bowtie2 2.3.5.1-3 source package in Ubuntu
Changelog
bowtie2 (2.3.5.1-3) unstable; urgency=medium
* Team upload.
* Enable all architectures via simde.
* Unset M64_FLAG and POPCNT_CAPABILITY on non AMD64 archs.
* debian/rules: Fix testing in with cowdancer or eatmydata by unsetting
LD_PRELOAD (the address sanitizer must be first in the library list)
* Added missing ${perl:Depends} for the bowtie2 binary package
-- Michael R. Crusoe <email address hidden> Sat, 14 Dec 2019 13:42:14 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| bowtie2_2.3.5.1-3.dsc | 2.1 KiB | f4d26f458b20f7b6d61da2dec3d1c463639c9bce4f0beeacfabf0abe897c5601 |
| bowtie2_2.3.5.1.orig.tar.xz | 8.4 MiB | 2a96a484c1eac48eb79ff2a88643bc71686b0adfef83e2ecbeac00d7df916e3d |
| bowtie2_2.3.5.1-3.debian.tar.xz | 47.4 KiB | 87c123a503ff2de6147fa46e07b2f83668adb24a88d4e4c43317005073f59f23 |
Available diffs
- diff from 2.3.5.1-2 to 2.3.5.1-3 (46.4 KiB)
No changes file available.
Binary packages built by this source
- bowtie2: ultrafast memory-efficient short read aligner
is an ultrafast and memory-efficient tool for aligning sequencing reads
to long reference sequences. It is particularly good at aligning reads
of about 50 up to 100s or 1,000s of characters, and particularly good
at aligning to relatively long (e.g. mammalian) genomes.
.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint
small: for the human genome, its memory footprint is typically
around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
- bowtie2-dbgsym: debug symbols for bowtie2
- bowtie2-examples: Examples for bowtie2
An ultrafast and memory-efficient tool for aligning sequencing reads
to long reference sequences. It is particularly good at aligning reads
of about 50 up to 100s or 1,000s of characters, and particularly good
at aligning to relatively long (e.g. mammalian) genomes.
.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint
small: for the human genome, its memory footprint is typically
around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
.
This package provides some example data to work with bowtie2.
