Ubuntu
bbmap package

bbmap 38.94+dfsg-2 source package in Ubuntu

Changelog

bbmap (38.94+dfsg-2) unstable; urgency=medium

  * d/control: add myself to uploaders.
  * add 32bit.patch; fixes autpkgtest failures on at least i386 and armhf.

 -- Étienne Mollier <email address hidden>  Wed, 06 Oct 2021 23:55:25 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
bbmap_38.94+dfsg-2.dsc 2.1 KiB cd690bfe23dda2826b8cad5b7e09f704dce1d3156ca8e20c8ca59b3a64c12d4e
bbmap_38.94+dfsg.orig.tar.xz 4.3 MiB 86e180b639d07feb9aa1eda7fe4ed66f9fa6367d5751b363bb36ca1b192f877a
bbmap_38.94+dfsg-2.debian.tar.xz 24.3 KiB 149ccc8489a789dd1bd8b9d87504c483d5f1a83d002ec97e8a53858c25b75d41

Available diffs

No changes file available.

Binary packages built by this source

bbmap: BBTools genomic aligner and other tools for short sequences

 The BBTools are a collection of small programs to solve recurrent
 tasks for the creative handling of short biological RNA/DNA sequences.
 This suite may be best known for its mapper, which is also the name of
 the project on sourceforge, but several tools have been added over time.
 All tools are multi-threaded, implemented platform-independently in Java:
 .
 BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling
 arbitrarily large genomes with millions of scaffolds. Handles Illumina,
 PacBio, 454, and other reads; very high sensitivity and tolerant of
 errors and numerous large indels.
 .
 BBNorm: Kmer-based error-correction and normalization tool.
 .
 Dedupe: Simplifies assemblies by removing duplicate or contained
 subsequences that share a target percent identity.
 .
 Reformat: Reformats reads between fasta/fastq/scarf/fasta+qual/sam,
 interleaved/paired, and ASCII-33/64, at over 500 MB/s.
 .
 BBDuk: Filters, trims, or masks reads with kmer matches to an
 artifact/contaminant file.

bbmap-jni: short read aligner and other bioinformatic tools - JNI library

 BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling
 arbitrarily large genomes with millions of scaffolds. Handles Illumina,
 PacBio, 454, and other reads; very high sensitivity and tolerant of
 errors and numerous large indels.
 .
 This package contains the architecture dependent library for the bbmap
 tools.

bbmap-jni-dbgsym: debug symbols for bbmap-jni