bamtools 2.5.2+dfsg-6 source package in Ubuntu
Changelog
bamtools (2.5.2+dfsg-6) unstable; urgency=medium
* Fix output data on bigendian architectures (Thanks a lot for the
patch from Vladimir Petko <email address hidden>!)
Closes: #1075990
* Standards-Version: 4.7.0 (routine-update)
* Build-Depends: s/pkg-config/pkgconf/
-- Andreas Tille <email address hidden> Fri, 12 Jul 2024 13:46:23 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any all
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | misc |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| bamtools_2.5.2+dfsg-6.dsc | 2.3 KiB | 01b617ae6af45156a7052d289c8d28126f55007b1835b85d79a2004a5a36c26c |
| bamtools_2.5.2+dfsg.orig.tar.xz | 152.1 KiB | bba4d268cb9457cd836b59c60eac6a9f25e10cd9aea646f03e5deffb82c1c5c1 |
| bamtools_2.5.2+dfsg-6.debian.tar.xz | 11.1 KiB | e4c667cb47d93420c0473c6f674d8a138a1e64362aeca55b81341aeb7e353785 |
Available diffs
No changes file available.
Binary packages built by this source
- bamtools: toolkit for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the bamtools command-line toolkit.
.
Available bamtools commands:
convert Converts between BAM and a number of other formats
count Prints number of alignments in BAM file(s)
coverage Prints coverage statistics from the input BAM file
filter Filters BAM file(s) by user-specified criteria
header Prints BAM header information
index Generates index for BAM file
merge Merge multiple BAM files into single file
random Select random alignments from existing BAM file(s), intended more
as a testing tool.
resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
revert Removes duplicate marks and restores original base qualities
sort Sorts the BAM file according to some criteria
split Splits a BAM file on user-specified property, creating a new BAM
output file for each value found
stats Prints some basic statistics from input BAM file(s)
- bamtools-dbgsym: debug symbols for bamtools
- libbamtools-dev: C++ API for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the developers API package.
- libbamtools-doc: docs for dynamic library for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the documentation for the library.
- libbamtools2.5.2: dynamic library for manipulating BAM (genome alignment) files
BamTools facilitates research analysis and data management using BAM
files. It copes with the enormous amount of data produced by current
sequencing technologies that is typically stored in compressed, binary
formats that are not easily handled by the text-based parsers commonly
used in bioinformatics research.
.
BamTools provides both a C++ API for BAM file support as well as a
command-line toolkit.
.
This is the runtime library.
- libbamtools2.5.2-dbgsym: debug symbols for libbamtools2.5.2
