bedtools 2.30.0+dfsg-1 source package in Ubuntu


bedtools (2.30.0+dfsg-1) unstable; urgency=medium

  [ √Čtienne Mollier ]
  * Team upload.
  * New upstream version 2.30.0+dfsg.
  * Refresh 2to3.patch and hardening patch.
  * Remove test related patches, 32-bit-fixes.patch and spelling patch;
    applied upstream.
  * Do not include htsutil as a side test program in bedtools anymore;
    the test tool is inlined as subcommand to reduce memory footprint.

  [ John Marshall ]
  * Add htsutil patch to implement the bedtools htsutil subcommand.

  [ √Čtienne Mollier ]
  * d/rules: set $htsutil to use the bedtools htsutil subcommand.
  * d/t/run-unit-test: use the bedtools htsutil subcommand.

 -- √Čtienne Mollier <email address hidden>  Wed, 27 Jan 2021 17:26:26 +0100

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Uploaded by:
Debian Med on 2021-01-27
Uploaded to:
Original maintainer:
Debian Med
any all
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Impish release on 2021-04-23 universe science
Hirsute release on 2021-01-28 universe science


File Size SHA-256 Checksum
bedtools_2.30.0+dfsg-1.dsc 2.1 KiB f5e91531a14a35de381bbc981044078bed35e9019a2c238fa7cfc92adf214ccf
bedtools_2.30.0+dfsg.orig.tar.xz 13.3 MiB 3a1f3bd16e6ee034af6236c6ec23feec5ceeaddeb951530e9bd2be22636e385a
bedtools_2.30.0+dfsg-1.debian.tar.xz 13.0 KiB 0519b92c0a809fb9c37aa4fa067ca21b47ad00b6bbeef396520638388e9be7be

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Binary packages built by this source

bedtools: suite of utilities for comparing genomic features

 The BEDTools utilities allow one to address common genomics tasks such as
 finding feature overlaps and computing coverage. The utilities are largely
 based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using
 BEDTools, one can develop sophisticated pipelines that answer complicated
 research questions by streaming several BEDTools together.
 The groupBy utility is distributed in the filo package.

bedtools-dbgsym: debug symbols for bedtools
bedtools-test: test data for the bedtools package

 Test data for the BEDTools suite of utilities for comparing genomic features.
 It is distributed in a separate package because it is large and