bowtie 1.2.1.1+dfsg-1 source package in Ubuntu
Changelog
bowtie (1.2.1.1+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version
* Moved packaging from SVN to Git
* debhelper 10
* Simplified d/watch
* Build-Depends: zlib1g-dev
[ Steffen Moeller ]
* debian/upstream/metadata:
- Completed references to registries
- yamllint cleanliness
[ Alexandre Mestiashvili ]
* Update d/copyright:
- use https for Format field
- link to versioned license
- add .cvsignore to Files-Excluded list
- add myself to debian/* section
* Add myself to uploaders, bump Standards-Version
* Rearrange patch headers (cme fix dpkg), update spelling.patch
* Re-introduce no_hash_style_both_for_mips.patch fixing build on mips64el
Closes: #864448
* Update d/rules:
- drop get-orig-source target
- hardcode binary package name instead of using dpkg-parsechangelog
* Disable unit tests for example6 and example9 as the output is different
compared to older bowtie versions
* Override lintian's warnings for binaries used with wrapper scripts
-- Alexandre Mestiashvili <email address hidden> Thu, 19 Oct 2017 20:35:11 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any-amd64 alpha arm64 mips64el ppc64 ppc64el s390x sparc64 all
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| bowtie_1.2.1.1+dfsg-1.dsc | 2.4 KiB | a3801b0bea5e41c747ded6d287e4035f7f137d390bec2b8bb2ca0ae98f51a783 |
| bowtie_1.2.1.1+dfsg.orig.tar.xz | 6.4 MiB | b01126d502c57da10bee0fa4b82a99142d6180d903454a2db61bf7fdc9a3566c |
| bowtie_1.2.1.1+dfsg-1.debian.tar.xz | 16.7 KiB | 2fb4feaa51e86e76609015b355b4a0047a680d4730fa84b7f22bdea419b7b29d |
Available diffs
- diff from 1.2.0+dfsg-1 to 1.2.1.1+dfsg-1 (142.3 KiB)
No changes file available.
Binary packages built by this source
- bowtie: Ultrafast memory-efficient short read aligner
This package addresses the problem to interpret the results from the
latest (2010) DNA sequencing technologies. Those will yield fairly
short stretches and those cannot be interpreted directly. It is the
challenge for tools like Bowtie to give a chromosomal location to the
short stretches of DNA sequenced per run.
.
Bowtie aligns short DNA sequences (reads) to the human genome at a rate
of over 25 million 35-bp reads per hour. Bowtie indexes the genome with
a Burrows-Wheeler index to keep its memory footprint small: typically
about 2.2 GB for the human genome (2.9 GB for paired-end).
- bowtie-dbgsym: debug symbols for bowtie
- bowtie-examples: Examples for bowtie, the ultrafast memory-efficient short read aligner
This package addresses the problem to interpret the results from the
latest (2010) DNA sequencing technologies. Those will yield fairly
short stretches and those cannot be interpreted directly. It is the
challenge for tools like Bowtie to give a chromosomal location to the
short stretches of DNA sequenced per run.
.
Bowtie aligns short DNA sequences (reads) to the human genome at a rate
of over 25 million 35-bp reads per hour. Bowtie indexes the genome with
a Burrows-Wheeler index to keep its memory footprint small: typically
about 2.2 GB for the human genome (2.9 GB for paired-end).
.
This package provides some example data to work with bowtie.
