RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux allspice 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Buildd toolchain package versions: launchpad-buildd_124~0.IS.08.04 python-lpbuildd_124~0.IS.08.04 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.5. Syncing the system clock with the buildd NTP service... 10 Jul 14:08:56 ntpdate[17817]: adjust time server 10.211.37.1 offset -0.000316 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-6143572', '/home/buildd/filecache-default/e89b6bc831aace6553dde664832b8921d9d74e63'] Unpacking chroot for build PACKAGEBUILD-6143572 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-6143572'] Mounting chroot for build PACKAGEBUILD-6143572 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-6143572', 'deb http://ftpmaster.internal/ubuntu utopic main universe', 'deb http://ftpmaster.internal/ubuntu utopic-security main universe', 'deb http://ftpmaster.internal/ubuntu utopic-updates main universe', 'deb http://ftpmaster.internal/ubuntu utopic-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-6143572 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-6143572', 'amd64'] Updating debian chroot for build PACKAGEBUILD-6143572 Ign http://ftpmaster.internal utopic InRelease Ign http://ftpmaster.internal utopic-security InRelease Ign http://ftpmaster.internal utopic-updates InRelease Ign http://ftpmaster.internal utopic-proposed InRelease Get:1 http://ftpmaster.internal utopic Release.gpg [933 B] Ign http://archive-team.internal utopic InRelease Ign http://archive-team.internal utopic Release.gpg Get:2 http://archive-team.internal utopic Release [730 B] Get:3 http://archive-team.internal utopic/main amd64 Packages Ign http://archive-team.internal utopic/main Translation-en Get:4 http://ftpmaster.internal utopic-security Release.gpg [933 B] Get:5 http://ftpmaster.internal utopic-updates Release.gpg [933 B] Get:6 http://ftpmaster.internal utopic-proposed Release.gpg [933 B] Get:7 http://ftpmaster.internal utopic Release [58.5 kB] Get:8 http://ftpmaster.internal utopic-security Release [58.5 kB] Get:9 http://ftpmaster.internal utopic-updates Release [58.5 kB] Get:10 http://ftpmaster.internal utopic-proposed Release [58.5 kB] Get:11 http://ftpmaster.internal utopic/main amd64 Packages [1372 kB] Get:12 http://ftpmaster.internal utopic/universe amd64 Packages [6089 kB] Get:13 http://ftpmaster.internal utopic/main Translation-en [771 kB] Get:14 http://ftpmaster.internal utopic/universe Translation-en [4227 kB] Get:15 http://ftpmaster.internal utopic-security/main amd64 Packages [14 B] Get:16 http://ftpmaster.internal utopic-security/universe amd64 Packages [14 B] Get:17 http://ftpmaster.internal utopic-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal utopic-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal utopic-updates/main amd64 Packages [14 B] Get:20 http://ftpmaster.internal utopic-updates/universe amd64 Packages [14 B] Get:21 http://ftpmaster.internal utopic-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal utopic-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal utopic-proposed/main amd64 Packages [53.9 kB] Get:24 http://ftpmaster.internal utopic-proposed/universe amd64 Packages [250 kB] Get:25 http://ftpmaster.internal utopic-proposed/main Translation-en [28.8 kB] Get:26 http://ftpmaster.internal utopic-proposed/universe Translation-en [149 kB] Fetched 13.2 MB in 4s (2938 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgnutls28 Use 'apt-get autoremove' to remove it. The following NEW packages will be installed: init-system-helpers libgnutls-deb0-28 The following packages will be upgraded: apt apt-transport-https bash binutils bsdutils busybox-initramfs bzip2 ca-certificates cpp cpp-4.8 dpkg dpkg-dev e2fslibs e2fsprogs fakeroot findutils g++ g++-4.8 gcc gcc-4.8 gcc-4.8-base gcc-4.9-base gnupg gpgv hostname ifupdown initramfs-tools initramfs-tools-bin initscripts iproute2 kmod libapt-pkg4.12 libasan0 libasn1-8-heimdal libatomic1 libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcgmanager0 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdpkg-perl libdrm2 libfakeroot libffi6 libgcc-4.8-dev libgcc1 libgmp10 libgnutls26 libgnutls28 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libisl10 libitm1 libkmod2 libkrb5-26-heimdal libmount1 libnih-dbus1 libnih1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libplymouth2 libpng12-0 libprocps3 libquadmath0 libroken18-heimdal libsasl2-2 libsasl2-modules-db libselinux1 libsemanage-common libsemanage1 libsepol1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-4.8-dev libstdc++6 libtasn1-6 libtsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base make module-init-tools mount mountall multiarch-support openssl optipng passwd perl perl-base perl-modules plymouth procps sysv-rc sysvinit-utils tzdata udev upstart util-linux 116 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 55.8 MB of archives. After this operation, 2270 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main bash amd64 4.3-7ubuntu3 [576 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main dpkg amd64 1.17.10ubuntu1 [2008 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libc-bin amd64 2.19-4ubuntu1 [1169 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main upstart amd64 1.12.1-0ubuntu11 [390 kB] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main lsb-base all 4.1+Debian11ubuntu8 [13.1 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main sysvinit-utils amd64 2.88dsf-41ubuntu16 [51.5 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main init-system-helpers all 1.19 [12.5 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main plymouth amd64 0.8.8-0ubuntu18 [101 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main libplymouth2 amd64 0.8.8-0ubuntu18 [77.3 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools-bin amd64 0.103ubuntu7 [9038 B] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main initramfs-tools all 0.103ubuntu7 [44.6 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main mountall amd64 2.54 [55.7 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main initscripts amd64 2.88dsf-41ubuntu16 [35.2 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic/main sysv-rc all 2.88dsf-41ubuntu16 [37.8 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main libselinux1 amd64 2.3-1 [58.7 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic-proposed/main perl-modules all 5.18.2-6 [2696 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic-proposed/main perl amd64 5.18.2-6 [2634 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic-proposed/main perl-base amd64 5.18.2-6 [1148 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main bzip2 amd64 1.0.6-5ubuntu4 [32.6 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main libbz2-1.0 amd64 1.0.6-5ubuntu4 [30.3 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic/main libpam0g amd64 1.1.8-3ubuntu1 [57.9 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage-common all 2.3-1 [6278 B] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main libsemanage1 amd64 2.3-1 [70.0 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main libsepol1 amd64 2.3-1 [108 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules-bin amd64 1.1.8-3ubuntu1 [31.1 kB] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main libpam-modules amd64 1.1.8-3ubuntu1 [236 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/main passwd amd64 1:4.1.5.1-1.1ubuntu1 [755 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/main libuuid1 amd64 2.20.1-5.1ubuntu21 [11.0 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic/main libblkid1 amd64 2.20.1-5.1ubuntu21 [62.9 kB] Get:30 http://ftpmaster.internal/ubuntu/ utopic/main libdbus-1-3 amd64 1.6.18-0ubuntu9 [132 kB] Get:31 http://ftpmaster.internal/ubuntu/ utopic/main libcgmanager0 amd64 0.26-0ubuntu4 [28.7 kB] Get:32 http://ftpmaster.internal/ubuntu/ utopic/main libkmod2 amd64 18-1ubuntu1 [38.0 kB] Get:33 http://ftpmaster.internal/ubuntu/ utopic/main libnih-dbus1 amd64 1.0.3-4ubuntu26 [14.3 kB] Get:34 http://ftpmaster.internal/ubuntu/ utopic/main libnih1 amd64 1.0.3-4ubuntu26 [48.2 kB] Get:35 http://ftpmaster.internal/ubuntu/ utopic/main tzdata all 2014e-1 [190 kB] Get:36 http://ftpmaster.internal/ubuntu/ utopic/main util-linux amd64 2.20.1-5.1ubuntu21 [458 kB] Get:37 http://ftpmaster.internal/ubuntu/ utopic/main libprocps3 amd64 1:3.3.9-1ubuntu5 [31.6 kB] Get:38 http://ftpmaster.internal/ubuntu/ utopic/main procps amd64 1:3.3.9-1ubuntu5 [210 kB] Get:39 http://ftpmaster.internal/ubuntu/ utopic/main udev amd64 204-12ubuntu1 [734 kB] Get:40 http://ftpmaster.internal/ubuntu/ utopic/main libudev1 amd64 204-12ubuntu1 [34.3 kB] Get:41 http://ftpmaster.internal/ubuntu/ utopic/main busybox-initramfs amd64 1:1.22.0-6ubuntu1 [174 kB] Get:42 http://ftpmaster.internal/ubuntu/ utopic/main kmod amd64 18-1ubuntu1 [84.8 kB] Get:43 http://ftpmaster.internal/ubuntu/ utopic/main module-init-tools all 18-1ubuntu1 [2084 B] Get:44 http://ftpmaster.internal/ubuntu/ utopic/main findutils amd64 4.4.2-9 [273 kB] Get:45 http://ftpmaster.internal/ubuntu/ utopic/main libdrm2 amd64 2.4.54-1 [23.0 kB] Get:46 http://ftpmaster.internal/ubuntu/ utopic/main libpng12-0 amd64 1.2.50-1ubuntu3 [118 kB] Get:47 http://ftpmaster.internal/ubuntu/ utopic/main mount amd64 2.20.1-5.1ubuntu21 [115 kB] Get:48 http://ftpmaster.internal/ubuntu/ utopic/main iproute2 amd64 3.15.0-2 [415 kB] Get:49 http://ftpmaster.internal/ubuntu/ utopic/main ifupdown amd64 0.7.48.1ubuntu4 [50.8 kB] Get:50 http://ftpmaster.internal/ubuntu/ utopic/main libc6-dev amd64 2.19-4ubuntu1 [1914 kB] Get:51 http://ftpmaster.internal/ubuntu/ utopic/main libc-dev-bin amd64 2.19-4ubuntu1 [70.2 kB] Get:52 http://ftpmaster.internal/ubuntu/ utopic/main linux-libc-dev amd64 3.15.0-6.11 [761 kB] Get:53 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libitm1 amd64 4.9.0-10ubuntu2 [30.0 kB] Get:54 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libgomp1 amd64 4.9.0-10ubuntu2 [37.0 kB] Get:55 http://ftpmaster.internal/ubuntu/ utopic-proposed/main gcc-4.9-base amd64 4.9.0-10ubuntu2 [15.4 kB] Get:56 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libgcc1 amd64 1:4.9.0-10ubuntu2 [39.6 kB] Get:57 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libtsan0 amd64 4.9.0-10ubuntu2 [217 kB] Get:58 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libquadmath0 amd64 4.9.0-10ubuntu2 [129 kB] Get:59 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libatomic1 amd64 4.9.0-10ubuntu2 [9262 B] Get:60 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libstdc++6 amd64 4.9.0-10ubuntu2 [276 kB] Get:61 http://ftpmaster.internal/ubuntu/ utopic/main libc6 amd64 2.19-4ubuntu1 [4749 kB] Get:62 http://ftpmaster.internal/ubuntu/ utopic/main e2fslibs amd64 1.42.10-1.1ubuntu1 [185 kB] Get:63 http://ftpmaster.internal/ubuntu/ utopic/main e2fsprogs amd64 1.42.10-1.1ubuntu1 [679 kB] Get:64 http://ftpmaster.internal/ubuntu/ utopic/main hostname amd64 3.15ubuntu2 [11.7 kB] Get:65 http://ftpmaster.internal/ubuntu/ utopic/main login amd64 1:4.1.5.1-1.1ubuntu1 [301 kB] Get:66 http://ftpmaster.internal/ubuntu/ utopic/main libapt-pkg4.12 amd64 1.0.4ubuntu5 [646 kB] Get:67 http://ftpmaster.internal/ubuntu/ utopic/main libusb-0.1-4 amd64 2:0.1.12-24 [16.2 kB] Get:68 http://ftpmaster.internal/ubuntu/ utopic/main gpgv amd64 1.4.16-1.2ubuntu1 [160 kB] Get:69 http://ftpmaster.internal/ubuntu/ utopic/main gnupg amd64 1.4.16-1.2ubuntu1 [610 kB] Get:70 http://ftpmaster.internal/ubuntu/ utopic/main apt amd64 1.0.4ubuntu5 [960 kB] Get:71 http://ftpmaster.internal/ubuntu/ utopic/main bsdutils amd64 1:2.20.1-5.1ubuntu21 [33.9 kB] Get:72 http://ftpmaster.internal/ubuntu/ utopic/main libcomerr2 amd64 1.42.10-1.1ubuntu1 [63.6 kB] Get:73 http://ftpmaster.internal/ubuntu/ utopic/main libdebconfclient0 amd64 0.191ubuntu1 [6208 B] Get:74 http://ftpmaster.internal/ubuntu/ utopic/main libmount1 amd64 2.20.1-5.1ubuntu21 [60.6 kB] Get:75 http://ftpmaster.internal/ubuntu/ utopic/main libss2 amd64 1.42.10-1.1ubuntu1 [67.8 kB] Get:76 http://ftpmaster.internal/ubuntu/ utopic/main libffi6 amd64 3.1-2 [17.4 kB] Get:77 http://ftpmaster.internal/ubuntu/ utopic/main libgmp10 amd64 2:6.0.0+dfsg-4 [223 kB] Get:78 http://ftpmaster.internal/ubuntu/ utopic/main libtasn1-6 amd64 4.0-2 [41.3 kB] Get:79 http://ftpmaster.internal/ubuntu/ utopic/main libgnutls28 amd64 3.2.15-1 [486 kB] Get:80 http://ftpmaster.internal/ubuntu/ utopic/main libsqlite3-0 amd64 3.8.5-2ubuntu1 [351 kB] Get:81 http://ftpmaster.internal/ubuntu/ utopic/main libssl1.0.0 amd64 1.0.1f-1ubuntu6 [832 kB] Get:82 http://ftpmaster.internal/ubuntu/ utopic/main libroken18-heimdal amd64 1.6~rc2+dfsg-7 [40.8 kB] Get:83 http://ftpmaster.internal/ubuntu/ utopic/main libasn1-8-heimdal amd64 1.6~rc2+dfsg-7 [173 kB] Get:84 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libgnutls-deb0-28 amd64 3.2.15-2 [486 kB] Get:85 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libcurl3-gnutls amd64 7.36.0-2ubuntu2 [165 kB] Get:86 http://ftpmaster.internal/ubuntu/ utopic/main libgnutls26 amd64 2.12.23-15ubuntu2 [393 kB] Get:87 http://ftpmaster.internal/ubuntu/ utopic/main libhcrypto4-heimdal amd64 1.6~rc2+dfsg-7 [85.4 kB] Get:88 http://ftpmaster.internal/ubuntu/ utopic/main libheimbase1-heimdal amd64 1.6~rc2+dfsg-7 [29.7 kB] Get:89 http://ftpmaster.internal/ubuntu/ utopic/main libwind0-heimdal amd64 1.6~rc2+dfsg-7 [48.0 kB] Get:90 http://ftpmaster.internal/ubuntu/ utopic/main libhx509-5-heimdal amd64 1.6~rc2+dfsg-7 [105 kB] Get:91 http://ftpmaster.internal/ubuntu/ utopic/main libkrb5-26-heimdal amd64 1.6~rc2+dfsg-7 [199 kB] Get:92 http://ftpmaster.internal/ubuntu/ utopic/main libheimntlm0-heimdal amd64 1.6~rc2+dfsg-7 [15.1 kB] Get:93 http://ftpmaster.internal/ubuntu/ utopic/main libgssapi3-heimdal amd64 1.6~rc2+dfsg-7 [92.7 kB] Get:94 http://ftpmaster.internal/ubuntu/ utopic/main libsasl2-modules-db amd64 2.1.26.dfsg1-10 [14.3 kB] Get:95 http://ftpmaster.internal/ubuntu/ utopic/main libsasl2-2 amd64 2.1.26.dfsg1-10 [48.9 kB] Get:96 http://ftpmaster.internal/ubuntu/ utopic/main libisl10 amd64 0.12.2-2 [423 kB] Get:97 http://ftpmaster.internal/ubuntu/ utopic/main g++-4.8 amd64 4.8.3-4ubuntu2 [7224 kB] Get:98 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8 amd64 4.8.3-4ubuntu2 [5039 kB] Get:99 http://ftpmaster.internal/ubuntu/ utopic/main cpp-4.8 amd64 4.8.3-4ubuntu2 [4592 kB] Get:100 http://ftpmaster.internal/ubuntu/ utopic-proposed/main binutils amd64 2.24.51.20140709-1ubuntu1 [2098 kB] Get:101 http://ftpmaster.internal/ubuntu/ utopic/main libstdc++-4.8-dev amd64 4.8.3-4ubuntu2 [1056 kB] Get:102 http://ftpmaster.internal/ubuntu/ utopic/main libgcc-4.8-dev amd64 4.8.3-4ubuntu2 [1686 kB] Get:103 http://ftpmaster.internal/ubuntu/ utopic/main libasan0 amd64 4.8.3-4ubuntu2 [63.3 kB] Get:104 http://ftpmaster.internal/ubuntu/ utopic/main gcc-4.8-base amd64 4.8.3-4ubuntu2 [14.9 kB] Get:105 http://ftpmaster.internal/ubuntu/ utopic/main libpam-runtime all 1.1.8-3ubuntu1 [39.7 kB] Get:106 http://ftpmaster.internal/ubuntu/ utopic/main multiarch-support amd64 2.19-4ubuntu1 [4548 B] Get:107 http://ftpmaster.internal/ubuntu/ utopic/main apt-transport-https amd64 1.0.4ubuntu5 [25.3 kB] Get:108 http://ftpmaster.internal/ubuntu/ utopic/main openssl amd64 1.0.1f-1ubuntu6 [489 kB] Get:109 http://ftpmaster.internal/ubuntu/ utopic/main ca-certificates all 20140325 [184 kB] Get:110 http://ftpmaster.internal/ubuntu/ utopic/main cpp amd64 4:4.9.0-3ubuntu5 [27.7 kB] Get:111 http://ftpmaster.internal/ubuntu/ utopic/main dpkg-dev all 1.17.10ubuntu1 [714 kB] Get:112 http://ftpmaster.internal/ubuntu/ utopic/main libdpkg-perl all 1.17.10ubuntu1 [181 kB] Get:113 http://ftpmaster.internal/ubuntu/ utopic/main make amd64 4.0-8 [148 kB] Get:114 http://ftpmaster.internal/ubuntu/ utopic/main libfakeroot amd64 1.20-3ubuntu3 [25.4 kB] Get:115 http://ftpmaster.internal/ubuntu/ utopic/main fakeroot amd64 1.20-3ubuntu3 [55.4 kB] Get:116 http://ftpmaster.internal/ubuntu/ utopic/main gcc amd64 4:4.9.0-3ubuntu5 [5306 B] Get:117 http://ftpmaster.internal/ubuntu/ utopic/main g++ amd64 4:4.9.0-3ubuntu5 [1604 B] Get:118 http://ftpmaster.internal/ubuntu/ utopic/main optipng amd64 0.7.5-1 [82.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 55.8 MB in 4s (13.0 MB/s) (Reading database ... 11820 files and directories currently installed.) Preparing to unpack .../bash_4.3-7ubuntu3_amd64.deb ... Unpacking bash (4.3-7ubuntu3) over (4.3-7ubuntu1) ... Setting up bash (4.3-7ubuntu3) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 11820 files and directories currently installed.) Preparing to unpack .../dpkg_1.17.10ubuntu1_amd64.deb ... Unpacking dpkg (1.17.10ubuntu1) over (1.17.9ubuntu1) ... Setting up dpkg (1.17.10ubuntu1) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... 11820 files and directories currently installed.) Preparing to unpack .../libc-bin_2.19-4ubuntu1_amd64.deb ... Unpacking libc-bin (2.19-4ubuntu1) over (2.19-0ubuntu6) ... Preparing to unpack .../libc6_2.19-4ubuntu1_amd64.deb ... Unpacking libc6:amd64 (2.19-4ubuntu1) over (2.19-0ubuntu6) ... Preparing to unpack .../libgcc1_1%3a4.9.0-10ubuntu2_amd64.deb ... 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Unpacking g++ (4:4.9.0-3ubuntu5) over (4:4.8.2-1ubuntu6) ... Preparing to unpack .../optipng_0.7.5-1_amd64.deb ... Unpacking optipng (0.7.5-1) over (0.6.4-1build1) ... Setting up libdbus-1-3:amd64 (1.6.18-0ubuntu9) ... Setting up libnih1:amd64 (1.0.3-4ubuntu26) ... Setting up libnih-dbus1:amd64 (1.0.3-4ubuntu26) ... Setting up libcgmanager0:amd64 (0.26-0ubuntu4) ... Setting up libudev1:amd64 (204-12ubuntu1) ... Setting up libkmod2:amd64 (18-1ubuntu1) ... Setting up libprocps3:amd64 (1:3.3.9-1ubuntu5) ... Setting up initramfs-tools-bin (0.103ubuntu7) ... Setting up busybox-initramfs (1:1.22.0-6ubuntu1) ... Setting up kmod (18-1ubuntu1) ... update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match kmod Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match kmod Default-Stop values (none) Setting up module-init-tools (18-1ubuntu1) ... Setting up libpng12-0:amd64 (1.2.50-1ubuntu3) ... Setting up libplymouth2:amd64 (0.8.8-0ubuntu18) ... Setting up iproute2 (3.15.0-2) ... Setting up libdrm2:amd64 (2.4.54-1) ... Setting up bzip2 (1.0.6-5ubuntu4) ... Setting up libc-dev-bin (2.19-4ubuntu1) ... Setting up linux-libc-dev:amd64 (3.15.0-6.11) ... Setting up libc6-dev:amd64 (2.19-4ubuntu1) ... Setting up libitm1:amd64 (4.9.0-10ubuntu2) ... Setting up libgomp1:amd64 (4.9.0-10ubuntu2) ... Setting up libtsan0:amd64 (4.9.0-10ubuntu2) ... Setting up libquadmath0:amd64 (4.9.0-10ubuntu2) ... Setting up libatomic1:amd64 (4.9.0-10ubuntu2) ... Setting up libffi6:amd64 (3.1-2) ... Setting up libgmp10:amd64 (2:6.0.0+dfsg-4) ... Setting up libtasn1-6:amd64 (4.0-2) ... Setting up libgnutls28:amd64 (3.2.15-1) ... Setting up libsqlite3-0:amd64 (3.8.5-2ubuntu1) ... Setting up libssl1.0.0:amd64 (1.0.1f-1ubuntu6) ... Setting up libroken18-heimdal:amd64 (1.6~rc2+dfsg-7) ... Setting up libasn1-8-heimdal:amd64 (1.6~rc2+dfsg-7) ... Setting up libgnutls-deb0-28:amd64 (3.2.15-2) ... Setting up libcurl3-gnutls:amd64 (7.36.0-2ubuntu2) ... Setting up libgnutls26:amd64 (2.12.23-15ubuntu2) ... Setting up libhcrypto4-heimdal:amd64 (1.6~rc2+dfsg-7) ... Setting up libheimbase1-heimdal:amd64 (1.6~rc2+dfsg-7) ... Setting up libwind0-heimdal:amd64 (1.6~rc2+dfsg-7) ... Setting up libhx509-5-heimdal:amd64 (1.6~rc2+dfsg-7) ... Setting up libkrb5-26-heimdal:amd64 (1.6~rc2+dfsg-7) ... Setting up libheimntlm0-heimdal:amd64 (1.6~rc2+dfsg-7) ... Setting up libgssapi3-heimdal:amd64 (1.6~rc2+dfsg-7) ... Setting up libsasl2-modules-db:amd64 (2.1.26.dfsg1-10) ... Setting up libsasl2-2:amd64 (2.1.26.dfsg1-10) ... Setting up libisl10:amd64 (0.12.2-2) ... Setting up gcc-4.8-base:amd64 (4.8.3-4ubuntu2) ... Setting up cpp-4.8 (4.8.3-4ubuntu2) ... Setting up binutils (2.24.51.20140709-1ubuntu1) ... Setting up libasan0:amd64 (4.8.3-4ubuntu2) ... Setting up libgcc-4.8-dev:amd64 (4.8.3-4ubuntu2) ... Setting up gcc-4.8 (4.8.3-4ubuntu2) ... Setting up libstdc++-4.8-dev:amd64 (4.8.3-4ubuntu2) ... Setting up g++-4.8 (4.8.3-4ubuntu2) ... Setting up apt-transport-https (1.0.4ubuntu5) ... Setting up openssl (1.0.1f-1ubuntu6) ... Setting up ca-certificates (20140325) ... Setting up cpp (4:4.9.0-3ubuntu5) ... Setting up make (4.0-8) ... Setting up libfakeroot:amd64 (1.20-3ubuntu3) ... Setting up fakeroot (1.20-3ubuntu3) ... Setting up gcc (4:4.9.0-3ubuntu5) ... Setting up g++ (4:4.9.0-3ubuntu5) ... Setting up optipng (0.7.5-1) ... Setting up perl-modules (5.18.2-6) ... Setting up perl (5.18.2-6) ... Setting up init-system-helpers (1.19) ... Setting up mountall (2.54) ... Installing new version of config file /etc/init/mounted-proc.conf ... Setting up initscripts (2.88dsf-41ubuntu16) ... Installing new version of config file /etc/init.d/ondemand ... Setting up procps (1:3.3.9-1ubuntu5) ... Installing new version of config file /etc/init/procps.conf ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libdpkg-perl (1.17.10ubuntu1) ... Setting up dpkg-dev (1.17.10ubuntu1) ... Setting up udev (204-12ubuntu1) ... Installing new version of config file /etc/init/udev-finish.conf ... Installing new version of config file /etc/init.d/udev ... A chroot environment has been detected, udev not started. update-initramfs: deferring update (trigger activated) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match udev Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match udev Default-Stop values (none) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match udev-finish Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match udev-finish Default-Stop values (none) update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match lvm2 Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match lvm2 Default-Stop values (none) Setting up initramfs-tools (0.103ubuntu7) ... update-initramfs: deferring update (trigger activated) Setting up ifupdown (0.7.48.1ubuntu4) ... Installing new version of config file /etc/init/network-interface.conf ... update-rc.d: warning: default start runlevel arguments (2 3 4 5) do not match networking Default-Start values (S) update-rc.d: warning: default stop runlevel arguments (0 1 6) do not match networking Default-Stop values (0 6) Setting up upstart (1.12.1-0ubuntu11) ... Installing new version of config file /etc/cron.daily/upstart ... Installing new version of config file /etc/upstart-xsessions ... Setting up plymouth (0.8.8-0ubuntu18) ... update-initramfs: deferring update (trigger activated) Processing triggers for libc-bin (2.19-4ubuntu1) ... Processing triggers for ca-certificates (20140325) ... Updating certificates in /etc/ssl/certs... 7 added, 3 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Processing triggers for initramfs-tools (0.103ubuntu7) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-6143572', 'amd64', 'utopic-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=utopic-proposed', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'bamtools_2.3.0+dfsg-2.dsc'] Initiating build PACKAGEBUILD-6143572 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-37-generic #58-Ubuntu SMP Thu Jan 24 15:28:10 UTC 2013 x86_64 Automatic build of bamtools_2.3.0+dfsg-2 on allspice by sbuild/amd64 1.170.5 Build started at 20140710-1409 ****************************************************************************** bamtools_2.3.0+dfsg-2.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 9.0.0), d-shlibs (>= 0.56), cmake, libz-dev, libjsoncpp-dev, help2man Checking for already installed source dependencies... debhelper: missing d-shlibs: missing cmake: missing libz-dev: missing libjsoncpp-dev: missing help2man: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper d-shlibs cmake libz-dev libjsoncpp-dev help2man Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libgnutls28 Use 'apt-get autoremove' to remove it. The following extra packages will be installed: bsdmainutils cmake-data dh-apparmor file gettext gettext-base groff-base intltool-debian libarchive13 libasprintf0c2 libcroco3 libcurl3 libexpat1 libglib2.0-0 libjsoncpp0 liblocale-gettext-perl liblzo2-2 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation codeblocks eclipse dh-make apparmor-easyprof gettext-doc groff lrzip less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cmake cmake-data d-shlibs debhelper dh-apparmor file gettext gettext-base groff-base help2man intltool-debian libarchive13 libasprintf0c2 libcroco3 libcurl3 libexpat1 libglib2.0-0 libjsoncpp-dev libjsoncpp0 liblocale-gettext-perl liblzo2-2 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf zlib1g-dev 0 upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 10.5 MB of archives. After this operation, 44.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ utopic/main libexpat1 amd64 2.1.0-6 [71.4 kB] Get:2 http://ftpmaster.internal/ubuntu/ utopic/main liblocale-gettext-perl amd64 1.05-8 [17.8 kB] Get:3 http://ftpmaster.internal/ubuntu/ utopic/main libmagic1 amd64 1:5.18-1ubuntu1 [198 kB] Get:4 http://ftpmaster.internal/ubuntu/ utopic/main libasprintf0c2 amd64 0.18.3.2-1ubuntu1 [6392 B] Get:5 http://ftpmaster.internal/ubuntu/ utopic/main libglib2.0-0 amd64 2.41.1-2 [1066 kB] Get:6 http://ftpmaster.internal/ubuntu/ utopic/main libpipeline1 amd64 1.3.0-1 [24.0 kB] Get:7 http://ftpmaster.internal/ubuntu/ utopic/main libxml2 amd64 2.9.1+dfsg1-3ubuntu7 [573 kB] Get:8 http://ftpmaster.internal/ubuntu/ utopic/main groff-base amd64 1.22.2-6 [1051 kB] Get:9 http://ftpmaster.internal/ubuntu/ utopic/main bsdmainutils amd64 9.0.5ubuntu1 [203 kB] Get:10 http://ftpmaster.internal/ubuntu/ utopic/main man-db amd64 2.6.7.1-1 [858 kB] Get:11 http://ftpmaster.internal/ubuntu/ utopic/main liblzo2-2 amd64 2.06-1.2ubuntu1 [45.9 kB] Get:12 http://ftpmaster.internal/ubuntu/ utopic/main libarchive13 amd64 3.1.2-7ubuntu2 [259 kB] Get:13 http://ftpmaster.internal/ubuntu/ utopic/main libcroco3 amd64 0.6.8-2ubuntu1 [82.4 kB] Get:14 http://ftpmaster.internal/ubuntu/ utopic-proposed/main libcurl3 amd64 7.36.0-2ubuntu2 [173 kB] Get:15 http://ftpmaster.internal/ubuntu/ utopic/main libunistring0 amd64 0.9.3-5ubuntu3 [271 kB] Get:16 http://ftpmaster.internal/ubuntu/ utopic/universe libjsoncpp0 amd64 0.6.0~rc2-3ubuntu1 [56.5 kB] Get:17 http://ftpmaster.internal/ubuntu/ utopic/main file amd64 1:5.18-1ubuntu1 [20.0 kB] Get:18 http://ftpmaster.internal/ubuntu/ utopic/main gettext-base amd64 0.18.3.2-1ubuntu1 [48.5 kB] Get:19 http://ftpmaster.internal/ubuntu/ utopic/main cmake-data all 2.8.12.2-0ubuntu4 [677 kB] Get:20 http://ftpmaster.internal/ubuntu/ utopic/main cmake amd64 2.8.12.2-0ubuntu4 [2629 kB] Get:21 http://ftpmaster.internal/ubuntu/ utopic-proposed/main d-shlibs all 0.56ubuntu1 [10.0 kB] Get:22 http://ftpmaster.internal/ubuntu/ utopic/main gettext amd64 0.18.3.2-1ubuntu1 [831 kB] Get:23 http://ftpmaster.internal/ubuntu/ utopic/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:24 http://ftpmaster.internal/ubuntu/ utopic/main po-debconf all 1.0.16+nmu3 [207 kB] Get:25 http://ftpmaster.internal/ubuntu/ utopic/main dh-apparmor all 2.8.96~2541-0ubuntu1 [11.8 kB] Get:26 http://ftpmaster.internal/ubuntu/ utopic/main debhelper all 9.20140613ubuntu1 [606 kB] Get:27 http://ftpmaster.internal/ubuntu/ utopic/main help2man amd64 1.45.1 [60.4 kB] Get:28 http://ftpmaster.internal/ubuntu/ utopic/main zlib1g-dev amd64 1:1.2.8.dfsg-1ubuntu1 [183 kB] Get:29 http://ftpmaster.internal/ubuntu/ utopic/universe libjsoncpp-dev amd64 0.6.0~rc2-3ubuntu1 [191 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 10.5 MB in 1s (7206 kB/s) Selecting previously unselected package libexpat1:amd64. (Reading database ... 11901 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-6_amd64.deb ... Unpacking libexpat1:amd64 (2.1.0-6) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../liblocale-gettext-perl_1.05-8_amd64.deb ... Unpacking liblocale-gettext-perl (1.05-8) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.18-1ubuntu1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.18-1ubuntu1) ... Selecting previously unselected package libasprintf0c2:amd64. Preparing to unpack .../libasprintf0c2_0.18.3.2-1ubuntu1_amd64.deb ... Unpacking libasprintf0c2:amd64 (0.18.3.2-1ubuntu1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.41.1-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.41.1-2) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.3.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.3.0-1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.1+dfsg1-3ubuntu7_amd64.deb ... Unpacking libxml2:amd64 (2.9.1+dfsg1-3ubuntu7) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.2-6_amd64.deb ... Unpacking groff-base (1.22.2-6) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.5ubuntu1_amd64.deb ... Unpacking bsdmainutils (9.0.5ubuntu1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.6.7.1-1_amd64.deb ... Unpacking man-db (2.6.7.1-1) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../liblzo2-2_2.06-1.2ubuntu1_amd64.deb ... Unpacking liblzo2-2:amd64 (2.06-1.2ubuntu1) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../libarchive13_3.1.2-7ubuntu2_amd64.deb ... Unpacking libarchive13:amd64 (3.1.2-7ubuntu2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../libcroco3_0.6.8-2ubuntu1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.8-2ubuntu1) ... Selecting previously unselected package libcurl3:amd64. Preparing to unpack .../libcurl3_7.36.0-2ubuntu2_amd64.deb ... Unpacking libcurl3:amd64 (7.36.0-2ubuntu2) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.3-5ubuntu3_amd64.deb ... Unpacking libunistring0:amd64 (0.9.3-5ubuntu3) ... Selecting previously unselected package libjsoncpp0:amd64. Preparing to unpack .../libjsoncpp0_0.6.0~rc2-3ubuntu1_amd64.deb ... Unpacking libjsoncpp0:amd64 (0.6.0~rc2-3ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.18-1ubuntu1_amd64.deb ... Unpacking file (1:5.18-1ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.18.3.2-1ubuntu1_amd64.deb ... Unpacking gettext-base (0.18.3.2-1ubuntu1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../cmake-data_2.8.12.2-0ubuntu4_all.deb ... Unpacking cmake-data (2.8.12.2-0ubuntu4) ... Selecting previously unselected package cmake. Preparing to unpack .../cmake_2.8.12.2-0ubuntu4_amd64.deb ... Unpacking cmake (2.8.12.2-0ubuntu4) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../d-shlibs_0.56ubuntu1_all.deb ... Unpacking d-shlibs (0.56ubuntu1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.18.3.2-1ubuntu1_amd64.deb ... Unpacking gettext (0.18.3.2-1ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ... Unpacking intltool-debian (0.35.0+20060710.1) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.16+nmu3_all.deb ... Unpacking po-debconf (1.0.16+nmu3) ... Selecting previously unselected package dh-apparmor. Preparing to unpack .../dh-apparmor_2.8.96~2541-0ubuntu1_all.deb ... Unpacking dh-apparmor (2.8.96~2541-0ubuntu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20140613ubuntu1_all.deb ... Unpacking debhelper (9.20140613ubuntu1) ... Selecting previously unselected package help2man. Preparing to unpack .../help2man_1.45.1_amd64.deb ... Unpacking help2man (1.45.1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-1ubuntu1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.8.dfsg-1ubuntu1) ... Selecting previously unselected package libjsoncpp-dev:amd64. Preparing to unpack .../libjsoncpp-dev_0.6.0~rc2-3ubuntu1_amd64.deb ... Unpacking libjsoncpp-dev:amd64 (0.6.0~rc2-3ubuntu1) ... Setting up libexpat1:amd64 (2.1.0-6) ... Setting up liblocale-gettext-perl (1.05-8) ... Setting up libmagic1:amd64 (1:5.18-1ubuntu1) ... Setting up libasprintf0c2:amd64 (0.18.3.2-1ubuntu1) ... Setting up libglib2.0-0:amd64 (2.41.1-2) ... No schema files found: doing nothing. Setting up libpipeline1:amd64 (1.3.0-1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-3ubuntu7) ... Setting up groff-base (1.22.2-6) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.7.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up liblzo2-2:amd64 (2.06-1.2ubuntu1) ... Setting up libarchive13:amd64 (3.1.2-7ubuntu2) ... Setting up libcroco3:amd64 (0.6.8-2ubuntu1) ... Setting up libcurl3:amd64 (7.36.0-2ubuntu2) ... Setting up libunistring0:amd64 (0.9.3-5ubuntu3) ... Setting up libjsoncpp0:amd64 (0.6.0~rc2-3ubuntu1) ... Setting up file (1:5.18-1ubuntu1) ... Setting up gettext-base (0.18.3.2-1ubuntu1) ... Setting up cmake-data (2.8.12.2-0ubuntu4) ... Setting up cmake (2.8.12.2-0ubuntu4) ... Setting up d-shlibs (0.56ubuntu1) ... Setting up gettext (0.18.3.2-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu3) ... Setting up dh-apparmor (2.8.96~2541-0ubuntu1) ... Setting up debhelper (9.20140613ubuntu1) ... Setting up help2man (1.45.1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-1ubuntu1) ... Setting up libjsoncpp-dev:amd64 (0.6.0~rc2-3ubuntu1) ... Processing triggers for libc-bin (2.19-4ubuntu1) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.19-4ubuntu1 make_4.0-8 dpkg-dev_1.17.10ubuntu1 gcc-4.8_4.8.3-4ubuntu2 g++-4.8_4.8.3-4ubuntu2 binutils_2.24.51.20140709-1ubuntu1 libstdc++-4.8-dev_4.8.3-4ubuntu2 libstdc++6_4.9.0-10ubuntu2 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Mon Jun 30 08:03:39 2014 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./bamtools_2.3.0+dfsg-2.dsc dpkg-source: info: extracting bamtools in bamtools-2.3.0+dfsg dpkg-source: info: unpacking bamtools_2.3.0+dfsg.orig.tar.xz dpkg-source: info: unpacking bamtools_2.3.0+dfsg-2.debian.tar.xz dpkg-source: info: applying 0001-ignore-thirdparty-and-fix-jsoncpp.patch dpkg-source: info: applying 0002-support-out-of-source-build.patch dpkg-source: info: applying 0003-remove-custom-ExportHeader-function-use-install-inst.patch dpkg-source: info: applying 0005-Install-libbamtools-to-lib.-Installing-libraries-to-.patch dpkg-buildpackage: source package bamtools dpkg-buildpackage: source version 2.3.0+dfsg-2 dpkg-buildpackage: source distribution unstable dpkg-source --before-build bamtools-2.3.0+dfsg dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean --parallel dh_testdir -O--parallel dh_auto_clean -O--parallel dh_clean -O--parallel debian/rules build-arch dh build-arch --parallel dh_testdir -a -O--parallel dh_auto_configure -a -O--parallel -- The C compiler identification is GNU 4.8.3 -- The CXX compiler identification is GNU 4.8.3 -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu dh_auto_build -a -O--parallel make[1]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -H/build/buildd/bamtools-2.3.0+dfsg -B/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/depend make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/bamtools-2.3.0+dfsg /build/buildd/bamtools-2.3.0+dfsg/src/api /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/BamTools.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/bamtools-2.3.0+dfsg /build/buildd/bamtools-2.3.0+dfsg/src/api /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api/CMakeFiles/BamTools-static.dir/DependInfo.cmake --color= Scanning dependencies of target BamTools-static Scanning dependencies of target BamTools make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 1 make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 39 /usr/bin/cmake -E cmake_progress_report 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-DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamAlignment.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamAlignment.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamAlignment.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamAlignment.cpp Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamMultiReader.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamHeader.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamHeader.cpp Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamReader.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamReader.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamReader.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamReader.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamReader.cpp Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/BamWriter.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamWriter.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamMultiReader.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamMultiReader.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 6 [ 9%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgram.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgram.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamProgram.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 7 [ 10%] /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 42 Building CXX object src/api/CMakeFiles/BamTools.dir/SamProgramChain.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamProgramChain.cpp [ 11%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/BamWriter.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/BamWriter.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/BamWriter.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 8 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 9 [ 12%] [ 13%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamReadGroupDictionary.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamReadGroup.cpp /usr/bin/cmake -E cmake_progress_report 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-fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequence.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamSequence.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 44 [ 17%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamProgram.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/SamProgram.cpp.o -c 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src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/SamSequenceDictionary.cpp [ 20%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamReadGroup.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src 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src/api/CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/bam/BamMultiReader_p.cpp Building CXX object src/api/CMakeFiles/BamTools-static.dir/SamSequence.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src 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&& /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/index/BamIndexFactory_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/index/BamIndexFactory_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 18 [ 37%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC 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/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 58 [ 40%] [ 41%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/index/BamToolsIndex_p.cpp Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamDeviceFactory_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/index/BamStandardIndex_p.cpp: In member function 'void BamTools::Internal::BamStandardIndex::WriteLinearOffsets(const int&, BamTools::Internal::BaiLinearOffsetVector&)': /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:958:89: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( numBytesWritten != (sizeof(offsetCount) + linearOffsets.size()*sizeof(uint64_t)) ) ^ /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/index/BamStandardIndex_p.cpp: In member function 'void BamTools::Internal::BamStandardIndex::WriteLinearOffsets(const int&, BamTools::Internal::BaiLinearOffsetVector&)': /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/index/BamStandardIndex_p.cpp:958:89: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( numBytesWritten != (sizeof(offsetCount) + linearOffsets.size()*sizeof(uint64_t)) ) ^ /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 59 [ 42%] /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 60 Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o [ 43%] cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFile_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamFile_p.cpp Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamFtp_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamFtp_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 61 [ 44%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamHttp_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 20 /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp: In member function 'bool BamTools::Internal::BamHttp::SendGetRequest(size_t)': /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp:409:62: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( WriteToSocket(requestHeader.c_str(), headerSize) != headerSize ) { ^ /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp: In member function 'bool BamTools::Internal::BamHttp::SendHeadRequest()': /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp:501:62: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( WriteToSocket(requestHeader.c_str(), headerSize) != headerSize ) { ^ [ 45%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamDeviceFactory_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 62 [ 46%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BamPipe_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamPipe_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 21 [ 47%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamFile_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 22 [ 48%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamFtp_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 63 [ 50%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/BgzfStream_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BgzfStream_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 64 [ 51%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/ByteArray_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/ByteArray_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 23 [ 52%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 24 [ 53%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamPipe_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 25 [ 54%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BgzfStream_p.cpp /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp: In member function 'bool BamTools::Internal::BamHttp::SendGetRequest(size_t)': /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp:409:62: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( WriteToSocket(requestHeader.c_str(), headerSize) != headerSize ) { ^ /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp: In member function 'bool BamTools::Internal::BamHttp::SendHeadRequest()': /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/BamHttp_p.cpp:501:62: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] if ( WriteToSocket(requestHeader.c_str(), headerSize) != headerSize ) { ^ /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 65 [ 55%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostAddress_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/HostAddress_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 26 [ 56%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/ByteArray_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 66 [ 57%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools-static.dir/internal/io/HostInfo_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/HostInfo_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 27 [ 58%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/HostAddress_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 28 [ 59%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -DBamTools_EXPORTS -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -fPIC -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -Wall -fPIC -o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/api/internal/io/HostInfo_p.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 67 [ 60%] Building CXX object src/api/CMakeFiles/BamTools-static.dir/internal/io/HttpHeader_p.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_API_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src 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CMakeFiles/BamTools-static.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools-static.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools-static.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools-static.dir/internal/utils/BamException_p.cpp.o /usr/bin/ranlib ../../lib/libbamtools.a make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 [ 80%] Built target BamTools-static Linking CXX shared library ../../lib/libbamtools.so cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -Wl,-soname,libbamtools.so.2.3.0 -o ../../lib/libbamtools.so.2.3.0 CMakeFiles/BamTools.dir/BamAlignment.cpp.o CMakeFiles/BamTools.dir/BamMultiReader.cpp.o CMakeFiles/BamTools.dir/BamReader.cpp.o CMakeFiles/BamTools.dir/BamWriter.cpp.o CMakeFiles/BamTools.dir/SamHeader.cpp.o CMakeFiles/BamTools.dir/SamProgram.cpp.o CMakeFiles/BamTools.dir/SamProgramChain.cpp.o CMakeFiles/BamTools.dir/SamReadGroup.cpp.o CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o CMakeFiles/BamTools.dir/SamSequence.cpp.o CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamMultiReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamRandomAccessController_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamReader_p.cpp.o CMakeFiles/BamTools.dir/internal/bam/BamWriter_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamIndexFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamStandardIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/index/BamToolsIndex_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamDeviceFactory_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFile_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamFtp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamHttp_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BamPipe_p.cpp.o CMakeFiles/BamTools.dir/internal/io/BgzfStream_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ByteArray_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostAddress_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HostInfo_p.cpp.o CMakeFiles/BamTools.dir/internal/io/HttpHeader_p.cpp.o CMakeFiles/BamTools.dir/internal/io/ILocalIODevice_p.cpp.o CMakeFiles/BamTools.dir/internal/io/RollingBuffer_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocket_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_p.cpp.o CMakeFiles/BamTools.dir/internal/io/TcpSocketEngine_unix_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatParser_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamFormatPrinter_p.cpp.o CMakeFiles/BamTools.dir/internal/sam/SamHeaderValidator_p.cpp.o CMakeFiles/BamTools.dir/internal/utils/BamException_p.cpp.o -lz cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/api && /usr/bin/cmake -E cmake_symlink_library ../../lib/libbamtools.so.2.3.0 ../../lib/libbamtools.so.2.3.0 ../../lib/libbamtools.so make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 [ 80%] Built target BamTools make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/depend make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/bamtools-2.3.0+dfsg /build/buildd/bamtools-2.3.0+dfsg/src/utils /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/utils /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/utils/CMakeFiles/BamTools-utils.dir/DependInfo.cmake --color= Scanning dependencies of target BamTools-utils make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' make -f src/utils/CMakeFiles/BamTools-utils.dir/build.make src/utils/CMakeFiles/BamTools-utils.dir/build make[3]: Entering directory 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-I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/utils/bamtools_utilities.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/utils/bamtools_fasta.cpp Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o Building CXX object src/utils/CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/utils/bamtools_options.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/x86_64-linux-gnu-g++ -DBAMTOOLS_UTILS_LIBRARY -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -Wall -fPIC -o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/utils/bamtools_pileup_engine.cpp Linking CXX static library ../../lib/libbamtools-utils.a cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -P CMakeFiles/BamTools-utils.dir/cmake_clean_target.cmake cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/utils && /usr/bin/cmake -E cmake_link_script CMakeFiles/BamTools-utils.dir/link.txt --verbose=1 /usr/bin/ar cr ../../lib/libbamtools-utils.a CMakeFiles/BamTools-utils.dir/bamtools_fasta.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_options.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_pileup_engine.cpp.o CMakeFiles/BamTools-utils.dir/bamtools_utilities.cpp.o /usr/bin/ranlib ../../lib/libbamtools-utils.a make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 77 78 79 80 [ 85%] Built target BamTools-utils make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/depend make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/bamtools-2.3.0+dfsg /build/buildd/bamtools-2.3.0+dfsg/src/toolkit /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit/CMakeFiles/bamtools_cmd.dir/DependInfo.cmake --color= Scanning dependencies of target bamtools_cmd make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' make -f src/toolkit/CMakeFiles/bamtools_cmd.dir/build.make src/toolkit/CMakeFiles/bamtools_cmd.dir/build make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 81 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 82 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 83 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 84 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 85 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 86 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 87 /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 88 [ 89%] [ 89%] [ 89%] [ 90%] [ 89%] [ 91%] [ 92%] [ 93%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_count.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_coverage.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_filter.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_header.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_index.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_merge.cpp Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_convert.cpp cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_random.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 89 [ 94%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_resolve.cpp /usr/bin/cmake -E cmake_progress_report 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/usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_sort.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 92 [ 97%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_split.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 93 [ 98%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools_stats.cpp /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 94 [100%] Building CXX object src/toolkit/CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/x86_64-linux-gnu-g++ -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -I/build/buildd/bamtools-2.3.0+dfsg/src -I/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/include -I/build/buildd/bamtools-2.3.0+dfsg/src/api -I/build/buildd/bamtools-2.3.0+dfsg/src/utils -Wall -o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -c /build/buildd/bamtools-2.3.0+dfsg/src/toolkit/bamtools.cpp Linking CXX executable ../../bin/bamtools cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/cmake -E cmake_link_script CMakeFiles/bamtools_cmd.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-Bsymbolic-functions -Wl,-z,relro CMakeFiles/bamtools_cmd.dir/bamtools_convert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_count.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_coverage.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_filter.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_header.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_index.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_merge.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_random.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_resolve.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_revert.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_sort.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_split.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools_stats.cpp.o CMakeFiles/bamtools_cmd.dir/bamtools.cpp.o -o ../../bin/bamtools-2.3.0 -rdynamic ../../lib/libbamtools.so.2.3.0 ../../lib/libbamtools-utils.a -ljsoncpp ../../lib/libbamtools.so.2.3.0 -lz -Wl,-rpath,/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/lib: cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/src/toolkit && /usr/bin/cmake -E cmake_symlink_executable ../../bin/bamtools-2.3.0 ../../bin/bamtools make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 81 82 83 84 85 86 87 88 89 90 91 92 93 94 [100%] Built target bamtools_cmd make[2]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' dh_auto_test -a -O--parallel /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --parallel dh_testroot -a -O--parallel dh_prep -a -O--parallel dh_auto_install -a -O--parallel make[1]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -H/build/buildd/bamtools-2.3.0+dfsg -B/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/depend make -f src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/depend make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' cd /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/buildd/bamtools-2.3.0+dfsg 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src/api/CMakeFiles/BamTools-static.dir/build.make src/api/CMakeFiles/BamTools-static.dir/build make -f src/api/CMakeFiles/BamTools.dir/build.make src/api/CMakeFiles/BamTools.dir/build make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools-static.dir/build'. make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 make[3]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'src/api/CMakeFiles/BamTools.dir/build'. make[3]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_report /build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu/CMakeFiles 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Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/shared/bamtools_global.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.3.0 -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.so -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.a -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/api_global.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlgorithms.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAlignment.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamAux.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamConstants.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamIndex.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamMultiReader.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamReader.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/BamWriter.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/IBamIODevice.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamConstants.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamHeader.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgram.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamProgramChain.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroup.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamReadGroupDictionary.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequence.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/SamSequenceDictionary.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/api/algorithms/Sort.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/include/bamtools/bamtools_version.h -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/bin/bamtools-2.3.0 -- Installing: /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/bin/bamtools -- Removed runtime path from "/build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/bin/bamtools-2.3.0" make[1]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/buildd/bamtools-2.3.0+dfsg' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/lib*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbamtools-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbamtools2.3.0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/libbamtools.a debian/libbamtools-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/libbamtools.so debian/libbamtools-dev/usr/lib/x86_64-linux-gnu mv /build/buildd/bamtools-2.3.0+dfsg/debian/tmp/usr/lib/libbamtools.so.2.3.0 debian/libbamtools2.3.0/usr/lib/x86_64-linux-gnu PKGDEV=libbamtools-dev PKGSHL=libbamtools2.3.0 install -d -m 755 debian/libbamtools-dev/usr/include mv debian/tmp/usr/include/bamtools debian/libbamtools-dev/usr/include dh_install # no need to install different versions of bamtools rm -rf debian/bamtools/usr/bin/bamtools mv debian/bamtools/usr/bin/bamtools-[0-9]* debian/bamtools/usr/bin/bamtools make[1]: Leaving directory '/build/buildd/bamtools-2.3.0+dfsg' dh_installdocs -a -O--parallel dh_installchangelogs -a -O--parallel dh_installman -a -O--parallel dh_lintian -a -O--parallel dh_perl -a -O--parallel dh_link -a -O--parallel dh_compress -a -O--parallel dh_fixperms -a -O--parallel dh_strip -a -O--parallel dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: bamtools libbamtools-dev libbamtools2.3.0 dh_strip debug symbol extraction: packages to act on: bamtools libbamtools-dev libbamtools2.3.0 dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `bamtools-dbgsym' in `../bamtools-dbgsym_2.3.0+dfsg-2_amd64.ddeb'. Using buildid for compat level >= 9 libbamtools-dev has no unstripped objects, ignoring find: `/build/buildd/bamtools-2.3.0+dfsg/debian/libbamtools-dev-dbgsym': No such file or directory /usr/bin/pkg_create_dbgsym: nothing in /build/buildd/bamtools-2.3.0+dfsg/debian/libbamtools-dev-dbgsym and no dbgdepends, ignoring Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: building package `libbamtools2.3.0-dbgsym' in `../libbamtools2.3.0-dbgsym_2.3.0+dfsg-2_amd64.ddeb'. dh_makeshlibs -a -O--parallel dh_shlibdeps -a -O--parallel dh_installdeb -a -O--parallel dh_gencontrol -a -O--parallel dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libbamtools-dev: unused substitution variable ${devlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: package libbamtools2.3.0: unused substitution variable ${misc:Pre-Depends} dh_md5sums -a -O--parallel dh_builddeb -a -O--parallel INFO: pkgstriptranslations version 121 pkgstriptranslations: processing bamtools (in debian/bamtools); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/bamtools/DEBIAN/control, package bamtools, directory debian/bamtools Searching for duplicated docs in dependency libbamtools2.3.0... symlinking changelog.Debian.gz in bamtools to file in libbamtools2.3.0 pkgstripfiles: PNG optimization for package bamtools took 0 s dpkg-deb: warning: 'debian/bamtools/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `bamtools' in `../bamtools_2.3.0+dfsg-2_amd64.deb'. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing libbamtools-dev (in debian/libbamtools-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbamtools-dev/DEBIAN/control, package libbamtools-dev, directory debian/libbamtools-dev Searching for duplicated docs in dependency libbamtools2.3.0... symlinking changelog.Debian.gz in libbamtools-dev to file in libbamtools2.3.0 pkgstripfiles: PNG optimization for package libbamtools-dev took 0 s dpkg-deb: warning: 'debian/libbamtools-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libbamtools-dev' in `../libbamtools-dev_2.3.0+dfsg-2_amd64.deb'. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing libbamtools2.3.0 (in debian/libbamtools2.3.0); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libbamtools2.3.0/DEBIAN/control, package libbamtools2.3.0, directory debian/libbamtools2.3.0 pkgstripfiles: PNG optimization for package libbamtools2.3.0 took 0 s dpkg-deb: warning: 'debian/libbamtools2.3.0/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `libbamtools2.3.0' in `../libbamtools2.3.0_2.3.0+dfsg-2_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../bamtools_2.3.0+dfsg-2_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build bamtools-2.3.0+dfsg dpkg-buildpackage: binary-only upload (no source included) ****************************************************************************** Build finished at 20140710-1410 Publishing debug debs. chroot-autobuild/build/buildd/bamtools_2.3.0+dfsg-2_amd64.deb: new debian package, version 2.0. size 182960 bytes: control archive= 1388 bytes. 1863 bytes, 38 lines control 256 bytes, 4 lines md5sums Package: bamtools Version: 2.3.0+dfsg-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 623 Depends: libbamtools2.3.0, libc6 (>= 2.14), libgcc1 (>= 1:4.1.1), libjsoncpp0 (>= 0.6.0~rc2), libstdc++6 (>= 4.4.0) Section: science Priority: optional Homepage: https://github.com/pezmaster31/bamtools/wiki Description: toolkit for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the bamtools command-line toolkit . Available bamtools commands: convert Converts between BAM and a number of other formats count Prints number of alignments in BAM file(s) coverage Prints coverage statistics from the input BAM file filter Filters BAM file(s) by user-specified criteria header Prints BAM header information index Generates index for BAM file merge Merge multiple BAM files into single file random Select random alignments from existing BAM file(s), intended more as a testing tool. resolve Resolves paired-end reads (marking the IsProperPair flag as needed) revert Removes duplicate marks and restores original base qualities sort Sorts the BAM file according to some criteria split Splits a BAM file on user-specified property, creating a new BAM output file for each value found stats Prints some basic statistics from input BAM file(s) chroot-autobuild/build/buildd/libbamtools-dev_2.3.0+dfsg-2_amd64.deb: new debian package, version 2.0. size 200952 bytes: control archive= 1520 bytes. 923 bytes, 22 lines control 1711 bytes, 23 lines md5sums Package: libbamtools-dev Source: bamtools Version: 2.3.0+dfsg-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1411 Depends: libbamtools2.3.0 (= 2.3.0+dfsg-2) Section: libdevel Priority: optional Homepage: https://github.com/pezmaster31/bamtools/wiki Description: C++ API for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the developers API package chroot-autobuild/build/buildd/libbamtools2.3.0_2.3.0+dfsg-2_amd64.deb: new debian package, version 2.0. size 157608 bytes: control archive= 1168 bytes. 969 bytes, 22 lines control 240 bytes, 3 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 35 bytes, 1 lines shlibs Package: libbamtools2.3.0 Source: bamtools Version: 2.3.0+dfsg-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 518 Depends: libc6 (>= 2.15), libgcc1 (>= 1:4.1.1), libstdc++6 (>= 4.4.0), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Homepage: https://github.com/pezmaster31/bamtools/wiki Description: dynnamic library for manipulating BAM (genome alignment) files BamTools facilitates research analysis and data management using BAM files. It copes with the enormous amount of data produced by current sequencing technologies that is typically stored in compressed, binary formats that are not easily handled by the text-based parsers commonly used in bioinformatics research. . BamTools provides both a C++ API for BAM file support as well as a command-line toolkit. . This is the runtime library chroot-autobuild/build/buildd/bamtools_2.3.0+dfsg-2_amd64.deb: drwxr-xr-x root/root 0 2014-07-10 14:10 ./ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/share/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/share/man/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/share/man/man1/ -rw-r--r-- root/root 792 2014-07-10 14:10 ./usr/share/man/man1/bamtools.1.gz drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/share/lintian/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 79 2014-06-30 08:01 ./usr/share/lintian/overrides/bamtools drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/share/doc/bamtools/ -rw-r--r-- root/root 1575 2014-06-30 08:01 ./usr/share/doc/bamtools/copyright drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/bin/ -rwxr-xr-x root/root 589800 2014-07-10 14:10 ./usr/bin/bamtools lrwxrwxrwx root/root 0 2014-07-10 14:10 ./usr/share/doc/bamtools/changelog.Debian.gz -> ../libbamtools2.3.0/changelog.Debian.gz chroot-autobuild/build/buildd/libbamtools-dev_2.3.0+dfsg-2_amd64.deb: drwxr-xr-x root/root 0 2014-07-10 14:10 ./ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/lib/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 1282512 2014-07-10 14:10 ./usr/lib/x86_64-linux-gnu/libbamtools.a drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/include/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/include/bamtools/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/include/bamtools/shared/ -rw-r--r-- root/root 2790 2013-07-24 20:24 ./usr/include/bamtools/shared/bamtools_global.h -rw-r--r-- root/root 852 2014-07-10 14:09 ./usr/include/bamtools/bamtools_version.h drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/include/bamtools/api/ -rw-r--r-- root/root 2885 2013-07-24 20:24 ./usr/include/bamtools/api/BamIndex.h -rw-r--r-- root/root 2207 2013-07-24 20:24 ./usr/include/bamtools/api/BamWriter.h -rw-r--r-- root/root 14569 2013-07-24 20:24 ./usr/include/bamtools/api/BamAux.h -rw-r--r-- root/root 9682 2013-07-24 20:24 ./usr/include/bamtools/api/BamConstants.h -rw-r--r-- root/root 2294 2013-07-24 20:24 ./usr/include/bamtools/api/SamProgram.h -rw-r--r-- root/root 757 2013-07-24 20:24 ./usr/include/bamtools/api/api_global.h -rw-r--r-- root/root 2853 2013-07-24 20:24 ./usr/include/bamtools/api/SamHeader.h -rw-r--r-- root/root 847 2013-07-24 20:24 ./usr/include/bamtools/api/BamAlgorithms.h -rw-r--r-- root/root 3127 2013-07-24 20:24 ./usr/include/bamtools/api/SamProgramChain.h -rw-r--r-- root/root 23763 2013-07-24 20:24 ./usr/include/bamtools/api/BamAlignment.h -rw-r--r-- root/root 3336 2013-07-24 20:24 ./usr/include/bamtools/api/SamReadGroup.h -rw-r--r-- root/root 3281 2013-07-24 20:24 ./usr/include/bamtools/api/SamReadGroupDictionary.h -rw-r--r-- root/root 3022 2013-07-24 20:24 ./usr/include/bamtools/api/IBamIODevice.h drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/include/bamtools/api/algorithms/ -rw-r--r-- root/root 12112 2013-07-24 20:24 ./usr/include/bamtools/api/algorithms/Sort.h -rw-r--r-- root/root 4285 2013-07-24 20:24 ./usr/include/bamtools/api/BamReader.h -rw-r--r-- root/root 2454 2013-07-24 20:24 ./usr/include/bamtools/api/SamSequence.h -rw-r--r-- root/root 3248 2013-07-24 20:24 ./usr/include/bamtools/api/SamSequenceDictionary.h -rw-r--r-- root/root 3725 2013-07-24 20:24 ./usr/include/bamtools/api/SamConstants.h -rw-r--r-- root/root 4676 2013-07-24 20:24 ./usr/include/bamtools/api/BamMultiReader.h drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/share/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/share/doc/libbamtools-dev/ -rw-r--r-- root/root 1575 2014-06-30 08:01 ./usr/share/doc/libbamtools-dev/copyright lrwxrwxrwx root/root 0 2014-07-10 14:10 ./usr/lib/x86_64-linux-gnu/libbamtools.so -> libbamtools.so.2.3.0 lrwxrwxrwx root/root 0 2014-07-10 14:10 ./usr/share/doc/libbamtools-dev/changelog.Debian.gz -> ../libbamtools2.3.0/changelog.Debian.gz chroot-autobuild/build/buildd/libbamtools2.3.0_2.3.0+dfsg-2_amd64.deb: drwxr-xr-x root/root 0 2014-07-10 14:10 ./ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/lib/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 494640 2014-07-10 14:10 ./usr/lib/x86_64-linux-gnu/libbamtools.so.2.3.0 drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/share/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-07-10 14:10 ./usr/share/doc/libbamtools2.3.0/ -rw-r--r-- root/root 1575 2014-06-30 08:01 ./usr/share/doc/libbamtools2.3.0/copyright -rw-r--r-- root/root 247 2014-06-30 08:01 ./usr/share/doc/libbamtools2.3.0/changelog.Debian.gz bamtools_2.3.0+dfsg-2_amd64.changes: Format: 1.8 Date: Mon, 30 Jun 2014 09:50:50 +0200 Source: bamtools Binary: bamtools libbamtools-dev libbamtools2.3.0 Architecture: amd64 Version: 2.3.0+dfsg-2 Distribution: utopic-proposed Urgency: medium Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Andreas Tille Description: bamtools - toolkit for manipulating BAM (genome alignment) files libbamtools-dev - C++ API for manipulating BAM (genome alignment) files libbamtools2.3.0 - dynnamic library for manipulating BAM (genome alignment) files Closes: 753210 Changes: bamtools (2.3.0+dfsg-2) unstable; urgency=medium . * Drop d-shlibs patch and add versioned Build-Depends for d-shlibs Closes: #753210 Checksums-Sha1: a7c8bd5794d62a69cf292539b7475b1c0611d3e8 182960 bamtools_2.3.0+dfsg-2_amd64.deb 0c2b219650ec2ae0e73b60c3fd5293b94dba0f2d 200952 libbamtools-dev_2.3.0+dfsg-2_amd64.deb a278cc006d732375e8cf2a6eba222504fc20a4d9 157608 libbamtools2.3.0_2.3.0+dfsg-2_amd64.deb Checksums-Sha256: f0c3af2326b66131bac3ac5f963dc761fc85bcd9970e08e48c14c391e16b63ed 182960 bamtools_2.3.0+dfsg-2_amd64.deb 227021cf7e25290824c5717e4ae8cfac5d8487bc8aced0d7124589b6830de0c0 200952 libbamtools-dev_2.3.0+dfsg-2_amd64.deb 0bfc35fd429b9266d3dbad00d0915e20ad304eae4e181b9e90a680f5f826f551 157608 libbamtools2.3.0_2.3.0+dfsg-2_amd64.deb Files: cd8f45c13462283b95e3769d6609b2ff 182960 science optional bamtools_2.3.0+dfsg-2_amd64.deb 0c14607eee19cd80224add3cced45659 200952 libdevel optional libbamtools-dev_2.3.0+dfsg-2_amd64.deb ad6029f3f3378cd019f7928394fff66b 157608 libs optional libbamtools2.3.0_2.3.0+dfsg-2_amd64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140710-1410 Build needed 00:00:48, 102572k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-6143572'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-6143572/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-6143572'] Unmounting chroot for build PACKAGEBUILD-6143572... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-6143572'] Removing build PACKAGEBUILD-6143572