Ubuntu
bbmap package

bbmap 39.03+dfsg-1 source package in Ubuntu

Changelog

bbmap (39.03+dfsg-1) unstable; urgency=medium

  * Team upload
  * Fixing some syntax issues linked to seemingly old, unused code

  [ Andreas Tille ]
  * New upstream version
  * Standards-Version: 4.6.2 (routine-update)

 -- Pierre Gruet <email address hidden>  Thu, 19 Oct 2023 22:23:06 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
bbmap_39.03+dfsg-1.dsc 2.1 KiB 4b66b1d0f137b3cabd8735867f17be7a068668578116bff53fb79c9f31233a58
bbmap_39.03+dfsg.orig.tar.xz 4.9 MiB 142ad7b4794f7c542552234860e5b06bb512726d29cfbe9874eaefa717509261
bbmap_39.03+dfsg-1.debian.tar.xz 25.2 KiB a9ea1d528c7e48ee986b7e76170888d426df797f15be22e0ebe3255bcbb492cc

Available diffs

No changes file available.

Binary packages built by this source

bbmap: BBTools genomic aligner and other tools for short sequences

 The BBTools are a collection of small programs to solve recurrent
 tasks for the creative handling of short biological RNA/DNA sequences.
 This suite may be best known for its mapper, which is also the name of
 the project on sourceforge, but several tools have been added over time.
 All tools are multi-threaded, implemented platform-independently in Java:
 .
 BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling
 arbitrarily large genomes with millions of scaffolds. Handles Illumina,
 PacBio, 454, and other reads; very high sensitivity and tolerant of
 errors and numerous large indels.
 .
 BBNorm: Kmer-based error-correction and normalization tool.
 .
 Dedupe: Simplifies assemblies by removing duplicate or contained
 subsequences that share a target percent identity.
 .
 Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam,
 interleaved/paired, and ASCII-33/64, at over 500 MB/s.
 .
 BBDuk: Filters, trims, or masks reads with kmer matches to an
 artifact/contaminant file.

bbmap-jni: short read aligner and other bioinformatic tools - JNI library

 BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling
 arbitrarily large genomes with millions of scaffolds. Handles Illumina,
 PacBio, 454, and other reads; very high sensitivity and tolerant of
 errors and numerous large indels.
 .
 This package contains the architecture dependent library for the bbmap
 tools.

bbmap-jni-dbgsym: debug symbols for bbmap-jni