gff2gff.py crashed with ModuleNotFoundError in Noble
Affects | Status | Importance | Assigned to | Milestone | |
---|---|---|---|---|---|
bcftools (Debian) |
Fix Released
|
Unknown
|
|||
bcftools (Ubuntu) |
Confirmed
|
Undecided
|
Unassigned |
Bug Description
gff2gff.py fails to run with the error:
$ gff2gff.py
Traceback (most recent call last):
File "/usr/bin/
import gffutils
ModuleNotFoundE
ProblemType: Crash
DistroRelease: Ubuntu 24.04
Package: bcftools 1.19-1build2
ProcVersionSign
Uname: Linux 6.8.0-22-generic x86_64
ApportVersion: 2.28.0-0ubuntu1
Architecture: amd64
CasperMD5CheckR
CurrentDesktop: ubuntu:GNOME
Date: Wed Apr 17 22:16:25 2024
ExecutablePath: /usr/bin/gff2gff.py
InstallationDate: Installed on 2024-04-10 (7 days ago)
InstallationMedia: Ubuntu 24.04 LTS "Noble Numbat" - Beta amd64 (20240410)
InterpreterPath: /usr/bin/python3.12
JournalErrors:
Apr 17 22:16:19 hostname org.gnome.
Apr 17 22:16:19 hostname org.gnome.
ProcCmdline: python3 /usr/bin/gff2gff.py
Python3Details: /usr/bin/
PythonArgs: ['/usr/
PythonDetails: N/A
SourcePackage: bcftools
Title: gff2gff.py crashed with ModuleNotFoundError in __main__: No module named 'gffutils'
Traceback:
Traceback (most recent call last):
File "/usr/bin/
import gffutils
ModuleNotFound
UpgradeStatus: No upgrade log present (probably fresh install)
UserGroups: adm cdrom dip lpadmin plugdev sudo users
information type: | Private → Public |
Changed in bcftools (Debian): | |
status: | Unknown → New |
Changed in bcftools (Debian): | |
status: | New → Fix Released |
Adding that guess-ploidy.py also fails with the error:
$ guess-ploidy.py --help guess-ploidy. py", line 29, in <module> rror: No module named 'matplotlib'
Traceback (most recent call last):
File "/usr/bin/
import matplotlib as mpl
ModuleNotFoundE