Ubuntu
baitfisher package

baitfisher 1.2.7+git20211020.de26d5c+dfsg-1 source package in Ubuntu

Changelog

baitfisher (1.2.7+git20211020.de26d5c+dfsg-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Standards-Version: 4.6.0 (routine-update)
  * Add missing build dependency on dh addon.

 -- Andreas Tille <email address hidden>  Sun, 16 Jan 2022 08:18:11 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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Downloads

File Size SHA-256 Checksum
baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.dsc 2.2 KiB 8ee145336e2dab3c2a53955fedb4ce6fc17c016bfaa486c7299ae17420e51dda
baitfisher_1.2.7+git20211020.de26d5c+dfsg.orig.tar.xz 3.3 MiB 18173901d19d48a42d2f73d43f20fcbe7e9a7bc7be0d085cf396b9e06dae8103
baitfisher_1.2.7+git20211020.de26d5c+dfsg-1.debian.tar.xz 4.7 KiB 49509da2d04fab1652eefface87d35909767be86e14f5c7911a56147d5228e4b

No changes file available.

Binary packages built by this source

baitfisher: software package for designing hybrid enrichment probes

 The BaitFisher package consists of two programs: BaitFisher and BaitFilter.
 .
 BaitFisher was been designed to construct hybrid enrichment baits from
 multiple sequence alignments (MSAs) or annotated features in MSAs. The main
 goal of BaitFisher is to avoid redundancy in the construction of baits by
 designing fewer baits in conserved regions of the MSAs and designing more baits
 in variable regions. This makes use of the fact that hybrid enrichment baits
 can differ to some extends from the target region, which they should capture
 in the enrichment procedure.
 By specifying the allowed distance between baits and the sequences in the MSAs
 the user can control the allowed bait-to-target distance and the degree of
 reduction in the number of baits that are designed.
 See the BaitFisher paper for details.
 .
 BaitFilter was designed (i) to determine whether baits bind unspecifically to
 a reference genome, (ii) to filter baits that only have partial length matches
 to a reference genome, (iii) to determine the optimal bait region in a MSA and
 to convert baits to a format that can be uploaded at a bait constructing
 company. The optimal bait region can be the most conserved region in the MSA
 or the region with the highest number of sequences without gaps or ambiguous
 nucleotides.

baitfisher-dbgsym: debug symbols for baitfisher