If I re-run genprof, it calls logprof and I get (almost) nothing:

ranok@nebula:~$ sudo genprof /usr/bin/pidgin

Please start the application to be profiled in
another window and exercise its functionality now.

Once completed, select the "Scan" button below in
order to scan the system logs for AppArmor events. 

For each AppArmor event, you will be given the 
opportunity to choose whether the access should be 
allowed or denied.

Profiling: /usr/bin/pidgin

[(S)can system log for SubDomain events] / (F)inish
Reading log entries from /var/log/messages.
Updating AppArmor profiles in /etc/apparmor.d.

Profiling: /usr/bin/pidgin

[(S)can system log for SubDomain events] / (F)inish
FINISHING

Looking at my syslog.conf, it might be that Bastille is messing
something up, I'll try removing it and seeing if that fixes it.

tail /var/log/messages
Nov  1 13:50:22 localhost -- MARK --
Nov  1 14:10:22 localhost -- MARK --
Nov  1 14:10:47 localhost exiting on signal 15
Nov  1 15:07:58 localhost syslogd 1.4.1#21ubuntu3: restart.
Nov  1 15:08:21 localhost dhcdbd: Started up.
Nov  1 15:08:53 localhost gnome-power-manager: (ranok) Power Manager is
already running in this session.
Nov  1 15:13:29 localhost ranok: GenProf: 8d1fb148ac334a2ab38d647baa11795e
Nov  1 15:13:57 localhost ranok: GenProf: 811c44ade7f677853a091a006c24bf0a
Nov  1 15:15:35 localhost ranok: GenProf: 143964d75508277b830af8fae870e3dc
Nov  1 15:15:36 localhost ranok: GenProf: c2ab2a0e1b3022049b70c301f1df05af


If I don't run genprof, I normally see just the -- MARK -- and the stuff
from other daemons

JT


#  /etc/syslog.conf	Configuration file for syslogd.
#
#			For more information see syslog.conf(5)
#			manpage.

#
# First some standard logfiles.  Log by facility.
#

auth,authpriv.*			/var/log/auth.log
*.*;auth,authpriv.none		-/var/log/syslog
#cron.*				/var/log/cron.log
daemon.*			-/var/log/daemon.log
kern.*				-/var/log/kern.log
lpr.*				-/var/log/lpr.log
mail.*				-/var/log/mail.log
user.*				-/var/log/user.log

#
# Logging for the mail system.  Split it up so that
# it is easy to write scripts to parse these files.
#
mail.info			-/var/log/mail.info
mail.warn			-/var/log/mail.warn
mail.err			/var/log/mail.err

# Logging for INN news system
#
news.crit			/var/log/news/news.crit
news.err			/var/log/news/news.err
news.notice			-/var/log/news/news.notice

#
# Some `catch-all' logfiles.
#
*.=debug;\
	auth,authpriv.none;\
	news.none;mail.none	-/var/log/debug
*.=info;*.=notice;*.=warn;\
	auth,authpriv.none;\
	cron,daemon.none;\
	mail,news.none		-/var/log/messages

#
# Emergencies are sent to everybody logged in.
#
*.emerg				*

#
# I like to have messages displayed on the console, but only on a virtual
# console I usually leave idle.
#
#daemon,mail.*;\
#	news.=crit;news.=err;news.=notice;\
#	*.=debug;*.=info;\
#	*.=notice;*.=warn	/dev/tty8

# The named pipe /dev/xconsole is for the `xconsole' utility.  To use it,
# you must invoke `xconsole' with the `-file' option:
# 
#    $ xconsole -file /dev/xconsole [...]
#
# NOTE: adjust the list below, or you'll go crazy if you have a reasonably
#      busy site..
#
daemon.*;mail.*;\
	news.err;\
	*.=debug;*.=info;\
	*.=notice;*.=warn	|/dev/xconsole

############ BASTILLE ADDITIONS BELOW : ################# 
# Log all kernel messages to the new file /var/log/kernel
kern.*	/var/log/kernel

# Log all logins to /var/log/loginlog
auth.*;user.*;daemon.none	/var/log/loginlog

# Log additional data to the Alt-F7 and Alt-F8 screens (Pseudo TTY 7 and 8)

*.info;mail.none;authpriv.none	/dev/tty7
authpriv.*	/dev/tty7
*.warn;*.err	/dev/tty7
kern.*	/dev/tty7
mail.*	/dev/tty8

*.*	/dev/tty12
########## BASTILLE ADDITIONS CONCLUDED : ###############