RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux kishi05 3.2.0-60-highbank #91-Ubuntu SMP PREEMPT Wed Feb 19 04:47:26 UTC 2014 armv7l Buildd toolchain package versions: launchpad-buildd_124~0.IS.08.04 python-lpbuildd_124~0.IS.08.04 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.5. Syncing the system clock with the buildd NTP service... 10 Jul 14:08:56 ntpdate[13687]: adjust time server 10.211.37.1 offset -0.003072 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6143574', '/home/buildd/filecache-default/2b732608511adadb6366d6898962714b2efa4faf'] Unpacking chroot for build PACKAGEBUILD-6143574 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6143574'] Mounting chroot for build PACKAGEBUILD-6143574 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6143574', 'deb http://ftpmaster.internal/ubuntu utopic main universe', 'deb http://ftpmaster.internal/ubuntu utopic-security main universe', 'deb http://ftpmaster.internal/ubuntu utopic-updates main universe', 'deb http://ftpmaster.internal/ubuntu utopic-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-6143574 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6143574', 'armhf'] Updating debian chroot for build PACKAGEBUILD-6143574 Ign http://ftpmaster.internal utopic InRelease Ign http://ftpmaster.internal utopic-security InRelease Ign http://ftpmaster.internal utopic-updates InRelease Ign http://ftpmaster.internal utopic-proposed InRelease Get:1 http://ftpmaster.internal utopic Release.gpg [933 B] Get:2 http://ftpmaster.internal utopic-security Release.gpg [933 B] Get:3 http://ftpmaster.internal utopic-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal utopic-proposed Release.gpg [933 B] Get:5 http://ftpmaster.internal utopic Release [58.5 kB] Get:6 http://ftpmaster.internal utopic-security Release [58.5 kB] Get:7 http://ftpmaster.internal utopic-updates Release [58.5 kB] Ign http://archive-team.internal utopic InRelease Ign http://archive-team.internal utopic Release.gpg Get:8 http://ftpmaster.internal utopic-proposed Release [58.5 kB] Get:9 http://ftpmaster.internal utopic/main armhf Packages [1330 kB] Get:10 http://archive-team.internal utopic Release [730 B] Get:11 http://archive-team.internal utopic/main armhf Packages Ign http://archive-team.internal utopic/main Translation-en Get:12 http://ftpmaster.internal utopic/universe armhf Packages [5931 kB] Get:13 http://ftpmaster.internal utopic/main Translation-en [771 kB] Get:14 http://ftpmaster.internal utopic/universe Translation-en [4227 kB] Get:15 http://ftpmaster.internal utopic-security/main armhf Packages [14 B] Get:16 http://ftpmaster.internal utopic-security/universe armhf Packages [14 B] Get:17 http://ftpmaster.internal utopic-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal utopic-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal utopic-updates/main armhf Packages [14 B] Get:20 http://ftpmaster.internal utopic-updates/universe armhf Packages [14 B] Get:21 http://ftpmaster.internal utopic-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal utopic-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal utopic-proposed/main armhf Packages [46.3 kB] Get:24 http://ftpmaster.internal utopic-proposed/universe armhf Packages [225 kB] Get:25 http://ftpmaster.internal utopic-proposed/main Translation-en [28.8 kB] Get:26 http://ftpmaster.internal utopic-proposed/universe Translation-en [149 kB] Fetched 12.9 MB in 16s (796 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgnutls28 Use 'apt-get autoremove' to remove it. The following NEW packages will be installed: init-system-helpers libgnutls-deb0-28 The following packages will be upgraded: apt apt-transport-https bash binutils bsdutils busybox-initramfs bzip2 ca-certificates cpp cpp-4.8 dpkg dpkg-dev e2fslibs e2fsprogs fakeroot findutils g++ g++-4.8 gcc gcc-4.8 gcc-4.8-base gcc-4.9-base gnupg gpgv hostname ifupdown initramfs-tools initramfs-tools-bin initscripts iproute2 kmod libapt-pkg4.12 libasan0 libasn1-8-heimdal libatomic1 libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcgmanager0 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdpkg-perl libdrm2 libfakeroot libffi6 libgcc-4.8-dev libgcc1 libgmp10 libgnutls26 libgnutls28 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libisl10 libkmod2 libkrb5-26-heimdal libmount1 libnih-dbus1 libnih1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libplymouth2 libpng12-0 libprocps3 libroken18-heimdal libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-4.8-dev libstdc++6 libtasn1-6 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base make module-init-tools mount mountall multiarch-support openssl optipng passwd perl perl-base perl-modules plymouth procps sysv-rc sysvinit-utils tzdata udev upstart util-linux 113 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 46.2 MB of archives. After this operation, 1095 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main bash armhf 4.3-7ubuntu3 [502 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main dpkg armhf 1.17.10ubuntu1 [1921 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libc-bin armhf 2.19-4ubuntu1 [1000 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main upstart armhf 1.12.1-0ubuntu11 [372 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main lsb-base all 4.1+Debian11ubuntu8 [13.1 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main sysvinit-utils armhf 2.88dsf-41ubuntu16 [47.6 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main init-system-helpers all 1.19 [12.5 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main plymouth armhf 0.8.8-0ubuntu18 [85.5 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main libplymouth2 armhf 0.8.8-0ubuntu18 [65.1 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools-bin armhf 0.103ubuntu7 [8702 B] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools all 0.103ubuntu7 [44.6 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main mountall armhf 2.54 [55.5 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main initscripts armhf 2.88dsf-41ubuntu16 [35.0 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main sysv-rc all 2.88dsf-41ubuntu16 [37.8 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main libselinux1 armhf 2.3-1 [50.5 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic-proposed/main perl-modules all 5.18.2-6 [2696 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic-proposed/main perl armhf 5.18.2-6 [2105 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic-proposed/main perl-base armhf 5.18.2-6 [1068 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main bzip2 armhf 1.0.6-5ubuntu4 [31.0 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main libbz2-1.0 armhf 1.0.6-5ubuntu4 [29.1 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic/main libpam0g armhf 1.1.8-3ubuntu1 [52.4 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage-common all 2.3-1 [6278 B] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage1 armhf 2.3-1 [58.8 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main libsepol1 armhf 2.3-1 [96.5 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules-bin armhf 1.1.8-3ubuntu1 [28.4 kB] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules armhf 1.1.8-3ubuntu1 [218 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/main passwd armhf 1:4.1.5.1-1.1ubuntu1 [720 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/main libuuid1 armhf 2.20.1-5.1ubuntu21 [11.4 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic/main libblkid1 armhf 2.20.1-5.1ubuntu21 [56.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ utopic/main libdbus-1-3 armhf 1.6.18-0ubuntu9 [110 kB] Get:31 http://ftpmaster.internal/ubuntu/ utopic/main libcgmanager0 armhf 0.26-0ubuntu4 [29.1 kB] Get:32 http://ftpmaster.internal/ubuntu/ utopic/main libkmod2 armhf 18-1ubuntu1 [34.6 kB] Get:33 http://ftpmaster.internal/ubuntu/ utopic/main libnih-dbus1 armhf 1.0.3-4ubuntu26 [13.5 kB] Get:34 http://ftpmaster.internal/ubuntu/ utopic/main libnih1 armhf 1.0.3-4ubuntu26 [44.2 kB] Get:35 http://ftpmaster.internal/ubuntu/ utopic/main tzdata all 2014e-1 [190 kB] Get:36 http://ftpmaster.internal/ubuntu/ utopic/main util-linux armhf 2.20.1-5.1ubuntu21 [433 kB] Get:37 http://ftpmaster.internal/ubuntu/ utopic/main libprocps3 armhf 1:3.3.9-1ubuntu5 [28.6 kB] Get:38 http://ftpmaster.internal/ubuntu/ utopic/main procps armhf 1:3.3.9-1ubuntu5 [200 kB] Get:39 http://ftpmaster.internal/ubuntu/ utopic/main udev armhf 204-12ubuntu1 [719 kB] Get:40 http://ftpmaster.internal/ubuntu/ utopic/main libudev1 armhf 204-12ubuntu1 [31.5 kB] Get:41 http://ftpmaster.internal/ubuntu/ utopic/main busybox-initramfs armhf 1:1.22.0-6ubuntu1 [160 kB] Get:42 http://ftpmaster.internal/ubuntu/ utopic/main kmod armhf 18-1ubuntu1 [79.2 kB] Get:43 http://ftpmaster.internal/ubuntu/ utopic/main module-init-tools all 18-1ubuntu1 [2084 B] Get:44 http://ftpmaster.internal/ubuntu/ utopic/main findutils armhf 4.4.2-9 [223 kB] Get:45 http://ftpmaster.internal/ubuntu/ utopic/main libdrm2 armhf 2.4.54-1 [19.7 kB] Get:46 http://ftpmaster.internal/ubuntu/ utopic/main libpng12-0 armhf 1.2.50-1ubuntu3 [107 kB] Get:47 http://ftpmaster.internal/ubuntu/ utopic/main iproute2 armhf 3.15.0-2 [381 kB] Get:48 http://ftpmaster.internal/ubuntu/ utopic/main ifupdown armhf 0.7.48.1ubuntu4 [47.0 kB] Get:49 http://ftpmaster.internal/ubuntu/ utopic/main libc6-dev armhf 2.19-4ubuntu1 [1579 kB] Get:50 http://ftpmaster.internal/ubuntu/ utopic/main libc-dev-bin armhf 2.19-4ubuntu1 [61.5 kB] Get:51 http://ftpmaster.internal/ubuntu/ utopic/main linux-libc-dev armhf 3.15.0-6.11 [742 kB] Get:52 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libgomp1 armhf 4.9.0-10ubuntu2 [35.2 kB] Get:53 http://ftpmaster.internal/ubuntu/ utopic-proposed/main gcc-4.9-base armhf 4.9.0-10ubuntu2 [15.5 kB] Get:54 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libgcc1 armhf 1:4.9.0-10ubuntu2 [40.0 kB] Get:55 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libatomic1 armhf 4.9.0-10ubuntu2 [6332 B] Get:56 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libstdc++6 armhf 4.9.0-10ubuntu2 [248 kB] Get:57 http://ftpmaster.internal/ubuntu/ utopic/main libc6 armhf 2.19-4ubuntu1 [3913 kB] Get:58 http://ftpmaster.internal/ubuntu/ utopic/main e2fslibs armhf 1.42.10-1.1ubuntu1 [172 kB] Get:59 http://ftpmaster.internal/ubuntu/ utopic/main e2fsprogs armhf 1.42.10-1.1ubuntu1 [665 kB] Get:60 http://ftpmaster.internal/ubuntu/ utopic/main hostname armhf 3.15ubuntu2 [11.0 kB] Get:61 http://ftpmaster.internal/ubuntu/ utopic/main login armhf 1:4.1.5.1-1.1ubuntu1 [298 kB] Get:62 http://ftpmaster.internal/ubuntu/ utopic/main mount armhf 2.20.1-5.1ubuntu21 [107 kB] Get:63 http://ftpmaster.internal/ubuntu/ utopic/main libapt-pkg4.12 armhf 1.0.4ubuntu5 [597 kB] Get:64 http://ftpmaster.internal/ubuntu/ utopic/main libusb-0.1-4 armhf 2:0.1.12-24 [14.8 kB] Get:65 http://ftpmaster.internal/ubuntu/ utopic/main gpgv armhf 1.4.16-1.2ubuntu1 [133 kB] Get:66 http://ftpmaster.internal/ubuntu/ utopic/main gnupg armhf 1.4.16-1.2ubuntu1 [549 kB] Get:67 http://ftpmaster.internal/ubuntu/ utopic/main apt armhf 1.0.4ubuntu5 [938 kB] Get:68 http://ftpmaster.internal/ubuntu/ utopic/main bsdutils armhf 1:2.20.1-5.1ubuntu21 [34.1 kB] Get:69 http://ftpmaster.internal/ubuntu/ utopic/main libcomerr2 armhf 1.42.10-1.1ubuntu1 [62.8 kB] Get:70 http://ftpmaster.internal/ubuntu/ utopic/main libdebconfclient0 armhf 0.191ubuntu1 [5752 B] Get:71 http://ftpmaster.internal/ubuntu/ utopic/main libmount1 armhf 2.20.1-5.1ubuntu21 [52.4 kB] Get:72 http://ftpmaster.internal/ubuntu/ utopic/main libss2 armhf 1.42.10-1.1ubuntu1 [66.2 kB] Get:73 http://ftpmaster.internal/ubuntu/ utopic/main libffi6 armhf 3.1-2 [15.7 kB] Get:74 http://ftpmaster.internal/ubuntu/ utopic/main libgmp10 armhf 2:6.0.0+dfsg-4 [191 kB] Get:75 http://ftpmaster.internal/ubuntu/ utopic/main libtasn1-6 armhf 4.0-2 [35.6 kB] Get:76 http://ftpmaster.internal/ubuntu/ utopic/main libgnutls28 armhf 3.2.15-1 [416 kB] Get:77 http://ftpmaster.internal/ubuntu/ utopic/main libsqlite3-0 armhf 3.8.5-2ubuntu1 [298 kB] Get:78 http://ftpmaster.internal/ubuntu/ utopic/main libssl1.0.0 armhf 1.0.1f-1ubuntu6 [661 kB] Get:79 http://ftpmaster.internal/ubuntu/ utopic/main libroken18-heimdal armhf 1.6~rc2+dfsg-7 [33.8 kB] Get:80 http://ftpmaster.internal/ubuntu/ utopic/main libasn1-8-heimdal armhf 1.6~rc2+dfsg-7 [133 kB] Get:81 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libgnutls-deb0-28 armhf 3.2.15-2 [415 kB] Get:82 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libcurl3-gnutls armhf 7.36.0-2ubuntu2 [144 kB] Get:83 http://ftpmaster.internal/ubuntu/ utopic/main libgnutls26 armhf 2.12.23-15ubuntu2 [359 kB] Get:84 http://ftpmaster.internal/ubuntu/ utopic/main libhcrypto4-heimdal armhf 1.6~rc2+dfsg-7 [74.6 kB] Get:85 http://ftpmaster.internal/ubuntu/ utopic/main libheimbase1-heimdal armhf 1.6~rc2+dfsg-7 [24.0 kB] Get:86 http://ftpmaster.internal/ubuntu/ utopic/main libwind0-heimdal armhf 1.6~rc2+dfsg-7 [47.1 kB] Get:87 http://ftpmaster.internal/ubuntu/ utopic/main libhx509-5-heimdal armhf 1.6~rc2+dfsg-7 [84.4 kB] Get:88 http://ftpmaster.internal/ubuntu/ utopic/main libkrb5-26-heimdal armhf 1.6~rc2+dfsg-7 [159 kB] Get:89 http://ftpmaster.internal/ubuntu/ utopic/main libheimntlm0-heimdal armhf 1.6~rc2+dfsg-7 [13.4 kB] Get:90 http://ftpmaster.internal/ubuntu/ utopic/main libgssapi3-heimdal armhf 1.6~rc2+dfsg-7 [74.0 kB] Get:91 http://ftpmaster.internal/ubuntu/ utopic/main libsasl2-modules-db armhf 2.1.26.dfsg1-10 [12.6 kB] Get:92 http://ftpmaster.internal/ubuntu/ utopic/main libsasl2-2 armhf 2.1.26.dfsg1-10 [41.4 kB] Get:93 http://ftpmaster.internal/ubuntu/ utopic/main libisl10 armhf 0.12.2-2 [329 kB] Get:94 http://ftpmaster.internal/ubuntu/ utopic/main g++-4.8 armhf 4.8.3-4ubuntu2 [4256 kB] Get:95 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8 armhf 4.8.3-4ubuntu2 [4412 kB] Get:96 http://ftpmaster.internal/ubuntu/ utopic/main cpp-4.8 armhf 4.8.3-4ubuntu2 [3939 kB] Get:97 http://ftpmaster.internal/ubuntu/ utopic-proposed/main binutils armhf 2.24.51.20140709-1ubuntu1 [2095 kB] Get:98 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++-4.8-dev armhf 4.8.3-4ubuntu2 [1078 kB] Get:99 http://ftpmaster.internal/ubuntu/ utopic/main libgcc-4.8-dev armhf 4.8.3-4ubuntu2 [212 kB] Get:100 http://ftpmaster.internal/ubuntu/ utopic/main libasan0 armhf 4.8.3-4ubuntu2 [57.0 kB] Get:101 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8-base armhf 4.8.3-4ubuntu2 [15.2 kB] Get:102 http://ftpmaster.internal/ubuntu/ utopic/main libpam-runtime all 1.1.8-3ubuntu1 [39.7 kB] Get:103 http://ftpmaster.internal/ubuntu/ utopic/main multiarch-support armhf 2.19-4ubuntu1 [4548 B] Get:104 http://ftpmaster.internal/ubuntu/ utopic/main apt-transport-https armhf 1.0.4ubuntu5 [23.0 kB] Get:105 http://ftpmaster.internal/ubuntu/ utopic/main openssl armhf 1.0.1f-1ubuntu6 [486 kB] Get:106 http://ftpmaster.internal/ubuntu/ utopic/main ca-certificates all 20140325 [184 kB] Get:107 http://ftpmaster.internal/ubuntu/ utopic/main cpp armhf 4:4.9.0-3ubuntu5 [27.6 kB] Get:108 http://ftpmaster.internal/ubuntu/ utopic/main dpkg-dev all 1.17.10ubuntu1 [714 kB] Get:109 http://ftpmaster.internal/ubuntu/ utopic/main libdpkg-perl all 1.17.10ubuntu1 [181 kB] Get:110 http://ftpmaster.internal/ubuntu/ utopic/main make armhf 4.0-8 [134 kB] Get:111 http://ftpmaster.internal/ubuntu/ utopic/main libfakeroot armhf 1.20-3ubuntu3 [21.3 kB] Get:112 http://ftpmaster.internal/ubuntu/ utopic/main fakeroot armhf 1.20-3ubuntu3 [55.2 kB] Get:113 http://ftpmaster.internal/ubuntu/ utopic/main gcc armhf 4:4.9.0-3ubuntu5 [5304 B] Get:114 http://ftpmaster.internal/ubuntu/ utopic/main g++ armhf 4:4.9.0-3ubuntu5 [1618 B] Get:115 http://ftpmaster.internal/ubuntu/ utopic/main optipng armhf 0.7.5-1 [77.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 46.2 MB in 9s (4846 kB/s) (Reading database ... 11664 files and directories currently installed.) Preparing to unpack .../bash_4.3-7ubuntu3_armhf.deb ... Unpacking bash (4.3-7ubuntu3) over (4.3-7ubuntu1) ... Setting up bash (4.3-7ubuntu3) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 11664 files and directories currently installed.) Preparing to unpack .../dpkg_1.17.10ubuntu1_armhf.deb ... Unpacking dpkg (1.17.10ubuntu1) over (1.17.9ubuntu1) ... Setting up dpkg (1.17.10ubuntu1) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... 11664 files and directories currently installed.) Preparing to unpack .../libc-bin_2.19-4ubuntu1_armhf.deb ... Unpacking libc-bin (2.19-4ubuntu1) over (2.19-0ubuntu6) ... Preparing to unpack .../libc6_2.19-4ubuntu1_armhf.deb ... Unpacking libc6:armhf (2.19-4ubuntu1) over (2.19-0ubuntu6) ... Preparing to unpack .../libgcc1_1%3a4.9.0-10ubuntu2_armhf.deb ... 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Setting up libnih-dbus1:armhf (1.0.3-4ubuntu26) ... Setting up libcgmanager0:armhf (0.26-0ubuntu4) ... Setting up libudev1:armhf (204-12ubuntu1) ... Setting up libkmod2:armhf (18-1ubuntu1) ... Setting up libprocps3:armhf (1:3.3.9-1ubuntu5) ... Setting up initramfs-tools-bin (0.103ubuntu7) ... Setting up busybox-initramfs (1:1.22.0-6ubuntu1) ... Setting up kmod (18-1ubuntu1) ... update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match kmod Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match kmod Default-Stop values (none) Setting up module-init-tools (18-1ubuntu1) ... Setting up libpng12-0:armhf (1.2.50-1ubuntu3) ... Setting up libplymouth2:armhf (0.8.8-0ubuntu18) ... Setting up iproute2 (3.15.0-2) ... Setting up libdrm2:armhf (2.4.54-1) ... Setting up bzip2 (1.0.6-5ubuntu4) ... Setting up libc-dev-bin (2.19-4ubuntu1) ... Setting up linux-libc-dev:armhf (3.15.0-6.11) ... Setting up libc6-dev:armhf (2.19-4ubuntu1) ... Setting up libgomp1:armhf (4.9.0-10ubuntu2) ... Setting up libatomic1:armhf (4.9.0-10ubuntu2) ... Setting up libffi6:armhf (3.1-2) ... Setting up libgmp10:armhf (2:6.0.0+dfsg-4) ... Setting up libtasn1-6:armhf (4.0-2) ... Setting up libgnutls28:armhf (3.2.15-1) ... Setting up libsqlite3-0:armhf (3.8.5-2ubuntu1) ... Setting up libssl1.0.0:armhf (1.0.1f-1ubuntu6) ... Setting up libroken18-heimdal:armhf (1.6~rc2+dfsg-7) ... Setting up libasn1-8-heimdal:armhf (1.6~rc2+dfsg-7) ... Setting up libgnutls-deb0-28:armhf (3.2.15-2) ... Setting up libcurl3-gnutls:armhf (7.36.0-2ubuntu2) ... Setting up libgnutls26:armhf (2.12.23-15ubuntu2) ... Setting up libhcrypto4-heimdal:armhf (1.6~rc2+dfsg-7) ... Setting up libheimbase1-heimdal:armhf (1.6~rc2+dfsg-7) ... Setting up libwind0-heimdal:armhf (1.6~rc2+dfsg-7) ... Setting up libhx509-5-heimdal:armhf (1.6~rc2+dfsg-7) ... Setting up libkrb5-26-heimdal:armhf (1.6~rc2+dfsg-7) ... Setting up libheimntlm0-heimdal:armhf (1.6~rc2+dfsg-7) ... Setting up libgssapi3-heimdal:armhf (1.6~rc2+dfsg-7) ... Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-10) ... Setting up libsasl2-2:armhf (2.1.26.dfsg1-10) ... Setting up libisl10:armhf (0.12.2-2) ... Setting up gcc-4.8-base:armhf (4.8.3-4ubuntu2) ... Setting up cpp-4.8 (4.8.3-4ubuntu2) ... Setting up binutils (2.24.51.20140709-1ubuntu1) ... Setting up libasan0:armhf (4.8.3-4ubuntu2) ... Setting up libgcc-4.8-dev:armhf (4.8.3-4ubuntu2) ... Setting up gcc-4.8 (4.8.3-4ubuntu2) ... Setting up libstdc++-4.8-dev:armhf (4.8.3-4ubuntu2) ... Setting up g++-4.8 (4.8.3-4ubuntu2) ... Setting up apt-transport-https (1.0.4ubuntu5) ... Setting up openssl (1.0.1f-1ubuntu6) ... Setting up ca-certificates (20140325) ... Setting up cpp (4:4.9.0-3ubuntu5) ... Setting up make (4.0-8) ... Setting up libfakeroot:armhf (1.20-3ubuntu3) ... Setting up fakeroot (1.20-3ubuntu3) ... Setting up gcc (4:4.9.0-3ubuntu5) ... Setting up g++ (4:4.9.0-3ubuntu5) ... Setting up optipng (0.7.5-1) ... Setting up perl-modules (5.18.2-6) ... Setting up perl (5.18.2-6) ... Setting up init-system-helpers (1.19) ... Setting up mountall (2.54) ... Installing new version of config file /etc/init/mounted-proc.conf ... Setting up initscripts (2.88dsf-41ubuntu16) ... Installing new version of config file /etc/init.d/ondemand ... Setting up procps (1:3.3.9-1ubuntu5) ... Installing new version of config file /etc/init/procps.conf ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libdpkg-perl (1.17.10ubuntu1) ... Setting up dpkg-dev (1.17.10ubuntu1) ... Setting up udev (204-12ubuntu1) ... Installing new version of config file /etc/init.d/udev ... Installing new version of config file /etc/init/udev-finish.conf ... A chroot environment has been detected, udev not started. update-initramfs: deferring update (trigger activated) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match udev Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match udev Default-Stop values (none) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match udev-finish Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match udev-finish Default-Stop values (none) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match lvm2 Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match lvm2 Default-Stop values (none) Setting up initramfs-tools (0.103ubuntu7) ... update-initramfs: deferring update (trigger activated) Setting up ifupdown (0.7.48.1ubuntu4) ... Installing new version of config file /etc/init/network-interface.conf ... update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match networking Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match networking Default-Stop values (0 6) Setting up upstart (1.12.1-0ubuntu11) ... Installing new version of config file /etc/upstart-xsessions ... Installing new version of config file /etc/cron.daily/upstart ... Setting up plymouth (0.8.8-0ubuntu18) ... update-initramfs: deferring update (trigger activated) Processing triggers for libc-bin (2.19-4ubuntu1) ... Processing triggers for ca-certificates (20140325) ... Updating certificates in /etc/ssl/certs... 7 added, 3 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for initramfs-tools (0.103ubuntu7) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6143574', 'armhf', 'utopic-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=utopic-proposed', '--purpose=PRIMARY', '--architecture=armhf', '--comp=universe', 'bamtools_2.3.0+dfsg-2.dsc'] Initiating build PACKAGEBUILD-6143574 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.2.0-60-highbank #91-Ubuntu SMP PREEMPT Wed Feb 19 04:47:26 UTC 2014 armv7l Automatic build of bamtools_2.3.0+dfsg-2 on kishi05 by sbuild/armhf 1.170.5 Build started at 20140710-1412 ****************************************************************************** bamtools_2.3.0+dfsg-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9.0.0), d-shlibs (>= 0.56), cmake, libz-dev, libjsoncpp-dev, help2man Checking for already installed source dependencies... debhelper: missing d-shlibs: missing cmake: missing libz-dev: missing libjsoncpp-dev: missing help2man: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper d-shlibs cmake libz-dev libjsoncpp-dev help2man Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgnutls28 Use 'apt-get autoremove' to remove it. The following extra packages will be installed: bsdmainutils cmake-data dh-apparmor file gettext gettext-base groff-base intltool-debian libarchive13 libasprintf0c2 libcroco3 libcurl3 libexpat1 libglib2.0-0 libjsoncpp0 liblocale-gettext-perl liblzo2-2 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation codeblocks eclipse dh-make apparmor-easyprof gettext-doc groff lrzip less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cmake cmake-data d-shlibs debhelper dh-apparmor file gettext gettext-base groff-base help2man intltool-debian libarchive13 libasprintf0c2 libcroco3 libcurl3 libexpat1 libglib2.0-0 libjsoncpp-dev libjsoncpp0 liblocale-gettext-perl liblzo2-2 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 9582 kB of archives. After this operation, 36.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main libexpat1 armhf 2.1.0-6 [52.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main liblocale-gettext-perl armhf 1.05-8 [17.3 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libmagic1 armhf 1:5.18-1ubuntu1 [194 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main libasprintf0c2 armhf 0.18.3.2-1ubuntu1 [6174 B] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main libglib2.0-0 armhf 2.41.1-2 [928 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main libpipeline1 armhf 1.3.0-1 [19.6 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main libxml2 armhf 2.9.1+dfsg1-3ubuntu7 [485 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main groff-base armhf 1.22.2-6 [930 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main bsdmainutils armhf 9.0.5ubuntu1 [195 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main man-db armhf 2.6.7.1-1 [832 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main liblzo2-2 armhf 2.06-1.2ubuntu1 [41.1 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main libarchive13 armhf 3.1.2-7ubuntu2 [228 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main libcroco3 armhf 0.6.8-2ubuntu1 [69.1 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libcurl3 armhf 7.36.0-2ubuntu2 [150 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main libunistring0 armhf 0.9.3-5ubuntu3 [251 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic/universe libjsoncpp0 armhf 0.6.0~rc2-3ubuntu1 [50.5 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main file armhf 1:5.18-1ubuntu1 [19.7 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main gettext-base armhf 0.18.3.2-1ubuntu1 [45.2 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main cmake-data all 2.8.12.2-0ubuntu4 [677 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main cmake armhf 2.8.12.2-0ubuntu4 [2318 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic-proposed/main d-shlibs all 0.56ubuntu1 [10.0 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic/main gettext armhf 0.18.3.2-1ubuntu1 [779 kB] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main po-debconf all 1.0.16+nmu3 [207 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main dh-apparmor all 2.8.96~2541-0ubuntu1 [11.8 kB] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main debhelper all 9.20140613ubuntu1 [606 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/main help2man armhf 1.45.1 [60.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/main zlib1g-dev armhf 1:1.2.8.dfsg-1ubuntu1 [176 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic/universe libjsoncpp-dev armhf 0.6.0~rc2-3ubuntu1 [189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 9582 kB in 2s (4238 kB/s) Selecting previously unselected package libexpat1:armhf. (Reading database ... 11727 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-6_armhf.deb ... Unpacking libexpat1:armhf (2.1.0-6) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../liblocale-gettext-perl_1.05-8_armhf.deb ... Unpacking liblocale-gettext-perl (1.05-8) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../libmagic1_1%3a5.18-1ubuntu1_armhf.deb ... Unpacking libmagic1:armhf (1:5.18-1ubuntu1) ... Selecting previously unselected package libasprintf0c2:armhf. Preparing to unpack .../libasprintf0c2_0.18.3.2-1ubuntu1_armhf.deb ... Unpacking libasprintf0c2:armhf (0.18.3.2-1ubuntu1) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../libglib2.0-0_2.41.1-2_armhf.deb ... Unpacking libglib2.0-0:armhf (2.41.1-2) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../libpipeline1_1.3.0-1_armhf.deb ... Unpacking libpipeline1:armhf (1.3.0-1) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../libxml2_2.9.1+dfsg1-3ubuntu7_armhf.deb ... Unpacking libxml2:armhf (2.9.1+dfsg1-3ubuntu7) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-6_armhf.deb ... Unpacking groff-base (1.22.2-6) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5ubuntu1_armhf.deb ... Unpacking bsdmainutils (9.0.5ubuntu1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.6.7.1-1_armhf.deb ... Unpacking man-db (2.6.7.1-1) ... Selecting previously unselected package liblzo2-2:armhf. Preparing to unpack .../liblzo2-2_2.06-1.2ubuntu1_armhf.deb ... Unpacking liblzo2-2:armhf (2.06-1.2ubuntu1) ... Selecting previously unselected package libarchive13:armhf. Preparing to unpack .../libarchive13_3.1.2-7ubuntu2_armhf.deb ... Unpacking libarchive13:armhf (3.1.2-7ubuntu2) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../libcroco3_0.6.8-2ubuntu1_armhf.deb ... Unpacking libcroco3:armhf (0.6.8-2ubuntu1) ... Selecting previously unselected package libcurl3:armhf. Preparing to unpack .../libcurl3_7.36.0-2ubuntu2_armhf.deb ... Unpacking libcurl3:armhf (7.36.0-2ubuntu2) ... Selecting previously unselected package libunistring0:armhf. Preparing to unpack .../libunistring0_0.9.3-5ubuntu3_armhf.deb ... Unpacking libunistring0:armhf (0.9.3-5ubuntu3) ... Selecting previously unselected package libjsoncpp0:armhf. Preparing to unpack .../libjsoncpp0_0.6.0~rc2-3ubuntu1_armhf.deb ... Unpacking libjsoncpp0:armhf (0.6.0~rc2-3ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.18-1ubuntu1_armhf.deb ... Unpacking file (1:5.18-1ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.18.3.2-1ubuntu1_armhf.deb ... Unpacking gettext-base (0.18.3.2-1ubuntu1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../cmake-data_2.8.12.2-0ubuntu4_all.deb ... Unpacking cmake-data (2.8.12.2-0ubuntu4) ... Selecting previously unselected package cmake. Preparing to unpack .../cmake_2.8.12.2-0ubuntu4_armhf.deb ... Unpacking cmake (2.8.12.2-0ubuntu4) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../d-shlibs_0.56ubuntu1_all.deb ... Unpacking d-shlibs (0.56ubuntu1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.18.3.2-1ubuntu1_armhf.deb ... Unpacking gettext (0.18.3.2-1ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu3_all.deb ... Unpacking po-debconf (1.0.16+nmu3) ... Selecting previously unselected package dh-apparmor. Preparing to unpack .../dh-apparmor_2.8.96~2541-0ubuntu1_all.deb ... Unpacking dh-apparmor (2.8.96~2541-0ubuntu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20140613ubuntu1_all.deb ... Unpacking debhelper (9.20140613ubuntu1) ... Selecting previously unselected package help2man. Preparing to unpack .../help2man_1.45.1_armhf.deb ... Unpacking help2man (1.45.1) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1ubuntu1_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-1ubuntu1) ... Selecting previously unselected package libjsoncpp-dev:armhf. Preparing to unpack .../libjsoncpp-dev_0.6.0~rc2-3ubuntu1_armhf.deb ... Unpacking libjsoncpp-dev:armhf (0.6.0~rc2-3ubuntu1) ... Setting up libexpat1:armhf (2.1.0-6) ... Setting up liblocale-gettext-perl (1.05-8) ... Setting up libmagic1:armhf (1:5.18-1ubuntu1) ... Setting up libasprintf0c2:armhf (0.18.3.2-1ubuntu1) ... Setting up libglib2.0-0:armhf (2.41.1-2) ... No schema files found: doing nothing. Setting up libpipeline1:armhf (1.3.0-1) ... Setting up libxml2:armhf (2.9.1+dfsg1-3ubuntu7) ... Setting up groff-base (1.22.2-6) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.7.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up liblzo2-2:armhf (2.06-1.2ubuntu1) ... Setting up libarchive13:armhf (3.1.2-7ubuntu2) ... Setting up libcroco3:armhf (0.6.8-2ubuntu1) ... Setting up libcurl3:armhf (7.36.0-2ubuntu2) ... Setting up libunistring0:armhf (0.9.3-5ubuntu3) ... Setting up libjsoncpp0:armhf (0.6.0~rc2-3ubuntu1) ... Setting up file (1:5.18-1ubuntu1) ... Setting up gettext-base (0.18.3.2-1ubuntu1) ... Setting up cmake-data (2.8.12.2-0ubuntu4) ... Setting up cmake (2.8.12.2-0ubuntu4) ... Setting up d-shlibs (0.56ubuntu1) ... Setting up gettext (0.18.3.2-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up dh-apparmor (2.8.96~2541-0ubuntu1) ... Setting up debhelper (9.20140613ubuntu1) ... Setting up help2man (1.45.1) ... Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-1ubuntu1) ... Setting up libjsoncpp-dev:armhf (0.6.0~rc2-3ubuntu1) ... Processing triggers for libc-bin (2.19-4ubuntu1) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-4ubuntu1 make_4.0-8 dpkg-dev_1.17.10ubuntu1 gcc-4.8_4.8.3-4ubuntu2 g++-4.8_4.8.3-4ubuntu2 binutils_2.24.51.20140709-1ubuntu1 libstdc++-4.8-dev_4.8.3-4ubuntu2 libstdc++6_4.9.0-10ubuntu2 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Mon Jun 30 08:03:39 2014 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./bamtools_2.3.0+dfsg-2.dsc dpkg-source: info: extracting bamtools in bamtools-2.3.0+dfsg dpkg-source: info: unpacking bamtools_2.3.0+dfsg.orig.tar.xz dpkg-source: info: unpacking bamtools_2.3.0+dfsg-2.debian.tar.xz dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch dpkg-source: info: applying 0002-support-out-of-source-build.patch dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch dpkg-source: info: applying 0005-Install-libbamtools-to-lib.-Installing-libraries-to-.patch dpkg-buildpackage: source package bamtools dpkg-buildpackage: source version 2.3.0+dfsg-2 dpkg-buildpackage: source distribution unstable dpkg-source --before-build bamtools-2.3.0+dfsg dpkg-buildpackage: host architecture armhf /usr/bin/fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel dh_clean -O--parallel debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel dh_auto_configure -a -O--parallel -- The C compiler identification is GNU 4.8.3 -- The CXX compiler identification is GNU 4.8.3 -- Check for working C compiler: /usr/bin/arm-linux-gnueabihf-gcc -- Check for working C compiler: /usr/bin/arm-linux-gnueabihf-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabihf-g++ -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabihf-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf dh_auto_build -a -O--parallel make[1]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -H/build/buildd/bamtools-2.3.0+dfsg -B/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/depend make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/bamtools-2.3.0+dfsg /build/buildd/bamtools-2.3.0+dfsg/src/api /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/bamtools-2.3.0+dfsg /build/buildd/bamtools-2.3.0+dfsg/src/api /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color= Scanning dependencies of target BamTools-static Scanning dependencies of target BamTools make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 1 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 39 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 2 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 40 [ 4%] [ 4%] [ 4%] [ 4%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamMultiReader.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamAlignment.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamAlignment.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamMultiReader.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 3 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 41 [ 5%] [ 6%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamReader.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamReader.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamReader.cpp Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamReader.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 42 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 4 [ 7%] [ 8%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamWriter.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamWriter.cpp Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamWriter.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 5 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 43 [ 9%] [ 10%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamHeader.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamHeader.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamHeader.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamHeader.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 6 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 44 [ 11%] [ 12%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgram.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamProgram.cpp Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamProgram.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 7 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 45 [ 13%] [ 14%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamProgramChain.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgramChain.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamProgramChain.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 8 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 46 [ 17%] [ 17%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamReadGroup.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamReadGroup.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 47 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 48 [ 18%] [ 19%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequence.cpp.o Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamSequence.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamSequence.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamReadGroupDictionary.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamReadGroupDictionary.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 9 /usr/bin/cmake -E cmake_progress_report 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&& /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamFile_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 21 [ 44%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src 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src/utils/CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/arm-linux-gnueabihf-g++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/utils/bamtools_utilities.cpp Linking CXX static library ../../lib/libbamtools-utils.a cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1 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-D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_revert.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 91 [ 96%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/arm-linux-gnueabihf-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_sort.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 92 [ 97%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/arm-linux-gnueabihf-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_split.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 93 [ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/arm-linux-gnueabihf-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_stats.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 94 [100%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/arm-linux-gnueabihf-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools.cpp Linking CXX executable ../../bin/bamtools cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabihf-g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -o ../../bin/bamtools-2.3.0 -rdynamic ../../lib/libbamtools.so.2.3.0 ../../lib/libbamtools-utils.a -ljsoncpp ../../lib/libbamtools.so.2.3.0 -lz -Wl,-rpath,/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/lib: cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit && /usr/bin/cmake -E cmake_symlink_executable ../../bin/bamtools-2.3.0 ../../bin/bamtools make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 81 82 83 84 85 86 87 88 89 90 91 92 93 94 [100%] Built target bamtools_cmd make[2]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' dh_auto_test -a -O--parallel /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --parallel dh_testroot -a -O--parallel dh_prep -a -O--parallel dh_auto_install -a -O--parallel make[1]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -H/build/buildd/bamtools-2.3.0+dfsg -B/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/bamtools-2.3.0+dfsg /build/buildd/bamtools-2.3.0+dfsg/src/api /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools.dir/build'. make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools-static.dir/build'. make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 [ 80%] [ 80%] Built target BamTools make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend Built target BamTools-static make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/bamtools-2.3.0+dfsg /build/buildd/bamtools-2.3.0+dfsg/src/utils /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'src/utils/CMakeFiles/BamTools-utils.dir/build'. make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 77 78 79 80 [ 85%] Built target BamTools-utils make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' cd /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/bamtools-2.3.0+dfsg /build/buildd/bamtools-2.3.0+dfsg/src/toolkit /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' make[3]: Nothing to be done for 'src/toolkit/CMakeFiles/bamtools_cmd.dir/build'. make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 81 82 83 84 85 86 87 88 89 90 91 92 93 94 [100%] Built target bamtools_cmd make[2]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.3.0 -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.so -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.a -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/bamtools_version.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/bin/bamtools-2.3.0 -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/bin/bamtools -- Removed runtime path from "/build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/bin/bamtools-2.3.0" make[1]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-arm-linux-gnueabihf' debian/rules override_dh_install make[1]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/lib*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libbamtools2.3.0/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/libbamtools.a debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/libbamtools.so debian/libbamtools-dev/usr/lib/arm-linux-gnueabihf mv /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.3.0 debian/libbamtools2.3.0/usr/lib/arm-linux-gnueabihf PKGDEV=libbamtools-dev PKGSHL=libbamtools2.3.0 install -d -m 755 debian/libbamtools-dev/usr/include mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include dh_install # no need to install different versions of bamtools rm -rf debian/bamtools/usr/bin/bamtools mv debian/bamtools/usr/bin/bamtools-[0-9]* debian/bamtools/usr/bin/bamtools make[1]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg' dh_installdocs -a -O--parallel dh_installchangelogs -a -O--parallel dh_installman -a -O--parallel dh_lintian -a -O--parallel dh_perl -a -O--parallel dh_link -a -O--parallel dh_compress -a -O--parallel dh_fixperms -a -O--parallel dh_strip -a -O--parallel dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: bamtools libbamtools-dev libbamtools2.3.0 dh_strip debug symbol extraction: packages to act on: bamtools libbamtools-dev libbamtools2.3.0 dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `bamtools-dbgsym' in `../bamtools-dbgsym_2.3.0+dfsg-2_armhf.ddeb'. Using buildid for compat level >= 9 libbamtools-dev has no unstripped objects, ignoring find: `/build/buildd/bamtools-2.3.0+dfsg/debian/libbamtools-dev-dbgsym': No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /build/buildd/bamtools-2.3.0+dfsg/debian/libbamtools-dev-dbgsym and no dbgdepends, ignoring Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `libbamtools2.3.0-dbgsym' in `../libbamtools2.3.0-dbgsym_2.3.0+dfsg-2_armhf.ddeb'. dh_makeshlibs -a -O--parallel dh_shlibdeps -a -O--parallel dpkg-shlibdeps: warning: debian/bamtools/usr/bin/bamtools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libbamtools2.3.0/usr/lib/arm-linux-gnueabihf/libbamtools.so.2.3.0 found in none of the libraries dh_installdeb -a -O--parallel dh_gencontrol -a -O--parallel dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libbamtools-dev: unused substitution variable ${devlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libbamtools2.3.0: unused substitution variable ${misc:Pre-Depends} dh_md5sums -a -O--parallel dh_builddeb -a -O--parallel INFO: pkgstriptranslations version 121 pkgstriptranslations: processing bamtools (in debian/bamtools); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/bamtools/DEBIAN/control, package bamtools, directory debian/bamtools Searching for duplicated docs in dependency libbamtools2.3.0... symlinking changelog.Debian.gz in bamtools to file in libbamtools2.3.0 pkgstripfiles: PNG optimization for package bamtools took 0 s dpkg-deb: warning: 'debian/bamtools/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `bamtools' in `../bamtools_2.3.0+dfsg-2_armhf.deb'. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing libbamtools-dev (in debian/libbamtools-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbamtools-dev/DEBIAN/control, package libbamtools-dev, directory debian/libbamtools-dev Searching for duplicated docs in dependency libbamtools2.3.0... symlinking changelog.Debian.gz in libbamtools-dev to file in libbamtools2.3.0 pkgstripfiles: PNG optimization for package libbamtools-dev took 0 s dpkg-deb: warning: 'debian/libbamtools-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libbamtools-dev' in `../libbamtools-dev_2.3.0+dfsg-2_armhf.deb'. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing libbamtools2.3.0 (in debian/libbamtools2.3.0); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbamtools2.3.0/DEBIAN/control, package libbamtools2.3.0, directory debian/libbamtools2.3.0 pkgstripfiles: PNG optimization for package libbamtools2.3.0 took 0 s dpkg-deb: warning: 'debian/libbamtools2.3.0/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libbamtools2.3.0' in `../libbamtools2.3.0_2.3.0+dfsg-2_armhf.deb'. dpkg-genchanges -B -mUbuntu/armhf Build Daemon >../bamtools_2.3.0+dfsg-2_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build bamtools-2.3.0+dfsg dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20140710-1415 Publishing debug debs. chroot-autobuild/build/buildd/bamtools_2.3.0+dfsg-2_armhf.deb: new debian package, version 2.0. size 158916 bytes: control archive= 1379 bytes. 1862 bytes, 38 lines control 256 bytes, 4 lines md5sums Package: bamtools Version: 2.3.0+dfsg-2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 426 Depends: libbamtools2.3.0, libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libjsoncpp0 (>= 0.6.0~rc2), libstdc++6 (>= 4.4.0) Section: science Priority: optional Homepage: https://github.com/pezmaster31/bamtools/wiki Description: toolkit for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the bamtools command-line toolkit . Available bamtools commands: convert Converts between BAM and a number of other formats count Prints number of alignments in BAM file(s) coverage Prints coverage statistics from the input BAM file filter Filters BAM file(s) by user-specified criteria header Prints BAM header information index Generates index for BAM file merge Merge multiple BAM files into single file random Select random alignments from existing BAM file(s), intended more as a testing tool. resolve Resolves paired-end reads (marking the IsProperPair flag as needed) revert Removes duplicate marks and restores original base qualities sort Sorts the BAM file according to some criteria split Splits a BAM file on user-specified property, creating a new BAM output file for each value found stats Prints some basic statistics from input BAM file(s) chroot-autobuild/build/buildd/libbamtools-dev_2.3.0+dfsg-2_armhf.deb: new debian package, version 2.0. size 189134 bytes: control archive= 1521 bytes. 922 bytes, 22 lines control 1714 bytes, 23 lines md5sums Package: libbamtools-dev Source: bamtools Version: 2.3.0+dfsg-2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 965 Depends: libbamtools2.3.0 (= 2.3.0+dfsg-2) Section: libdevel Priority: optional Homepage: https://github.com/pezmaster31/bamtools/wiki Description: C++ API for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the developers API package chroot-autobuild/build/buildd/libbamtools2.3.0_2.3.0+dfsg-2_armhf.deb: new debian package, version 2.0. size 138656 bytes: control archive= 1163 bytes. 969 bytes, 22 lines control 243 bytes, 3 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 35 bytes, 1 lines shlibs Package: libbamtools2.3.0 Source: bamtools Version: 2.3.0+dfsg-2 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 369 Depends: libc6 (>= 2.15), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: https://github.com/pezmaster31/bamtools/wiki Description: dynnamic library for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the runtime library chroot-autobuild/build/buildd/bamtools_2.3.0+dfsg-2_armhf.deb: drwxr-xr-x root/root 0 2014-07-10 14:15 ./ drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/ drwxr-xr-x root/root 0 2014-07-10 14:15 ./usr/bin/ -rwxr-xr-x root/root 387700 2014-07-10 14:15 ./usr/bin/bamtools drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/share/ drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/share/lintian/ drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 79 2014-06-30 08:01 ./usr/share/lintian/overrides/bamtools drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-07-10 14:15 ./usr/share/doc/bamtools/ -rw-r--r-- root/root 1575 2014-06-30 08:01 ./usr/share/doc/bamtools/copyright drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/share/man/ drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/share/man/man1/ -rw-r--r-- root/root 792 2014-07-10 14:14 ./usr/share/man/man1/bamtools.1.gz lrwxrwxrwx root/root 0 2014-07-10 14:15 ./usr/share/doc/bamtools/changelog.Debian.gz -> ../libbamtools2.3.0/changelog.Debian.gz chroot-autobuild/build/buildd/libbamtools-dev_2.3.0+dfsg-2_armhf.deb: drwxr-xr-x root/root 0 2014-07-10 14:15 ./ drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/ drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/lib/ drwxr-xr-x root/root 0 2014-07-10 14:15 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 825932 2014-07-10 14:15 ./usr/lib/arm-linux-gnueabihf/libbamtools.a drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/include/ drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/include/bamtools/ drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/include/bamtools/shared/ -rw-r--r-- root/root 2790 2013-07-24 20:24 ./usr/include/bamtools/shared/bamtools_global.h drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/include/bamtools/api/ -rw-r--r-- root/root 14569 2013-07-24 20:24 ./usr/include/bamtools/api/BamAux.h -rw-r--r-- root/root 4285 2013-07-24 20:24 ./usr/include/bamtools/api/BamReader.h -rw-r--r-- root/root 847 2013-07-24 20:24 ./usr/include/bamtools/api/BamAlgorithms.h -rw-r--r-- root/root 2853 2013-07-24 20:24 ./usr/include/bamtools/api/SamHeader.h -rw-r--r-- root/root 3127 2013-07-24 20:24 ./usr/include/bamtools/api/SamProgramChain.h -rw-r--r-- root/root 2207 2013-07-24 20:24 ./usr/include/bamtools/api/BamWriter.h -rw-r--r-- root/root 4676 2013-07-24 20:24 ./usr/include/bamtools/api/BamMultiReader.h -rw-r--r-- root/root 3281 2013-07-24 20:24 ./usr/include/bamtools/api/SamReadGroupDictionary.h -rw-r--r-- root/root 757 2013-07-24 20:24 ./usr/include/bamtools/api/api_global.h -rw-r--r-- root/root 23763 2013-07-24 20:24 ./usr/include/bamtools/api/BamAlignment.h -rw-r--r-- root/root 3725 2013-07-24 20:24 ./usr/include/bamtools/api/SamConstants.h -rw-r--r-- root/root 2454 2013-07-24 20:24 ./usr/include/bamtools/api/SamSequence.h -rw-r--r-- root/root 3248 2013-07-24 20:24 ./usr/include/bamtools/api/SamSequenceDictionary.h -rw-r--r-- root/root 3022 2013-07-24 20:24 ./usr/include/bamtools/api/IBamIODevice.h -rw-r--r-- root/root 3336 2013-07-24 20:24 ./usr/include/bamtools/api/SamReadGroup.h -rw-r--r-- root/root 2294 2013-07-24 20:24 ./usr/include/bamtools/api/SamProgram.h drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/include/bamtools/api/algorithms/ -rw-r--r-- root/root 12112 2013-07-24 20:24 ./usr/include/bamtools/api/algorithms/Sort.h -rw-r--r-- root/root 9682 2013-07-24 20:24 ./usr/include/bamtools/api/BamConstants.h -rw-r--r-- root/root 2885 2013-07-24 20:24 ./usr/include/bamtools/api/BamIndex.h -rw-r--r-- root/root 852 2014-07-10 14:12 ./usr/include/bamtools/bamtools_version.h drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/share/ drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-07-10 14:15 ./usr/share/doc/libbamtools-dev/ -rw-r--r-- root/root 1575 2014-06-30 08:01 ./usr/share/doc/libbamtools-dev/copyright lrwxrwxrwx root/root 0 2014-07-10 14:14 ./usr/lib/arm-linux-gnueabihf/libbamtools.so -> libbamtools.so.2.3.0 lrwxrwxrwx root/root 0 2014-07-10 14:15 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz -> ../libbamtools2.3.0/changelog.Debian.gz chroot-autobuild/build/buildd/libbamtools2.3.0_2.3.0+dfsg-2_armhf.deb: drwxr-xr-x root/root 0 2014-07-10 14:15 ./ drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/ drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/lib/ drwxr-xr-x root/root 0 2014-07-10 14:15 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 342140 2014-07-10 14:15 ./usr/lib/arm-linux-gnueabihf/libbamtools.so.2.3.0 drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/share/ drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-07-10 14:14 ./usr/share/doc/libbamtools2.3.0/ -rw-r--r-- root/root 247 2014-06-30 08:01 ./usr/share/doc/libbamtools2.3.0/changelog.Debian.gz -rw-r--r-- root/root 1575 2014-06-30 08:01 ./usr/share/doc/libbamtools2.3.0/copyright bamtools_2.3.0+dfsg-2_armhf.changes: Format: 1.8 Date: Mon, 30 Jun 2014 09:50:50 +0200 Source: bamtools Binary: bamtools libbamtools-dev libbamtools2.3.0 Architecture: armhf Version: 2.3.0+dfsg-2 Distribution: utopic-proposed Urgency: medium Maintainer: Ubuntu/armhf Build Daemon Changed-By: Andreas Tille Description: bamtools - toolkit for manipulating BAM (genome alignment) files libbamtools-dev - C++ API for manipulating BAM (genome alignment) files libbamtools2.3.0 - dynnamic library for manipulating BAM (genome alignment) files Closes: 753210 Changes: bamtools (2.3.0+dfsg-2) unstable; urgency=medium . * Drop d-shlibs patch and add versioned Build-Depends for d-shlibs Closes: #753210 Checksums-Sha1: 14a8adbab6195431916714d853592699c9840309 158916 bamtools_2.3.0+dfsg-2_armhf.deb 3005c08a9fafeb54e2b2dbec9a9825ee7682fa51 189134 libbamtools-dev_2.3.0+dfsg-2_armhf.deb 4d8ed062614fae6c2b1d9d0312e5b5f5bc850f5b 138656 libbamtools2.3.0_2.3.0+dfsg-2_armhf.deb Checksums-Sha256: 5c080be6957c1e1d1ebdb1e7b3389519240119e7b1cd96dd40063dc972dc600d 158916 bamtools_2.3.0+dfsg-2_armhf.deb 534a4d41464b2552426d865e2b3b5ed48d821310f3dd0ff709148efc95ad0cf2 189134 libbamtools-dev_2.3.0+dfsg-2_armhf.deb 6b42c1af7816a3c19854bc4e7e8448fca1f4a33acb143f72e6d01c24f426e71d 138656 libbamtools2.3.0_2.3.0+dfsg-2_armhf.deb Files: 5ab4d60fc8f6f0d5555fabd8077675f3 158916 science optional bamtools_2.3.0+dfsg-2_armhf.deb d5488fdcd335f5e7a2172acc20474796 189134 libdevel optional libbamtools-dev_2.3.0+dfsg-2_armhf.deb 692312f6c741752c462c14bf8a7e5ef0 138656 libs optional libbamtools2.3.0_2.3.0+dfsg-2_armhf.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140710-1415 Build needed 00:03:02, 63840k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6143574'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6143574/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6143574'] Unmounting chroot for build PACKAGEBUILD-6143574... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6143574'] Removing build PACKAGEBUILD-6143574