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bamtools package

bamtools 2.4.0+dfsg-2 source package in Ubuntu

Changelog

bamtools (2.4.0+dfsg-2) unstable; urgency=medium

  [ Kevin Murray ]
  * Fix re-upload confusion
  * Fix build of doxygen docs, add docs-base
  * Use uscan file renaming to name upstream tarball bamtools-Vxxx.tar.gz
  * Refresh patch queue

  [ Andreas Tille]
  * Fix linitan overides for bamtools

 -- Kevin Murray <email address hidden>  Thu, 24 Sep 2015 17:27:16 +1000

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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Series Pocket Published Component Section

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File Size SHA-256 Checksum
bamtools_2.4.0+dfsg-2.dsc 2.2 KiB 38de404f7b61a34fa1c292919b7e0500f0640f0ed3a337bac5f0be55a0eeb8cb
bamtools_2.4.0+dfsg.orig.tar.xz 153.0 KiB 1f66a4971e70eac5c4aea6ee0c3e95d42af004b9578642b39812e7a552ea561d
bamtools_2.4.0+dfsg-2.debian.tar.xz 8.1 KiB 38e7e16949513e1ee66ee85dcf6bb1e0d1406ce29266abf9b740f60c5760daa3

No changes file available.

Binary packages built by this source

bamtools: toolkit for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the bamtools command-line toolkit.
 .
 Available bamtools commands:
  convert Converts between BAM and a number of other formats
  count Prints number of alignments in BAM file(s)
  coverage Prints coverage statistics from the input BAM file
  filter Filters BAM file(s) by user-specified criteria
  header Prints BAM header information
  index Generates index for BAM file
  merge Merge multiple BAM files into single file
  random Select random alignments from existing BAM file(s), intended more
           as a testing tool.
  resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
  revert Removes duplicate marks and restores original base qualities
  sort Sorts the BAM file according to some criteria
  split Splits a BAM file on user-specified property, creating a new BAM
           output file for each value found
  stats Prints some basic statistics from input BAM file(s)

bamtools-dbgsym: debug symbols for package bamtools

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the bamtools command-line toolkit.
 .
 Available bamtools commands:
  convert Converts between BAM and a number of other formats
  count Prints number of alignments in BAM file(s)
  coverage Prints coverage statistics from the input BAM file
  filter Filters BAM file(s) by user-specified criteria
  header Prints BAM header information
  index Generates index for BAM file
  merge Merge multiple BAM files into single file
  random Select random alignments from existing BAM file(s), intended more
           as a testing tool.
  resolve Resolves paired-end reads (marking the IsProperPair flag as needed)
  revert Removes duplicate marks and restores original base qualities
  sort Sorts the BAM file according to some criteria
  split Splits a BAM file on user-specified property, creating a new BAM
           output file for each value found
  stats Prints some basic statistics from input BAM file(s)

libbamtools-dev: C++ API for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the developers API package.

libbamtools2.4.0: dynamic library for manipulating BAM (genome alignment) files

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the runtime library.

libbamtools2.4.0-dbgsym: debug symbols for package libbamtools2.4.0

 BamTools facilitates research analysis and data management using BAM
 files. It copes with the enormous amount of data produced by current
 sequencing technologies that is typically stored in compressed, binary
 formats that are not easily handled by the text-based parsers commonly
 used in bioinformatics research.
 .
 BamTools provides both a C++ API for BAM file support as well as a
 command-line toolkit.
 .
 This is the runtime library.