https://launchpad.net/ubuntu/+source/busco/5.5.0-2/+build/27578387 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos03-arm64-008 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 aarch64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 19 Dec 23:15:58 ntpdate[1865]: adjust time server 10.211.37.1 offset -0.000851 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27578387 --image-type chroot /home/buildd/filecache-default/0aaa0d191106d33e51979a9c6a062e50b7f5b3b2 Creating target for build PACKAGEBUILD-27578387 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27578387 Starting target for build PACKAGEBUILD-27578387 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27578387 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27578387 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27578387 Updating target for build PACKAGEBUILD-27578387 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [240 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 Packages [1394 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe arm64 Packages [14.9 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6040 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [132 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [47.3 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [440 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [190 kB] Fetched 24.2 MB in 4s (6823 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-aarch64-linux-gnu binutils-common bsdextrautils bsdutils coreutils cpp cpp-13 debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep init init-system-helpers krb5-locales libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps readline-common systemd systemd-dev systemd-sysv sysvinit-utils tar ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 134 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 6875 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.38-3ubuntu1 [1573 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.38-3ubuntu1 [19.4 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-common all 1.3.4+ds-1 [7920 B] Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1 [201 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libgssapi-krb5-2 arm64 1.20.1-5build1 [139 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5-3 arm64 1.20.1-5build1 [347 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libk5crypto3 arm64 1.20.1-5build1 [85.5 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libkrb5support0 arm64 1.20.1-5build1 [33.5 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libssl3 arm64 3.0.10-1ubuntu3 [1752 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc3 arm64 1.3.4+ds-1 [82.6 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl2 arm64 1.3.0-3 [40.9 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 linux-libc-dev arm64 6.6.0-14.14 [1554 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 13.2.0-9ubuntu1 [49.5 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libgprofng0 arm64 2.41.50.20231214-1ubuntu1 [766 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libctf0 arm64 2.41.50.20231214-1ubuntu1 [80.0 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libctf-nobfd0 arm64 2.41.50.20231214-1ubuntu1 [83.0 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 binutils-aarch64-linux-gnu arm64 2.41.50.20231214-1ubuntu1 [3564 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libbinutils arm64 2.41.50.20231214-1ubuntu1 [684 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 binutils-common arm64 2.41.50.20231214-1ubuntu1 [258 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 binutils arm64 2.41.50.20231214-1ubuntu1 [7762 B] Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-base arm64 13.2.0-9ubuntu1 [45.2 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-s1 arm64 13.2.0-9ubuntu1 [46.6 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 13.2.0-9ubuntu1 [139 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 13.2.0-9ubuntu1 [27.9 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 13.2.0-9ubuntu1 [11.6 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 13.2.0-9ubuntu1 [2751 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 13.2.0-9ubuntu1 [1185 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 13.2.0-9ubuntu1 [2630 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 13.2.0-9ubuntu1 [1090 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 13.2.0-9ubuntu1 [1243 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-9ubuntu1 [10.9 MB] Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-9ubuntu1 [2317 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-9ubuntu1 [2464 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-9ubuntu1 [19.1 MB] Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-9ubuntu1 [9538 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++6 arm64 13.2.0-9ubuntu1 [732 kB] Get:38 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 zlib1g arm64 1:1.3.dfsg-3ubuntu1 [61.6 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libsframe1 arm64 2.41.50.20231214-1ubuntu1 [13.3 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libzstd1 arm64 1.5.5+dfsg2-2 [270 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libc6 arm64 2.38-3ubuntu1 [2740 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 base-files arm64 13ubuntu5 [73.8 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 debianutils arm64 5.14 [89.3 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 bash arm64 5.2.21-2ubuntu1 [777 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 bsdutils arm64 1:2.39.2-6ubuntu1 [96.9 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 coreutils arm64 9.4-2ubuntu1 [1378 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 diffutils arm64 1:3.10-1 [174 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma5 arm64 5.4.5-0.1 [125 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libapparmor1 arm64 4.0.0~alpha2-0ubuntu7 [48.7 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit-common all 1:3.1.2-1 [5512 B] Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libcap-ng0 arm64 0.8.3-3 [14.9 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libaudit1 arm64 1:3.1.2-1 [47.0 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libblkid1 arm64 2.39.2-6ubuntu1 [121 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libkmod2 arm64 30+20230601-2ubuntu1 [49.8 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-8-0 arm64 10.42-4ubuntu1 [211 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libselinux1 arm64 3.5-1build2 [78.4 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libmount1 arm64 2.39.2-6ubuntu1 [132 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libpam0g arm64 1.5.2-9.1ubuntu1 [65.2 kB] Get:59 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libseccomp2 arm64 2.5.4-2ubuntu1 [50.1 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-sysv arm64 255-1ubuntu1 [11.7 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd-dev all 255-1ubuntu1 [98.5 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 systemd arm64 255-1ubuntu1 [3415 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsystemd-shared arm64 255-1ubuntu1 [2009 kB] Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libargon2-1 arm64 0~20190702+dfsg-4 [20.5 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libuuid1 arm64 2.39.2-6ubuntu1 [34.3 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libcryptsetup12 arm64 2:2.6.1-5ubuntu1 [239 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libfdisk1 arm64 2.39.2-6ubuntu1 [141 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 mount arm64 2.39.2-6ubuntu1 [116 kB] Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libsystemd0 arm64 255-1ubuntu1 [419 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libudev1 arm64 255-1ubuntu1 [168 kB] Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxxhash0 arm64 0.8.2-2 [21.2 kB] Get:72 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libapt-pkg6.0 arm64 2.7.7 [893 kB] Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 tar arm64 1.34+dfsg-1.2ubuntu2 [285 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg arm64 1.22.1ubuntu5 [1385 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 grep arm64 3.11-3 [158 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 login arm64 1:4.13+dfsg1-3ubuntu1 [200 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 ncurses-bin arm64 6.4+20231209-1 [185 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libperl5.36 arm64 5.36.0-10ubuntu1 [4673 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 perl arm64 5.36.0-10ubuntu1 [235 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 perl-base arm64 5.36.0-10ubuntu1 [1721 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libdb5.3 arm64 5.3.28+dfsg2-4 [718 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm6 arm64 1.23-5 [33.8 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libgdbm-compat4 arm64 1.23-5 [6302 B] Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 util-linux arm64 2.39.2-6ubuntu1 [1113 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libdebconfclient0 arm64 0.271ubuntu1 [11.2 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 base-passwd arm64 3.6.3 [51.1 kB] Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libc-bin arm64 2.38-3ubuntu1 [590 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 ncurses-base all 6.4+20231209-1 [25.2 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 sysvinit-utils arm64 3.08-3ubuntu1 [33.3 kB] Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 apt arm64 2.7.7 [1331 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 apt-utils arm64 2.7.7 [205 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libunistring5 arm64 1.1-2 [528 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libidn2-0 arm64 2.3.4-1build1 [65.3 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libffi8 arm64 3.4.4-2 [22.2 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libp11-kit0 arm64 0.25.3-2ubuntu2 [274 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libgnutls30 arm64 3.8.1-4ubuntu6 [930 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules-bin arm64 1.5.2-9.1ubuntu1 [46.7 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-modules arm64 1.5.2-9.1ubuntu1 [283 kB] Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 init arm64 1.66ubuntu1 [6186 B] Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libsmartcols1 arm64 2.39.2-6ubuntu1 [62.9 kB] Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 uuid-runtime arm64 2.39.2-6ubuntu1 [32.3 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libgpg-error-l10n all 1.47-3build1 [8024 B] Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libgpg-error0 arm64 1.47-3build1 [69.9 kB] Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpam-runtime all 1.5.2-9.1ubuntu1 [41.5 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage-common all 3.5-1build1 [9982 B] Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libsepol2 arm64 3.5-2 [289 kB] Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libsemanage2 arm64 3.5-1build1 [90.0 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libncursesw6 arm64 6.4+20231209-1 [144 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libtinfo6 arm64 6.4+20231209-1 [103 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 passwd arm64 1:4.13+dfsg1-3ubuntu1 [837 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libproc2-0 arm64 2:4.0.4-2ubuntu1 [56.5 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 mawk arm64 1.3.4.20231126-1 [123 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 procps arm64 2:4.0.4-2ubuntu1 [706 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 krb5-locales all 1.20.1-5build1 [13.7 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 readline-common all 8.2-3 [56.2 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline8 arm64 8.2-3 [152 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsqlite3-0 arm64 3.44.2-1 [691 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 openssl arm64 3.0.10-1ubuntu3 [1168 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 bash-completion all 1:2.11-8 [180 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 bsdextrautils arm64 2.39.2-6ubuntu1 [71.4 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpng16-16 arm64 1.6.40-2 [183 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 xz-utils arm64 5.4.5-0.1 [268 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-2ubuntu1 [1108 B] Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-2ubuntu1 [5192 B] Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-2ubuntu1 [29.0 kB] Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 dpkg-dev all 1.22.1ubuntu5 [1147 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libdpkg-perl all 1.22.1ubuntu5 [286 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 lto-disabled-list all 44 [12.4 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libfakeroot arm64 1.32.2-1 [32.0 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 fakeroot arm64 1.32.2-1 [66.7 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 optipng arm64 0.7.7-3 [82.1 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 pinentry-curses arm64 1.2.1-3ubuntu1 [34.0 kB] Preconfiguring packages ... Fetched 105 MB in 6s (19.0 MB/s) (Reading database ... 13662 files and directories currently installed.) Preparing to unpack .../00-libnsl-dev_1.3.0-3_arm64.deb ... Unpacking libnsl-dev:arm64 (1.3.0-3) over (1.3.0-2build2) ... Preparing to unpack .../01-libc6-dev_2.38-3ubuntu1_arm64.deb ... Unpacking libc6-dev:arm64 (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../02-libc-dev-bin_2.38-3ubuntu1_arm64.deb ... Unpacking libc-dev-bin (2.38-3ubuntu1) over (2.38-1ubuntu6) ... Preparing to unpack .../03-libtirpc-common_1.3.4+ds-1_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../04-libtirpc-dev_1.3.4+ds-1_arm64.deb ... Unpacking libtirpc-dev:arm64 (1.3.4+ds-1) over (1.3.3+ds-1) ... Preparing to unpack .../05-libgssapi-krb5-2_1.20.1-5build1_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.20.1-5build1) over (1.20.1-3ubuntu1) ... Preparing to unpack .../06-libkrb5-3_1.20.1-5build1_arm64.deb ... 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Setting up gcc-13 (13.2.0-9ubuntu1) ... Setting up libdpkg-perl (1.22.1ubuntu5) ... Setting up libnsl2:arm64 (1.3.0-3) ... Setting up gcc (4:13.2.0-2ubuntu1) ... Setting up dpkg-dev (1.22.1ubuntu5) ... Setting up libnsl-dev:arm64 (1.3.0-3) ... Setting up libc6-dev:arm64 (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:arm64 (13.2.0-9ubuntu1) ... Setting up g++-13 (13.2.0-9ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.14) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27578387 arm64 noble-proposed -c chroot:build-PACKAGEBUILD-27578387 --arch=arm64 --dist=noble-proposed --nolog busco_5.5.0-2.dsc Initiating build PACKAGEBUILD-27578387 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 aarch64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos03-arm64-008.buildd +==============================================================================+ | busco 5.5.0-2 (arm64) Tue, 19 Dec 2023 23:16:33 +0000 | +==============================================================================+ Package: busco Version: 5.5.0-2 Source Version: 5.5.0-2 Distribution: noble-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27578387/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/busco-nMQswO/resolver-1HGxlz' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- busco_5.5.0-2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/busco-nMQswO/busco-5.5.0' with '<>' I: NOTICE: Log filtering will replace 'build/busco-nMQswO' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-biopython, python3-pandas, python3-setuptools, hmmer, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-biopython, python3-pandas, python3-setuptools, hmmer, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [424 B] Get:5 copy:/<>/apt_archive ./ Packages [494 B] Fetched 1875 B in 0s (91.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 gettext gettext-base groff-base hmmer intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libdebhelper-perl libdeflate0 libdivsufsort3 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu74 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libmagic-mgc libmagic1 libopenjp2-7 libpipeline1 libpixman-1-0 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libraqm0 libsharpyuv0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxrender1 m4 man-db media-types netbase po-debconf python3 python3-all python3-biopython python3-cairo python3-chardet python3-dateutil python3-distutils python3-freetype python3-lib2to3 python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-reportlab python3-rlpycairo python3-setuptools python3-six python3-tz python3.11 python3.11-minimal python3.12 python3.12-minimal sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make flit python3-build python3-installer python3-wheel fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gettext-doc libasprintf-dev libgettextpo-dev groff hmmer-doc low-memory-monitor liblcms2-utils libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv bwa clustalo clustalw dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib python3-psycopg2 python3-scipy raxml samtools t-coffee wise gfortran python3-dev python3-pytest python-pandas-doc python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel rl-renderpm python-setuptools-doc python3.11-venv python3.11-doc binfmt-support python3.12-venv python3.12-doc sgml-base-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl python-biopython-doc ncbi-blast+ python3-scipy python3-matplotlib python3-bottleneck python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib python3-lxml python3-tables python3-jinja2 python3-olefile The following NEW packages will be installed: autoconf automake autopoint autotools-dev debhelper debugedit dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono fonts-urw-base35 gettext gettext-base groff-base hmmer intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0 libcairo2 libdebhelper-perl libdeflate0 libdivsufsort3 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfontenc1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu74 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libmagic-mgc libmagic1 libopenjp2-7 libpipeline1 libpixman-1-0 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libpython3.12-minimal libpython3.12-stdlib libraqm0 libsharpyuv0 libsub-override-perl libtiff6 libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxrender1 m4 man-db media-types netbase po-debconf python3 python3-all python3-biopython python3-cairo python3-chardet python3-dateutil python3-distutils python3-freetype python3-lib2to3 python3-minimal python3-numpy python3-pandas python3-pandas-lib python3-pil python3-pkg-resources python3-reportlab python3-rlpycairo python3-setuptools python3-six python3-tz python3.11 python3.11-minimal python3.12 python3.12-minimal sbuild-build-depends-main-dummy sgml-base w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded. 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libxcb1 arm64 1.15-1 [47.6 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-data all 2:1.8.7-1 [115 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libx11-6 arm64 2:1.8.7-1 [645 kB] Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libxext6 arm64 2:1.3.4-1build1 [31.1 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 man-db arm64 2.12.0-1 [1224 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 m4 arm64 1.4.19-4 [240 kB] Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 autoconf all 2.71-3 [339 kB] Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 autotools-dev all 20220109.1 [44.9 kB] Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 automake all 1:1.16.5-1.3 [558 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 autopoint all 0.21-14 [422 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libdebhelper-perl all 13.11.8ubuntu1 [85.9 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libtool all 2.4.7-7 [166 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 dh-autoreconf all 20 [16.1 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libsub-override-perl all 0.10-1 [10.0 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [18.1 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 dh-strip-nondeterminism all 1.13.1-1 [5362 B] Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libdw1 arm64 0.190-1 [254 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 debugedit arm64 1:5.0-5 [45.9 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 dwz arm64 0.15-1 [110 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gettext arm64 0.21-14 [843 kB] Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 po-debconf all 1.0.21+nmu1 [233 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 debhelper all 13.11.8ubuntu1 [940 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 python3-lib2to3 all 3.11.5-1 [79.0 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 python3-distutils all 3.11.5-1 [131 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 python3-setuptools all 68.1.2-2 [396 kB] Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 dh-python all 6.20231204 [111 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libfontenc1 arm64 1:1.1.4-1build3 [14.1 kB] Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libbrotli1 arm64 1.1.0-2 [339 kB] Get:63 http://ftpmaster.internal/ubuntu 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libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.11.0-2build1 [2134 kB] Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 liblcms2-2 arm64 2.14-2 [159 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpython3.12-stdlib arm64 3.12.1-2 [2005 kB] Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libraqm0 arm64 0.10.1-1 [14.4 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.3 [14.0 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.3 [190 kB] Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-1ubuntu1 [189 kB] Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpdemux2 arm64 1.3.2-0.3 [12.1 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libwebpmux3 arm64 1.3.2-0.3 [25.0 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 python3.12 arm64 3.12.1-2 [638 kB] Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-all arm64 3.11.4-5ubuntu1 [910 B] Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 python3-numpy arm64 1:1.24.2-2 [4525 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 python3-chardet all 5.2.0+dfsg-1 [117 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libopenjp2-7 arm64 2.5.0-2 [170 kB] Get:101 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 python3-pil arm64 10.1.0-1 [476 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 python3-cairo arm64 1.25.1-1 [120 kB] Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 python3-freetype all 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1.5.3+dfsg-10 [2915 kB] Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 hmmer arm64 3.4+dfsg-2 [1107 kB] Preconfiguring packages ... Fetched 73.6 MB in 6s (13.3 MB/s) Selecting previously unselected package libpython3.11-minimal:arm64. (Reading database ... 13858 files and directories currently installed.) Preparing to unpack .../libpython3.11-minimal_3.11.7-2_arm64.deb ... Unpacking libpython3.11-minimal:arm64 (3.11.7-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.5.0-2_arm64.deb ... Unpacking libexpat1:arm64 (2.5.0-2) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../python3.11-minimal_3.11.7-2_arm64.deb ... Unpacking python3.11-minimal (3.11.7-2) ... Setting up libpython3.11-minimal:arm64 (3.11.7-2) ... Setting up libexpat1:arm64 (2.5.0-2) ... Setting up python3.11-minimal (3.11.7-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 14172 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.4-5ubuntu1_arm64.deb ... 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Setting up libblas3:arm64 (3.11.0-2build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libfreetype6:arm64 (2.13.2+dfsg-1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... Setting up libfribidi0:arm64 (1.0.13-3) ... Setting up libimagequant0:arm64 (2.18.0-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up autopoint (0.21-14) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... Setting up libgfortran5:arm64 (13.2.0-9ubuntu1) ... Setting up autoconf (2.71-3) ... Setting up libwebp7:arm64 (1.3.2-0.3) ... Setting up libicu74:arm64 (74.2-1ubuntu1) ... Setting up fonts-dejavu-extra (2.37-8) ... Setting up libuchardet0:arm64 (0.0.8-1) ... Setting up libopenjp2-7:arm64 (2.5.0-2) ... Setting up libsub-override-perl (0.10-1) ... 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Setting up gettext (0.21-14) ... Setting up libpython3.12-stdlib:arm64 (3.12.1-2) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:arm64 (1.15-1) ... Setting up fontconfig-config (2.14.2-6ubuntu1) ... Setting up libwebpdemux2:arm64 (1.3.2-0.3) ... Setting up libpython3.11-stdlib:arm64 (3.11.7-2) ... Setting up python3.12 (3.12.1-2) ... Setting up libxcb-shm0:arm64 (1.15-1) ... Setting up xfonts-utils (1:7.7+6build2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libraqm0:arm64 (0.10.1-1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libtiff6:arm64 (4.5.1+git230720-1ubuntu1) ... Setting up xml-core (0.19) ... Setting up hmmer (3.4+dfsg-2) ... Setting up debugedit (1:5.0-5) ... Setting up libx11-6:arm64 (2:1.8.7-1) ... Setting up libfontconfig1:arm64 (2.14.2-6ubuntu1) ... Setting up libpython3-stdlib:arm64 (3.11.4-5ubuntu1) ... Setting up python3.11 (3.11.7-2) ... Setting up libxrender1:arm64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:arm64 (2:1.3.4-1build1) ... Setting up python3 (3.11.4-5ubuntu1) ... Setting up fonts-urw-base35 (20200910-7) ... Setting up python3-freetype (2.4.0-1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libcairo2:arm64 (1.18.0-1) ... Setting up python3-tz (2023.3.post1-2) ... Setting up python3-six (1.16.0-4) ... Setting up python3-pil:arm64 (10.1.0-1) ... Setting up python3-dateutil (2.8.2-3) ... Setting up python3-lib2to3 (3.11.5-1) ... Setting up python3-pkg-resources (68.1.2-2) ... Setting up python3-distutils (3.11.5-1) ... python3.12: can't get files for byte-compilation Setting up python3-cairo:arm64 (1.25.1-1) ... Setting up python3-setuptools (68.1.2-2) ... Setting up python3-all (3.11.4-5ubuntu1) ... Setting up debhelper (13.11.8ubuntu1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-rlpycairo (0.3.0-3) ... Setting up python3-numpy (1:1.24.2-2) ... Setting up python3-reportlab (4.0.8-1) ... Setting up dh-python (6.20231204) ... Setting up python3-pandas-lib:arm64 (1.5.3+dfsg-10) ... Setting up python3-pandas (1.5.3+dfsg-10) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for systemd (255-1ubuntu1) ... Processing triggers for sgml-base (1.31) ... Setting up w3c-sgml-lib (1.3-3) ... Setting up python3-biopython (1.81+dfsg-2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:53:38 UTC 2023 arm64 (aarch64) Toolchain package versions: binutils_2.41.50.20231214-1ubuntu1 dpkg-dev_1.22.1ubuntu5 g++-13_13.2.0-9ubuntu1 gcc-13_13.2.0-9ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.7 apt-utils_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13ubuntu5 base-passwd_3.6.3 bash_5.2.21-2ubuntu1 bash-completion_1:2.11-8 binutils_2.41.50.20231214-1ubuntu1 binutils-aarch64-linux-gnu_2.41.50.20231214-1ubuntu1 binutils-common_2.41.50.20231214-1ubuntu1 bsdextrautils_2.39.2-6ubuntu1 bsdutils_1:2.39.2-6ubuntu1 build-essential_12.10ubuntu1 bzip2_1.0.8-5build1 ca-certificates_20230311ubuntu1 coreutils_9.4-2ubuntu1 cpp_4:13.2.0-2ubuntu1 cpp-13_13.2.0-9ubuntu1 dash_0.5.12-6ubuntu1 debconf_1.5.82 debconf-i18n_1.5.82 debhelper_13.11.8ubuntu1 debianutils_5.14 debugedit_1:5.0-5 dh-autoreconf_20 dh-python_6.20231204 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.1ubuntu5 dpkg-dev_1.22.1ubuntu5 dwz_0.15-1 e2fsprogs_1.47.0-2ubuntu1 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig-config_2.14.2-6ubuntu1 fonts-dejavu-core_2.37-8 fonts-dejavu-extra_2.37-8 fonts-dejavu-mono_2.37-8 fonts-urw-base35_20200910-7 g++_4:13.2.0-2ubuntu1 g++-13_13.2.0-9ubuntu1 gcc_4:13.2.0-2ubuntu1 gcc-13_13.2.0-9ubuntu1 gcc-13-base_13.2.0-9ubuntu1 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libcrypt1_1:4.4.36-2 libcryptsetup12_2:2.6.1-5ubuntu1 libctf-nobfd0_2.41.50.20231214-1ubuntu1 libctf0_2.41.50.20231214-1ubuntu1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271ubuntu1 libdebhelper-perl_13.11.8ubuntu1 libdeflate0_1.18-1 libdevmapper1.02.1_2:1.02.185-2ubuntu1 libdivsufsort3_2.0.1-5 libdpkg-perl_1.22.1ubuntu5 libdw1_0.190-1 libelf1_0.190-1 libexpat1_2.5.0-2 libext2fs2_1.47.0-2ubuntu1 libfakeroot_1.32.2-1 libfdisk1_2.39.2-6ubuntu1 libffi8_3.4.4-2 libfile-stripnondeterminism-perl_1.13.1-1 libfontconfig1_2.14.2-6ubuntu1 libfontenc1_1:1.1.4-1build3 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-13-dev_13.2.0-9ubuntu1 libgcc-s1_13.2.0-9ubuntu1 libgcrypt20_1.10.2-3ubuntu1 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgfortran5_13.2.0-9ubuntu1 libglib2.0-0_2.78.3-1 libgmp10_2:6.3.0+dfsg-2ubuntu4 libgnutls30_3.8.1-4ubuntu6 libgomp1_13.2.0-9ubuntu1 libgpg-error-l10n_1.47-3build1 libgpg-error0_1.47-3build1 libgpm2_1.20.7-10build1 libgprofng0_2.41.50.20231214-1ubuntu1 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ncurses-bin_6.4+20231209-1 netbase_6.4 openssl_3.0.10-1ubuntu3 optipng_0.7.7-3 passwd_1:4.13+dfsg1-3ubuntu1 patch_2.7.6-7build2 perl_5.36.0-10ubuntu1 perl-base_5.36.0-10ubuntu1 perl-modules-5.36_5.36.0-10ubuntu1 pinentry-curses_1.2.1-3ubuntu1 pkgbinarymangler_154 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:4.0.4-2ubuntu1 psmisc_23.6-1 python3_3.11.4-5ubuntu1 python3-all_3.11.4-5ubuntu1 python3-biopython_1.81+dfsg-2 python3-cairo_1.25.1-1 python3-chardet_5.2.0+dfsg-1 python3-dateutil_2.8.2-3 python3-distutils_3.11.5-1 python3-freetype_2.4.0-1 python3-lib2to3_3.11.5-1 python3-minimal_3.11.4-5ubuntu1 python3-numpy_1:1.24.2-2 python3-pandas_1.5.3+dfsg-10 python3-pandas-lib_1.5.3+dfsg-10 python3-pil_10.1.0-1 python3-pkg-resources_68.1.2-2 python3-reportlab_4.0.8-1 python3-rlpycairo_0.3.0-3 python3-setuptools_68.1.2-2 python3-six_1.16.0-4 python3-tz_2023.3.post1-2 python3.11_3.11.7-2 python3.11-minimal_3.11.7-2 python3.12_3.12.1-2 python3.12-minimal_3.12.1-2 readline-common_8.2-3 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 systemd_255-1ubuntu1 systemd-dev_255-1ubuntu1 systemd-sysv_255-1ubuntu1 sysvinit-utils_3.08-3ubuntu1 tar_1.34+dfsg-1.2ubuntu2 tzdata_2023c-9ubuntu1 ubuntu-keyring_2023.11.28.1 usrmerge_35ubuntu1 util-linux_2.39.2-6ubuntu1 uuid-runtime_2.39.2-6ubuntu1 w3c-sgml-lib_1.3-3 x11-common_1:7.7+23ubuntu2 xfonts-encodings_1:1.0.5-0ubuntu2 xfonts-utils_1:7.7+6build2 xml-core_0.19 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: busco Binary: busco Architecture: any Version: 5.5.0-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://gitlab.com/ezlab/busco Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/busco Vcs-Git: https://salsa.debian.org/med-team/busco.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, quilt Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all, python3-biopython , python3-pandas , python3-setuptools, hmmer Package-List: busco deb science optional arch=any Checksums-Sha1: 8aac706ba4a275f566c883782e66ff0275bc40a5 391508 busco_5.5.0.orig.tar.gz 363fc053225aa4af488180c16c553586ada3267b 8244 busco_5.5.0-2.debian.tar.xz Checksums-Sha256: 07ca32892ddd6016e5610c34f830cc8445dbcade3f7b460c3d898e27c9650cc7 391508 busco_5.5.0.orig.tar.gz ff383736d5b96c19055d591f90b4e75c4cdaa676d9d86679d09886d83d9288ef 8244 busco_5.5.0-2.debian.tar.xz Files: 0ffd737dff3397bc2c58780cd86abc84 391508 busco_5.5.0.orig.tar.gz 46a48b5ff128fd39a297cd87af87039d 8244 busco_5.5.0-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmWBxMYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFaqw/+IJ2CKG29jdpAJ12SRihCp3cEHYEkVxpV CKnZ/kv1QZfe0rjZcYipS8elyPJePQr7ucuTBntlOcBGFM2HOm5Y9ZOBrMEJPqSW LY4IBgHHI97y5q/sBqKFBV0qzzh5ixP9KFth2bwjuFy+ywdH8VE11gz/9u+Fp9DL lvth8fMr1tWzhVURFjOP+jEqs3AIgKXjm1X6jTjavXeRXYXCkeLzFXnmoRQAAQkP qOI74AvecfCLnRiTX6xOzyd4VjV7xzd4u0czlc/BE+9ENc6hU9Ffj88gtG1Wp3gf T0olqTMzOsw0brIvIk8WvrZ+0bhle2fcofGObiPvKhvGSc/gt9c9lNF/PcbIS0XP w7hnylqBCmvi1eClGrOePiLhOU/8qZt8kVtNUAzyvbSGsUplhexzTHbz0AWSHmF4 KNiX20QtlYxcbIZC+2G1EWcQYpGObxs7ljRBP4MgPJJRyY4ii8b9mHyQRXC/oU6n vgvGNVvIWximvl9UnOGec/pazAajjJcxMWn37wtFDZOhdqVP9pHt27ss2KYsrqwV 39FZzeSOTQdrh6gYFAQIOMTxKjcDGGrQ0dDzkzKnLWlUVPBmsWQqAM2vuvav4T5U 9Rf/O3DTcWHmSfhcsZQHxXrZX+hwUqjeQ/SyHkyhKQlQcmuuxTmpU/+Q2/RbhPeH C4pVCHwFKIk= =HC7N -----END PGP SIGNATURE----- gpgv: Signature made Tue Dec 19 16:28:54 2023 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./busco_5.5.0-2.dsc: no acceptable signature found dpkg-source: info: extracting busco in /<> dpkg-source: info: unpacking busco_5.5.0.orig.tar.gz dpkg-source: info: unpacking busco_5.5.0-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-and-disable-tests.patch dpkg-source: info: applying find-bbmap-instead-of-bbtools.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27578387 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27578387 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27578387 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package busco dpkg-buildpackage: info: source version 5.5.0-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:310: python3.12 setup.py clean 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it I: pybuild base:310: python3.11 setup.py clean 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.11' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary-arch dh binary-arch --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:310: python3.12 setup.py config I: pybuild base:310: python3.11 setup.py config dh_auto_build -a -O--buildsystem=pybuild I: pybuild base:310: /usr/bin/python3.12 setup.py build I: pybuild base:310: /usr/bin/python3 setup.py build debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test -- --test-custom --test-args '{interpreter} -m unittest tests/unittest_runner.py -v' I: pybuild base:310: cd /<>/.pybuild/cpython3_3.12/build; python3.12 -m unittest tests/unittest_runner.py -v /<>/.pybuild/cpython3_3.12/build/busco/busco_tools/miniprot.py:200: SyntaxWarning: invalid escape sequence '\*' self.ata_seq = re.sub("\*", "", sta_seq.upper()) /<>/.pybuild/cpython3_3.12/build/busco/BuscoPlacer.py:211: SyntaxWarning: invalid escape sequence '\[' "[^0-9][0-9]*:[0-9]*[^0-9]{0,1}[0-9]*[^0-9]{0,2}[0-9]*\[%s\]" test_cmdline_options_all_long (tests.unittests.run_BUSCO_unittests.TestParams.test_cmdline_options_all_long) ... ok test_cmdline_options_all_short (tests.unittests.run_BUSCO_unittests.TestParams.test_cmdline_options_all_short) ... ok test_cmdline_options_short_minimum (tests.unittests.run_BUSCO_unittests.TestParams.test_cmdline_options_short_minimum) ... ok test_command_line_cpu_type (tests.unittests.run_BUSCO_unittests.TestParams.test_command_line_cpu_type) ... ok test_command_line_evalue_type (tests.unittests.run_BUSCO_unittests.TestParams.test_command_line_evalue_type) ... ok test_command_line_limit_type (tests.unittests.run_BUSCO_unittests.TestParams.test_command_line_limit_type) ... ok test_help_long (tests.unittests.run_BUSCO_unittests.TestParams.test_help_long) ... ok test_help_short (tests.unittests.run_BUSCO_unittests.TestParams.test_help_short) ... ok test_version_long (tests.unittests.run_BUSCO_unittests.TestParams.test_version_long) ... ok test_version_short (tests.unittests.run_BUSCO_unittests.TestParams.test_version_short) ... ok test_config_main_configured (tests.unittests.ConfigManager_unittests.TestConfigManager.test_config_main_configured) ... ok test_config_main_validated (tests.unittests.ConfigManager_unittests.TestConfigManager.test_config_main_validated) ... ok test_get_config_from_env (tests.unittests.ConfigManager_unittests.TestConfigManager.test_get_config_from_env) ... ok test_get_config_from_params (tests.unittests.ConfigManager_unittests.TestConfigManager.test_get_config_from_params) ... ok test_autoconfig_init_adds_specific_parameters (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_adds_specific_parameters) ... ok test_autoconfig_init_calls_super (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_calls_super) ... ok test_autoconfig_init_creates_paths (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_creates_paths) ... ok test_autoconfig_init_downloads_lineage (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_downloads_lineage) ... ok test_autoconfig_init_loads_lineage_config (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_loads_lineage_config) ... ok test_autoconfig_init_propagates_mainconfig (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_propagates_mainconfig) ... 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. ok test_autoconfig_init_sets_results_dirname (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_sets_results_dirname) ... ok test_autolineage_create_path_method_calls_parent (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autolineage_create_path_method_calls_parent) ... 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. ok test_batch_mode_false_with_error (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_batch_mode_false_with_error) ... ok test_batch_mode_false_with_file (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_batch_mode_false_with_file) ... ok test_batch_mode_true (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_batch_mode_true) ... ok test_catch_disallowed_keys (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_catch_disallowed_keys) ... 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. ok test_check_lineage_present_false (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_check_lineage_present_false) ... 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. ok test_check_lineage_present_true_with_dataset_version_correct (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_check_lineage_present_true_with_dataset_version_correct) ... ok test_check_lineage_present_true_with_dataset_version_mismatch (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_check_lineage_present_true_with_dataset_version_mismatch) ... ok test_check_lineage_present_true_with_invalid_dataset_version (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_check_lineage_present_true_with_invalid_dataset_version) ... ok test_check_lineage_present_true_with_odb_missing (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_check_lineage_present_true_with_odb_missing) ... ok test_config_auto_lineage_both_selected_warning (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_auto_lineage_both_selected_warning) ... ok test_config_auto_lineage_dataset_specified_warning (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_auto_lineage_dataset_specified_warning) ... ok test_config_auto_lineage_none_selected_no_lineage_warning (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_auto_lineage_none_selected_no_lineage_warning) ... ok test_config_auto_lineage_settings (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_auto_lineage_settings) ... ok test_config_default_params (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_default_params) ... ok test_config_structure (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_structure) ... 2023-12-19 23:17:42 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. ok test_config_update_args_bool (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_update_args_bool) ... 2023-12-19 23:17:42 INFO: Quiet mode selected. All subsequent INFO log messages to stdout suppressed. Detailed log still available in logs/busco.log ok test_config_update_args_nonbool (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_update_args_nonbool) ... ok test_create_required_paths (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_create_required_paths) ... ok test_downloader_initialized (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_downloader_initialized) ... ok test_evalue_default (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_evalue_default) ... ok test_evalue_nondefault (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_evalue_nondefault) ... ok test_expand_all_paths_hmmsearch (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_expand_all_paths_hmmsearch) ... ok test_expand_all_paths_relative_path_current_dir (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_expand_all_paths_relative_path_current_dir) ... ok test_expand_all_paths_relative_path_parent_dir (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_expand_all_paths_relative_path_parent_dir) ... ok test_expand_all_paths_tilde (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_expand_all_paths_tilde) ... ok test_limit_value_out_of_range (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_limit_value_out_of_range) ... ok test_limit_value_within_range (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_limit_value_within_range) ... ok test_log_config (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_log_config) ... ok test_mandatory_keys_check_log (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_mandatory_keys_check_log) ... ok test_mandatory_keys_check_missing_param_in (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_mandatory_keys_check_missing_param_in) ... ok test_mandatory_keys_check_missing_param_mode (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_mandatory_keys_check_missing_param_mode) ... ok test_mandatory_keys_check_missing_param_out (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_mandatory_keys_check_missing_param_out) ... ok test_out_value_check_invalid (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_out_value_check_invalid) ... ok test_out_value_check_valid (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_out_value_check_valid) ... ok test_previous_run_check_with_existing_run_and_restart (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_previous_run_check_with_existing_run_and_restart) ... ok test_previous_run_check_with_existing_run_no_force (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_previous_run_check_with_existing_run_no_force) ... ok test_previous_run_check_with_existing_run_with_force_and_log (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_previous_run_check_with_existing_run_with_force_and_log) ... ok test_previous_run_check_without_existing_run (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_previous_run_check_without_existing_run) ... ok test_previous_run_check_without_existing_run_and_restart (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_previous_run_check_without_existing_run_and_restart) ... ok test_propagate_config (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_propagate_config) ... ok test_read_config_file (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_read_config_file) ... ok test_read_config_file_duplicateerror (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_read_config_file_duplicateerror) ... ok test_read_config_file_ioerror (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_read_config_file_ioerror) ... ok test_read_config_file_parseerror (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_read_config_file_parseerror) ... ok test_required_input_exists_false (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_required_input_exists_false) ... ok test_set_results_dirname (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_set_results_dirname) ... ok test_validation (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_validation) ... ok test_cleanup_disused_runs (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_cleanup_disused_runs) ... ok test_evaluate_first_order_tiebreak (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_evaluate_first_order_tiebreak) ... ok test_evaluate_multiple_runners (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_evaluate_multiple_runners) ... ok test_evaluate_second_order_tiebreak (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_evaluate_second_order_tiebreak) ... ok test_evaluate_single_runner (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_evaluate_single_runner) ... ok test_evaluate_third_order_tiebreak (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_evaluate_third_order_tiebreak) ... ok test_get_best_match_lineage (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_get_best_match_lineage) ... ok test_init_autolineage (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_init_autolineage) ... ok test_record_results_first_run (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_record_results_first_run) ... ok test_record_results_multiple_runs (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_record_results_multiple_runs) ... ok test_run_auto_selector_lineage_lists_no_virus (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_run_auto_selector_lineage_lists_no_virus) ... ok test_run_lineages_initializes_BuscoConfigAuto (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_run_lineages_initializes_BuscoConfigAuto) ... ok test_run_lineages_initializes_BuscoRunner (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_run_lineages_initializes_BuscoRunner) ... skipped 'Skipping for now, ends with Mock iterable error' test_run_lineages_returns_runners (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_run_lineages_returns_runners) ... ok test_run_lineages_runs_analysis (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_run_lineages_runs_analysis) ... ok test_init_eukaryota_augustus_checks_filetype (tests.unittests.GenomeAnalysis_unittests.TestConfigManager.test_init_eukaryota_augustus_checks_filetype) ... ok test_init_tools_eukaryota_augustus (tests.unittests.GenomeAnalysis_unittests.TestConfigManager.test_init_tools_eukaryota_augustus) ... ok test_init_tools_eukaryota_metaeuk (tests.unittests.GenomeAnalysis_unittests.TestConfigManager.test_init_tools_eukaryota_metaeuk) ... ok test_init_tools_prokaryota (tests.unittests.GenomeAnalysis_unittests.TestConfigManager.test_init_tools_prokaryota) ... ok test_run_analysis_metaeuk (tests.unittests.GenomeAnalysis_unittests.TestConfigManager.test_run_analysis_metaeuk) ... ok test_auto_select_lineage_call_function_gets_lineage_dataset (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_auto_select_lineage_call_function_gets_lineage_dataset) ... ok test_auto_select_lineage_call_function_initializes_asl (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_auto_select_lineage_call_function_initializes_asl) ... ok test_auto_select_lineage_call_function_returns_lineage_dataset (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_auto_select_lineage_call_function_returns_lineage_dataset) ... ok test_auto_select_lineage_call_function_returns_parent (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_auto_select_lineage_call_function_returns_parent) ... ok test_auto_select_lineage_call_function_runs_asl (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_auto_select_lineage_call_function_runs_asl) ... ok test_auto_select_lineage_call_function_selects_runner (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_auto_select_lineage_call_function_selects_runner) ... ok test_config_set_parent_dataset_if_not_virus (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_config_set_parent_dataset_if_not_virus) ... ok test_config_updated_if_lineage_missing (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_config_updated_if_lineage_missing) ... ok ---------------------------------------------------------------------- Ran 96 tests in 0.635s OK (skipped=1) I: pybuild base:310: cd /<>/.pybuild/cpython3_3.11/build; python3.11 -m unittest tests/unittest_runner.py -v test_cmdline_options_all_long (tests.unittests.run_BUSCO_unittests.TestParams.test_cmdline_options_all_long) ... ok test_cmdline_options_all_short (tests.unittests.run_BUSCO_unittests.TestParams.test_cmdline_options_all_short) ... ok test_cmdline_options_short_minimum (tests.unittests.run_BUSCO_unittests.TestParams.test_cmdline_options_short_minimum) ... ok test_command_line_cpu_type (tests.unittests.run_BUSCO_unittests.TestParams.test_command_line_cpu_type) ... ok test_command_line_evalue_type (tests.unittests.run_BUSCO_unittests.TestParams.test_command_line_evalue_type) ... ok test_command_line_limit_type (tests.unittests.run_BUSCO_unittests.TestParams.test_command_line_limit_type) ... ok test_help_long (tests.unittests.run_BUSCO_unittests.TestParams.test_help_long) ... ok test_help_short (tests.unittests.run_BUSCO_unittests.TestParams.test_help_short) ... ok test_version_long (tests.unittests.run_BUSCO_unittests.TestParams.test_version_long) ... ok test_version_short (tests.unittests.run_BUSCO_unittests.TestParams.test_version_short) ... ok test_config_main_configured (tests.unittests.ConfigManager_unittests.TestConfigManager.test_config_main_configured) ... ok test_config_main_validated (tests.unittests.ConfigManager_unittests.TestConfigManager.test_config_main_validated) ... ok test_get_config_from_env (tests.unittests.ConfigManager_unittests.TestConfigManager.test_get_config_from_env) ... ok test_get_config_from_params (tests.unittests.ConfigManager_unittests.TestConfigManager.test_get_config_from_params) ... ok test_autoconfig_init_adds_specific_parameters (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_adds_specific_parameters) ... ok test_autoconfig_init_calls_super (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_calls_super) ... ok test_autoconfig_init_creates_paths (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_creates_paths) ... ok test_autoconfig_init_downloads_lineage (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_downloads_lineage) ... ok test_autoconfig_init_loads_lineage_config (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_loads_lineage_config) ... ok test_autoconfig_init_propagates_mainconfig (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_propagates_mainconfig) ... 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. ok test_autoconfig_init_sets_results_dirname (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autoconfig_init_sets_results_dirname) ... ok test_autolineage_create_path_method_calls_parent (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_autolineage_create_path_method_calls_parent) ... 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. ok test_batch_mode_false_with_error (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_batch_mode_false_with_error) ... ok test_batch_mode_false_with_file (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_batch_mode_false_with_file) ... ok test_batch_mode_true (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_batch_mode_true) ... ok test_catch_disallowed_keys (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_catch_disallowed_keys) ... 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. ok test_check_lineage_present_false (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_check_lineage_present_false) ... 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. ok test_check_lineage_present_true_with_dataset_version_correct (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_check_lineage_present_true_with_dataset_version_correct) ... ok test_check_lineage_present_true_with_dataset_version_mismatch (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_check_lineage_present_true_with_dataset_version_mismatch) ... ok test_check_lineage_present_true_with_invalid_dataset_version (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_check_lineage_present_true_with_invalid_dataset_version) ... ok test_check_lineage_present_true_with_odb_missing (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_check_lineage_present_true_with_odb_missing) ... ok test_config_auto_lineage_both_selected_warning (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_auto_lineage_both_selected_warning) ... ok test_config_auto_lineage_dataset_specified_warning (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_auto_lineage_dataset_specified_warning) ... ok test_config_auto_lineage_none_selected_no_lineage_warning (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_auto_lineage_none_selected_no_lineage_warning) ... ok test_config_auto_lineage_settings (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_auto_lineage_settings) ... ok test_config_default_params (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_default_params) ... ok test_config_structure (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_structure) ... 2023-12-19 23:17:44 WARNING: Running Auto Lineage Selector as no lineage dataset was specified. This will take a little longer than normal. If you know what lineage dataset you want to use, please specify this in the config file or using the -l (--lineage-dataset) flag in the command line. ok test_config_update_args_bool (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_update_args_bool) ... 2023-12-19 23:17:44 INFO: Quiet mode selected. All subsequent INFO log messages to stdout suppressed. Detailed log still available in logs/busco.log ok test_config_update_args_nonbool (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_config_update_args_nonbool) ... ok test_create_required_paths (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_create_required_paths) ... ok test_downloader_initialized (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_downloader_initialized) ... ok test_evalue_default (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_evalue_default) ... ok test_evalue_nondefault (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_evalue_nondefault) ... ok test_expand_all_paths_hmmsearch (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_expand_all_paths_hmmsearch) ... ok test_expand_all_paths_relative_path_current_dir (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_expand_all_paths_relative_path_current_dir) ... ok test_expand_all_paths_relative_path_parent_dir (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_expand_all_paths_relative_path_parent_dir) ... ok test_expand_all_paths_tilde (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_expand_all_paths_tilde) ... ok test_limit_value_out_of_range (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_limit_value_out_of_range) ... ok test_limit_value_within_range (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_limit_value_within_range) ... ok test_log_config (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_log_config) ... ok test_mandatory_keys_check_log (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_mandatory_keys_check_log) ... ok test_mandatory_keys_check_missing_param_in (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_mandatory_keys_check_missing_param_in) ... ok test_mandatory_keys_check_missing_param_mode (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_mandatory_keys_check_missing_param_mode) ... ok test_mandatory_keys_check_missing_param_out (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_mandatory_keys_check_missing_param_out) ... ok test_out_value_check_invalid (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_out_value_check_invalid) ... ok test_out_value_check_valid (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_out_value_check_valid) ... ok test_previous_run_check_with_existing_run_and_restart (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_previous_run_check_with_existing_run_and_restart) ... ok test_previous_run_check_with_existing_run_no_force (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_previous_run_check_with_existing_run_no_force) ... ok test_previous_run_check_with_existing_run_with_force_and_log (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_previous_run_check_with_existing_run_with_force_and_log) ... ok test_previous_run_check_without_existing_run (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_previous_run_check_without_existing_run) ... ok test_previous_run_check_without_existing_run_and_restart (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_previous_run_check_without_existing_run_and_restart) ... ok test_propagate_config (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_propagate_config) ... ok test_read_config_file (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_read_config_file) ... ok test_read_config_file_duplicateerror (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_read_config_file_duplicateerror) ... ok test_read_config_file_ioerror (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_read_config_file_ioerror) ... ok test_read_config_file_parseerror (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_read_config_file_parseerror) ... ok test_required_input_exists_false (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_required_input_exists_false) ... ok test_set_results_dirname (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_set_results_dirname) ... ok test_validation (tests.unittests.BuscoConfig_unittests.TestBuscoConfig.test_validation) ... ok test_cleanup_disused_runs (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_cleanup_disused_runs) ... ok test_evaluate_first_order_tiebreak (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_evaluate_first_order_tiebreak) ... ok test_evaluate_multiple_runners (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_evaluate_multiple_runners) ... ok test_evaluate_second_order_tiebreak (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_evaluate_second_order_tiebreak) ... ok test_evaluate_single_runner (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_evaluate_single_runner) ... ok test_evaluate_third_order_tiebreak (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_evaluate_third_order_tiebreak) ... ok test_get_best_match_lineage (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_get_best_match_lineage) ... ok test_init_autolineage (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_init_autolineage) ... ok test_record_results_first_run (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_record_results_first_run) ... ok test_record_results_multiple_runs (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_record_results_multiple_runs) ... ok test_run_auto_selector_lineage_lists_no_virus (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_run_auto_selector_lineage_lists_no_virus) ... ok test_run_lineages_initializes_BuscoConfigAuto (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_run_lineages_initializes_BuscoConfigAuto) ... ok test_run_lineages_initializes_BuscoRunner (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_run_lineages_initializes_BuscoRunner) ... skipped 'Skipping for now, ends with Mock iterable error' test_run_lineages_returns_runners (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_run_lineages_returns_runners) ... ok test_run_lineages_runs_analysis (tests.unittests.AutoLineage_unittests.TestAutoLineage.test_run_lineages_runs_analysis) ... ok test_init_eukaryota_augustus_checks_filetype (tests.unittests.GenomeAnalysis_unittests.TestConfigManager.test_init_eukaryota_augustus_checks_filetype) ... ok test_init_tools_eukaryota_augustus (tests.unittests.GenomeAnalysis_unittests.TestConfigManager.test_init_tools_eukaryota_augustus) ... ok test_init_tools_eukaryota_metaeuk (tests.unittests.GenomeAnalysis_unittests.TestConfigManager.test_init_tools_eukaryota_metaeuk) ... ok test_init_tools_prokaryota (tests.unittests.GenomeAnalysis_unittests.TestConfigManager.test_init_tools_prokaryota) ... ok test_run_analysis_metaeuk (tests.unittests.GenomeAnalysis_unittests.TestConfigManager.test_run_analysis_metaeuk) ... ok test_auto_select_lineage_call_function_gets_lineage_dataset (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_auto_select_lineage_call_function_gets_lineage_dataset) ... ok test_auto_select_lineage_call_function_initializes_asl (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_auto_select_lineage_call_function_initializes_asl) ... ok test_auto_select_lineage_call_function_returns_lineage_dataset (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_auto_select_lineage_call_function_returns_lineage_dataset) ... ok test_auto_select_lineage_call_function_returns_parent (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_auto_select_lineage_call_function_returns_parent) ... ok test_auto_select_lineage_call_function_runs_asl (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_auto_select_lineage_call_function_runs_asl) ... ok test_auto_select_lineage_call_function_selects_runner (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_auto_select_lineage_call_function_selects_runner) ... ok test_config_set_parent_dataset_if_not_virus (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_config_set_parent_dataset_if_not_virus) ... ok test_config_updated_if_lineage_missing (tests.unittests.BuscoRunner_unittests.TestAutoLineage.test_config_updated_if_lineage_missing) ... ok ---------------------------------------------------------------------- Ran 97 tests in 0.524s OK (skipped=1) make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install --destdir=debian/busco/ -a -O--buildsystem=pybuild I: pybuild base:310: /usr/bin/python3.12 setup.py install --root /<>/debian/busco /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() /usr/lib/python3.12/dist-packages/busco/busco_tools/miniprot.py:200: SyntaxWarning: invalid escape sequence '\*' /usr/lib/python3.12/dist-packages/busco/BuscoPlacer.py:211: SyntaxWarning: invalid escape sequence '\[' I: pybuild base:310: /usr/bin/python3 setup.py install --root /<>/debian/busco /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild dh_installexamples -a -O--buildsystem=pybuild dh_installman -a -O--buildsystem=pybuild dh_python3 -a -O--buildsystem=pybuild dh_installsystemduser -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 154 pkgstriptranslations: processing busco (in debian/busco); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/busco/DEBIAN/control, package busco, directory debian/busco pkgstripfiles: Truncating usr/share/doc/busco/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package busco ... pkgstripfiles: No PNG files. dpkg-deb: building package 'busco' in '../busco_5.5.0-2_arm64.deb'. dpkg-genbuildinfo --build=any -O../busco_5.5.0-2_arm64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../busco_5.5.0-2_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-12-19T23:17:48Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ busco_5.5.0-2_arm64.changes: ---------------------------- Format: 1.8 Date: Fri, 15 Dec 2023 17:09:43 +0000 Source: busco Binary: busco Built-For-Profiles: noudeb Architecture: arm64 Version: 5.5.0-2 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Komolehin Israel Timilehin Description: busco - benchmarking sets of universal single-copy orthologs Closes: 1010653 Changes: busco (5.5.0-2) unstable; urgency=medium . * Team upload. . [ Komolehin Israel Timilehin ] * Added autopkgtest to check hmmer and prodigal integration (Closes: #1010653) . [ Andreas Tille ] * drop debian/gbp.conf * Remove trailing whitespace in debian/changelog (routine-update) * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) Checksums-Sha1: d63963a9d440aca5e7e4a9081e2f09a1dffc2b4b 8094 busco_5.5.0-2_arm64.buildinfo 08d916ad4f65cd5cab71c9cd4898a444c7942f00 295350 busco_5.5.0-2_arm64.deb Checksums-Sha256: 2326f0e49ed5fb4681948a7ce902dd2387e79d93877d19543b834d7bd701e31d 8094 busco_5.5.0-2_arm64.buildinfo 9b97626079d857f580e1e7d714371f66b5097cd9cc93a35165f38a8a71617f2a 295350 busco_5.5.0-2_arm64.deb Files: a40a926ba92d0efb65637d5a119888f5 8094 science optional busco_5.5.0-2_arm64.buildinfo f12ab7aced526e1b7c4e1be4d7ca38a9 295350 science optional busco_5.5.0-2_arm64.deb /<>/busco_5.5.0-2_arm64.changes.new could not be renamed to /<>/busco_5.5.0-2_arm64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: busco Binary: busco Architecture: arm64 Version: 5.5.0-2 Checksums-Md5: f12ab7aced526e1b7c4e1be4d7ca38a9 295350 busco_5.5.0-2_arm64.deb Checksums-Sha1: 08d916ad4f65cd5cab71c9cd4898a444c7942f00 295350 busco_5.5.0-2_arm64.deb Checksums-Sha256: 9b97626079d857f580e1e7d714371f66b5097cd9cc93a35165f38a8a71617f2a 295350 busco_5.5.0-2_arm64.deb Build-Origin: Ubuntu Build-Architecture: arm64 Build-Date: Tue, 19 Dec 2023 23:17:48 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13ubuntu5), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), binutils (= 2.41.50.20231214-1ubuntu1), binutils-aarch64-linux-gnu (= 2.41.50.20231214-1ubuntu1), binutils-common (= 2.41.50.20231214-1ubuntu1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), coreutils (= 9.4-2ubuntu1), cpp (= 4:13.2.0-2ubuntu1), cpp-13 (= 13.2.0-9ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.8ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-python (= 6.20231204), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1ubuntu5), dpkg-dev (= 1.22.1ubuntu5), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), fontconfig-config (= 2.14.2-6ubuntu1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-extra (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-urw-base35 (= 20200910-7), g++ (= 4:13.2.0-2ubuntu1), g++-13 (= 13.2.0-9ubuntu1), gcc (= 4:13.2.0-2ubuntu1), gcc-13 (= 13.2.0-9ubuntu1), gcc-13-base (= 13.2.0-9ubuntu1), gettext (= 0.21-14), gettext-base (= 0.21-14), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hmmer (= 3.4+dfsg-2), hostname (= 3.23+nmu1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 13.2.0-9ubuntu1), libatomic1 (= 13.2.0-9ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbinutils (= 2.41.50.20231214-1ubuntu1), libblas3 (= 3.11.0-2build1), libblkid1 (= 2.39.2-6ubuntu1), libbrotli1 (= 1.1.0-2), libbsd0 (= 0.11.7-4), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcairo2 (= 1.18.0-1), libcap-ng0 (= 0.8.3-3), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-9ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41.50.20231214-1ubuntu1), libctf0 (= 2.41.50.20231214-1ubuntu1), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.11.8ubuntu1), libdeflate0 (= 1.18-1), libdivsufsort3 (= 2.0.1-5), libdpkg-perl (= 1.22.1ubuntu5), libdw1 (= 0.190-1), libelf1 (= 0.190-1), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-2), libfile-stripnondeterminism-perl (= 1.13.1-1), libfontconfig1 (= 2.14.2-6ubuntu1), libfontenc1 (= 1:1.1.4-1build3), libfreetype6 (= 2.13.2+dfsg-1), libfribidi0 (= 1.0.13-3), libgcc-13-dev (= 13.2.0-9ubuntu1), libgcc-s1 (= 13.2.0-9ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgfortran5 (= 13.2.0-9ubuntu1), libglib2.0-0 (= 2.78.3-1), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgomp1 (= 13.2.0-9ubuntu1), libgpg-error0 (= 1.47-3build1), libgprofng0 (= 2.41.50.20231214-1ubuntu1), libgraphite2-3 (= 1.3.14-1build2), libgssapi-krb5-2 (= 1.20.1-5build1), libharfbuzz0b (= 8.0.1-1build1), libhwasan0 (= 13.2.0-9ubuntu1), libicu74 (= 74.2-1ubuntu1), libimagequant0 (= 2.18.0-1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-9ubuntu1), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6.1ubuntu1), libjpeg-turbo8 (= 2.1.5-2ubuntu1), libjpeg8 (= 8c-2ubuntu11), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), liblapack3 (= 3.11.0-2build1), liblcms2-2 (= 2.14-2), liblerc4 (= 4.0.0+ds-4ubuntu1), liblsan0 (= 13.2.0-9ubuntu1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.5-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmount1 (= 2.39.2-6ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncursesw6 (= 6.4+20231209-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libopenjp2-7 (= 2.5.0-2), libpam-modules (= 1.5.2-9.1ubuntu1), libpam-modules-bin (= 1.5.2-9.1ubuntu1), libpam-runtime (= 1.5.2-9.1ubuntu1), libpam0g (= 1.5.2-9.1ubuntu1), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.36 (= 5.36.0-10ubuntu1), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpng16-16 (= 1.6.40-2), libpython3-stdlib (= 3.11.4-5ubuntu1), libpython3.11-minimal (= 3.11.7-2), libpython3.11-stdlib (= 3.11.7-2), libpython3.12-minimal (= 3.12.1-2), libpython3.12-stdlib (= 3.12.1-2), libraqm0 (= 0.10.1-1), libreadline8 (= 8.2-3), libseccomp2 (= 2.5.4-2ubuntu1), libselinux1 (= 3.5-1build2), libsframe1 (= 2.41.50.20231214-1ubuntu1), libsharpyuv0 (= 1.3.2-0.3), libsmartcols1 (= 2.39.2-6ubuntu1), libsqlite3-0 (= 3.44.2-1), libssl3 (= 3.0.10-1ubuntu3), libstdc++-13-dev (= 13.2.0-9ubuntu1), libstdc++6 (= 13.2.0-9ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255-1ubuntu1), libtiff6 (= 4.5.1+git230720-1ubuntu1), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-9ubuntu1), libubsan1 (= 13.2.0-9ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255-1ubuntu1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-6ubuntu1), libwebp7 (= 1.3.2-0.3), libwebpdemux2 (= 1.3.2-0.3), libwebpmux3 (= 1.3.2-0.3), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libxau6 (= 1:1.0.9-1build5), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.3-0ubuntu5), libxext6 (= 2:1.3.4-1build1), libxml2 (= 2.9.14+dfsg-1.3build3), libxrender1 (= 1:0.9.10-1.1), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.0-14.14), login (= 1:4.13+dfsg1-3ubuntu1), lto-disabled-list (= 44), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), media-types (= 10.1.0), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), netbase (= 6.4), patch (= 2.7.6-7build2), perl (= 5.36.0-10ubuntu1), perl-base (= 5.36.0-10ubuntu1), perl-modules-5.36 (= 5.36.0-10ubuntu1), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.4-5ubuntu1), python3-all (= 3.11.4-5ubuntu1), python3-biopython (= 1.81+dfsg-2), python3-cairo (= 1.25.1-1), python3-chardet (= 5.2.0+dfsg-1), python3-dateutil (= 2.8.2-3), python3-distutils (= 3.11.5-1), python3-freetype (= 2.4.0-1), python3-lib2to3 (= 3.11.5-1), python3-minimal (= 3.11.4-5ubuntu1), python3-numpy (= 1:1.24.2-2), python3-pandas (= 1.5.3+dfsg-10), python3-pandas-lib (= 1.5.3+dfsg-10), python3-pil (= 10.1.0-1), python3-pkg-resources (= 68.1.2-2), python3-reportlab (= 4.0.8-1), python3-rlpycairo (= 0.3.0-3), python3-setuptools (= 68.1.2-2), python3-six (= 1.16.0-4), python3-tz (= 2023.3.post1-2), python3.11 (= 3.11.7-2), python3.11-minimal (= 3.11.7-2), python3.12 (= 3.12.1-2), python3.12-minimal (= 3.12.1-2), readline-common (= 8.2-3), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sgml-base (= 1.31), sysvinit-utils (= 3.08-3ubuntu1), tar (= 1.34+dfsg-1.2ubuntu2), tzdata (= 2023c-9ubuntu1), util-linux (= 2.39.2-6ubuntu1), w3c-sgml-lib (= 1.3-3), x11-common (= 1:7.7+23ubuntu2), xfonts-encodings (= 1:1.0.5-0ubuntu2), xfonts-utils (= 1:7.7+6build2), xml-core (= 0.19), xz-utils (= 5.4.5-0.1), zlib1g (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1702660183" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ busco_5.5.0-2_arm64.deb ----------------------- new Debian package, version 2.0. size 295350 bytes: control archive=2075 bytes. 771 bytes, 17 lines control 3309 bytes, 38 lines md5sums 257 bytes, 12 lines * postinst #!/bin/sh 370 bytes, 12 lines * prerm #!/bin/sh Package: busco Version: 5.5.0-2 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1233 Depends: python3:any, python3-pandas, python3-biopython, hmmer, prodigal, bbmap Section: science Priority: optional Homepage: https://gitlab.com/ezlab/busco Description: benchmarking sets of universal single-copy orthologs Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs (BUSCO). . * Automated selection of lineages issued from https://www.orthodb.org/ * Automated download of all necessary files and datasets to conduct a run * Use prodigal for non-eukaryotic genomes drwxr-xr-x root/root 0 2023-12-15 17:09 ./ drwxr-xr-x root/root 0 2023-12-15 17:09 ./usr/ drwxr-xr-x root/root 0 2023-12-15 17:09 ./usr/bin/ -rwxr-xr-x root/root 1607 2023-12-15 17:09 ./usr/bin/busco drwxr-xr-x root/root 0 2023-12-15 17:09 ./usr/lib/ drwxr-xr-x root/root 0 2023-12-15 17:09 ./usr/lib/python3/ drwxr-xr-x root/root 0 2023-12-15 17:09 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2023-12-15 17:09 ./usr/lib/python3/dist-packages/BUSCO-5.5.0.egg-info/ -rw-r--r-- root/root 336 2023-12-15 17:09 ./usr/lib/python3/dist-packages/BUSCO-5.5.0.egg-info/PKG-INFO -rw-r--r-- root/root 1 2023-12-15 17:09 ./usr/lib/python3/dist-packages/BUSCO-5.5.0.egg-info/dependency_links.txt -rw-r--r-- root/root 6 2023-12-15 17:09 ./usr/lib/python3/dist-packages/BUSCO-5.5.0.egg-info/top_level.txt drwxr-xr-x root/root 0 2023-12-15 17:09 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08:12 ./usr/lib/python3/dist-packages/busco/busco_tools/Toolset.py -rw-r--r-- root/root 0 2023-08-10 08:12 ./usr/lib/python3/dist-packages/busco/busco_tools/__init__.py -rw-r--r-- root/root 30478 2023-08-10 08:12 ./usr/lib/python3/dist-packages/busco/busco_tools/augustus.py -rw-r--r-- root/root 10696 2023-08-10 08:12 ./usr/lib/python3/dist-packages/busco/busco_tools/base.py -rw-r--r-- root/root 3538 2023-12-15 17:09 ./usr/lib/python3/dist-packages/busco/busco_tools/bbtools.py -rw-r--r-- root/root 21227 2023-08-10 08:12 ./usr/lib/python3/dist-packages/busco/busco_tools/blast.py -rw-r--r-- root/root 52477 2023-08-10 08:12 ./usr/lib/python3/dist-packages/busco/busco_tools/hmmer.py -rw-r--r-- root/root 29428 2023-08-10 08:12 ./usr/lib/python3/dist-packages/busco/busco_tools/metaeuk.py -rw-r--r-- root/root 11416 2023-08-10 08:12 ./usr/lib/python3/dist-packages/busco/busco_tools/miniprot.py -rw-r--r-- root/root 14241 2023-08-10 08:12 ./usr/lib/python3/dist-packages/busco/busco_tools/prodigal.py -rw-r--r-- root/root 2821 2023-08-10 08:12 ./usr/lib/python3/dist-packages/busco/busco_tools/sepp.py -rw-r--r-- root/root 12356 2023-08-10 08:12 ./usr/lib/python3/dist-packages/busco/run_BUSCO.py drwxr-xr-x root/root 0 2023-12-15 17:09 ./usr/share/ drwxr-xr-x root/root 0 2023-12-15 17:09 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-15 17:09 ./usr/share/doc/busco/ -rw-r--r-- root/root 872 2023-12-15 17:09 ./usr/share/doc/busco/changelog.Debian.gz -rw-r--r-- root/root 1350 2023-12-15 17:09 ./usr/share/doc/busco/copyright drwxr-xr-x root/root 0 2023-12-15 17:09 ./usr/share/doc/busco/examples/ -rw-r--r-- root/root 3096 2023-12-15 17:09 ./usr/share/doc/busco/examples/config.ini -rw-r--r-- root/root 810006 2023-08-10 08:12 ./usr/share/doc/busco/examples/genome.fna drwxr-xr-x root/root 0 2023-12-15 17:09 ./usr/share/man/ drwxr-xr-x root/root 0 2023-12-15 17:09 ./usr/share/man/man1/ -rw-r--r-- root/root 2021 2023-12-15 17:09 ./usr/share/man/man1/busco.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Type: any Build-Space: 5788 Build-Time: 11 Distribution: noble-proposed Host Architecture: arm64 Install-Time: 63 Job: busco_5.5.0-2.dsc Machine Architecture: arm64 Package: busco Package-Time: 75 Source-Version: 5.5.0-2 Space: 5788 Status: successful Version: 5.5.0-2 -------------------------------------------------------------------------------- Finished at 2023-12-19T23:17:48Z Build needed 00:01:15, 5788k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=arm64 PACKAGEBUILD-27578387 Scanning for processes to kill in build PACKAGEBUILD-27578387