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bamtools package

bamtools 2.5.2+dfsg-2 source package in Ubuntu

Changelog

bamtools (2.5.2+dfsg-2) unstable; urgency=medium

  * Do not try to move Doxyfile.bak which does not exist any more in doxygen
    1.9.4
    Closes: #1015861
  * Build-Depends: pkg-config (since cmake is asking for it)
  * Standards-Version: 4.6.1 (routine-update)

 -- Andreas Tille <email address hidden>  Fri, 02 Sep 2022 19:53:29 +0200

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Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
bamtools_2.5.2+dfsg-2.dsc 2.3 KiB 21ee202eeaabd3d4032d4e3a45e1f7906133f9d31c12f7bbffc594bc49fe0883
bamtools_2.5.2+dfsg.orig.tar.xz 152.1 KiB bba4d268cb9457cd836b59c60eac6a9f25e10cd9aea646f03e5deffb82c1c5c1
bamtools_2.5.2+dfsg-2.debian.tar.xz 9.7 KiB c4b626900aea55388f4793e45a5b78f7def79e73d724475a555e458b7216642a

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Binary packages built by this source

bamtools: toolkit for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the bamtools command-line toolkit.
 .
 Available bamtools commands:
  convert Converts between BAM and a number of other formats
  count Prints number of alignments in BAM file(s)
  coverage Prints coverage statistics from the input BAM file
  filter Filters BAM file(s) by user-specified criteria
  header Prints BAM header information
  index Generates index for BAM file
  merge Merge multiple BAM files into single file
  random Select random alignments from existing BAM file(s), intended more
           as a testing tool.
  resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
  revert Removes duplicate marks and restores original base qualities
  sort Sorts the BAM file according to some criteria
  split Splits a BAM file on user-specified property, creating a new BAM
           output file for each value found
  stats Prints some basic statistics from input BAM file(s)

bamtools-dbgsym: debug symbols for bamtools
libbamtools-dev: C++ API for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the developers API package.

libbamtools-doc: docs for dynamic library for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the documentation for the library.

libbamtools2.5.2: dynamic library for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the runtime library.

libbamtools2.5.2-dbgsym: debug symbols for libbamtools2.5.2