bbmap 38.79+dfsg-1 source package in Ubuntu
Changelog
bbmap (38.79+dfsg-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) -- Andreas Tille <email address hidden> Thu, 27 Feb 2020 11:28:29 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Focal | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| bbmap_38.79+dfsg-1.dsc | 2.0 KiB | d8bcb0a5bc02f1b152c519de4085c237491a4efc17906e360f56e2cd6cd6b555 |
| bbmap_38.79+dfsg.orig.tar.xz | 4.1 MiB | e31355e6eca257959826fc94540f174bbe7f10f5b57abb30f1c11c9f36865f94 |
| bbmap_38.79+dfsg-1.debian.tar.xz | 22.1 KiB | 6f69898a20ebc2e9a98b0fa6fea6aed7380d8f944af4c8a9fb79225377f7175f |
Available diffs
- diff from 38.73+dfsg-1 to 38.79+dfsg-1 (7.8 MiB)
No changes file available.
Binary packages built by this source
- bbmap: short read aligner and other bioinformatic tools
BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling
arbitrarily large genomes with millions of scaffolds. Handles Illumina,
PacBio, 454, and other reads; very high sensitivity and tolerant of
errors and numerous large indels.
.
BBMap is multithreaded as well as the other tools bundled into this
package for instance:
.
BBNorm: Kmer-based error-correction and normalization tool.
.
Dedupe: Simplifies assemblies by removing duplicate or contained
subsequences that share a target percent identity.
.
Reformat: Reformats reads between fasta/fastq/scarf/fasta+ qual/sam,
interleaved/paired, and ASCII-33/64, at over 500 MB/s.
.
BBDuk: Filters, trims, or masks reads with kmer matches to an
artifact/contaminant file.
- bbmap-jni: short read aligner and other bioinformatic tools - JNI library
BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling
arbitrarily large genomes with millions of scaffolds. Handles Illumina,
PacBio, 454, and other reads; very high sensitivity and tolerant of
errors and numerous large indels.
.
This package contains the architecture dependent library for the bbmap
tools.
- bbmap-jni-dbgsym: debug symbols for bbmap-jni
