noble/main s390x libbrotli1 s390x 1.0.9-2build8 [312 kB] Get:46 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libfreetype6 s390x 2.13.2+dfsg-1 [431 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main s390x fonts-noto-mono all 20201225-2 [435 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main s390x fonts-noto-core all 20201225-2 [13.3 MB] Get:49 http://ftpmaster.internal/ubuntu noble/main s390x fontconfig-config s390x 2.14.2-4ubuntu1 [35.8 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main s390x libfontconfig1 s390x 2.14.2-4ubuntu1 [147 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main s390x libnspr4 s390x 2:4.35-1.1 [117 kB] Get:52 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Get:62 http://ftpmaster.internal/ubuntu noble/universe s390x jarwrapper all 0.79 [10.3 kB] Get:63 http://ftpmaster.internal/ubuntu noble/universe s390x libapache-pom-java all 29-2 [5284 B] Get:64 http://ftpmaster.internal/ubuntu noble/universe s390x libatinject-jsr330-api-java all 1.0+ds1-5 [5348 B] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main s390x libboost1.74-dev s390x 1.74.0+ds1-23ubuntu1 [9584 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main s390x libboost-dev s390x 1.74.0.3ubuntu7 [3490 B] Get:67 http://ftpmaster.internal/ubuntu noble/universe s390x libcommons-parent-java all 56-1 [10.7 kB] Get:68 http://ftpmaster.internal/ubuntu noble/universe s390x libcommons-compress-java all 1.24.0-1 [603 kB] Get:69 http://ftpmaster.internal/ubuntu noble/universe s390x libjsr305-java all 0.1~+svn49-11 [27.0 kB] Get:70 http://ftpmaster.internal/ubuntu noble/universe s390x libguava-java all 32.0.1-1 [2692 kB] Get:71 http://ftpmaster.internal/ubuntu noble/universe s390x liberror-prone-java all 2.18.0-1 [22.5 kB] Get:72 http://ftpmaster.internal/ubuntu noble/universe s390x libfastutil-java all 8.5.12+dfsg-1 [19.8 MB] Get:73 http://ftpmaster.internal/ubuntu noble/main s390x libfilesys-df-perl s390x 0.92-7build1 [11.0 kB] Get:74 http://ftpmaster.internal/ubuntu noble/universe s390x libmeryl-dev s390x 0~20150903+r2013-8build3 [54.9 kB] Get:75 http://ftpmaster.internal/ubuntu noble/universe s390x libssw-java s390x 1.1-14 [21.9 kB] Get:76 http://ftpmaster.internal/ubuntu noble/universe s390x mhap all 2.1.3+dfsg-3 [160 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main s390x libsnappy1v5 s390x 1.1.10-1 [30.0 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main s390x libsnappy-dev s390x 1.1.10-1 [44.1 kB] Preconfiguring packages ... Fetched 118 MB in 20s (5882 kB/s) Selecting previously unselected package libpipeline1:s390x. (Reading database ... 13392 files and directories currently installed.) Preparing to unpack .../00-libpipeline1_1.5.7-1_s390x.deb ... Unpacking libpipeline1:s390x (1.5.7-1) ... Selecting previously unselected package binfmt-support. Preparing to unpack .../01-binfmt-support_2.2.2-3_s390x.deb ... Unpacking binfmt-support (2.2.2-3) ... Selecting previously unselected package libdbus-1-3:s390x. Preparing to unpack .../02-libdbus-1-3_1.14.10-1ubuntu1_s390x.deb ... Unpacking libdbus-1-3:s390x (1.14.10-1ubuntu1) ... Selecting previously unselected package libelf1:s390x. Preparing to unpack .../03-libelf1_0.189-4_s390x.deb ... Unpacking libelf1:s390x (0.189-4) ... Selecting previously unselected package libexpat1:s390x. Preparing to unpack .../04-libexpat1_2.5.0-2_s390x.deb ... Unpacking libexpat1:s390x (2.5.0-2) ... Selecting previously unselected package libglib2.0-0:s390x. 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Selecting previously unselected package libavahi-common-data:s390x. Preparing to unpack .../36-libavahi-common-data_0.8-10ubuntu1_s390x.deb ... Unpacking libavahi-common-data:s390x (0.8-10ubuntu1) ... Selecting previously unselected package libavahi-common3:s390x. Preparing to unpack .../37-libavahi-common3_0.8-10ubuntu1_s390x.deb ... Unpacking libavahi-common3:s390x (0.8-10ubuntu1) ... Selecting previously unselected package libavahi-client3:s390x. Preparing to unpack .../38-libavahi-client3_0.8-10ubuntu1_s390x.deb ... Unpacking libavahi-client3:s390x (0.8-10ubuntu1) ... Selecting previously unselected package libcups2:s390x. Preparing to unpack .../39-libcups2_2.4.6-0ubuntu3_s390x.deb ... Unpacking libcups2:s390x (2.4.6-0ubuntu3) ... Selecting previously unselected package liblcms2-2:s390x. Preparing to unpack .../40-liblcms2-2_2.14-2_s390x.deb ... Unpacking liblcms2-2:s390x (2.14-2) ... Selecting previously unselected package libjpeg-turbo8:s390x. Preparing to unpack .../41-libjpeg-turbo8_2.1.5-2ubuntu1_s390x.deb ... Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... Selecting previously unselected package libjpeg8:s390x. Preparing to unpack .../42-libjpeg8_8c-2ubuntu11_s390x.deb ... Unpacking libjpeg8:s390x (8c-2ubuntu11) ... Selecting previously unselected package libbrotli1:s390x. Preparing to unpack .../43-libbrotli1_1.0.9-2build8_s390x.deb ... Unpacking libbrotli1:s390x (1.0.9-2build8) ... Selecting previously unselected package libfreetype6:s390x. Preparing to unpack .../44-libfreetype6_2.13.2+dfsg-1_s390x.deb ... Unpacking libfreetype6:s390x (2.13.2+dfsg-1) ... Selecting previously unselected package fonts-noto-mono. Preparing to unpack .../45-fonts-noto-mono_20201225-2_all.deb ... Unpacking fonts-noto-mono (20201225-2) ... Selecting previously unselected package fonts-noto-core. Preparing to unpack .../46-fonts-noto-core_20201225-2_all.deb ... Unpacking fonts-noto-core (20201225-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../47-fontconfig-config_2.14.2-4ubuntu1_s390x.deb ... Unpacking fontconfig-config (2.14.2-4ubuntu1) ... Selecting previously unselected package libfontconfig1:s390x. Preparing to unpack .../48-libfontconfig1_2.14.2-4ubuntu1_s390x.deb ... Unpacking libfontconfig1:s390x (2.14.2-4ubuntu1) ... Selecting previously unselected package libnspr4:s390x. Preparing to unpack .../49-libnspr4_2%3a4.35-1.1_s390x.deb ... Unpacking libnspr4:s390x (2:4.35-1.1) ... Selecting previously unselected package libnss3:s390x. Preparing to unpack .../50-libnss3_2%3a3.94-1_s390x.deb ... Unpacking libnss3:s390x (2:3.94-1) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../51-libasound2-data_1.2.10-1_all.deb ... Unpacking libasound2-data (1.2.10-1) ... Selecting previously unselected package libasound2:s390x. Preparing to unpack .../52-libasound2_1.2.10-1_s390x.deb ... Unpacking libasound2:s390x (1.2.10-1) ... Selecting previously unselected package libgraphite2-3:s390x. Preparing to unpack .../53-libgraphite2-3_1.3.14-1build2_s390x.deb ... Unpacking libgraphite2-3:s390x (1.3.14-1build2) ... Selecting previously unselected package libharfbuzz0b:s390x. Preparing to unpack .../54-libharfbuzz0b_8.0.1-1_s390x.deb ... Unpacking libharfbuzz0b:s390x (8.0.1-1) ... Selecting previously unselected package libpcsclite1:s390x. Preparing to unpack .../55-libpcsclite1_2.0.0-1_s390x.deb ... Unpacking libpcsclite1:s390x (2.0.0-1) ... Selecting previously unselected package openjdk-17-jre-headless:s390x. Preparing to unpack .../56-openjdk-17-jre-headless_17.0.9+9-1_s390x.deb ... Unpacking openjdk-17-jre-headless:s390x (17.0.9+9-1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../57-default-jre-headless_2%3a1.17-75_s390x.deb ... Unpacking default-jre-headless (2:1.17-75) ... Selecting previously unselected package jaligner. Preparing to unpack .../58-jaligner_1.0+dfsg-11_all.deb ... Unpacking jaligner (1.0+dfsg-11) ... Selecting previously unselected package fastjar. Preparing to unpack .../59-fastjar_2%3a0.98-7_s390x.deb ... Unpacking fastjar (2:0.98-7) ... Selecting previously unselected package jarwrapper. Preparing to unpack .../60-jarwrapper_0.79_all.deb ... Unpacking jarwrapper (0.79) ... Selecting previously unselected package libapache-pom-java. Preparing to unpack .../61-libapache-pom-java_29-2_all.deb ... Unpacking libapache-pom-java (29-2) ... Selecting previously unselected package libatinject-jsr330-api-java. Preparing to unpack .../62-libatinject-jsr330-api-java_1.0+ds1-5_all.deb ... Unpacking libatinject-jsr330-api-java (1.0+ds1-5) ... Selecting previously unselected package libboost1.74-dev:s390x. Preparing to unpack .../63-libboost1.74-dev_1.74.0+ds1-23ubuntu1_s390x.deb ... Unpacking libboost1.74-dev:s390x (1.74.0+ds1-23ubuntu1) ... 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Unpacking liberror-prone-java (2.18.0-1) ... Selecting previously unselected package libfastutil-java. Preparing to unpack .../70-libfastutil-java_8.5.12+dfsg-1_all.deb ... Unpacking libfastutil-java (8.5.12+dfsg-1) ... Selecting previously unselected package libfilesys-df-perl. Preparing to unpack .../71-libfilesys-df-perl_0.92-7build1_s390x.deb ... Unpacking libfilesys-df-perl (0.92-7build1) ... Selecting previously unselected package libmeryl-dev. Preparing to unpack .../72-libmeryl-dev_0~20150903+r2013-8build3_s390x.deb ... Unpacking libmeryl-dev (0~20150903+r2013-8build3) ... Selecting previously unselected package libssw-java. Preparing to unpack .../73-libssw-java_1.1-14_s390x.deb ... Unpacking libssw-java (1.1-14) ... Selecting previously unselected package mhap. Preparing to unpack .../74-mhap_2.1.3+dfsg-3_all.deb ... Unpacking mhap (2.1.3+dfsg-3) ... Selecting previously unselected package libsnappy1v5:s390x. Preparing to unpack .../75-libsnappy1v5_1.1.10-1_s390x.deb ... Unpacking libsnappy1v5:s390x (1.1.10-1) ... Selecting previously unselected package libsnappy-dev:s390x. Preparing to unpack .../76-libsnappy-dev_1.1.10-1_s390x.deb ... Unpacking libsnappy-dev:s390x (1.1.10-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../77-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libexpat1:s390x (2.5.0-2) ... Setting up libpipeline1:s390x (1.5.7-1) ... Setting up fastjar (2:0.98-7) ... Setting up libgraphite2-3:s390x (1.3.14-1build2) ... Setting up liblcms2-2:s390x (2.14-2) ... Setting up libfastutil-java (8.5.12+dfsg-1) ... Setting up libboost1.74-dev:s390x (1.74.0+ds1-23ubuntu1) ... Setting up libicu72:s390x (72.1-3ubuntu3) ... Setting up libjsr305-java (0.1~+svn49-11) ... Setting up fonts-noto-mono (20201225-2) ... Setting up java-common (0.75) ... Setting up libmagic-mgc (1:5.45-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:s390x (2.78.1-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.11.7ubuntu1) ... Setting up libbrotli1:s390x (1.0.9-2build8) ... Setting up libfilesys-df-perl (0.92-7build1) ... Setting up libmagic1:s390x (1:5.45-2) ... Setting up gettext-base (0.21-13build1) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-2) ... Setting up libssw-java (1.1-14) ... Setting up libsnappy1v5:s390x (1.1.10-1) ... Setting up libasound2-data (1.2.10-1) ... Setting up autotools-dev (20220109.1) ... Setting up libfreetype6:s390x (2.13.2+dfsg-1) ... Setting up libnspr4:s390x (2:4.35-1.1) ... Setting up libapache-pom-java (29-2) ... Setting up libavahi-common-data:s390x (0.8-10ubuntu1) ... Setting up libatinject-jsr330-api-java (1.0+ds1-5) ... Setting up libdbus-1-3:s390x (1.14.10-1ubuntu1) ... Setting up libmeryl-dev (0~20150903+r2013-8build3) ... Setting up autopoint (0.21-13build1) ... Setting up binfmt-support (2.2.2-3) ... Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Created symlink /etc/systemd/system/multi-user.target.wants/binfmt-support.service → /lib/systemd/system/binfmt-support.service. Setting up libpcsclite1:s390x (2.0.0-1) ... Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up libuchardet0:s390x (0.0.7-1build2) ... Setting up libasound2:s390x (1.2.10-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libharfbuzz0b:s390x (8.0.1-1) ... Setting up libboost-dev:s390x (1.74.0.3ubuntu7) ... Setting up ca-certificates-java (20230710) ... No JRE found. Skipping Java certificates setup. Setting up libelf1:s390x (0.189-4) ... Setting up libxml2:s390x (2.9.14+dfsg-1.3) ... Setting up fonts-noto-core (20201225-2) ... Setting up libjpeg8:s390x (8c-2ubuntu11) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:s390x (0.189-4) ... Setting up gettext (0.21-13build1) ... Setting up jarwrapper (0.79) ... Setting up libtool (2.4.7-7) ... Setting up fontconfig-config (2.14.2-4ubuntu1) ... Setting up libsnappy-dev:s390x (1.1.10-1) ... Setting up libcommons-parent-java (56-1) ... Setting up libavahi-common3:s390x (0.8-10ubuntu1) ... Setting up libnss3:s390x (2:3.94-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up debugedit (1:5.0-5) ... Setting up libfontconfig1:s390x (2.14.2-4ubuntu1) ... Setting up libavahi-client3:s390x (0.8-10ubuntu1) ... Setting up libcommons-compress-java (1.24.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libcups2:s390x (2.4.6-0ubuntu3) ... Setting up debhelper (13.11.7ubuntu1) ... Setting up openjdk-17-jre-headless:s390x (17.0.9+9-1) ... update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/jpackage to provide /usr/bin/jpackage (jpackage) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-17-openjdk-s390x/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up libguava-java (32.0.1-1) ... Setting up liberror-prone-java (2.18.0-1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for ca-certificates-java (20230710) ... Adding debian:ACCVRAIZ1.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:AC_RAIZ_FNMT-RCM_SERVIDORES_SEGUROS.pem Adding debian:ANF_Secure_Server_Root_CA.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068_2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certainly_Root_E1.pem Adding debian:Certainly_Root_R1.pem Adding debian:Certigna.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certum_EC-384_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Root_CA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:D-TRUST_BR_Root_CA_1_2020.pem Adding debian:D-TRUST_EV_Root_CA_1_2020.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_TLS_ECC_P384_Root_G5.pem Adding debian:DigiCert_TLS_RSA4096_Root_G5.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:E-Tugra_Global_Root_CA_ECC_v3.pem Adding debian:E-Tugra_Global_Root_CA_RSA_v3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:GLOBALTRUST_2020.pem Adding debian:GTS_Root_R1.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_E46.pem Adding debian:GlobalSign_Root_R46.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:HARICA_TLS_ECC_Root_CA_2021.pem Adding debian:HARICA_TLS_RSA_Root_CA_2021.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:HiPKI_Root_CA_-_G1.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:ISRG_Root_X1.pem Adding debian:ISRG_Root_X2.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SecureTrust_CA.pem Adding debian:Secure_Global_CA.pem Adding debian:Security_Communication_ECC_RootCA1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Security_Communication_RootCA3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Telia_Root_CA_v2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:TunTrust_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:vTrus_ECC_Root_CA.pem Adding debian:vTrus_Root_CA.pem done. Setting up default-jre-headless (2:1.17-75) ... Setting up jaligner (1.0+dfsg-11) ... Setting up mhap (2.1.3+dfsg-3) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in amd64 arm64 mips64el ppc64el riscv64 s390x ia64 loong64 ppc64 sparc64 x32) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-164-generic #181-Ubuntu SMP Fri Sep 1 13:41:39 UTC 2023 s390x (s390x) Toolchain package versions: binutils_2.41-5ubuntu1 dpkg-dev_1.22.0ubuntu1 g++-13_13.2.0-6ubuntu1 gcc-13_13.2.0-6ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-6ubuntu1 libstdc++6_13.2.0-6ubuntu1 linux-libc-dev_6.5.0-9.9 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.6 apt-utils_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13build1 autotools-dev_20220109.1 base-files_13ubuntu4 base-passwd_3.6.2 bash_5.2.15-2ubuntu1 bash-completion_1:2.11-8 binfmt-support_2.2.2-3 binutils_2.41-5ubuntu1 binutils-common_2.41-5ubuntu1 binutils-s390x-linux-gnu_2.41-5ubuntu1 bsdextrautils_2.39.1-4ubuntu2 bsdutils_1:2.39.1-4ubuntu2 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 ca-certificates-java_20230710 coreutils_9.1-1ubuntu2 cpp_4:13.2.0-1ubuntu1 cpp-13_13.2.0-6ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.7ubuntu1 debianutils_5.14 debugedit_1:5.0-5 default-jre-headless_2:1.17-75 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.0ubuntu1 dpkg-dev_1.22.0ubuntu1 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.1-1 fastjar_2:0.98-7 file_1:5.45-2 findutils_4.9.0-5 fontconfig-config_2.14.2-4ubuntu1 fonts-noto-core_20201225-2 fonts-noto-mono_20201225-2 g++_4:13.2.0-1ubuntu1 g++-13_13.2.0-6ubuntu1 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libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmeryl-dev_0~20150903+r2013-8build3 libmount1_2.39.1-4ubuntu2 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20231016-1 libnettle8_3.9.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnspr4_2:4.35-1.1 libnss-nis_3.1-0ubuntu6 libnss-nisplus_1.3-0ubuntu6 libnss3_2:3.94-1 libp11-kit0_0.25.0-4ubuntu1 libpam-modules_1.5.2-6ubuntu1 libpam-modules-bin_1.5.2-6ubuntu1 libpam-runtime_1.5.2-6ubuntu1 libpam0g_1.5.2-6ubuntu1 libpcre2-8-0_10.42-4 libpcsclite1_2.0.0-1 libperl5.36_5.36.0-9ubuntu1 libpipeline1_1.5.7-1 libpng16-16_1.6.40-2 libproc2-0_2:4.0.3-1ubuntu1 libreadline8_8.2-1.3 libseccomp2_2.5.4-1ubuntu3 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-1 libsframe1_2.41-5ubuntu1 libsmartcols1_2.39.1-4ubuntu2 libsnappy-dev_1.1.10-1 libsnappy1v5_1.1.10-1 libsqlite3-0_3.43.2-1 libss2_1.47.0-2ubuntu1 libssl3_3.0.10-1ubuntu2.1 libssw-java_1.1-14 libstdc++-13-dev_13.2.0-6ubuntu1 libstdc++6_13.2.0-6ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_253.5-1ubuntu7 libsystemd0_253.5-1ubuntu7 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.4+20231016-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libubsan1_13.2.0-6ubuntu1 libuchardet0_0.0.7-1build2 libudev1_253.5-1ubuntu7 libunistring2_1.0-2 libunistring5_1.1-2 libuuid1_2.39.1-4ubuntu2 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.0-9.9 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.47.0-2ubuntu1 lto-disabled-list_43 m4_1.4.19-4 make_4.3-4.1build1 man-db_2.12.0-1 mawk_1.3.4.20230808-1 mhap_2.1.3+dfsg-3 mount_2.39.1-4ubuntu2 ncurses-base_6.4+20231016-1 ncurses-bin_6.4+20231016-1 openjdk-17-jre-headless_17.0.9+9-1 openssl_3.0.10-1ubuntu2.1 optipng_0.7.7-3 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-9ubuntu1 perl-base_5.36.0-9ubuntu1 perl-modules-5.36_5.36.0-9ubuntu1 pinentry-curses_1.2.1-1ubuntu1 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.3-1ubuntu1 psmisc_23.6-1 readline-common_8.2-1.3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 systemd_253.5-1ubuntu7 systemd-dev_253.5-1ubuntu7 systemd-sysv_253.5-1ubuntu7 sysvinit-utils_3.07-1ubuntu1 tar_1.34+dfsg-1.2ubuntu1 tzdata_2023c-9ubuntu1 ubuntu-keyring_2021.03.26 usrmerge_35ubuntu1 util-linux_2.39.1-4ubuntu2 uuid-runtime_2.39.1-4ubuntu2 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-1ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: canu Binary: canu Architecture: amd64 arm64 mips64el ppc64el riscv64 s390x ia64 loong64 ppc64 sparc64 x32 Version: 2.2+dfsg-5 Maintainer: Debian Med Packaging Team Homepage: https://canu.readthedocs.org/en/latest/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/canu Vcs-Git: https://salsa.debian.org/med-team/canu.git Testsuite: autopkgtest Testsuite-Triggers: curl, procps Build-Depends: debhelper-compat (= 13), libboost-dev, libmeryl-dev, libsnappy-dev, libfilesys-df-perl, mhap, debhelper Package-List: canu deb science optional arch=amd64,arm64,mips64el,ppc64el,riscv64,s390x,ia64,loong64,ppc64,sparc64,x32 Checksums-Sha1: 042648a09dabff2308a597f971fa1e5266c3a363 1230624 canu_2.2+dfsg.orig.tar.xz 42f967ed80bca3c884b2741e01a8239b632989d0 12360 canu_2.2+dfsg-5.debian.tar.xz Checksums-Sha256: a0e68ddd7234070e9f134374a3442590199f1f3734b1855a46a4147c97680fde 1230624 canu_2.2+dfsg.orig.tar.xz b46328555c6d70b6a8baca86a3f4521893563a55815158b3f4a3e1e0c0e2089a 12360 canu_2.2+dfsg-5.debian.tar.xz Files: f9329149a74d54458678b7a1c7c42982 1230624 canu_2.2+dfsg.orig.tar.xz e90979f8e9f152ccffe2316daab69dd8 12360 canu_2.2+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmUylAsACgkQPCZ2P2xn 5uLcGRAAmqyUQEDvN3hcZNw5uepwLYYkuFF28pQjkMNqBmcF1Kn3xwKKalWnqaGd EfbgPiyKFGVZYJcLiOeSamGA0+iepP/giaqWDJZ8RYVRJZ3GumLuT0lOT1rHLTkd qFPblGYI+CiXeZWGbajqwJQK6hyUgMjXiHhyYunL29jyfz72xikSieYk6psFj2FM sJfa3RM4dVJxs7BFaL7x+OyPJBUqTgraPN4bGkqQKDZPnhYvjbZ+F4cO1/aCzlJz e0ZF8XKs5Nk3VRJg39Bm2m4cQuaWE32LRQ1cUeih/oLCvVN/3FWIqxMgMB9JME2s pftxugnSo1gbu29kW21NqDGZD65jI5EVd3ok3STL2t0aPnRZD47R9I+Ixg8mVlBO 0GGFuEOdO1iPhhqFb2BMBuAIOwdrkRQUxamQ9IxkuDGCdCu1Gad42/zsBhZFFGLh LuOBXhovChm+Jy2ljOO0nW5ASVPFMjOQ4V/FgCMQZE7O5ewGOsHtHS6P48o3Gm0X 3RT5c2PtsMdL3//rBvuLpzro88mMZ1fAkthBLCkxnIlbi7qO4nqy9yOD5noUNscm IEqbtZjpMCGIxBJrO2/kwEejoabl/XxERr56Pv8BAF24202CTTkemPPZwSnaNOF5 ETVoIwIwIA4bHgYs/lwAPS8hL8ObUtCz3MHngI8p7D9jB2Be9Mk= =n+nH -----END PGP SIGNATURE----- gpgv: Signature made Fri Oct 20 14:51:55 2023 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./canu_2.2+dfsg-5.dsc: no acceptable signature found dpkg-source: info: extracting canu in /<> dpkg-source: info: unpacking canu_2.2+dfsg.orig.tar.xz dpkg-source: info: unpacking canu_2.2+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use-debian-mhap-at-runtime.patch dpkg-source: info: applying external-mhap.patch dpkg-source: info: applying libsnappy dpkg-source: info: applying stacktrace dpkg-source: info: applying spelling dpkg-source: info: applying cpuid Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-26913868 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-26913868 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-26913868 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package canu dpkg-buildpackage: info: source version 2.2+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean --sourcedirectory=src/ debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' rm -rf Linux-* rm -f src/canu_version.H make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--sourcedirectory=src/ dh_clean -O--sourcedirectory=src/ debian/rules binary-arch dh binary-arch --sourcedirectory=src/ dh_update_autotools_config -a -O--sourcedirectory=src/ dh_autoreconf -a -O--sourcedirectory=src/ dh_auto_configure -a -O--sourcedirectory=src/ debian/rules override_dh_auto_build make[1]: Entering directory '/<>' rm -Rf src/utility/src/utility/libbacktrace src/stores/libsnappy dh_auto_build cd src && make -j4 "INSTALL=install --strip-program=true" make[2]: Entering directory '/<>/src' /bin/sh: 1: git: not found Building release v2.2 For 'Linux' '5.4.0-164-generic' as 's390x' into '/<>/build/{bin,obj}'. Using '/usr/bin/g++' version '13'. Using user-supplied CXXFLAGS '-Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5'. g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/runtime.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/runtime.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/align-parasail-driver.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/align-parasail-driver.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/edlib.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/edlib.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/files.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/files.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/files-buffered.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/files-buffered.C utility/src/utility/files.C: In function ‘void AS_UTL_symlink(const char*, const char*)’: utility/src/utility/files.C:299:10: warning: ignoring return value of ‘int symlink(const char*, const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 299 | symlink(pathToFile, pathToLink); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ utility/src/utility/files.C: In function ‘void AS_UTL_loadFileList(const char*, std::vector&)’: utility/src/utility/files.C:722:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 722 | fgets(line, FILENAME_MAX, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ utility/src/utility/files.C:728:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 728 | fgets(line, FILENAME_MAX, F); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/files-compressed.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/files-compressed.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/files-fasta-fastq.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/files-fasta-fastq.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/files-memoryMapped.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/files-memoryMapped.C utility/src/utility/files-memoryMapped.C: In constructor ‘memoryMappedFile::memoryMappedFile(const char*, memoryMappedFileType)’: utility/src/utility/files-memoryMapped.C:70:9: warning: ignoring return value of ‘ssize_t read(int, void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 70 | read(_fd, _data, _length); | ~~~~^~~~~~~~~~~~~~~~~~~~~ utility/src/utility/files-memoryMapped.C: In destructor ‘memoryMappedFile::~memoryMappedFile()’: utility/src/utility/files-memoryMapped.C:96:10: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 96 | write(_fd, _data, _length), close(_fd); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/logging.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/logging.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/strings.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/strings.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/system.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/system.C utility/src/utility/logging.C: In member function ‘logFileInstance::rotate()’: utility/src/utility/logging.C:157:46: warning: ‘.’ directive output may be truncated writing 1 byte into a region of size between 0 and 4096 [-Wformat-truncation=] 157 | snprintf(_filePrefix, FILENAME_MAX, "%s.%03u.%s", _prefix, _order, _name); | ^ In file included from /usr/include/stdio.h:964, from utility/src/utility/types.H:48, from utility/src/utility/logging.H:23, from utility/src/utility/logging.C:20: In function ‘snprintf’, inlined from ‘logFileInstance::rotate()’ at utility/src/utility/logging.C:157:15: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 8205 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utility/src/utility/logging.C: In member function ‘logFileInstance::rotate()’: utility/src/utility/logging.C:158:46: warning: ‘.’ directive output may be truncated writing 1 byte into a region of size between 0 and 4096 [-Wformat-truncation=] 158 | snprintf(_fileName, FILENAME_MAX, "%s.%03u.%s", _prefix, _order, _name); | ^ In function ‘snprintf’, inlined from ‘logFileInstance::rotate()’ at utility/src/utility/logging.C:158:15: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 8205 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utility/src/utility/logging.C: In member function ‘logFileInstance::rotate()’: utility/src/utility/logging.C:154:46: warning: ‘.’ directive output may be truncated writing 1 byte into a region of size between 0 and 4096 [-Wformat-truncation=] 154 | snprintf(_filePrefix, FILENAME_MAX, "%s.%03u.%s", _prefix, _order, _name); | ^ In function ‘snprintf’, inlined from ‘logFileInstance::rotate()’ at utility/src/utility/logging.C:154:15: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 8205 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ utility/src/utility/logging.C: In member function ‘logFileInstance::rotate()’: utility/src/utility/logging.C:155:46: warning: ‘.’ directive output may be truncated writing 1 byte into a region of size between 0 and 4096 [-Wformat-truncation=] 155 | snprintf(_fileName, FILENAME_MAX, "%s.%03u.%s.thr%03d", _prefix, _order, _name, _threadID); | ^ utility/src/utility/logging.C:155:43: note: using the range [-2147483648, 2147483647] for directive argument 155 | snprintf(_fileName, FILENAME_MAX, "%s.%03u.%s.thr%03d", _prefix, _order, _name, _threadID); | ^~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘logFileInstance::rotate()’ at utility/src/utility/logging.C:155:15: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 13 and 8220 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘logFileInstance::rotateMessage()’ at utility/src/utility/logging.C:170:15: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: warning: ‘__snprintf_chk’ specified bound 1024 exceeds destination size 256 [-Wstringop-overflow=] 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/system-stackTrace.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/system-stackTrace.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/sequence.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/sequence.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/types.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/types.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-exact.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/kmers-exact.C utility/src/utility/system-stackTrace.C: In function ‘void AS_UTL_catchCrash(int, siginfo_t*, void*)’: utility/src/utility/system-stackTrace.C:40:30: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 40 | #define WRITE_STRING(S) write(2, S, strlen(S)) | ~~~~~^~~~~~~~~~~~~~~~~ utility/src/utility/system-stackTrace.C:79:3: note: in expansion of macro ‘WRITE_STRING’ 79 | WRITE_STRING("\nFailed with '"); | ^~~~~~~~~~~~ utility/src/utility/system-stackTrace.C:40:30: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 40 | #define WRITE_STRING(S) write(2, S, strlen(S)) | ~~~~~^~~~~~~~~~~~~~~~~ utility/src/utility/system-stackTrace.C:80:3: note: in expansion of macro ‘WRITE_STRING’ 80 | WRITE_STRING(strsignal(sig_num)); | ^~~~~~~~~~~~ utility/src/utility/system-stackTrace.C:40:30: warning: ignoring return value of ‘ssize_t write(int, const void*, size_t)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 40 | #define WRITE_STRING(S) write(2, S, strlen(S)) | ~~~~~^~~~~~~~~~~~~~~~~ utility/src/utility/system-stackTrace.C:81:3: note: in expansion of macro ‘WRITE_STRING’ 81 | WRITE_STRING("'; backtrace (libbacktrace):\n"); | ^~~~~~~~~~~~ g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-files.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/kmers-files.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-histogram.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/kmers-histogram.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-reader.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/kmers-reader.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-writer-block.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/kmers-writer-block.C utility/src/utility/kmers-reader.C: In member function ‘merylFileReader::initializeFromMasterIndex(bool, bool, bool)’: utility/src/utility/kmers-reader.C:133:32: warning: ‘/merylIndex’ directive output may be truncated writing 11 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 133 | snprintf(N, FILENAME_MAX, "%s/merylIndex", _inName); | ^~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from utility/src/utility/types.H:48, from utility/src/utility/kmers.H:23, from utility/src/utility/kmers-reader.C:20: In function ‘snprintf’, inlined from ‘merylFileReader::initializeFromMasterIndex(bool, bool, bool)’ at utility/src/utility/kmers-reader.C:133:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4108 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-writer-stream.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/kmers-writer-stream.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-writer.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/kmers-writer.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/kmers.C utility/src/utility/kmers-writer.C:55:2: warning: #warning how to set prefix size for streaming operations? [-Wcpp] 55 | #warning how to set prefix size for streaming operations? | ^~~~~~~ g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/bits.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/bits.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/bits-wordArray.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/bits-wordArray.C utility/src/utility/kmers-writer.C: In member function ‘merylFileWriter::~merylFileWriter()’: utility/src/utility/kmers-writer.C:144:32: warning: ‘/merylIndex’ directive output may be truncated writing 11 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 144 | snprintf(N, FILENAME_MAX, "%s/merylIndex", _outName); | ^~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from utility/src/utility/types.H:48, from utility/src/utility/kmers.H:23, from utility/src/utility/kmers-writer.C:20: In function ‘snprintf’, inlined from ‘merylFileWriter::~merylFileWriter()’ at utility/src/utility/kmers-writer.C:144:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4108 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/hexDump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/hexDump.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/md5.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/md5.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/mt19937ar.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/mt19937ar.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/speedCounter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/speedCounter.C g++ -o /<>/build/obj/lib/libcanu.a/utility/src/utility/sweatShop.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/utility/sweatShop.C cc -o /<>/build/obj/lib/libcanu.a/utility/src/parasail/cpuid.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/parasail/cpuid.c cc -o /<>/build/obj/lib/libcanu.a/utility/src/parasail/memory.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/parasail/memory.c cc -o /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/parasail/sg.c cc -o /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg_trace.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/parasail/sg_trace.c cc -o /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg_qx_dispatch.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/parasail/sg_qx_dispatch.c cc -o /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg_qb_de_dispatch.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/parasail/sg_qb_de_dispatch.c cc -o /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg_qe_db_dispatch.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/parasail/sg_qe_db_dispatch.c cc -o /<>/build/obj/lib/libcanu.a/utility/src/parasail/cigar.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utility/src/parasail/cigar.c g++ -o /<>/build/obj/lib/libcanu.a/correction/computeGlobalScore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap correction/computeGlobalScore.C g++ -o /<>/build/obj/lib/libcanu.a/correction/falconConsensus.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap correction/falconConsensus.C g++ -o /<>/build/obj/lib/libcanu.a/correction/falconConsensus-alignTag.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap correction/falconConsensus-alignTag.C g++ -o /<>/build/obj/lib/libcanu.a/stores/sqCache.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/sqCache.C g++ -o /<>/build/obj/lib/libcanu.a/stores/sqLibrary.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/sqLibrary.C g++ -o /<>/build/obj/lib/libcanu.a/stores/sqReadData.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/sqReadData.C g++ -o /<>/build/obj/lib/libcanu.a/stores/sqReadDataWriter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/sqReadDataWriter.C g++ -o /<>/build/obj/lib/libcanu.a/stores/sqStore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/sqStore.C g++ -o /<>/build/obj/lib/libcanu.a/stores/sqStoreBlob.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/sqStoreBlob.C g++ -o /<>/build/obj/lib/libcanu.a/stores/sqStoreConstructor.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/sqStoreConstructor.C g++ -o /<>/build/obj/lib/libcanu.a/stores/sqStoreInfo.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/sqStoreInfo.C g++ -o /<>/build/obj/lib/libcanu.a/stores/ovOverlap.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/ovOverlap.C In file included from stores/sqStoreBlob.C:18: In function ‘makeBlobName(char const*, unsigned int, char*)’, inlined from ‘sqStoreBlobWriter::writeData(sqReadDataWriter*)’ at stores/sqStoreBlob.C:65:17: stores/sqStore.H:106:36: warning: ‘/blobs.’ directive output may be truncated writing 7 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 106 | snprintf(blobName, FILENAME_MAX, "%s/blobs.%04" F_U32P , storePath, blobNumber); In file included from /usr/include/stdio.h:964, from utility/src/utility/types.H:48, from utility/src/utility/runtime.H:26, from stores/sqStore.H:21: In function ‘snprintf’, inlined from ‘makeBlobName(char const*, unsigned int, char*)’ at stores/sqStore.H:106:11, inlined from ‘sqStoreBlobWriter::writeData(sqReadDataWriter*)’ at stores/sqStoreBlob.C:65:17: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4114 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovOverlap.C:201:2: warning: #warning NEEDS TO RETURN FALSE IF FAILED TO DECODE OVERLAP STRING [-Wcpp] 201 | #warning NEEDS TO RETURN FALSE IF FAILED TO DECODE OVERLAP STRING | ^~~~~~~ In function ‘makeBlobName(char const*, unsigned int, char*)’, inlined from ‘sqStoreBlobReader::getBuffer(sqReadMeta*)’ at stores/sqStoreBlob.C:113:17: stores/sqStore.H:106:36: warning: ‘/blobs.’ directive output may be truncated writing 7 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 106 | snprintf(blobName, FILENAME_MAX, "%s/blobs.%04" F_U32P , storePath, blobNumber); stores/sqStore.H:106:36: note: directive argument in the range [1, 65535] In function ‘snprintf’, inlined from ‘makeBlobName(char const*, unsigned int, char*)’ at stores/sqStore.H:106:11, inlined from ‘sqStoreBlobReader::getBuffer(sqReadMeta*)’ at stores/sqStoreBlob.C:113:17: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4109 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/lib/libcanu.a/stores/ovStore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/ovStore.C stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:329:32: warning: ‘/version.’ directive output may be truncated writing 9 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 329 | snprintf(No, FILENAME_MAX, "%s/version.%03" F_U32P, sqStore_path(), V); In file included from /usr/include/stdio.h:964, from utility/src/utility/types.H:48, from utility/src/utility/runtime.H:26, from stores/sqStore.H:21, from stores/sqStoreConstructor.C:18: In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:329:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 13 and 4109 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:337:35: warning: ‘/libraries’ directive output may be truncated writing 10 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 337 | snprintf(No, FILENAME_MAX, "%s/libraries", sqStore_path()); | ^~~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:337:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 11 and 4107 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:338:32: warning: ‘/version.’ directive output may be truncated writing 9 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 338 | snprintf(Nn, FILENAME_MAX, "%s/version.%03" F_U32P "/libraries", sqStore_path(), V); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:338:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 23 and 4126 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:341:35: warning: ‘/reads’ directive output may be truncated writing 6 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 341 | snprintf(No, FILENAME_MAX, "%s/reads", sqStore_path()); | ^~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:341:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 7 and 4103 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:342:32: warning: ‘/version.’ directive output may be truncated writing 9 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 342 | snprintf(Nn, FILENAME_MAX, "%s/version.%03" F_U32P "/reads", sqStore_path(), V); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:342:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 19 and 4122 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:345:35: warning: ‘/reads-rawu’ directive output may be truncated writing 11 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 345 | snprintf(No, FILENAME_MAX, "%s/reads-rawu", sqStore_path()); | ^~~~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:345:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4108 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:346:32: warning: ‘/version.’ directive output may be truncated writing 9 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 346 | snprintf(Nn, FILENAME_MAX, "%s/version.%03" F_U32P "/reads-rawu", sqStore_path(), V); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:346:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 24 and 4127 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:349:35: warning: ‘/reads-rawc’ directive output may be truncated writing 11 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 349 | snprintf(No, FILENAME_MAX, "%s/reads-rawc", sqStore_path()); | ^~~~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:349:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4108 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:350:32: warning: ‘/version.’ directive output may be truncated writing 9 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 350 | snprintf(Nn, FILENAME_MAX, "%s/version.%03" F_U32P "/reads-rawc", sqStore_path(), V); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:350:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 24 and 4127 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:353:35: warning: ‘/reads-coru’ directive output may be truncated writing 11 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 353 | snprintf(No, FILENAME_MAX, "%s/reads-coru", sqStore_path()); | ^~~~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:353:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4108 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:354:32: warning: ‘/version.’ directive output may be truncated writing 9 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 354 | snprintf(Nn, FILENAME_MAX, "%s/version.%03" F_U32P "/reads-coru", sqStore_path(), V); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:354:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 24 and 4127 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:357:35: warning: ‘/reads-corc’ directive output may be truncated writing 11 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 357 | snprintf(No, FILENAME_MAX, "%s/reads-corc", sqStore_path()); | ^~~~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:357:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4108 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:358:32: warning: ‘/version.’ directive output may be truncated writing 9 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 358 | snprintf(Nn, FILENAME_MAX, "%s/version.%03" F_U32P "/reads-corc", sqStore_path(), V); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:358:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 24 and 4127 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:361:35: warning: ‘/info’ directive output may be truncated writing 5 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 361 | snprintf(No, FILENAME_MAX, "%s/info", sqStore_path()); | ^~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:361:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 4102 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:362:32: warning: ‘/version.’ directive output may be truncated writing 9 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 362 | snprintf(Nn, FILENAME_MAX, "%s/version.%03" F_U32P "/info", sqStore_path(), V); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:362:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 18 and 4121 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:365:35: warning: ‘/info.txt’ directive output may be truncated writing 9 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 365 | snprintf(No, FILENAME_MAX, "%s/info.txt", sqStore_path()); | ^~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:365:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 10 and 4106 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:366:32: warning: ‘/version.’ directive output may be truncated writing 9 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 366 | snprintf(Nn, FILENAME_MAX, "%s/version.%03" F_U32P "/info.txt", sqStore_path(), V); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:366:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 22 and 4125 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreConstructor.C: In member function ‘sqStore::~sqStore()’: stores/sqStoreConstructor.C:332:34: warning: ‘/version.’ directive output may be truncated writing 9 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 332 | snprintf(No, FILENAME_MAX, "%s/version.%03" F_U32P, sqStore_path(), V); In function ‘snprintf’, inlined from ‘sqStore::~sqStore()’ at stores/sqStoreConstructor.C:332:15: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 13 and 4116 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovOverlap.C: In member function ‘char* ovOverlap::toString(char*, ovOverlapDisplayType, bool)’: stores/ovOverlap.C:55:20: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 55 | sprintf(str, "%10" F_U32P " %10" F_U32P " %c %6" F_U32P " %6" F_OVP " %6" F_OVP " %6" F_OVP " %6" F_OVP " %7.6f %s %s %s%s", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 59 | dat.ovl.ahg5, dat.ovl.ahg3, | ~~~~~~~~~~~~ | | | int stores/ovOverlap.C:55:20: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 55 | sprintf(str, "%10" F_U32P " %10" F_U32P " %c %6" F_U32P " %6" F_OVP " %6" F_OVP " %6" F_OVP " %6" F_OVP " %7.6f %s %s %s%s", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 59 | dat.ovl.ahg5, dat.ovl.ahg3, | ~~~~~~~~~~~~ | | | int stores/ovOverlap.C:55:20: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 55 | sprintf(str, "%10" F_U32P " %10" F_U32P " %c %6" F_U32P " %6" F_OVP " %6" F_OVP " %6" F_OVP " %6" F_OVP " %7.6f %s %s %s%s", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 60 | dat.ovl.bhg5, dat.ovl.bhg3, | ~~~~~~~~~~~~ | | | int stores/ovOverlap.C:55:20: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 10 has type ‘int’ [-Wformat=] 55 | sprintf(str, "%10" F_U32P " %10" F_U32P " %c %6" F_U32P " %6" F_OVP " %6" F_OVP " %6" F_OVP " %6" F_OVP " %7.6f %s %s %s%s", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 60 | dat.ovl.bhg5, dat.ovl.bhg3, | ~~~~~~~~~~~~ | | | int g++ -o /<>/build/obj/lib/libcanu.a/stores/ovStoreWriter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/ovStoreWriter.C stores/ovStoreWriter.C:33:2: warning: #warning not failing if a valid store [-Wcpp] 33 | #warning not failing if a valid store | ^~~~~~~ g++ -o /<>/build/obj/lib/libcanu.a/stores/ovStoreFilter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/ovStoreFilter.C g++ -o /<>/build/obj/lib/libcanu.a/stores/ovStoreFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/ovStoreFile.C stores/ovStoreWriter.C: In member function ‘ovStoreSliceWriter::loadBucketSizes(unsigned long*)’: stores/ovStoreWriter.C:190:37: warning: ‘/bucket’ directive output may be truncated writing 7 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 190 | snprintf(name, FILENAME_MAX, "%s/bucket%04u/slice%04u", _storePath, i, _sliceNum); | ^~~~~~~ In file included from /usr/include/stdio.h:964, from utility/src/utility/types.H:48, from utility/src/utility/runtime.H:26, from stores/ovStore.H:21, from stores/ovStoreWriter.C:18: In function ‘snprintf’, inlined from ‘ovStoreSliceWriter::loadBucketSizes(unsigned long*)’ at stores/ovStoreWriter.C:190:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 22 and 4130 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStoreWriter.C: In member function ‘ovStoreSliceWriter::loadBucketSizes(unsigned long*)’: stores/ovStoreWriter.C:199:37: warning: ‘/bucket’ directive output may be truncated writing 7 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 199 | snprintf(name, FILENAME_MAX, "%s/bucket%04u/sliceSizes", _storePath, i); | ^~~~~~~ In function ‘snprintf’, inlined from ‘ovStoreSliceWriter::loadBucketSizes(unsigned long*)’ at stores/ovStoreWriter.C:199:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 23 and 4125 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStoreWriter.C: In member function ‘ovStoreSliceWriter::loadOverlapsFromBucket(unsigned int, unsigned long, ovOverlap*, unsigned long&)’: stores/ovStoreWriter.C:222:35: warning: ‘/bucket’ directive output may be truncated writing 7 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 222 | snprintf(name, FILENAME_MAX, "%s/bucket%04u/slice%04u", _storePath, bucket, _sliceNum); | ^~~~~~~ In function ‘snprintf’, inlined from ‘ovStoreSliceWriter::loadOverlapsFromBucket(unsigned int, unsigned long, ovOverlap*, unsigned long&)’ at stores/ovStoreWriter.C:222:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 22 and 4130 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStoreWriter.C: In member function ‘ovStoreSliceWriter::writeOverlaps(ovOverlap*, unsigned long)’: stores/ovStoreWriter.C:306:40: warning: ‘/’ directive output may be truncated writing 1 byte into a region of size between 0 and 4096 [-Wformat-truncation=] 306 | snprintf(indexName, FILENAME_MAX, "%s/%04u.index", _storePath, _sliceNum); | ^ In function ‘snprintf’, inlined from ‘ovStoreSliceWriter::writeOverlaps(ovOverlap*, unsigned long)’ at stores/ovStoreWriter.C:306:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4114 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStore.H: In member function ‘ovStoreSliceWriter::writeOverlaps(ovOverlap*, unsigned long)’: stores/ovStore.H:88:39: warning: ‘/’ directive output may be truncated writing 1 byte into a region of size between 0 and 4096 [-Wformat-truncation=] 88 | snprintf(name, FILENAME_MAX, "%s/%04u.info", path, index); | ^ In function ‘snprintf’, inlined from ‘ovStoreInfo::save(char const*, unsigned int, bool)’ at stores/ovStore.H:88:15, inlined from ‘ovStoreSliceWriter::writeOverlaps(ovOverlap*, unsigned long)’ at stores/ovStoreWriter.C:311:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 11 and 4113 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStore.H: In member function ‘ovStoreSliceWriter::mergeInfoFiles()’: stores/ovStore.H:63:39: warning: ‘/’ directive output may be truncated writing 1 byte into a region of size between 0 and 4096 [-Wformat-truncation=] 63 | snprintf(name, FILENAME_MAX, "%s/%04u.info", path, index); | ^ In function ‘snprintf’, inlined from ‘ovStoreInfo::load(char const*, unsigned int, bool)’ at stores/ovStore.H:63:15, inlined from ‘ovStoreSliceWriter::mergeInfoFiles()’ at stores/ovStoreWriter.C:337:23: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 11 and 4113 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStoreWriter.C: In member function ‘ovStoreSliceWriter::mergeInfoFiles()’: stores/ovStoreWriter.C:366:42: warning: ‘/’ directive output may be truncated writing 1 byte into a region of size between 0 and 4096 [-Wformat-truncation=] 366 | snprintf(indexName, FILENAME_MAX, "%s/%04u.index", _storePath, ss); | ^ In function ‘snprintf’, inlined from ‘ovStoreSliceWriter::mergeInfoFiles()’ at stores/ovStoreWriter.C:366:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4114 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStore.H: In member function ‘ovStoreSliceWriter::mergeInfoFiles()’: stores/ovStore.H:86:39: warning: ‘/info’ directive output may be truncated writing 5 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 86 | snprintf(name, FILENAME_MAX, "%s/info", path); | ^~~~~ In function ‘snprintf’, inlined from ‘ovStoreInfo::save(char const*, unsigned int, bool)’ at stores/ovStore.H:86:15, inlined from ‘ovStoreSliceWriter::mergeInfoFiles()’ at stores/ovStoreWriter.C:389:12: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 4102 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/lib/libcanu.a/stores/ovStoreHistogram.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/ovStoreHistogram.C g++ -o /<>/build/obj/lib/libcanu.a/stores/tgStore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/tgStore.C stores/ovStoreWriter.C: In member function ‘ovStoreSliceWriter::removeOverlapSlice()’: stores/ovStoreWriter.C:448:37: warning: ‘/bucket’ directive output may be truncated writing 7 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 448 | snprintf(name, FILENAME_MAX, "%s/bucket%04u/slice%04u", _storePath, bb, _sliceNum); | ^~~~~~~ In function ‘snprintf’, inlined from ‘ovStoreSliceWriter::removeOverlapSlice()’ at stores/ovStoreWriter.C:448:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 22 and 4130 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStoreWriter.C: In member function ‘ovStoreSliceWriter::checkSortingIsComplete()’: stores/ovStoreWriter.C:467:38: warning: ‘/’ directive output may be truncated writing 1 byte into a region of size between 0 and 4096 [-Wformat-truncation=] 467 | snprintf(nameF, FILENAME_MAX, "%s/%04u.info", _storePath, i); | ^ In function ‘snprintf’, inlined from ‘ovStoreSliceWriter::checkSortingIsComplete()’ at stores/ovStoreWriter.C:467:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 11 and 4113 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStoreWriter.C: In member function ‘ovStoreSliceWriter::checkSortingIsComplete()’: stores/ovStoreWriter.C:468:38: warning: ‘/’ directive output may be truncated writing 1 byte into a region of size between 0 and 4096 [-Wformat-truncation=] 468 | snprintf(nameI, FILENAME_MAX, "%s/%04u.index", _storePath, i); | ^ In function ‘snprintf’, inlined from ‘ovStoreSliceWriter::checkSortingIsComplete()’ at stores/ovStoreWriter.C:468:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4114 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStoreWriter.C: In member function ‘ovStoreSliceWriter::removeAllIntermediateFiles()’: stores/ovStoreWriter.C:499:37: warning: ‘/’ directive output may be truncated writing 1 byte into a region of size between 0 and 4096 [-Wformat-truncation=] 499 | snprintf(name, FILENAME_MAX, "%s/%04u.index", _storePath, ss); | ^ In function ‘snprintf’, inlined from ‘ovStoreSliceWriter::removeAllIntermediateFiles()’ at stores/ovStoreWriter.C:499:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4114 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStoreWriter.C: In member function ‘ovStoreSliceWriter::removeAllIntermediateFiles()’: stores/ovStoreWriter.C:502:37: warning: ‘/’ directive output may be truncated writing 1 byte into a region of size between 0 and 4096 [-Wformat-truncation=] 502 | snprintf(name, FILENAME_MAX, "%s/%04u.info", _storePath, ss); | ^ In function ‘snprintf’, inlined from ‘ovStoreSliceWriter::removeAllIntermediateFiles()’ at stores/ovStoreWriter.C:502:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 11 and 4113 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStoreWriter.C: In member function ‘ovStoreSliceWriter::removeAllIntermediateFiles()’: stores/ovStoreWriter.C:519:37: warning: ‘/bucket’ directive output may be truncated writing 7 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 519 | snprintf(name, FILENAME_MAX, "%s/bucket%04u/sliceSizes", _storePath, bb); | ^~~~~~~ In function ‘snprintf’, inlined from ‘ovStoreSliceWriter::removeAllIntermediateFiles()’ at stores/ovStoreWriter.C:519:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 23 and 4125 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStoreWriter.C: In member function ‘ovStoreSliceWriter::removeAllIntermediateFiles()’: stores/ovStoreWriter.C:523:39: warning: ‘/bucket’ directive output may be truncated writing 7 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 523 | snprintf(name, FILENAME_MAX, "%s/bucket%04u/slice%04u", _storePath, bb, ss); | ^~~~~~~ In function ‘snprintf’, inlined from ‘ovStoreSliceWriter::removeAllIntermediateFiles()’ at stores/ovStoreWriter.C:523:15: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 22 and 4130 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/ovStoreWriter.C: In member function ‘ovStoreSliceWriter::removeAllIntermediateFiles()’: stores/ovStoreWriter.C:527:37: warning: ‘/bucket’ directive output may be truncated writing 7 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 527 | snprintf(name, FILENAME_MAX, "%s/bucket%04u", _storePath, bb); | ^~~~~~~ In function ‘snprintf’, inlined from ‘ovStoreSliceWriter::removeAllIntermediateFiles()’ at stores/ovStoreWriter.C:527:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4114 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/lib/libcanu.a/stores/tgTig.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/tgTig.C stores/ovStoreHistogram.C: In member function ‘void ovErateLengthHistogram::addOverlap(ovOverlap*)’: stores/ovStoreHistogram.C:337:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 5 has type ‘int’ [-Wformat=] 337 | fprintf(stderr, "BOGUS overlap - id %8u (len %6d) hangs %6" F_OVP " %6" F_OVP " -- id %8u (len %6d) hangs %6" F_OVP " %6" F_OVP "%s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 | overlap->a_iid, alen, overlap->dat.ovl.ahg5, overlap->dat.ovl.ahg3, | ~~~~~~~~~~~~~~~~~~~~~ | | | int stores/ovStoreHistogram.C:337:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘int’ [-Wformat=] 337 | fprintf(stderr, "BOGUS overlap - id %8u (len %6d) hangs %6" F_OVP " %6" F_OVP " -- id %8u (len %6d) hangs %6" F_OVP " %6" F_OVP "%s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 | overlap->a_iid, alen, overlap->dat.ovl.ahg5, overlap->dat.ovl.ahg3, | ~~~~~~~~~~~~~~~~~~~~~ | | | int stores/ovStoreHistogram.C:337:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 337 | fprintf(stderr, "BOGUS overlap - id %8u (len %6d) hangs %6" F_OVP " %6" F_OVP " -- id %8u (len %6d) hangs %6" F_OVP " %6" F_OVP "%s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 | overlap->a_iid, alen, overlap->dat.ovl.ahg5, overlap->dat.ovl.ahg3, 339 | overlap->b_iid, blen, overlap->dat.ovl.bhg5, overlap->dat.ovl.bhg3, | ~~~~~~~~~~~~~~~~~~~~~ | | | int stores/ovStoreHistogram.C:337:21: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 10 has type ‘int’ [-Wformat=] 337 | fprintf(stderr, "BOGUS overlap - id %8u (len %6d) hangs %6" F_OVP " %6" F_OVP " -- id %8u (len %6d) hangs %6" F_OVP " %6" F_OVP "%s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 | overlap->a_iid, alen, overlap->dat.ovl.ahg5, overlap->dat.ovl.ahg3, 339 | overlap->b_iid, blen, overlap->dat.ovl.bhg5, overlap->dat.ovl.bhg3, | ~~~~~~~~~~~~~~~~~~~~~ | | | int g++ -o /<>/build/obj/lib/libcanu.a/stores/tgTigSizeAnalysis.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/tgTigSizeAnalysis.C stores/tgTig.C: In member function ‘bool tgTig::loadLayout(FILE*)’: stores/tgTig.C:537:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 537 | fgets(LINE, LINEmax, F); LINEnum++; | ~~~~~^~~~~~~~~~~~~~~~~~ stores/tgTig.C:667:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 667 | fgets(LINE, LINEmax, F); LINEnum++; | ~~~~~^~~~~~~~~~~~~~~~~~ stores/tgStore.C: In member function ‘tgStore::purgeVersion(unsigned int)’: stores/tgStore.C:168:36: warning: ‘/seqDB.v’ directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 168 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.dat", _path, version); AS_UTL_unlink(_name); | ^~~~~~~~ stores/tgStore.C:168:33: note: using the range [-2147483648, 2147483647] for directive argument 168 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.dat", _path, version); AS_UTL_unlink(_name); | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from utility/src/utility/types.H:48, from utility/src/utility/runtime.H:26, from stores/tgStore.C:18: In function ‘snprintf’, inlined from ‘tgStore::purgeVersion(unsigned int)’ at stores/tgStore.C:168:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 4120 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/tgStore.C: In member function ‘tgStore::purgeVersion(unsigned int)’: stores/tgStore.C:169:36: warning: ‘/seqDB.v’ directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 169 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.ctg", _path, version); AS_UTL_unlink(_name); | ^~~~~~~~ stores/tgStore.C:169:33: note: using the range [-2147483648, 2147483647] for directive argument 169 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.ctg", _path, version); AS_UTL_unlink(_name); | ^~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘tgStore::purgeVersion(unsigned int)’ at stores/tgStore.C:169:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 4120 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/tgStore.C: In member function ‘tgStore::purgeVersion(unsigned int)’: stores/tgStore.C:170:36: warning: ‘/seqDB.v’ directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 170 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.utg", _path, version); AS_UTL_unlink(_name); | ^~~~~~~~ stores/tgStore.C:170:33: note: using the range [-2147483648, 2147483647] for directive argument 170 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.utg", _path, version); AS_UTL_unlink(_name); | ^~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘tgStore::purgeVersion(unsigned int)’ at stores/tgStore.C:170:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 4120 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/tgStore.C: In member function ‘tgStore::dumpMASR(tgStore::tgStoreEntry*&, unsigned int&, unsigned int)’: stores/tgStore.C:571:36: warning: ‘/seqDB.v’ directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 571 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.tig", _path, V); | ^~~~~~~~ stores/tgStore.C:571:33: note: using the range [-2147483648, 2147483647] for directive argument 571 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.tig", _path, V); | ^~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘tgStore::dumpMASR(tgStore::tgStoreEntry*&, unsigned int&, unsigned int)’ at stores/tgStore.C:571:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 4120 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/tgStore.C: In member function ‘tgStore::loadMASR(tgStore::tgStoreEntry*&, unsigned int&, unsigned int&, unsigned int)’: stores/tgStore.C:603:40: warning: ‘/seqDB.v’ directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 603 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.tig", _path, i); | ^~~~~~~~ stores/tgStore.C:603:37: note: directive argument in the range [1, 2147483647] 603 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.tig", _path, i); | ^~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘tgStore::loadMASR(tgStore::tgStoreEntry*&, unsigned int&, unsigned int&, unsigned int)’ at stores/tgStore.C:603:15: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 4119 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/tgStore.C: In member function ‘tgStore::loadMASR(tgStore::tgStoreEntry*&, unsigned int&, unsigned int&, unsigned int)’: stores/tgStore.C:614:36: warning: ‘/seqDB.v’ directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 614 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.tig", _path, V); | ^~~~~~~~ stores/tgStore.C:614:33: note: using the range [-2147483648, 2147483647] for directive argument 614 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.tig", _path, V); | ^~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘tgStore::loadMASR(tgStore::tgStoreEntry*&, unsigned int&, unsigned int&, unsigned int)’ at stores/tgStore.C:614:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 4120 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/tgStore.C: In member function ‘tgStore::loadMASR(tgStore::tgStoreEntry*&, unsigned int&, unsigned int&, unsigned int)’: stores/tgStore.C:618:38: warning: ‘/seqDB.v’ directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 618 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.tig", _path, V); | ^~~~~~~~ stores/tgStore.C:618:35: note: using the range [-2147483648, 2147483647] for directive argument 618 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.tig", _path, V); | ^~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘tgStore::loadMASR(tgStore::tgStoreEntry*&, unsigned int&, unsigned int&, unsigned int)’ at stores/tgStore.C:618:13: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 4120 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/tgStore.C: In member function ‘tgStore::openDB(unsigned int)’: stores/tgStore.C:672:36: warning: ‘/seqDB.v’ directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 672 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.dat", _path, version); | ^~~~~~~~ stores/tgStore.C:672:33: note: using the range [-2147483648, 2147483647] for directive argument 672 | snprintf(_name, FILENAME_MAX, "%s/seqDB.v%03d.dat", _path, version); | ^~~~~~~~~~~~~~~~~~~~ In function ‘snprintf’, inlined from ‘tgStore::openDB(unsigned int)’ at stores/tgStore.C:672:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 16 and 4120 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/lib/libcanu.a/stores/tgTigMultiAlignDisplay.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/tgTigMultiAlignDisplay.C g++ -o /<>/build/obj/lib/libcanu.a/stores/objectStore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap stores/objectStore.C g++ -o /<>/build/obj/lib/libcanu.a/overlapInCore/overlapReadCache.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap overlapInCore/overlapReadCache.C g++ -o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/Binomial_Bound.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap overlapInCore/liboverlap/Binomial_Bound.C g++ -o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/Display_Alignment.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap overlapInCore/liboverlap/Display_Alignment.C g++ -o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap overlapInCore/liboverlap/prefixEditDistance.C g++ -o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-allocateMoreSpace.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap overlapInCore/liboverlap/prefixEditDistance-allocateMoreSpace.C g++ -o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-extend.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap overlapInCore/liboverlap/prefixEditDistance-extend.C g++ -o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-forward.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap overlapInCore/liboverlap/prefixEditDistance-forward.C g++ -o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-reverse.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap overlapInCore/liboverlap/prefixEditDistance-reverse.C g++ -o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalign.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utgcns/libNDalign/NDalign.C g++ -o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/Binomial_Bound.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utgcns/libNDalign/Binomial_Bound.C g++ -o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm.C g++ -o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-allocateMoreSpace.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm-allocateMoreSpace.C g++ -o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-extend.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm-extend.C g++ -o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-forward.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm-forward.C g++ -o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-reverse.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utgcns/libNDalign/NDalgorithm-reverse.C g++ -o /<>/build/obj/lib/libcanu.a/utgcns/libpbutgcns/AlnGraphBoost.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap utgcns/libpbutgcns/AlnGraphBoost.C g++ -o /<>/build/obj/lib/libcanu.a/gfa/bed.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap gfa/bed.C g++ -o /<>/build/obj/lib/libcanu.a/gfa/gfa.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src -Iutility/src/utility -Iutility/src/parasail -Istores -Istores/libsnappy -Ialignment -Iutgcns/libNDalign -Iutgcns/libcns -Iutgcns/libpbutgcns -Iutgcns/libNDFalcon -Iutgcns/libboost -IoverlapInCore -IoverlapInCore/liboverlap gfa/gfa.C g++ -o /<>/build/obj/bin/dumpBlob/stores/dumpBlob.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/dumpBlob.C g++ -o /<>/build/obj/bin/ovStoreBuild/stores/ovStoreBuild.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/ovStoreBuild.C g++ -o /<>/build/obj/bin/ovStoreConfig/stores/ovStoreConfig.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/ovStoreConfig.C g++ -o /<>/build/obj/bin/ovStoreBucketizer/stores/ovStoreBucketizer.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/ovStoreBucketizer.C g++ -o /<>/build/obj/bin/ovStoreSorter/stores/ovStoreSorter.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/ovStoreSorter.C g++ -o /<>/build/obj/bin/ovStoreIndexer/stores/ovStoreIndexer.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/ovStoreIndexer.C g++ -o /<>/build/obj/bin/ovStoreDump/stores/ovStoreDump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/ovStoreDump.C g++ -o /<>/build/obj/bin/ovStoreStats/stores/ovStoreStats.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/ovStoreStats.C g++ -o /<>/build/obj/bin/sqStoreCreate/stores/sqStoreCreate.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/sqStoreCreate.C g++ -o /<>/build/obj/bin/sqStoreDumpFASTQ/stores/sqStoreDumpFASTQ.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Istores -Iutility/src/utility -IoverlapBasedTrimming stores/sqStoreDumpFASTQ.C g++ -o /<>/build/obj/bin/sqStoreDumpMetaData/stores/sqStoreDumpMetaData.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Iseqrequester/src/seqrequester stores/sqStoreDumpMetaData.C stores/sqStoreDumpFASTQ.C: In member function ‘libOutput::openFASTQ()’: stores/sqStoreDumpFASTQ.C:70:36: warning: ‘.fastq’ directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 70 | snprintf(N, FILENAME_MAX, "%s.fastq%s", _p, _s); | ^~~~~~ In file included from /usr/include/stdio.h:964, from utility/src/utility/types.H:48, from utility/src/utility/runtime.H:26, from stores/sqStoreDumpFASTQ.C:18: In function ‘snprintf’, inlined from ‘libOutput::openFASTQ()’ at stores/sqStoreDumpFASTQ.C:70:15: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 7 and 8197 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreDumpFASTQ.C: In member function ‘libOutput::openFASTQ()’: stores/sqStoreDumpFASTQ.C:68:37: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] 68 | snprintf(N, FILENAME_MAX, "%s.%s.fastq%s", _p, _n, _s); | ^~ In function ‘snprintf’, inlined from ‘libOutput::openFASTQ()’ at stores/sqStoreDumpFASTQ.C:68:15: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 8 and 12293 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreDumpFASTQ.C: In member function ‘libOutput::openFASTA()’: stores/sqStoreDumpFASTQ.C:100:36: warning: ‘.fasta’ directive output may be truncated writing 6 bytes into a region of size between 1 and 4096 [-Wformat-truncation=] 100 | snprintf(N, FILENAME_MAX, "%s.fasta%s", _p, _s); | ^~~~~~ In function ‘snprintf’, inlined from ‘libOutput::openFASTA()’ at stores/sqStoreDumpFASTQ.C:100:15: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 7 and 8197 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/sqStoreDumpFASTQ.C: In member function ‘libOutput::openFASTA()’: stores/sqStoreDumpFASTQ.C:98:37: warning: ‘%s’ directive output may be truncated writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-truncation=] 98 | snprintf(N, FILENAME_MAX, "%s.%s.fasta%s", _p, _n, _s); | ^~ In function ‘snprintf’, inlined from ‘libOutput::openFASTA()’ at stores/sqStoreDumpFASTQ.C:98:15: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 8 and 12293 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/bin/sqStoreDumpMetaData/seqrequester/src/seqrequester/summarize.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Iseqrequester/src/seqrequester seqrequester/src/seqrequester/summarize.C g++ -o /<>/build/obj/bin/tgStoreCompress/stores/tgStoreCompress.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/tgStoreCompress.C g++ -o /<>/build/obj/bin/tgStoreDump/stores/tgStoreDump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/tgStoreDump.C stores/tgStoreDump.C:643:2: warning: #warning replace this with genericStatistics [-Wcpp] 643 | #warning replace this with genericStatistics | ^~~~~~~ g++ -o /<>/build/obj/bin/tgStoreDump/stores/tgTigSizeAnalysis.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/tgTigSizeAnalysis.C g++ -o /<>/build/obj/bin/tgStoreLoad/stores/tgStoreLoad.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/tgStoreLoad.C g++ -o /<>/build/obj/bin/tgTigDisplay/stores/tgTigDisplay.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/tgTigDisplay.C g++ -o /<>/build/obj/bin/loadCorrectedReads/stores/loadCorrectedReads.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/loadCorrectedReads.C g++ -o /<>/build/obj/bin/loadTrimmedReads/stores/loadTrimmedReads.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Istores -Iutility/src/utility -IoverlapBasedTrimming stores/loadTrimmedReads.C g++ -o /<>/build/obj/bin/loadErates/stores/loadErates.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility stores/loadErates.C g++ -o /<>/build/obj/bin/meryl/meryl/src/meryl/meryl.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -DCANU -Iutility/src/utility -Istores meryl/src/meryl/meryl.C g++ -o /<>/build/obj/bin/meryl/meryl/src/meryl/merylCommandBuilder.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -DCANU -Iutility/src/utility -Istores meryl/src/meryl/merylCommandBuilder.C g++ -o /<>/build/obj/bin/meryl/meryl/src/meryl/merylCountArray.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -DCANU -Iutility/src/utility -Istores meryl/src/meryl/merylCountArray.C stores/loadErates.C: In member function ‘ovStore::addEvalues(std::vector >&)’: stores/loadErates.C:59:41: warning: ‘/evalues.WORKING’ directive output may be truncated writing 16 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 59 | snprintf(evalueTemp, FILENAME_MAX, "%s/evalues.WORKING", _storePath); | ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from utility/src/utility/types.H:48, from utility/src/utility/runtime.H:26, from stores/loadErates.C:18: In function ‘snprintf’, inlined from ‘ovStore::addEvalues(std::vector >&)’ at stores/loadErates.C:59:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 17 and 4113 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ stores/loadErates.C: In member function ‘ovStore::addEvalues(std::vector >&)’: stores/loadErates.C:60:41: warning: ‘/evalues’ directive output may be truncated writing 8 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 60 | snprintf(evalueName, FILENAME_MAX, "%s/evalues", _storePath); | ^~~~~~~~ In function ‘snprintf’, inlined from ‘ovStore::addEvalues(std::vector >&)’ at stores/loadErates.C:60:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 9 and 4105 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ meryl/src/meryl/merylCommandBuilder.C: In member function ‘merylCommandBuilder::initialize(char*)’: meryl/src/meryl/merylCommandBuilder.C:160:41: warning: ‘/merylIndex’ directive output may be truncated writing 11 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 160 | snprintf(_indexName, FILENAME_MAX, "%s/merylIndex", _optString); | ^~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from utility/src/utility/types.H:48, from utility/src/utility/runtime.H:26, from meryl/src/meryl/meryl.H:22, from meryl/src/meryl/merylCommandBuilder.C:19: In function ‘snprintf’, inlined from ‘merylCommandBuilder::initialize(char*)’ at meryl/src/meryl/merylCommandBuilder.C:160:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4108 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ meryl/src/meryl/merylCommandBuilder.C: In member function ‘merylCommandBuilder::initialize(char*)’: meryl/src/meryl/merylCommandBuilder.C:161:41: warning: ‘/info’ directive output may be truncated writing 5 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 161 | snprintf(_sqInfName, FILENAME_MAX, "%s/info", _optString); | ^~~~~ In function ‘snprintf’, inlined from ‘merylCommandBuilder::initialize(char*)’ at meryl/src/meryl/merylCommandBuilder.C:161:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 6 and 4102 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ meryl/src/meryl/merylCommandBuilder.C: In member function ‘merylCommandBuilder::initialize(char*)’: meryl/src/meryl/merylCommandBuilder.C:162:41: warning: ‘/reads’ directive output may be truncated writing 6 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 162 | snprintf(_sqRdsName, FILENAME_MAX, "%s/reads", _optString); | ^~~~~~ In function ‘snprintf’, inlined from ‘merylCommandBuilder::initialize(char*)’ at meryl/src/meryl/merylCommandBuilder.C:162:11: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 7 and 4103 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/bin/meryl/meryl/src/meryl/merylInput.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -DCANU -Iutility/src/utility -Istores meryl/src/meryl/merylInput.C g++ -o /<>/build/obj/bin/meryl/meryl/src/meryl/merylOp-count.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -DCANU -Iutility/src/utility -Istores meryl/src/meryl/merylOp-count.C g++ -o /<>/build/obj/bin/meryl/meryl/src/meryl/merylOp-countSimple.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -DCANU -Iutility/src/utility -Istores meryl/src/meryl/merylOp-countSimple.C g++ -o /<>/build/obj/bin/meryl/meryl/src/meryl/merylOp-countThreads.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -DCANU -Iutility/src/utility -Istores meryl/src/meryl/merylOp-countThreads.C g++ -o /<>/build/obj/bin/meryl/meryl/src/meryl/merylOp-histogram.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -DCANU -Iutility/src/utility -Istores meryl/src/meryl/merylOp-histogram.C g++ -o /<>/build/obj/bin/meryl/meryl/src/meryl/merylOp-nextMer.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -DCANU -Iutility/src/utility -Istores meryl/src/meryl/merylOp-nextMer.C g++ -o /<>/build/obj/bin/meryl/meryl/src/meryl/merylOp.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -DCANU -Iutility/src/utility -Istores meryl/src/meryl/merylOp.C g++ -o /<>/build/obj/bin/overlapCheck/overlapCheck/overlapCheck.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapCheck/overlapCheck.C g++ -o /<>/build/obj/bin/overlapInCore/overlapInCore/overlapInCore.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCore.C g++ -o /<>/build/obj/bin/overlapInCore/overlapInCore/overlapInCore-Build_Hash_Index.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCore-Build_Hash_Index.C g++ -o /<>/build/obj/bin/overlapInCore/overlapInCore/overlapInCore-Find_Overlaps.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCore-Find_Overlaps.C overlapInCore/overlapInCore-Build_Hash_Index.C: In function ‘void Mark_Skip_Kmers()’: overlapInCore/overlapInCore-Build_Hash_Index.C:209:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 209 | fgets(line, 1024, F); | ~~~~~^~~~~~~~~~~~~~~ g++ -o /<>/build/obj/bin/overlapInCore/overlapInCore/overlapInCore-Output.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCore-Output.C g++ -o /<>/build/obj/bin/overlapInCore/overlapInCore/overlapInCore-Process_Overlaps.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCore-Process_Overlaps.C g++ -o /<>/build/obj/bin/overlapInCore/overlapInCore/overlapInCore-Process_String_Overlaps.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCore-Process_String_Overlaps.C g++ -o /<>/build/obj/bin/overlapInCorePartition/overlapInCore/overlapInCorePartition.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapInCore/overlapInCorePartition.C g++ -o /<>/build/obj/bin/overlapConvert/overlapInCore/overlapConvert.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapInCore/overlapConvert.C g++ -o /<>/build/obj/bin/overlapImport/overlapInCore/overlapImport.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapInCore/overlapImport.C g++ -o /<>/build/obj/bin/overlapPair/overlapInCore/overlapPair.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/libedlib overlapInCore/overlapPair.C g++ -o /<>/build/obj/bin/edalign/overlapInCore/edalign.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/libedlib overlapInCore/edalign.C g++ -o /<>/build/obj/bin/prefixEditDistance-matchLimitGenerate/overlapInCore/liboverlap/prefixEditDistance-matchLimitGenerate.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapInCore/liboverlap/prefixEditDistance-matchLimitGenerate.C overlapInCore/overlapPair.C:463:2: warning: #warning do we need to check for contained too? [-Wcpp] 463 | #warning do we need to check for contained too? | ^~~~~~~ overlapInCore/overlapImport.C: In function ‘int main(int, char**)’: overlapInCore/overlapImport.C:254:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 254 | fgets(S, 1024, in->file()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ overlapInCore/overlapImport.C:284:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 284 | fgets(S, 1024, in->file()); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ overlapInCore/edalign.C: In function ‘bool readLine(FILE*, char*, int32, int32&, splitToWords&)’: overlapInCore/edalign.C:30:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 30 | fgets(line, lineMax, file); | ~~~~~^~~~~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/bin/mhapConvert/mhap/mhapConvert.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -Imhap/liboverlap mhap/mhapConvert.C g++ -o /<>/build/obj/bin/mmapConvert/minimap/mmapConvert.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -Iminimap/liboverlap minimap/mmapConvert.C g++ -o /<>/build/obj/bin/filterCorrectionOverlaps/correction/filterCorrectionOverlaps.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores correction/filterCorrectionOverlaps.C mhap/mhapConvert.C: In function ‘int main(int, char**)’: mhap/mhapConvert.C:147:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 147 | fprintf(stderr, "%s\nINVALID OVERLAP read " F_U32 " (len %d) and read " F_U32 " (len %d) hangs " F_OV "/" F_OV " and " F_OV "/" F_OV "%s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 151 | ov.dat.ovl.ahg5, ov.dat.ovl.ahg3, | ~~~~~~~~~~~~~~~ | | | int mhap/mhapConvert.C:147:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 147 | fprintf(stderr, "%s\nINVALID OVERLAP read " F_U32 " (len %d) and read " F_U32 " (len %d) hangs " F_OV "/" F_OV " and " F_OV "/" F_OV "%s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 151 | ov.dat.ovl.ahg5, ov.dat.ovl.ahg3, | ~~~~~~~~~~~~~~~ | | | int mhap/mhapConvert.C:147:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 10 has type ‘int’ [-Wformat=] 147 | fprintf(stderr, "%s\nINVALID OVERLAP read " F_U32 " (len %d) and read " F_U32 " (len %d) hangs " F_OV "/" F_OV " and " F_OV "/" F_OV "%s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 152 | ov.dat.ovl.bhg5, ov.dat.ovl.bhg3, | ~~~~~~~~~~~~~~~ | | | int mhap/mhapConvert.C:147:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 11 has type ‘int’ [-Wformat=] 147 | fprintf(stderr, "%s\nINVALID OVERLAP read " F_U32 " (len %d) and read " F_U32 " (len %d) hangs " F_OV "/" F_OV " and " F_OV "/" F_OV "%s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 152 | ov.dat.ovl.bhg5, ov.dat.ovl.bhg3, | ~~~~~~~~~~~~~~~ | | | int g++ -o /<>/build/obj/bin/generateCorrectionLayouts/correction/generateCorrectionLayouts.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -Iutgcns correction/generateCorrectionLayouts.C minimap/mmapConvert.C: In function ‘int main(int, char**)’: minimap/mmapConvert.C:127:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘int’ [-Wformat=] 127 | fprintf(stderr, "INVALID OVERLAP " F_U32 " (len %6d) " F_U32 " (len %6d) hangs " F_OV " " F_OV " - " F_OV " " F_OV "%s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 130 | ov.dat.ovl.ahg5, ov.dat.ovl.ahg3, | ~~~~~~~~~~~~~~~ | | | int minimap/mmapConvert.C:127:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘int’ [-Wformat=] 127 | fprintf(stderr, "INVALID OVERLAP " F_U32 " (len %6d) " F_U32 " (len %6d) hangs " F_OV " " F_OV " - " F_OV " " F_OV "%s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 130 | ov.dat.ovl.ahg5, ov.dat.ovl.ahg3, | ~~~~~~~~~~~~~~~ | | | int minimap/mmapConvert.C:127:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 9 has type ‘int’ [-Wformat=] 127 | fprintf(stderr, "INVALID OVERLAP " F_U32 " (len %6d) " F_U32 " (len %6d) hangs " F_OV " " F_OV " - " F_OV " " F_OV "%s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 131 | ov.dat.ovl.bhg5, ov.dat.ovl.bhg3, | ~~~~~~~~~~~~~~~ | | | int minimap/mmapConvert.C:127:25: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 10 has type ‘int’ [-Wformat=] 127 | fprintf(stderr, "INVALID OVERLAP " F_U32 " (len %6d) " F_U32 " (len %6d) hangs " F_OV " " F_OV " - " F_OV " " F_OV "%s\n", | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ...... 131 | ov.dat.ovl.bhg5, ov.dat.ovl.bhg3, | ~~~~~~~~~~~~~~~ | | | int g++ -o /<>/build/obj/bin/generateCorrectionLayouts/utgcns/stashContains.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -Iutgcns utgcns/stashContains.C g++ -o /<>/build/obj/bin/filterCorrectionLayouts/correction/filterCorrectionLayouts.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores correction/filterCorrectionLayouts.C g++ -o /<>/build/obj/bin/falconsense/correction/falconsense.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -Iutgcns correction/falconsense.C g++ -o /<>/build/obj/bin/falconsense/utgcns/stashContains.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -Iutgcns utgcns/stashContains.C g++ -o /<>/build/obj/bin/errorEstimate/correction/errorEstimate.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore -Iutgcns/libNDalign -IoverlapErrorAdjustment correction/errorEstimate.C correction/falconsense.C: In function ‘void loadReadList(const char*, uint32, uint32, std::set&)’: correction/falconsense.C:64:13: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 64 | for (fgets(L, 1024, R); | ~~~~~^~~~~~~~~~~~ correction/falconsense.C:66:13: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 66 | fgets(L, 1024, R)) { | ~~~~~^~~~~~~~~~~~ g++ -o /<>/build/obj/bin/splitHaplotype/haplotyping/splitHaplotype.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -Iutgcns haplotyping/splitHaplotype.C g++ -o /<>/build/obj/bin/trimReads/overlapBasedTrimming/trimReads.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapBasedTrimming/trimReads.C In file included from overlapBasedTrimming/trimReads.C:19: overlapBasedTrimming/trimStat.H: In member function ‘void trimStat::generatePlots(const char*, const char*, uint32)’: overlapBasedTrimming/trimStat.H:69:11: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | system(N); | ~~~~~~^~~ g++ -o /<>/build/obj/bin/trimReads/overlapBasedTrimming/trimReads-bestEdge.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapBasedTrimming/trimReads-bestEdge.C g++ -o /<>/build/obj/bin/trimReads/overlapBasedTrimming/trimReads-largestCovered.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapBasedTrimming/trimReads-largestCovered.C g++ -o /<>/build/obj/bin/splitReads/overlapBasedTrimming/splitReads.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapBasedTrimming/splitReads.C g++ -o /<>/build/obj/bin/splitReads/overlapBasedTrimming/splitReads-workUnit.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapBasedTrimming/splitReads-workUnit.C g++ -o /<>/build/obj/bin/splitReads/overlapBasedTrimming/splitReads-subReads.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapBasedTrimming/splitReads-subReads.C g++ -o /<>/build/obj/bin/splitReads/overlapBasedTrimming/splitReads-trimBad.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapBasedTrimming/splitReads-trimBad.C g++ -o /<>/build/obj/bin/splitReads/overlapBasedTrimming/adjustNormal.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapBasedTrimming/adjustNormal.C g++ -o /<>/build/obj/bin/splitReads/overlapBasedTrimming/adjustFlipped.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapBasedTrimming/adjustFlipped.C g++ -o /<>/build/obj/bin/mergeRanges/overlapBasedTrimming/mergeRanges.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapBasedTrimming/mergeRanges.C g++ -o /<>/build/obj/bin/overlapAlign/overlapAlign/overlapAlign.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/libedlib overlapAlign/overlapAlign.C g++ -o /<>/build/obj/bin/overlapAlign/overlapAlign/computeOverlapAlignment.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/libedlib overlapAlign/computeOverlapAlignment.C g++ -o /<>/build/obj/bin/overlapAlign/overlapAlign/trimRead.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/libedlib overlapAlign/trimRead.C g++ -o /<>/build/obj/bin/overlapAlign/overlapAlign/clearRangeFile.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/libedlib overlapAlign/clearRangeFile.C g++ -o /<>/build/obj/bin/overlapAlign/overlapAlign/computeAlignments.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/libedlib overlapAlign/computeAlignments.C g++ -o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/findErrors.C g++ -o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Analyze_Alignment.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/findErrors-Analyze_Alignment.C g++ -o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Output.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/findErrors-Output.C g++ -o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Prefix_Edit_Distance.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/findErrors-Prefix_Edit_Distance.C g++ -o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Process_Olap.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/findErrors-Process_Olap.C g++ -o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Read_Frags.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/findErrors-Read_Frags.C g++ -o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/computeDiff.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/computeDiff.C g++ -o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Read_Olaps.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/findErrors-Read_Olaps.C g++ -o /<>/build/obj/bin/fixErrors/overlapErrorAdjustment/fixErrors.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapErrorAdjustment/fixErrors.C g++ -o /<>/build/obj/bin/fixErrors/overlapErrorAdjustment/correctOverlaps-Correct_Frags.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores overlapErrorAdjustment/correctOverlaps-Correct_Frags.C g++ -o /<>/build/obj/bin/findErrors-Dump/overlapErrorAdjustment/findErrors-Dump.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/findErrors-Dump.C g++ -o /<>/build/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/correctOverlaps.C g++ -o /<>/build/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Correct_Frags.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/correctOverlaps-Correct_Frags.C g++ -o /<>/build/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Read_Olaps.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/correctOverlaps-Read_Olaps.C g++ -o /<>/build/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Redo_Olaps.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/correctOverlaps-Redo_Olaps.C g++ -o /<>/build/obj/bin/correctOverlaps/overlapErrorAdjustment/computeDiff.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/computeDiff.C g++ -o /<>/build/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Prefix_Edit_Distance.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/liboverlap overlapErrorAdjustment/correctOverlaps-Prefix_Edit_Distance.C g++ -o /<>/build/obj/bin/bogart/bogart/bogart.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/bogart.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_AssemblyGraph.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_AssemblyGraph.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_BestOverlapGraph.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_BestOverlapGraph.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_ChunkGraph.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_ChunkGraph.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_DetectSpurs.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_DetectSpurs.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_Instrumentation.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_Instrumentation.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_FindCircular.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_FindCircular.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_Logging.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_Logging.C bogart/AS_BAT_Logging.C: In member function ‘logFileInstance::open()’: bogart/AS_BAT_Logging.C:115:36: warning: ‘.num’ directive output may be truncated writing 4 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 115 | snprintf(_path, FILENAME_MAX, "%s.num%03d.log", _name, _part); | ^~~~ In member function ‘logFileInstance::open()’, inlined from ‘logFileInstance::open()’ at bogart/AS_BAT_Logging.C:110:1: bogart/AS_BAT_Logging.C:115:33: note: using the range [-2147483648, 2147483647] for directive argument 115 | snprintf(_path, FILENAME_MAX, "%s.num%03d.log", _name, _part); | ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from utility/src/utility/types.H:48, from utility/src/utility/system.H:23, from bogart/AS_BAT_Logging.C:18: In function ‘snprintf’, inlined from ‘logFileInstance::open()’ at bogart/AS_BAT_Logging.C:115:11, inlined from ‘logFileInstance::open()’ at bogart/AS_BAT_Logging.C:110:1: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4116 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_MarkRepeatReads.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_MarkRepeatReads.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_MergeOrphans.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_MergeOrphans.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_OptimizePositions.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_OptimizePositions.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_Outputs.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_Outputs.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_OverlapCache.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_OverlapCache.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_PlaceContains.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_PlaceContains.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_PlaceReadUsingOverlaps.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_PlaceReadUsingOverlaps.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_PopulateUnitig.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_PopulateUnitig.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_PromoteToSingleton.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_PromoteToSingleton.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_ReadInfo.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_ReadInfo.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_SetParentAndHang.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_SetParentAndHang.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_SplitDiscontinuous.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_SplitDiscontinuous.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_SplitTig_AtReadEnds.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_SplitTig_AtReadEnds.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_TigVector.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_TigVector.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_Unitig.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_Unitig.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_Unitig_AddRead.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_Unitig_AddRead.C g++ -o /<>/build/obj/bin/bogart/bogart/AS_BAT_Unitig_PlaceReadUsingEdges.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_Unitig_PlaceReadUsingEdges.C g++ -o /<>/build/obj/bin/layoutReads/bogart/layoutReads.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/layoutReads.C g++ -o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_Instrumentation.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_Instrumentation.C g++ -o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_Logging.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_Logging.C g++ -o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_OptimizePositions.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_OptimizePositions.C bogart/AS_BAT_Logging.C: In member function ‘logFileInstance::open()’: bogart/AS_BAT_Logging.C:115:36: warning: ‘.num’ directive output may be truncated writing 4 bytes into a region of size between 0 and 4096 [-Wformat-truncation=] 115 | snprintf(_path, FILENAME_MAX, "%s.num%03d.log", _name, _part); | ^~~~ In member function ‘logFileInstance::open()’, inlined from ‘logFileInstance::open()’ at bogart/AS_BAT_Logging.C:110:1: bogart/AS_BAT_Logging.C:115:33: note: using the range [-2147483648, 2147483647] for directive argument 115 | snprintf(_path, FILENAME_MAX, "%s.num%03d.log", _name, _part); | ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:964, from utility/src/utility/types.H:48, from utility/src/utility/system.H:23, from bogart/AS_BAT_Logging.C:18: In function ‘snprintf’, inlined from ‘logFileInstance::open()’ at bogart/AS_BAT_Logging.C:115:11, inlined from ‘logFileInstance::open()’ at bogart/AS_BAT_Logging.C:110:1: /usr/include/s390x-linux-gnu/bits/stdio2.h:54:35: note: ‘__snprintf_chk’ output between 12 and 4116 bytes into a destination of size 4096 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_Outputs.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_Outputs.C g++ -o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_OverlapCache.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_OverlapCache.C g++ -o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_PlaceContains.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_PlaceContains.C g++ -o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_PlaceReadUsingOverlaps.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_PlaceReadUsingOverlaps.C g++ -o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_ReadInfo.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_ReadInfo.C g++ -o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_SetParentAndHang.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_SetParentAndHang.C g++ -o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_TigVector.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_TigVector.C g++ -o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_Unitig.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_Unitig.C g++ -o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_Unitig_AddRead.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_Unitig_AddRead.C g++ -o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_Unitig_PlaceReadUsingEdges.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores bogart/AS_BAT_Unitig_PlaceReadUsingEdges.C g++ -o /<>/build/obj/bin/utgcns/utgcns/utgcns.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Iutility/src/parasail -Istores -Iutgcns/libpbutgcns -Iutgcns/libboost utgcns/utgcns.C g++ -o /<>/build/obj/bin/utgcns/utgcns/stashContains.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Iutility/src/parasail -Istores -Iutgcns/libpbutgcns -Iutgcns/libboost utgcns/stashContains.C g++ -o /<>/build/obj/bin/utgcns/utgcns/unitigConsensus.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Iutility/src/parasail -Istores -Iutgcns/libpbutgcns -Iutgcns/libboost utgcns/unitigConsensus.C g++ -o /<>/build/obj/bin/alignGFA/gfa/alignGFA.o -c -MD -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fdebug-prefix-map=/<>=/usr/src/canu-2.2+dfsg-5 -pthread -fopenmp -fPIC -DLIBBACKTRACE -I/<>/src -Iutility/src/utility -Istores -IoverlapInCore/libedlib gfa/alignGFA.C gfa/alignGFA.C: In function ‘void dotplot(uint32, bool, char*, uint32, bool, char*)’: gfa/alignGFA.C:148:9: warning: ignoring return value of ‘int system(const char*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 148 | system(Pname); | ~~~~~~^~~~~~~ cp -pf pipelines/canu.pl /<>/build/bin/canu cp -pf pipelines/canu-time.pl /<>/build/bin/canu-time cp -pf pipelines/draw-tig.pl /<>/build/bin/draw-tig cp -pf pipelines/canu/Consensus.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/CorrectReads.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/HaplotypeReads.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Configure.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Defaults.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Execution.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/SequenceStore.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Grid.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Grid_Cloud.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Grid_DNANexus.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Grid_LSF.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Grid_Local.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Grid_PBSTorque.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Grid_SGE.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Grid_Slurm.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Meryl.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Output.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/OverlapBasedTrimming.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/OverlapErrorAdjustment.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/OverlapInCore.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/OverlapMhap.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/OverlapMMap.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/OverlapStore.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Report.pm /<>/build/lib/site_perl/canu/ cp -pf pipelines/canu/Unitig.pm /<>/build/lib/site_perl/canu/ ar rv /<>/build/lib/libcanu.a /<>/build/obj/lib/libcanu.a/utility/src/utility/runtime.o /<>/build/obj/lib/libcanu.a/utility/src/utility/align-parasail-driver.o /<>/build/obj/lib/libcanu.a/utility/src/utility/edlib.o /<>/build/obj/lib/libcanu.a/utility/src/utility/files.o /<>/build/obj/lib/libcanu.a/utility/src/utility/files-buffered.o /<>/build/obj/lib/libcanu.a/utility/src/utility/files-compressed.o /<>/build/obj/lib/libcanu.a/utility/src/utility/files-fasta-fastq.o /<>/build/obj/lib/libcanu.a/utility/src/utility/files-memoryMapped.o /<>/build/obj/lib/libcanu.a/utility/src/utility/logging.o /<>/build/obj/lib/libcanu.a/utility/src/utility/strings.o /<>/build/obj/lib/libcanu.a/utility/src/utility/system.o /<>/build/obj/lib/libcanu.a/utility/src/utility/system-stackTrace.o /<>/build/obj/lib/libcanu.a/utility/src/utility/sequence.o /<>/build/obj/lib/libcanu.a/utility/src/utility/types.o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-exact.o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-files.o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-histogram.o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-reader.o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-writer-block.o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-writer-stream.o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-writer.o /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers.o /<>/build/obj/lib/libcanu.a/utility/src/utility/bits.o /<>/build/obj/lib/libcanu.a/utility/src/utility/bits-wordArray.o /<>/build/obj/lib/libcanu.a/utility/src/utility/hexDump.o /<>/build/obj/lib/libcanu.a/utility/src/utility/md5.o /<>/build/obj/lib/libcanu.a/utility/src/utility/mt19937ar.o /<>/build/obj/lib/libcanu.a/utility/src/utility/speedCounter.o /<>/build/obj/lib/libcanu.a/utility/src/utility/sweatShop.o /<>/build/obj/lib/libcanu.a/utility/src/parasail/cpuid.o /<>/build/obj/lib/libcanu.a/utility/src/parasail/memory.o /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg.o /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg_trace.o /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg_qx_dispatch.o /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg_qb_de_dispatch.o /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg_qe_db_dispatch.o /<>/build/obj/lib/libcanu.a/utility/src/parasail/cigar.o /<>/build/obj/lib/libcanu.a/correction/computeGlobalScore.o /<>/build/obj/lib/libcanu.a/correction/falconConsensus.o /<>/build/obj/lib/libcanu.a/correction/falconConsensus-alignTag.o /<>/build/obj/lib/libcanu.a/stores/sqCache.o /<>/build/obj/lib/libcanu.a/stores/sqLibrary.o /<>/build/obj/lib/libcanu.a/stores/sqReadData.o /<>/build/obj/lib/libcanu.a/stores/sqReadDataWriter.o /<>/build/obj/lib/libcanu.a/stores/sqStore.o /<>/build/obj/lib/libcanu.a/stores/sqStoreBlob.o /<>/build/obj/lib/libcanu.a/stores/sqStoreConstructor.o /<>/build/obj/lib/libcanu.a/stores/sqStoreInfo.o /<>/build/obj/lib/libcanu.a/stores/ovOverlap.o /<>/build/obj/lib/libcanu.a/stores/ovStore.o /<>/build/obj/lib/libcanu.a/stores/ovStoreWriter.o /<>/build/obj/lib/libcanu.a/stores/ovStoreFilter.o /<>/build/obj/lib/libcanu.a/stores/ovStoreFile.o /<>/build/obj/lib/libcanu.a/stores/ovStoreHistogram.o /<>/build/obj/lib/libcanu.a/stores/tgStore.o /<>/build/obj/lib/libcanu.a/stores/tgTig.o /<>/build/obj/lib/libcanu.a/stores/tgTigSizeAnalysis.o /<>/build/obj/lib/libcanu.a/stores/tgTigMultiAlignDisplay.o /<>/build/obj/lib/libcanu.a/stores/objectStore.o /<>/build/obj/lib/libcanu.a/overlapInCore/overlapReadCache.o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/Binomial_Bound.o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/Display_Alignment.o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance.o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-allocateMoreSpace.o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-extend.o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-forward.o /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-reverse.o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalign.o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/Binomial_Bound.o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm.o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-allocateMoreSpace.o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-extend.o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-forward.o /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-reverse.o /<>/build/obj/lib/libcanu.a/utgcns/libpbutgcns/AlnGraphBoost.o /<>/build/obj/lib/libcanu.a/gfa/gfa.o /<>/build/obj/lib/libcanu.a/gfa/bed.o ar: creating /<>/build/lib/libcanu.a a - /<>/build/obj/lib/libcanu.a/utility/src/utility/runtime.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/align-parasail-driver.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/edlib.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/files.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/files-buffered.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/files-compressed.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/files-fasta-fastq.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/files-memoryMapped.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/logging.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/strings.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/system.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/system-stackTrace.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/sequence.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/types.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-exact.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-files.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-histogram.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-reader.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-writer-block.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-writer-stream.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers-writer.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/kmers.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/bits.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/bits-wordArray.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/hexDump.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/md5.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/mt19937ar.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/speedCounter.o a - /<>/build/obj/lib/libcanu.a/utility/src/utility/sweatShop.o a - /<>/build/obj/lib/libcanu.a/utility/src/parasail/cpuid.o a - /<>/build/obj/lib/libcanu.a/utility/src/parasail/memory.o a - /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg.o a - /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg_trace.o a - /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg_qx_dispatch.o a - /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg_qb_de_dispatch.o a - /<>/build/obj/lib/libcanu.a/utility/src/parasail/sg_qe_db_dispatch.o a - /<>/build/obj/lib/libcanu.a/utility/src/parasail/cigar.o a - /<>/build/obj/lib/libcanu.a/correction/computeGlobalScore.o a - /<>/build/obj/lib/libcanu.a/correction/falconConsensus.o a - /<>/build/obj/lib/libcanu.a/correction/falconConsensus-alignTag.o a - /<>/build/obj/lib/libcanu.a/stores/sqCache.o a - /<>/build/obj/lib/libcanu.a/stores/sqLibrary.o a - /<>/build/obj/lib/libcanu.a/stores/sqReadData.o a - /<>/build/obj/lib/libcanu.a/stores/sqReadDataWriter.o a - /<>/build/obj/lib/libcanu.a/stores/sqStore.o a - /<>/build/obj/lib/libcanu.a/stores/sqStoreBlob.o a - /<>/build/obj/lib/libcanu.a/stores/sqStoreConstructor.o a - /<>/build/obj/lib/libcanu.a/stores/sqStoreInfo.o a - /<>/build/obj/lib/libcanu.a/stores/ovOverlap.o a - /<>/build/obj/lib/libcanu.a/stores/ovStore.o a - /<>/build/obj/lib/libcanu.a/stores/ovStoreWriter.o a - /<>/build/obj/lib/libcanu.a/stores/ovStoreFilter.o a - /<>/build/obj/lib/libcanu.a/stores/ovStoreFile.o a - /<>/build/obj/lib/libcanu.a/stores/ovStoreHistogram.o a - /<>/build/obj/lib/libcanu.a/stores/tgStore.o a - /<>/build/obj/lib/libcanu.a/stores/tgTig.o a - /<>/build/obj/lib/libcanu.a/stores/tgTigSizeAnalysis.o a - /<>/build/obj/lib/libcanu.a/stores/tgTigMultiAlignDisplay.o a - /<>/build/obj/lib/libcanu.a/stores/objectStore.o a - /<>/build/obj/lib/libcanu.a/overlapInCore/overlapReadCache.o a - /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/Binomial_Bound.o a - /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/Display_Alignment.o a - /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance.o a - /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-allocateMoreSpace.o a - /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-extend.o a - /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-forward.o a - /<>/build/obj/lib/libcanu.a/overlapInCore/liboverlap/prefixEditDistance-reverse.o a - /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalign.o a - /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/Binomial_Bound.o a - /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm.o a - /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-allocateMoreSpace.o a - /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-extend.o a - /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-forward.o a - /<>/build/obj/lib/libcanu.a/utgcns/libNDalign/NDalgorithm-reverse.o a - /<>/build/obj/lib/libcanu.a/utgcns/libpbutgcns/AlnGraphBoost.o a - /<>/build/obj/lib/libcanu.a/gfa/gfa.o a - /<>/build/obj/lib/libcanu.a/gfa/bed.o g++ -o /<>/build/bin/dumpBlob -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/dumpBlob/stores/dumpBlob.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/ovStoreBuild -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/ovStoreBuild/stores/ovStoreBuild.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/ovStoreConfig -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/ovStoreConfig/stores/ovStoreConfig.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/ovStoreBucketizer -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/ovStoreBucketizer/stores/ovStoreBucketizer.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/ovStoreSorter -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/ovStoreSorter/stores/ovStoreSorter.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/ovStoreIndexer -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/ovStoreIndexer/stores/ovStoreIndexer.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/ovStoreDump -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/ovStoreDump/stores/ovStoreDump.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/ovStoreStats -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/ovStoreStats/stores/ovStoreStats.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/sqStoreCreate -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/sqStoreCreate/stores/sqStoreCreate.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/sqStoreDumpFASTQ -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/sqStoreDumpFASTQ/stores/sqStoreDumpFASTQ.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/sqStoreDumpMetaData -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/sqStoreDumpMetaData/stores/sqStoreDumpMetaData.o /<>/build/obj/bin/sqStoreDumpMetaData/seqrequester/src/seqrequester/summarize.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/tgStoreCompress -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/tgStoreCompress/stores/tgStoreCompress.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/tgStoreDump -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/tgStoreDump/stores/tgStoreDump.o /<>/build/obj/bin/tgStoreDump/stores/tgTigSizeAnalysis.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/tgStoreLoad -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/tgStoreLoad/stores/tgStoreLoad.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/tgTigDisplay -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/tgTigDisplay/stores/tgTigDisplay.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/loadCorrectedReads -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/loadCorrectedReads/stores/loadCorrectedReads.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/loadTrimmedReads -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/loadTrimmedReads/stores/loadTrimmedReads.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/loadErates -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/loadErates/stores/loadErates.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/meryl -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/meryl/meryl/src/meryl/meryl.o /<>/build/obj/bin/meryl/meryl/src/meryl/merylCommandBuilder.o /<>/build/obj/bin/meryl/meryl/src/meryl/merylCountArray.o /<>/build/obj/bin/meryl/meryl/src/meryl/merylInput.o /<>/build/obj/bin/meryl/meryl/src/meryl/merylOp-count.o /<>/build/obj/bin/meryl/meryl/src/meryl/merylOp-countSimple.o /<>/build/obj/bin/meryl/meryl/src/meryl/merylOp-countThreads.o /<>/build/obj/bin/meryl/meryl/src/meryl/merylOp-histogram.o /<>/build/obj/bin/meryl/meryl/src/meryl/merylOp-nextMer.o /<>/build/obj/bin/meryl/meryl/src/meryl/merylOp.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/overlapCheck -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/overlapCheck/overlapCheck/overlapCheck.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/overlapInCore -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/overlapInCore/overlapInCore/overlapInCore.o /<>/build/obj/bin/overlapInCore/overlapInCore/overlapInCore-Build_Hash_Index.o /<>/build/obj/bin/overlapInCore/overlapInCore/overlapInCore-Find_Overlaps.o /<>/build/obj/bin/overlapInCore/overlapInCore/overlapInCore-Output.o /<>/build/obj/bin/overlapInCore/overlapInCore/overlapInCore-Process_Overlaps.o /<>/build/obj/bin/overlapInCore/overlapInCore/overlapInCore-Process_String_Overlaps.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/overlapInCorePartition -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/overlapInCorePartition/overlapInCore/overlapInCorePartition.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/overlapConvert -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/overlapConvert/overlapInCore/overlapConvert.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/overlapImport -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/overlapImport/overlapInCore/overlapImport.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/overlapPair -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/overlapPair/overlapInCore/overlapPair.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/edalign -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/edalign/overlapInCore/edalign.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/prefixEditDistance-matchLimitGenerate -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/prefixEditDistance-matchLimitGenerate/overlapInCore/liboverlap/prefixEditDistance-matchLimitGenerate.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/mhapConvert -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/mhapConvert/mhap/mhapConvert.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/mmapConvert -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/mmapConvert/minimap/mmapConvert.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/filterCorrectionOverlaps -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/filterCorrectionOverlaps/correction/filterCorrectionOverlaps.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/generateCorrectionLayouts -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/generateCorrectionLayouts/correction/generateCorrectionLayouts.o /<>/build/obj/bin/generateCorrectionLayouts/utgcns/stashContains.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/filterCorrectionLayouts -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/filterCorrectionLayouts/correction/filterCorrectionLayouts.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/falconsense -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/falconsense/correction/falconsense.o /<>/build/obj/bin/falconsense/utgcns/stashContains.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/errorEstimate -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/errorEstimate/correction/errorEstimate.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/splitHaplotype -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/splitHaplotype/haplotyping/splitHaplotype.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/trimReads -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/trimReads/overlapBasedTrimming/trimReads.o /<>/build/obj/bin/trimReads/overlapBasedTrimming/trimReads-bestEdge.o /<>/build/obj/bin/trimReads/overlapBasedTrimming/trimReads-largestCovered.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/splitReads -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/splitReads/overlapBasedTrimming/splitReads.o /<>/build/obj/bin/splitReads/overlapBasedTrimming/splitReads-workUnit.o /<>/build/obj/bin/splitReads/overlapBasedTrimming/splitReads-subReads.o /<>/build/obj/bin/splitReads/overlapBasedTrimming/splitReads-trimBad.o /<>/build/obj/bin/splitReads/overlapBasedTrimming/adjustNormal.o /<>/build/obj/bin/splitReads/overlapBasedTrimming/adjustFlipped.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/mergeRanges -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/mergeRanges/overlapBasedTrimming/mergeRanges.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/overlapAlign -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/overlapAlign/overlapAlign/overlapAlign.o /<>/build/obj/bin/overlapAlign/overlapAlign/computeOverlapAlignment.o /<>/build/obj/bin/overlapAlign/overlapAlign/trimRead.o /<>/build/obj/bin/overlapAlign/overlapAlign/clearRangeFile.o /<>/build/obj/bin/overlapAlign/overlapAlign/computeAlignments.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/findErrors -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors.o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Analyze_Alignment.o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Output.o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Prefix_Edit_Distance.o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Process_Olap.o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Read_Frags.o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/computeDiff.o /<>/build/obj/bin/findErrors/overlapErrorAdjustment/findErrors-Read_Olaps.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/fixErrors -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/fixErrors/overlapErrorAdjustment/fixErrors.o /<>/build/obj/bin/fixErrors/overlapErrorAdjustment/correctOverlaps-Correct_Frags.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/findErrors-Dump -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/findErrors-Dump/overlapErrorAdjustment/findErrors-Dump.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/correctOverlaps -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps.o /<>/build/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Correct_Frags.o /<>/build/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Read_Olaps.o /<>/build/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Redo_Olaps.o /<>/build/obj/bin/correctOverlaps/overlapErrorAdjustment/computeDiff.o /<>/build/obj/bin/correctOverlaps/overlapErrorAdjustment/correctOverlaps-Prefix_Edit_Distance.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/bogart -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/bogart/bogart/bogart.o /<>/build/obj/bin/bogart/bogart/AS_BAT_AssemblyGraph.o /<>/build/obj/bin/bogart/bogart/AS_BAT_BestOverlapGraph.o /<>/build/obj/bin/bogart/bogart/AS_BAT_ChunkGraph.o /<>/build/obj/bin/bogart/bogart/AS_BAT_DetectSpurs.o /<>/build/obj/bin/bogart/bogart/AS_BAT_Instrumentation.o /<>/build/obj/bin/bogart/bogart/AS_BAT_FindCircular.o /<>/build/obj/bin/bogart/bogart/AS_BAT_Logging.o /<>/build/obj/bin/bogart/bogart/AS_BAT_MarkRepeatReads.o /<>/build/obj/bin/bogart/bogart/AS_BAT_MergeOrphans.o /<>/build/obj/bin/bogart/bogart/AS_BAT_OptimizePositions.o /<>/build/obj/bin/bogart/bogart/AS_BAT_Outputs.o /<>/build/obj/bin/bogart/bogart/AS_BAT_OverlapCache.o /<>/build/obj/bin/bogart/bogart/AS_BAT_PlaceContains.o /<>/build/obj/bin/bogart/bogart/AS_BAT_PlaceReadUsingOverlaps.o /<>/build/obj/bin/bogart/bogart/AS_BAT_PopulateUnitig.o /<>/build/obj/bin/bogart/bogart/AS_BAT_PromoteToSingleton.o /<>/build/obj/bin/bogart/bogart/AS_BAT_ReadInfo.o /<>/build/obj/bin/bogart/bogart/AS_BAT_SetParentAndHang.o /<>/build/obj/bin/bogart/bogart/AS_BAT_SplitDiscontinuous.o /<>/build/obj/bin/bogart/bogart/AS_BAT_SplitTig_AtReadEnds.o /<>/build/obj/bin/bogart/bogart/AS_BAT_TigVector.o /<>/build/obj/bin/bogart/bogart/AS_BAT_Unitig.o /<>/build/obj/bin/bogart/bogart/AS_BAT_Unitig_AddRead.o /<>/build/obj/bin/bogart/bogart/AS_BAT_Unitig_PlaceReadUsingEdges.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/layoutReads -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/layoutReads/bogart/layoutReads.o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_Instrumentation.o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_Logging.o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_OptimizePositions.o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_Outputs.o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_OverlapCache.o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_PlaceContains.o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_PlaceReadUsingOverlaps.o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_ReadInfo.o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_SetParentAndHang.o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_TigVector.o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_Unitig.o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_Unitig_AddRead.o /<>/build/obj/bin/layoutReads/bogart/AS_BAT_Unitig_PlaceReadUsingEdges.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/utgcns -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/utgcns/utgcns/utgcns.o /<>/build/obj/bin/utgcns/utgcns/stashContains.o /<>/build/obj/bin/utgcns/utgcns/unitigConsensus.o -lcanu -lsnappy -lbacktrace g++ -o /<>/build/bin/alignGFA -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -pthread -fopenmp -lm -L/<>/build/lib /<>/build/obj/bin/alignGFA/gfa/alignGFA.o -lcanu -lsnappy -lbacktrace Success! canu installed in /<>/build/bin/canu make[2]: Leaving directory '/<>/src' find build \ -name OverlapMhap.pm \ -exec sed -i 's#\(\s*my \$javaPath = \).*#\1 "/usr/lib/jvm/java-8-openjdk-s390x/bin/java";#' {} + make[1]: Leaving directory '/<>' dh_auto_test -a -O--sourcedirectory=src/ create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src/ dh_prep -a -O--sourcedirectory=src/ dh_auto_install --destdir=debian/canu/ -a -O--sourcedirectory=src/ debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done rm -Rf debian/canu/build make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=src/ dh_installchangelogs -a -O--sourcedirectory=src/ dh_installman -a -O--sourcedirectory=src/ dh_installsystemduser -a -O--sourcedirectory=src/ dh_perl -a -O--sourcedirectory=src/ dh_link -a -O--sourcedirectory=src/ dh_strip_nondeterminism -a -O--sourcedirectory=src/ dh_compress -a -O--sourcedirectory=src/ dh_fixperms -a -O--sourcedirectory=src/ dh_missing -a -O--sourcedirectory=src/ dh_dwz -a -O--sourcedirectory=src/ dh_strip -a -O--sourcedirectory=src/ debugedit: debian/canu/usr/lib/canu/bin/splitReads: Unknown DWARF DW_FORM_0x1f21 5c0b1ee41a0d5ea2fd8130c912a73fa221c8d1e9 debugedit: debian/canu/usr/lib/canu/bin/prefixEditDistance-matchLimitGenerate: Unknown DWARF DW_FORM_0x1f21 4bcb6dafd348ee8f454fbd750bdc5b8af8a2cbba debugedit: debian/canu/usr/lib/canu/bin/filterCorrectionOverlaps: Unknown DWARF DW_FORM_0x1f20 68a9881d21524da6e03ea5fac85bbfdbab21b283 debugedit: debian/canu/usr/lib/canu/bin/bogart: Unknown DWARF DW_FORM_0x1f20 f1c3a96196d1bb32360b8f0c93b60a6106aaf35a debugedit: debian/canu/usr/lib/canu/bin/dumpBlob: Unknown DWARF DW_FORM_0x1f21 5f539ad7af814b75dd1ded55a8f4cdd45a86dfa3 debugedit: debian/canu/usr/lib/canu/bin/ovStoreDump: Unknown DWARF DW_FORM_0x1f20 36236c1f85eeb4e4520fa6ff1c206d5fbaff5ec4 debugedit: debian/canu/usr/lib/canu/bin/sqStoreCreate: Unknown DWARF DW_FORM_0x1f20 15db5cb49489270a4f14ef2f3f5ffe116c55a19e debugedit: debian/canu/usr/lib/canu/bin/ovStoreConfig: Unknown DWARF DW_FORM_0x1f21 639136119a0bf7b77b0d551378138b081587cd2e debugedit: debian/canu/usr/lib/canu/bin/splitHaplotype: Unknown DWARF DW_FORM_0x1f20 9453bd4960746c5e578a03cdbc49a91bb0624b1c debugedit: debian/canu/usr/lib/canu/bin/edalign: Unknown DWARF DW_FORM_0x1f20 3c05b565bedd45dc4b8474a82084b62345daeb68 debugedit: debian/canu/usr/lib/canu/bin/ovStoreBuild: Unknown DWARF DW_FORM_0x1f21 f3961e75e316fac78f520ad457b6f83d553fbe38 debugedit: debian/canu/usr/lib/canu/bin/mmapConvert: Unknown DWARF DW_FORM_0x1f20 b2956faa5be2de2c59a902178009a4076f0b807e debugedit: debian/canu/usr/lib/canu/bin/ovStoreSorter: Unknown DWARF DW_FORM_0x1f21 3e4325e49a27224d9fff611ff946ee9e880d1206 debugedit: debian/canu/usr/lib/canu/bin/falconsense: Unknown DWARF DW_FORM_0x1f20 224578f2d896d0ebcde7a69861c2e88b9f925d64 debugedit: debian/canu/usr/lib/canu/bin/fixErrors: Unknown DWARF DW_FORM_0x1f20 44d8d11bb5e4f0649bd8a66109680df4555dd1b7 debugedit: debian/canu/usr/lib/canu/bin/correctOverlaps: Unknown DWARF DW_FORM_0x1f21 ce557041b90c9c8ca762f639af6c47002377deff debugedit: debian/canu/usr/lib/canu/bin/overlapInCorePartition: Unknown DWARF DW_FORM_0x1f20 1bd884254f1cdba143ce33ea07af587713cff741 debugedit: debian/canu/usr/lib/canu/bin/alignGFA: Unknown DWARF DW_FORM_0x1f21 1fd0ea83b6aa6322a6a34db3d7bc83430bf67a62 debugedit: debian/canu/usr/lib/canu/bin/mergeRanges: Unknown DWARF DW_FORM_0x1f21 9ab667ee7e54bbe514fa7c84e03339ae02502b7a debugedit: debian/canu/usr/lib/canu/bin/overlapAlign: Unknown DWARF DW_FORM_0x1f20 d631b7daad8422683a040b7665b1c0de607bec55 debugedit: debian/canu/usr/lib/canu/bin/loadCorrectedReads: Unknown DWARF DW_FORM_0x1f21 fedfd27ee2c1ead98dbc1f079865800361dad988 debugedit: debian/canu/usr/lib/canu/bin/meryl: Unknown DWARF DW_FORM_0x1f20 749764347913a7cbce66de1dd9c106f1ba5b8154 debugedit: debian/canu/usr/lib/canu/bin/mhapConvert: Unknown DWARF DW_FORM_0x1f20 e2365b991942aeb19ccabe6fcc052bd6f7209d11 debugedit: debian/canu/usr/lib/canu/bin/loadErates: Unknown DWARF DW_FORM_0x1f21 8d97fc90e310db8ae8d3a5991f0ef1e4b5a75401 debugedit: debian/canu/usr/lib/canu/bin/overlapConvert: Unknown DWARF DW_FORM_0x1f20 aa8b3097e97f98520a9d5e0a7528687f2e2582e1 debugedit: debian/canu/usr/lib/canu/bin/overlapInCore: Unknown DWARF DW_FORM_0x1f20 06d02fbf85caf8e8c37ea063cc97a7e66ffed67c debugedit: debian/canu/usr/lib/canu/bin/sqStoreDumpMetaData: Unknown DWARF DW_FORM_0x1f20 939e50e59b07abcaf996c2b025bf651376ef1829 debugedit: debian/canu/usr/lib/canu/bin/tgTigDisplay: Unknown DWARF DW_FORM_0x1f20 9691fa4ca1be169b7c49fe72a47916c225e0402e debugedit: debian/canu/usr/lib/canu/bin/findErrors-Dump: Unknown DWARF DW_FORM_0x1f21 de7130227155aabc5327d71f0d89b4cb6322d0cf debugedit: debian/canu/usr/lib/canu/bin/ovStoreStats: Unknown DWARF DW_FORM_0x1f21 b7dc0dfb733d2bd42afb06cd060256218ee8053d debugedit: debian/canu/usr/lib/canu/bin/findErrors: Unknown DWARF DW_FORM_0x1f21 86d274de0d6969488f93c9c32b1017700aac4cb3 debugedit: debian/canu/usr/lib/canu/bin/ovStoreBucketizer: Unknown DWARF DW_FORM_0x1f20 81a990a953797b9ac4543c628ea04cca743c371a debugedit: debian/canu/usr/lib/canu/bin/layoutReads: Unknown DWARF DW_FORM_0x1f21 b35e835bb4bb6cea064436b741495cc4683fee93 debugedit: debian/canu/usr/lib/canu/bin/trimReads: Unknown DWARF DW_FORM_0x1f21 36cbca847ae55f96964b39e83690b2eb5265b372 debugedit: debian/canu/usr/lib/canu/bin/loadTrimmedReads: Unknown DWARF DW_FORM_0x1f20 5e1960346c5b2060193c818d037bb27093fb32f4 debugedit: debian/canu/usr/lib/canu/bin/utgcns: Unknown DWARF DW_FORM_0x1f20 dc13283ec22d74816d13e9877945ec69d6ae4be0 debugedit: debian/canu/usr/lib/canu/bin/overlapPair: Unknown DWARF DW_FORM_0x1f20 13e9e31f694dc845f66e3613bd4bb6430f8fcda8 debugedit: debian/canu/usr/lib/canu/bin/tgStoreLoad: Unknown DWARF DW_FORM_0x1f21 5405f9d4d42444bd55a7072ce31ff4a75da0cc18 debugedit: debian/canu/usr/lib/canu/bin/tgStoreCompress: Unknown DWARF DW_FORM_0x1f20 10e6a4b09e2fffd55c70311623be9de548d41c28 debugedit: debian/canu/usr/lib/canu/bin/tgStoreDump: Unknown DWARF DW_FORM_0x1f20 138b6000871f2d3fa91b77e704555ff2036c7344 debugedit: debian/canu/usr/lib/canu/bin/errorEstimate: Unknown DWARF DW_FORM_0x1f20 0458a0f9553f83c749ac187d2956e4d95e14fe45 debugedit: debian/canu/usr/lib/canu/bin/ovStoreIndexer: Unknown DWARF DW_FORM_0x1f21 5c4713fd517d244d99c5e3cfa7ff80c714fed81f debugedit: debian/canu/usr/lib/canu/bin/overlapImport: Unknown DWARF DW_FORM_0x1f21 ed853fa78dbe7296beffef6ba7a9d2570aa8c94f debugedit: debian/canu/usr/lib/canu/bin/filterCorrectionLayouts: Unknown DWARF DW_FORM_0x1f20 a1c4a59da1a6cd63875952742a5b96aa0a9dc4c1 debugedit: debian/canu/usr/lib/canu/bin/sqStoreDumpFASTQ: Unknown DWARF DW_FORM_0x1f20 80abffbeb5b749654e918a9f4dcfea319cda0b07 debugedit: debian/canu/usr/lib/canu/bin/overlapCheck: Unknown DWARF DW_FORM_0x1f20 d07a2d10a5b47381e2610620e6c50e78996f4f94 debugedit: debian/canu/usr/lib/canu/bin/generateCorrectionLayouts: Unknown DWARF DW_FORM_0x1f20 561f1bc3484789454b2365952aef8fc8556de67c dh_makeshlibs -a -O--sourcedirectory=src/ dh_shlibdeps -a -O--sourcedirectory=src/ dh_installdeb -a -O--sourcedirectory=src/ dh_gencontrol -a -O--sourcedirectory=src/ dh_md5sums -a -O--sourcedirectory=src/ dh_builddeb -a -O--sourcedirectory=src/ INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing canu (in debian/canu); do_strip: , oemstrip: pkgstriptranslations: processing canu-dbgsym (in debian/.debhelper/canu/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/canu/dbgsym-root/DEBIAN/control, package canu-dbgsym, directory debian/.debhelper/canu/dbgsym-root dpkg-deb: building package 'canu-dbgsym' in 'debian/.debhelper/scratch-space/build-canu/canu-dbgsym_2.2+dfsg-5_s390x.deb'. pkgstripfiles: processing control file: debian/canu/DEBIAN/control, package canu, directory debian/canu pkgstripfiles: Running PNG optimization (using 4 cpus) for package canu ... pkgstripfiles: No PNG files. dpkg-deb: building package 'canu' in '../canu_2.2+dfsg-5_s390x.deb'. Renaming canu-dbgsym_2.2+dfsg-5_s390x.deb to canu-dbgsym_2.2+dfsg-5_s390x.ddeb dpkg-genbuildinfo --build=any -O../canu_2.2+dfsg-5_s390x.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../canu_2.2+dfsg-5_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-10-30T10:17:34Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ canu_2.2+dfsg-5_s390x.changes: ------------------------------ Format: 1.8 Date: Fri, 20 Oct 2023 16:51:22 +0200 Source: canu Binary: canu Built-For-Profiles: noudeb Architecture: s390x Version: 2.2+dfsg-5 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: canu - single molecule sequence assembler for genomes Changes: canu (2.2+dfsg-5) unstable; urgency=medium . * d/tests/run-unit-test: preserve more logs Checksums-Sha1: 8513af8bb0f3a32c326b1ddf04c13bd7ecd4bafb 6641886 canu-dbgsym_2.2+dfsg-5_s390x.ddeb 5b2031b9ac41dda389b6ea2aabf59071a526795a 7273 canu_2.2+dfsg-5_s390x.buildinfo 5ac70ea0f3b3aa64f85fcefda392e08d8d08d63c 1444828 canu_2.2+dfsg-5_s390x.deb Checksums-Sha256: aa8b9945f04f622eb7cac7769318b2900a60a57d890ab7ce9c37c737b0b8d16b 6641886 canu-dbgsym_2.2+dfsg-5_s390x.ddeb 6e7b1704d6732c47a04f767e424e2a0e02c2239a5e3eff3fefeef5690e741672 7273 canu_2.2+dfsg-5_s390x.buildinfo f10de6b3d1f2fc1738819ff4c6c5fc797c9112d004c22e4715321f2f97141aab 1444828 canu_2.2+dfsg-5_s390x.deb Files: c298c63cf33ccc0425e41a51ba51b997 6641886 debug optional canu-dbgsym_2.2+dfsg-5_s390x.ddeb 0ff6f3f16950fabd968654a31dd4429e 7273 science optional canu_2.2+dfsg-5_s390x.buildinfo 96c6a5469a7270207963e31ad86d02a2 1444828 science optional canu_2.2+dfsg-5_s390x.deb /<>/canu_2.2+dfsg-5_s390x.changes.new could not be renamed to /<>/canu_2.2+dfsg-5_s390x.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: canu Binary: canu canu-dbgsym Architecture: s390x Version: 2.2+dfsg-5 Checksums-Md5: c298c63cf33ccc0425e41a51ba51b997 6641886 canu-dbgsym_2.2+dfsg-5_s390x.ddeb 96c6a5469a7270207963e31ad86d02a2 1444828 canu_2.2+dfsg-5_s390x.deb Checksums-Sha1: 8513af8bb0f3a32c326b1ddf04c13bd7ecd4bafb 6641886 canu-dbgsym_2.2+dfsg-5_s390x.ddeb 5ac70ea0f3b3aa64f85fcefda392e08d8d08d63c 1444828 canu_2.2+dfsg-5_s390x.deb Checksums-Sha256: aa8b9945f04f622eb7cac7769318b2900a60a57d890ab7ce9c37c737b0b8d16b 6641886 canu-dbgsym_2.2+dfsg-5_s390x.ddeb f10de6b3d1f2fc1738819ff4c6c5fc797c9112d004c22e4715321f2f97141aab 1444828 canu_2.2+dfsg-5_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Mon, 30 Oct 2023 10:17:34 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-13build1), autotools-dev (= 20220109.1), base-files (= 13ubuntu4), base-passwd (= 3.6.2), bash (= 5.2.15-2ubuntu1), binfmt-support (= 2.2.2-3), binutils (= 2.41-5ubuntu1), binutils-common (= 2.41-5ubuntu1), binutils-s390x-linux-gnu (= 2.41-5ubuntu1), bsdextrautils (= 2.39.1-4ubuntu2), bsdutils (= 1:2.39.1-4ubuntu2), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), ca-certificates (= 20230311ubuntu1), ca-certificates-java (= 20230710), coreutils (= 9.1-1ubuntu2), cpp (= 4:13.2.0-1ubuntu1), cpp-13 (= 13.2.0-6ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.7ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), default-jre-headless (= 2:1.17-75), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.0ubuntu1), dpkg-dev (= 1.22.0ubuntu1), dwz (= 0.15-1), fastjar (= 2:0.98-7), file (= 1:5.45-2), findutils (= 4.9.0-5), fontconfig-config (= 2.14.2-4ubuntu1), fonts-noto-core (= 20201225-2), fonts-noto-mono (= 20201225-2), g++ (= 4:13.2.0-1ubuntu1), g++-13 (= 13.2.0-6ubuntu1), gcc (= 4:13.2.0-1ubuntu1), gcc-13 (= 13.2.0-6ubuntu1), gcc-13-base (= 13.2.0-6ubuntu1), gettext (= 0.21-13build1), gettext-base (= 0.21-13build1), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.65.2ubuntu1), intltool-debian (= 0.35.0+20060710.6), jaligner (= 1.0+dfsg-11), jarwrapper (= 0.79), java-common (= 0.75), libacl1 (= 2.3.1-3), libapache-pom-java (= 29-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-6ubuntu1), libasound2 (= 1.2.10-1), libasound2-data (= 1.2.10-1), libatinject-jsr330-api-java (= 1.0+ds1-5), libatomic1 (= 13.2.0-6ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.1-1), libaudit1 (= 1:3.1.1-1), libavahi-client3 (= 0.8-10ubuntu1), libavahi-common-data (= 0.8-10ubuntu1), libavahi-common3 (= 0.8-10ubuntu1), libbinutils (= 2.41-5ubuntu1), libblkid1 (= 2.39.1-4ubuntu2), libboost-dev (= 1.74.0.3ubuntu7), libboost1.74-dev (= 1.74.0+ds1-23ubuntu1), libbrotli1 (= 1.0.9-2build8), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcap-ng0 (= 0.8.3-1build2), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-6ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcommons-compress-java (= 1.24.0-1), libcommons-parent-java (= 56-1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41-5ubuntu1), libctf0 (= 2.41-5ubuntu1), libcups2 (= 2.4.6-0ubuntu3), libdb5.3 (= 5.3.28+dfsg2-2), libdbus-1-3 (= 1.14.10-1ubuntu1), libdebconfclient0 (= 0.270ubuntu1), libdebhelper-perl (= 13.11.7ubuntu1), libdpkg-perl (= 1.22.0ubuntu1), libdw1 (= 0.189-4), libelf1 (= 0.189-4), liberror-prone-java (= 2.18.0-1), libexpat1 (= 2.5.0-2), libfastutil-java (= 8.5.12+dfsg-1), libffi8 (= 3.4.4-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfilesys-df-perl (= 0.92-7build1), libfontconfig1 (= 2.14.2-4ubuntu1), libfreetype6 (= 2.13.2+dfsg-1), libgcc-13-dev (= 13.2.0-6ubuntu1), libgcc-s1 (= 13.2.0-6ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libglib2.0-0 (= 2.78.1-1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.1-4ubuntu3), libgomp1 (= 13.2.0-6ubuntu1), libgpg-error0 (= 1.47-2), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.20.1-3ubuntu1), libguava-java (= 32.0.1-1), libharfbuzz0b (= 8.0.1-1), libhogweed6 (= 3.9.1-2), libicu72 (= 72.1-3ubuntu3), libidn2-0 (= 2.3.4-1build1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-6ubuntu1), libjansson4 (= 2.14-2), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libjsr305-java (= 0.1~+svn49-11), libk5crypto3 (= 1.20.1-3ubuntu1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-3ubuntu1), libkrb5support0 (= 1.20.1-3ubuntu1), liblcms2-2 (= 2.14-2), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.4-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmeryl-dev (= 0~20150903+r2013-8build3), libmount1 (= 2.39.1-4ubuntu2), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libnettle8 (= 3.9.1-2), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libnspr4 (= 2:4.35-1.1), libnss3 (= 2:3.94-1), libp11-kit0 (= 0.25.0-4ubuntu1), libpam-modules (= 1.5.2-6ubuntu1), libpam-modules-bin (= 1.5.2-6ubuntu1), libpam-runtime (= 1.5.2-6ubuntu1), libpam0g (= 1.5.2-6ubuntu1), libpcre2-8-0 (= 10.42-4), libpcsclite1 (= 2.0.0-1), libperl5.36 (= 5.36.0-9ubuntu1), libpipeline1 (= 1.5.7-1), libpng16-16 (= 1.6.40-2), libseccomp2 (= 2.5.4-1ubuntu3), libselinux1 (= 3.5-1), libsframe1 (= 2.41-5ubuntu1), libsmartcols1 (= 2.39.1-4ubuntu2), libsnappy-dev (= 1.1.10-1), libsnappy1v5 (= 1.1.10-1), libsqlite3-0 (= 3.43.2-1), libssl3 (= 3.0.10-1ubuntu2.1), libssw-java (= 1.1-14), libstdc++-13-dev (= 13.2.0-6ubuntu1), libstdc++6 (= 13.2.0-6ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 253.5-1ubuntu7), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20231016-1), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-7), libubsan1 (= 13.2.0-6ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 253.5-1ubuntu7), libunistring5 (= 1.1-2), libuuid1 (= 2.39.1-4ubuntu2), libxml2 (= 2.9.14+dfsg-1.3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.5.0-9.9), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 43), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20230808-1), mhap (= 2.1.3+dfsg-3), ncurses-base (= 6.4+20231016-1), ncurses-bin (= 6.4+20231016-1), openjdk-17-jre-headless (= 17.0.9+9-1), openssl (= 3.0.10-1ubuntu2.1), patch (= 2.7.6-7build2), perl (= 5.36.0-9ubuntu1), perl-base (= 5.36.0-9ubuntu1), perl-modules-5.36 (= 5.36.0-9ubuntu1), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.07-1ubuntu1), tar (= 1.34+dfsg-1.2ubuntu1), util-linux (= 2.39.1-4ubuntu2), xz-utils (= 5.4.4-0.1), zlib1g (= 1:1.2.13.dfsg-1ubuntu5) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1697813482" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ canu_2.2+dfsg-5_s390x.deb ------------------------- new Debian package, version 2.0. size 1444828 bytes: control archive=3022 bytes. 962 bytes, 22 lines control 5698 bytes, 82 lines md5sums Package: canu Version: 2.2+dfsg-5 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 9132 Depends: libc6 (>= 2.38), libgcc-s1 (>= 4.2), libgomp1 (>= 6), libsnappy1v5 (>= 1.1.10), libstdc++6 (>= 11), perl:any, libfilesys-df-perl, mhap, gnuplot-nox | gnuplot Suggests: nanopolish Section: science Priority: optional Homepage: https://canu.readthedocs.org/en/latest/ Description: single molecule sequence assembler for genomes Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION). . Canu is a hierarchical assembly pipeline which runs in four steps: . * Detect overlaps in high-noise sequences using MHAP * Generate corrected sequence consensus * Trim corrected sequences * Assemble trimmed corrected sequences drwxr-xr-x root/root 0 2023-10-20 14:51 ./ drwxr-xr-x root/root 0 2023-10-20 14:51 ./usr/ drwxr-xr-x root/root 0 2023-10-20 14:51 ./usr/bin/ -rwxr-xr-x root/root 109 2023-08-18 16:12 ./usr/bin/canu drwxr-xr-x root/root 0 2023-10-20 14:51 ./usr/lib/ drwxr-xr-x root/root 0 2023-10-20 14:51 ./usr/lib/canu/ drwxr-xr-x root/root 0 2023-10-20 14:51 ./usr/lib/canu/bin/ -rwxr-xr-x root/root 157960 2023-10-20 14:51 ./usr/lib/canu/bin/alignGFA -rwxr-xr-x root/root 395528 2023-10-20 14:51 ./usr/lib/canu/bin/bogart -rwxr-xr-x root/root 40570 2023-10-20 14:51 ./usr/lib/canu/bin/canu -rwxr-xr-x root/root 10839 2023-10-20 14:51 ./usr/lib/canu/bin/canu-time -rw-r--r-- root/root 83 2023-10-20 14:51 ./usr/lib/canu/bin/canu.defaults -rwxr-xr-x root/root 174336 2023-10-20 14:51 ./usr/lib/canu/bin/correctOverlaps -rwxr-xr-x root/root 13531 2023-10-20 14:51 ./usr/lib/canu/bin/draw-tig -rwxr-xr-x root/root 92408 2023-10-20 14:51 ./usr/lib/canu/bin/dumpBlob -rwxr-xr-x root/root 133376 2023-10-20 14:51 ./usr/lib/canu/bin/edalign -rwxr-xr-x root/root 100600 2023-10-20 14:51 ./usr/lib/canu/bin/errorEstimate -rwxr-xr-x root/root 211208 2023-10-20 14:51 ./usr/lib/canu/bin/falconsense -rwxr-xr-x root/root 137480 2023-10-20 14:51 ./usr/lib/canu/bin/filterCorrectionLayouts -rwxr-xr-x root/root 145664 2023-10-20 14:51 ./usr/lib/canu/bin/filterCorrectionOverlaps -rwxr-xr-x root/root 182528 2023-10-20 14:51 ./usr/lib/canu/bin/findErrors -rwxr-xr-x root/root 92512 2023-10-20 14:51 ./usr/lib/canu/bin/findErrors-Dump -rwxr-xr-x root/root 137472 2023-10-20 14:51 ./usr/lib/canu/bin/fixErrors -rwxr-xr-x root/root 157960 2023-10-20 14:51 ./usr/lib/canu/bin/generateCorrectionLayouts -rwxr-xr-x root/root 219400 2023-10-20 14:51 ./usr/lib/canu/bin/layoutReads -rwxr-xr-x root/root 153864 2023-10-20 14:51 ./usr/lib/canu/bin/loadCorrectedReads -rwxr-xr-x root/root 108800 2023-10-20 14:51 ./usr/lib/canu/bin/loadErates -rwxr-xr-x root/root 137472 2023-10-20 14:51 ./usr/lib/canu/bin/loadTrimmedReads -rwxr-xr-x root/root 121088 2023-10-20 14:51 ./usr/lib/canu/bin/mergeRanges -rwxr-xr-x root/root 268552 2023-10-20 14:51 ./usr/lib/canu/bin/meryl -rwxr-xr-x root/root 129280 2023-10-20 14:51 ./usr/lib/canu/bin/mhapConvert -rwxr-xr-x root/root 129280 2023-10-20 14:51 ./usr/lib/canu/bin/mmapConvert -rwxr-xr-x root/root 137472 2023-10-20 14:51 ./usr/lib/canu/bin/ovStoreBucketizer -rwxr-xr-x root/root 153856 2023-10-20 14:51 ./usr/lib/canu/bin/ovStoreBuild -rwxr-xr-x root/root 133376 2023-10-20 14:51 ./usr/lib/canu/bin/ovStoreConfig -rwxr-xr-x root/root 198920 2023-10-20 14:51 ./usr/lib/canu/bin/ovStoreDump -rwxr-xr-x root/root 145664 2023-10-20 14:51 ./usr/lib/canu/bin/ovStoreIndexer -rwxr-xr-x root/root 141568 2023-10-20 14:51 ./usr/lib/canu/bin/ovStoreSorter -rwxr-xr-x root/root 162048 2023-10-20 14:51 ./usr/lib/canu/bin/ovStoreStats -rwxr-xr-x root/root 227584 2023-10-20 14:51 ./usr/lib/canu/bin/overlapAlign -rwxr-xr-x root/root 203008 2023-10-20 14:51 ./usr/lib/canu/bin/overlapCheck -rwxr-xr-x root/root 129280 2023-10-20 14:51 ./usr/lib/canu/bin/overlapConvert -rwxr-xr-x root/root 141568 2023-10-20 14:51 ./usr/lib/canu/bin/overlapImport -rwxr-xr-x root/root 186672 2023-10-20 14:51 ./usr/lib/canu/bin/overlapInCore -rwxr-xr-x root/root 125184 2023-10-20 14:51 ./usr/lib/canu/bin/overlapInCorePartition -rwxr-xr-x root/root 186624 2023-10-20 14:51 ./usr/lib/canu/bin/overlapPair -rwxr-xr-x root/root 14504 2023-10-20 14:51 ./usr/lib/canu/bin/prefixEditDistance-matchLimitGenerate -rwxr-xr-x root/root 194816 2023-10-20 14:51 ./usr/lib/canu/bin/splitHaplotype -rwxr-xr-x root/root 166184 2023-10-20 14:51 ./usr/lib/canu/bin/splitReads -rwxr-xr-x root/root 157952 2023-10-20 14:51 ./usr/lib/canu/bin/sqStoreCreate -rwxr-xr-x root/root 137472 2023-10-20 14:51 ./usr/lib/canu/bin/sqStoreDumpFASTQ -rwxr-xr-x root/root 141568 2023-10-20 14:51 ./usr/lib/canu/bin/sqStoreDumpMetaData -rwxr-xr-x root/root 100608 2023-10-20 14:51 ./usr/lib/canu/bin/tgStoreCompress -rwxr-xr-x root/root 194824 2023-10-20 14:51 ./usr/lib/canu/bin/tgStoreDump -rwxr-xr-x root/root 141576 2023-10-20 14:51 ./usr/lib/canu/bin/tgStoreLoad -rwxr-xr-x root/root 133376 2023-10-20 14:51 ./usr/lib/canu/bin/tgTigDisplay -rwxr-xr-x root/root 157952 2023-10-20 14:51 ./usr/lib/canu/bin/trimReads -rwxr-xr-x root/root 313608 2023-10-20 14:51 ./usr/lib/canu/bin/utgcns drwxr-xr-x root/root 0 2023-10-20 14:51 ./usr/lib/canu/lib/ -rw-r--r-- root/root 1147652 2023-10-20 14:51 ./usr/lib/canu/lib/libcanu.a drwxr-xr-x root/root 0 2023-10-20 14:51 ./usr/lib/canu/lib/site_perl/ drwxr-xr-x root/root 0 2023-10-20 14:51 ./usr/lib/canu/lib/site_perl/canu/ -rw-r--r-- root/root 40958 2021-08-26 19:59 ./usr/lib/canu/lib/site_perl/canu/Configure.pm -rw-r--r-- root/root 15829 2021-08-26 19:59 ./usr/lib/canu/lib/site_perl/canu/Consensus.pm -rw-r--r-- root/root 25185 2021-08-26 19:59 ./usr/lib/canu/lib/site_perl/canu/CorrectReads.pm -rw-r--r-- root/root 71690 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/Defaults.pm -rw-r--r-- root/root 54133 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/Execution.pm -rw-r--r-- root/root 2106 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/Grid.pm -rw-r--r-- root/root 37336 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/Grid_Cloud.pm -rw-r--r-- root/root 6634 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/Grid_DNANexus.pm -rw-r--r-- root/root 6062 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/Grid_LSF.pm -rw-r--r-- root/root 4615 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/Grid_Local.pm -rw-r--r-- root/root 6938 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/Grid_PBSTorque.pm -rw-r--r-- root/root 13752 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/Grid_SGE.pm -rw-r--r-- root/root 5352 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/Grid_Slurm.pm -rw-r--r-- root/root 41392 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/HaplotypeReads.pm -rw-r--r-- root/root 30821 2023-10-20 14:51 ./usr/lib/canu/lib/site_perl/canu/Meryl.pm -rw-r--r-- root/root 3530 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/Output.pm -rw-r--r-- root/root 8490 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/OverlapBasedTrimming.pm -rw-r--r-- root/root 25263 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/OverlapErrorAdjustment.pm -rw-r--r-- root/root 15716 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/OverlapInCore.pm -rw-r--r-- root/root 24115 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/OverlapMMap.pm -rw-r--r-- root/root 31658 2023-10-20 14:51 ./usr/lib/canu/lib/site_perl/canu/OverlapMhap.pm -rw-r--r-- root/root 33456 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/OverlapStore.pm -rw-r--r-- root/root 5855 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/Report.pm -rw-r--r-- root/root 17041 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/SequenceStore.pm -rw-r--r-- root/root 12543 2021-08-04 00:21 ./usr/lib/canu/lib/site_perl/canu/Unitig.pm drwxr-xr-x root/root 0 2023-10-20 14:51 ./usr/share/ drwxr-xr-x root/root 0 2023-10-20 14:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-10-20 14:51 ./usr/share/doc/canu/ -rw-r--r-- root/root 2932 2021-08-04 00:21 ./usr/share/doc/canu/README.md -rw-r--r-- root/root 1343 2023-10-20 14:51 ./usr/share/doc/canu/changelog.Debian.gz -rw-r--r-- root/root 9586 2023-09-29 14:18 ./usr/share/doc/canu/copyright drwxr-xr-x root/root 0 2023-10-20 14:51 ./usr/share/man/ drwxr-xr-x root/root 0 2023-10-20 14:51 ./usr/share/man/man1/ -rw-r--r-- root/root 325 2023-10-20 14:51 ./usr/share/man/man1/canu.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: 226796 Build-Time: 131 Distribution: noble-proposed Host Architecture: s390x Install-Time: 44 Job: canu_2.2+dfsg-5.dsc Machine Architecture: s390x Package: canu Package-Time: 176 Source-Version: 2.2+dfsg-5 Space: 226796 Status: successful Version: 2.2+dfsg-5 -------------------------------------------------------------------------------- Finished at 2023-10-30T10:17:34Z Build needed 00:02:56, 226796k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=s390x PACKAGEBUILD-26913868 Scanning for processes to kill in build PACKAGEBUILD-26913868