https://launchpad.net/ubuntu/+source/avogadro/1.2.0-4/+build/15143968 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-007 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 18 Jul 17:11:47 ntpdate[1845]: adjust time server 10.211.37.1 offset -0.000753 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15143968 /home/buildd/filecache-default/ccc8a783f4c9fcf0282a95411cd13cfaeeda0fbe Creating target for build PACKAGEBUILD-15143968 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15143968 Starting target for build PACKAGEBUILD-15143968 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15143968 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15143968 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15143968 Updating target for build PACKAGEBUILD-15143968 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 Packages [1082 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [524 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe i386 Packages [8605 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5018 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 Packages [101 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [51.0 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 Packages [429 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [196 kB] Fetched 16.5 MB in 5s (3067 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-8 g++-8 gcc-8 libargon2-1 libasan5 libgcc-8-dev libncurses6 libncursesw6 libprocps7 libstdc++-8-dev libtinfo6 libubsan1 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libitm1 libkmod2 liblz4-1 libmount1 libmpx2 libncurses5 libncursesw5 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libquadmath0 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev make mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux 105 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 87.0 MB of archives. After this operation, 114 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main i386 base-files i386 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo6 i386 6.1+20180210-4ubuntu1 [84.6 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 debianutils i386 4.8.6 [86.1 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 bash i386 4.4.18-2ubuntu2 [645 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdutils i386 1:2.32-0.1ubuntu1 [62.7 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 tar i386 1.30+dfsg-2 [265 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg i386 1.19.0.5ubuntu3 [1162 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libext2fs2 i386 1.44.3-1 [186 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fsprogs i386 1.44.3-1 [433 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-bin i386 6.1+20180210-4ubuntu1 [166 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libperl5.26 i386 5.26.2-6 [3168 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 perl i386 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 perl-base i386 5.26.2-6 [1495 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 sed i386 4.5-1 [187 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 libuuid1 i386 2.32-0.1ubuntu1 [20.6 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 libblkid1 i386 2.32-0.1ubuntu1 [143 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 libfdisk1 i386 2.32-0.1ubuntu1 [186 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw6 i386 6.1+20180210-4ubuntu1 [141 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libpcre3 i386 2:8.39-10ubuntu2 [229 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libselinux1 i386 2.8-1build1 [73.2 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 libmount1 i386 2.32-0.1ubuntu1 [152 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 libsmartcols1 i386 2.32-0.1ubuntu1 [94.0 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 fdisk i386 2.32-0.1ubuntu1 [118 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 util-linux i386 2.32-0.1ubuntu1 [943 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 base-passwd i386 3.5.45 [47.9 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libquadmath0 i386 8.1.0-11ubuntu1 [208 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libitm1 i386 8.1.0-11ubuntu1 [30.8 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-8-base i386 8.1.0-11ubuntu1 [18.8 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgcc1 i386 1:8.1.0-11ubuntu1 [48.1 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmpx2 i386 8.1.0-11ubuntu1 [13.0 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcc1-0 i386 8.1.0-11ubuntu1 [41.9 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libatomic1 i386 8.1.0-11ubuntu1 [9628 B] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgomp1 i386 8.1.0-11ubuntu1 [80.7 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libstdc++6 i386 8.1.0-11ubuntu1 [430 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 liblz4-1 i386 1.8.2-1ubuntu1 [69.2 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libudev1 i386 238-5ubuntu2 [59.7 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 libapt-pkg5.0 i386 1.7.0~alpha2 [875 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 debconf all 1.5.67 [124 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 adduser all 3.117ubuntu1 [163 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgpg-error0 i386 1.32-1 [60.9 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcrypt20 i386 1.8.3-1ubuntu1 [401 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 gpgv i386 2.2.8-1ubuntu1 [217 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 libseccomp2 i386 2.3.3-3ubuntu1 [35.6 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 apt i386 1.7.0~alpha2 [1200 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libapparmor1 i386 2.12-4ubuntu6 [32.6 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 libcap-ng0 i386 0.7.9-1 [11.5 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit1 i386 1:2.8.3-1ubuntu2 [40.1 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 libargon2-1 i386 0~20171227-0.1 [25.2 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 libcryptsetup12 i386 2:2.0.3-6ubuntu1 [156 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 libkmod2 i386 25-1ubuntu1 [48.3 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 mount i386 2.32-0.1ubuntu1 [110 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses6 i386 6.1+20180210-4ubuntu1 [108 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 libprocps7 i386 2:3.3.15-2ubuntu1 [33.6 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 procps i386 2:3.3.15-2ubuntu1 [230 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 systemd i386 238-5ubuntu2 [2982 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsystemd0 i386 238-5ubuntu2 [225 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 systemd-sysv i386 238-5ubuntu2 [13.7 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 libcom-err2 i386 1.44.3-1 [9492 B] Get:62 http://ftpmaster.internal/ubuntu cosmic/main i386 libsepol1 i386 2.8-1 [276 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 libsemanage-common all 2.8-1build1 [7000 B] Get:64 http://ftpmaster.internal/ubuntu cosmic/main i386 libsemanage1 i386 2.8-1build1 [94.3 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main i386 libss2 i386 1.44.3-1 [11.6 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main i386 libgmp10 i386 2:6.1.2+dfsg-3 [246 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main i386 libp11-kit0 i386 0.23.12-2 [184 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main i386 libtasn1-6 i386 4.13-3 [38.8 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses5 i386 6.1+20180210-4ubuntu1 [101 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw5 i386 6.1+20180210-4ubuntu1 [128 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo5 i386 6.1+20180210-4ubuntu1 [79.7 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main i386 libargon2-0 i386 0~20171227-0.1 [4532 B] Get:73 http://ftpmaster.internal/ubuntu cosmic/main i386 readline-common all 7.0-5 [52.2 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main i386 libreadline7 i386 7.0-5 [127 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main i386 libslang2 i386 2.3.2-1ubuntu1 [426 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsqlite3-0 i386 3.24.0-1 [541 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main i386 libssl1.1 i386 1.1.0g-2ubuntu5 [1123 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main i386 openssl i386 1.1.0g-2ubuntu5 [542 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main i386 tzdata all 2018e-1 [188 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libpng16-16 i386 1.6.34-2 [184 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 binutils-common i386 2.31-1ubuntu1 [194 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 binutils i386 2.31-1ubuntu1 [3388 B] Get:83 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 binutils-i686-linux-gnu i386 2.31-1ubuntu1 [2015 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libbinutils i386 2.31-1ubuntu1 [521 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 cpp-8 i386 8.1.0-11ubuntu1 [7524 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 cpp i386 4:8.1.0-2ubuntu0.3 [27.6 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libasan5 i386 8.1.0-11ubuntu1 [376 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libubsan1 i386 8.1.0-11ubuntu1 [138 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgcc-8-dev i386 8.1.0-11ubuntu1 [2302 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-8 i386 8.1.0-11ubuntu1 [8308 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc i386 4:8.1.0-2ubuntu0.3 [5248 B] Get:92 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libstdc++-8-dev i386 8.1.0-11ubuntu1 [1578 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 g++-8 i386 8.1.0-11ubuntu1 [8423 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 g++ i386 4:8.1.0-2ubuntu0.3 [1596 B] Get:95 http://ftpmaster.internal/ubuntu cosmic/main i386 make i386 4.2.1-1.1 [168 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main i386 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main i386 build-essential i386 12.5ubuntu2 [4728 B] Get:99 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libasan4 i386 7.3.0-26ubuntu1 [361 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libubsan0 i386 7.3.0-26ubuntu1 [141 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcilkrts5 i386 7.3.0-26ubuntu1 [47.4 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 g++-7 i386 7.3.0-26ubuntu1 [7817 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-7 i386 7.3.0-26ubuntu1 [7700 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libstdc++-7-dev i386 7.3.0-26ubuntu1 [1504 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgcc-7-dev i386 7.3.0-26ubuntu1 [2396 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 cpp-7 i386 7.3.0-26ubuntu1 [6969 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-7-base i386 7.3.0-26ubuntu1 [18.9 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fslibs i386 1.44.3-1 [2704 B] Get:109 http://ftpmaster.internal/ubuntu cosmic/main i386 pinentry-curses i386 1.1.0-1build2 [37.8 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main i386 libnpth0 i386 1.6-1 [8032 B] Get:111 http://ftpmaster.internal/ubuntu cosmic/main i386 gpg i386 2.2.8-1ubuntu1 [511 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main i386 gpgconf i386 2.2.8-1ubuntu1 [130 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/main i386 gpg-agent i386 2.2.8-1ubuntu1 [247 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main i386 libcomerr2 i386 1.44.3-1 [2700 B] Get:115 http://ftpmaster.internal/ubuntu cosmic/main i386 libusb-0.1-4 i386 2:0.1.12-32 [17.9 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 linux-libc-dev i386 4.17.0-5.6 [1003 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic/main i386 pkgbinarymangler all 141 [53.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.0 MB in 3s (27.2 MB/s) (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_i386.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:i386. (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_i386.deb ... Unpacking libtinfo6:i386 (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:i386 (6.1+20180210-4ubuntu1) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_i386.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_i386.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_i386.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_i386.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_i386.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12641 files and directories currently installed.) 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Setting up gcc-7-base:i386 (7.3.0-26ubuntu1) ... Setting up binutils-common:i386 (2.31-1ubuntu1) ... Setting up libmpx2:i386 (8.1.0-11ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:i386 (5.26.2-6) ... Setting up libssl1.1:i386 (1.1.0g-2ubuntu5) ... Setting up openssl (1.1.0g-2ubuntu5) ... Setting up libsqlite3-0:i386 (3.24.0-1) ... Setting up pinentry-curses (1.1.0-1build2) ... Setting up libcomerr2:i386 (1.44.3-1) ... Setting up libslang2:i386 (2.3.2-1ubuntu1) ... Setting up libasan5:i386 (8.1.0-11ubuntu1) ... Setting up libusb-0.1-4:i386 (2:0.1.12-32) ... Setting up libitm1:i386 (8.1.0-11ubuntu1) ... Setting up gpg (2.2.8-1ubuntu1) ... Setting up libubsan1:i386 (8.1.0-11ubuntu1) ... Setting up libasan4:i386 (7.3.0-26ubuntu1) ... Setting up libbinutils:i386 (2.31-1ubuntu1) ... Setting up libcilkrts5:i386 (7.3.0-26ubuntu1) ... Setting up libubsan0:i386 (7.3.0-26ubuntu1) ... Setting up gpg-agent (2.2.8-1ubuntu1) ... Setting up libgcc-7-dev:i386 (7.3.0-26ubuntu1) ... Setting up cpp-7 (7.3.0-26ubuntu1) ... Setting up libstdc++-7-dev:i386 (7.3.0-26ubuntu1) ... Setting up perl (5.26.2-6) ... Setting up binutils-i686-linux-gnu (2.31-1ubuntu1) ... Setting up libgcc-8-dev:i386 (8.1.0-11ubuntu1) ... Setting up binutils (2.31-1ubuntu1) ... Setting up libstdc++-8-dev:i386 (8.1.0-11ubuntu1) ... Setting up gcc-7 (7.3.0-26ubuntu1) ... Setting up g++-7 (7.3.0-26ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu3) ... Setting up gcc-8 (8.1.0-11ubuntu1) ... Setting up g++-8 (8.1.0-11ubuntu1) ... Setting up dpkg-dev (1.19.0.5ubuntu3) ... Setting up gcc (4:8.1.0-2ubuntu0.3) ... Setting up g++ (4:8.1.0-2ubuntu0.3) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15143968 i386 cosmic-proposed -c chroot:build-PACKAGEBUILD-15143968 --arch=i386 --dist=cosmic-proposed --nolog avogadro_1.2.0-4.dsc Initiating build PACKAGEBUILD-15143968 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-007.buildd +==============================================================================+ | avogadro 1.2.0-4 (i386) 18 Jul 2018 17:12 | +==============================================================================+ Package: avogadro Version: 1.2.0-4 Source Version: 1.2.0-4 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/avogadro-f36_4g/avogadro-1.2.0' with '<>' I: NOTICE: Log filtering will replace 'build/avogadro-f36_4g' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15143968/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- avogadro_1.2.0-4.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-3xBeAM/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-3xBeAM/apt_archive ./ InRelease Get:2 copy:/<>/resolver-3xBeAM/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-3xBeAM/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-3xBeAM/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-3xBeAM/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-3xBeAM/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13714 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: cmake, debhelper (>= 10), dh-python, libboost-python-dev, libeigen3-dev (>> 3.3), libgl2ps-dev, libglew-dev, libopenbabel-dev, libqt4-dev, libqt4-opengl-dev, libsymspg-dev, pkg-config, python, python-dev, python-numpy, python-sip-dev, qt4-dev-tools, zlib1g-dev Filtered Build-Depends: cmake, debhelper (>= 10), dh-python, libboost-python-dev, libeigen3-dev (>> 3.3), libgl2ps-dev, libglew-dev, libopenbabel-dev, libqt4-dev, libqt4-opengl-dev, libsymspg-dev, pkg-config, python, python-dev, python-numpy, python-sip-dev, qt4-dev-tools, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-avogadro-dummy' in '/<>/resolver-wcWwls/apt_archive/sbuild-build-depends-avogadro-dummy.deb'. Ign:1 copy:/<>/resolver-wcWwls/apt_archive ./ InRelease Get:2 copy:/<>/resolver-wcWwls/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-wcWwls/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-wcWwls/apt_archive ./ Sources [316 B] Get:5 copy:/<>/resolver-wcWwls/apt_archive ./ Packages [639 B] Fetched 3074 B in 49710d 6h 28min 15s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install avogadro build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libaudio2 libblas3 libboost-python-dev libboost-python1.67-dev libboost-python1.67.0 libboost1.67-dev libbsd0 libcairo2 libcroco3 libcurl4 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps-dev libgl2ps1.4 libglapi-mesa libgles2 libglew-dev libglew2.0 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm6.0 liblzo2-2 libmagic-mgc libmagic1 libmng2 libmpdec2 libnghttp2-14 libopenbabel-dev libopenbabel5 libopengl0 libpciaccess0 libpipeline1 libpixman-1-0 libpsl5 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-sql-sqlite libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsigsegv2 libsm6 libsymspg-dev libsymspg1 libtiff5 libtimedate-perl libtool libuv1 libwayland-client0 libwayland-server0 libwind0-heimdal libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi6 libxml2 libxrender1 libxshmfence-dev libxshmfence1 libxt6 libxtst6 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf python python-dev python-enum34 python-minimal python-numpy python-sip python-sip-dev python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-dev python3.6-minimal qdbus qt4-dev-tools qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n sip-dev ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-xext-dev x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip nas libboost1.67-doc gccxml libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-random1.67-dev libboost-regex1.67-dev libboost-serialization1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev libeigen3-doc libmrpt-dev glew-utils krb5-doc krb5-user liblcms2-utils libopenbabel-doc pciutils libqt4-declarative-folderlistmodel libqt4-declarative-gestures libqt4-declarative-particles libqt4-declarative-shaders qt4-qmlviewer firebird-dev libmysqlclient-dev libpq-dev libsqlite0-dev libsqlite3-dev qt4-doc unixodbc-dev libicu55 libthai0 qt4-qtconfig lm-sensors libtool-doc gfortran | fortran95-compiler gcj-jdk libxcb-doc libxext-doc m4-doc apparmor less www-browser libmail-box-perl python-doc python-tk python-enum34-doc gfortran python-nose python-numpy-dbg python-numpy-doc python-sip-doc python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv python3.6-venv python3.6-doc qt4-doc-html Recommended packages: curl | wget | lynx dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libcups2 qt-at-spi libsasl2-modules libltdl-dev libx11-doc libmail-sendmail-perl qt4-designer qt4-doc The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libaudio2 libblas3 libboost-python-dev libboost-python1.67-dev libboost-python1.67.0 libboost1.67-dev libbsd0 libcairo2 libcroco3 libcurl4 libdbus-1-3 libdrm-amdgpu1 libdrm-common libdrm-dev libdrm-intel1 libdrm-nouveau2 libdrm-radeon1 libdrm2 libedit2 libegl-mesa0 libegl1 libeigen3-dev libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libgbm1 libgfortran5 libgl1 libgl1-mesa-dev libgl1-mesa-dri libgl2ps-dev libgl2ps1.4 libglapi-mesa libgles2 libglew-dev libglew2.0 libglib2.0-0 libglu1-mesa libglu1-mesa-dev libglvnd-core-dev libglvnd-dev libglvnd0 libglx-mesa0 libglx0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice6 libicu60 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 liblcms2-2 libldap-2.4-2 libldap-common libllvm6.0 liblzo2-2 libmagic-mgc libmagic1 libmng2 libmpdec2 libnghttp2-14 libopenbabel-dev libopenbabel5 libopengl0 libpciaccess0 libpipeline1 libpixman-1-0 libpsl5 libpthread-stubs0-dev libpython-dev libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libpython3-dev libpython3-stdlib libpython3.6 libpython3.6-dev libpython3.6-minimal libpython3.6-stdlib libqt4-dbus libqt4-declarative libqt4-designer libqt4-dev libqt4-dev-bin libqt4-help libqt4-network libqt4-opengl libqt4-opengl-dev libqt4-qt3support libqt4-script libqt4-scripttools libqt4-sql libqt4-sql-sqlite libqt4-svg libqt4-test libqt4-xml libqt4-xmlpatterns libqtcore4 libqtdbus4 libqtgui4 librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsensors4 libsigsegv2 libsm6 libsymspg-dev libsymspg1 libtiff5 libtimedate-perl libtool libuv1 libwayland-client0 libwayland-server0 libwind0-heimdal libx11-6 libx11-data libx11-dev libx11-xcb-dev libx11-xcb1 libxau-dev libxau6 libxcb-dri2-0 libxcb-dri2-0-dev libxcb-dri3-0 libxcb-dri3-dev libxcb-glx0 libxcb-glx0-dev libxcb-present-dev libxcb-present0 libxcb-randr0 libxcb-randr0-dev libxcb-render0 libxcb-render0-dev libxcb-shape0 libxcb-shape0-dev libxcb-shm0 libxcb-sync-dev libxcb-sync1 libxcb-xfixes0 libxcb-xfixes0-dev libxcb1 libxcb1-dev libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxi6 libxml2 libxrender1 libxshmfence-dev libxshmfence1 libxt6 libxtst6 libxxf86vm-dev libxxf86vm1 m4 man-db mesa-common-dev mime-support pkg-config po-debconf python python-dev python-enum34 python-minimal python-numpy python-sip python-sip-dev python2 python2-dev python2-minimal python2.7 python2.7-dev python2.7-minimal python3 python3-dev python3-distutils python3-lib2to3 python3-minimal python3.6 python3.6-dev python3.6-minimal qdbus qt4-dev-tools qt4-linguist-tools qt4-qmake qtchooser qtcore4-l10n sbuild-build-depends-avogadro-dummy sip-dev ucf x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev x11proto-dri2-dev x11proto-fixes-dev x11proto-gl-dev x11proto-xext-dev x11proto-xf86vidmode-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 251 newly installed, 0 to remove and 0 not upgraded. Need to get 185 MB of archives. After this operation, 791 MB of additional disk space will be used. Get:1 copy:/<>/resolver-wcWwls/apt_archive ./ sbuild-build-depends-avogadro-dummy 0.invalid.0 [968 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython3.6-minimal i386 3.6.6-1 [533 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 libexpat1 i386 2.2.5-3 [78.1 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 python3.6-minimal i386 3.6.6-1 [1607 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 python3-minimal i386 3.6.6-1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 mime-support all 3.60ubuntu1 [30.1 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 libmpdec2 i386 2.4.2-2 [80.0 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython3.6-stdlib i386 3.6.6-1 [1722 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 python3.6 i386 3.6.6-1 [190 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libpython3-stdlib i386 3.6.6-1 [7144 B] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 python3 i386 3.6.6-1 [33.5 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libxau6 i386 1:1.0.8-1 [8352 B] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 libbsd0 i386 0.9.1-1 [48.8 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 libxdmcp6 i386 1:1.1.2-3 [11.1 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb1 i386 1.13-1 [50.0 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libx11-data all 2:1.6.5-1 [113 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libx11-6 i386 2:1.6.5-1 [593 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 libxext6 i386 2:1.3.3-1 [31.6 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main i386 groff-base i386 1.22.3-10 [1169 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 libpipeline1 i386 1.5.0-1 [27.2 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 man-db i386 2.8.3-2 [1028 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 libfreetype6 i386 2.8.1-2ubuntu2 [351 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 ucf all 3.0038 [50.5 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 fonts-dejavu-core all 2.37-1 [1041 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 fontconfig-config all 2.12.6-0ubuntu2 [55.8 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 libfontconfig1 i386 2.12.6-0ubuntu2 [146 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 fontconfig i386 2.12.6-0ubuntu2 [169 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main i386 libjpeg-turbo8 i386 1.5.2-0ubuntu6 [118 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 libjpeg8 i386 8c-2ubuntu8 [2188 B] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 liblcms2-2 i386 2.9-2 [150 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/universe i386 libmng2 i386 2.0.2-0ubuntu3 [166 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 x11-common all 1:7.7+19ubuntu8 [22.5 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 libice6 i386 2:1.0.9-2 [42.6 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libsm6 i386 2:1.2.2-1 [14.8 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 libxxf86vm1 i386 1:1.1.4-1 [11.3 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2.7-minimal i386 2.7.15-1 [334 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 python2.7-minimal i386 2.7.15-1 [1319 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 python2-minimal i386 2.7.15-3 [28.1 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 python-minimal i386 2.7.15-3 [5996 B] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2.7-stdlib i386 2.7.15-1 [1929 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 python2.7 i386 2.7.15-1 [239 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2-stdlib i386 2.7.15-3 [7728 B] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython-stdlib i386 2.7.15-3 [5824 B] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 python2 i386 2.7.15-3 [26.5 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 python i386 2.7.15-3 [7832 B] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic-mgc i386 1:5.33-3 [192 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic1 i386 1:5.33-3 [76.6 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 file i386 1:5.33-3 [22.8 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 libdbus-1-3 i386 1.12.2-1ubuntu1 [188 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 libelf1 i386 0.170-0.5 [50.7 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-0 i386 2.56.1-2ubuntu1 [1232 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu60 i386 60.2-6ubuntu1 [8192 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libxml2 i386 2.9.4+dfsg1-7build1 [699 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext-base i386 0.19.8.1-6build1 [51.3 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-common all 2.4.92-1 [4848 B] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm2 i386 2.4.92-1 [33.5 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main i386 libedit2 i386 3.1-20180525-1 [82.9 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5support0 i386 1.16-2build1 [32.8 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main i386 libk5crypto3 i386 1.16-2build1 [90.0 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 libkeyutils1 i386 1.5.9-9.2ubuntu3 [8940 B] Get:62 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5-3 i386 1.16-2build1 [303 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 libgssapi-krb5-2 i386 1.16-2build1 [132 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main i386 libpsl5 i386 0.20.2-1 [49.9 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main i386 m4 i386 1.4.18-1 [196 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main i386 autoconf all 2.69-11 [322 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main i386 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main i386 autopoint all 0.19.8.1-6build1 [412 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main i386 cmake-data all 3.11.2-1 [1367 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main i386 liblzo2-2 i386 2.10-0.1 [52.8 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive13 i386 3.2.2-4 [328 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main i386 libroken18-heimdal i386 7.5.0+dfsg-2 [44.8 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main i386 libasn1-8-heimdal i386 7.5.0+dfsg-2 [183 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main i386 libheimbase1-heimdal i386 7.5.0+dfsg-2 [32.2 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main i386 libhcrypto4-heimdal i386 7.5.0+dfsg-2 [92.6 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main i386 libwind0-heimdal i386 7.5.0+dfsg-2 [48.4 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main i386 libhx509-5-heimdal i386 7.5.0+dfsg-2 [118 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main i386 libkrb5-26-heimdal i386 7.5.0+dfsg-2 [231 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main i386 libheimntlm0-heimdal i386 7.5.0+dfsg-2 [16.3 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic/main i386 libgssapi3-heimdal i386 7.5.0+dfsg-2 [106 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main i386 libsasl2-modules-db i386 2.1.27~101-g0780600+dfsg-3ubuntu2 [15.6 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main i386 libsasl2-2 i386 2.1.27~101-g0780600+dfsg-3ubuntu2 [52.8 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main i386 libldap-common all 2.4.46+dfsg-5ubuntu1 [16.6 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main i386 libldap-2.4-2 i386 2.4.46+dfsg-5ubuntu1 [167 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main i386 libnghttp2-14 i386 1.32.0-1 [83.0 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2 [58.3 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main i386 libcurl4 i386 7.60.0-2ubuntu1 [241 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main i386 libjsoncpp1 i386 1.7.4-3 [82.7 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main i386 librhash0 i386 1.3.6-2 [90.7 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libuv1 i386 1.21.0-2 [71.9 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main i386 cmake i386 3.11.2-1 [3465 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main i386 libtool all 2.4.6-2.1build1 [196 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-autoreconf all 19 [16.1 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive-zip-perl all 1.60-1ubuntu1 [84.6 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main i386 libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-strip-nondeterminism all 0.042-1 [5188 B] Get:100 http://ftpmaster.internal/ubuntu cosmic/main i386 dwz i386 0.12-2 [80.4 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main i386 libcroco3 i386 0.6.12-2 [87.7 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext i386 0.19.8.1-6build1 [902 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main i386 po-debconf all 1.0.20 [232 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main i386 debhelper all 11.3.2ubuntu1 [883 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main i386 python3-lib2to3 all 3.6.6-1 [76.9 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main i386 python3-distutils all 3.6.6-1 [141 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-python all 3.20180326ubuntu1 [88.4 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main i386 libxt6 i386 1:1.1.5-1 [164 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudio2 i386 1.9.4-6 [54.0 kB] Get:111 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libblas3 i386 3.8.0-1build1 [131 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main i386 libboost1.67-dev i386 1.67.0-0ubuntu1 [8364 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/universe i386 libboost-python1.67.0 i386 1.67.0-0ubuntu1 [301 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2.7 i386 2.7.15-1 [1072 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/main i386 libexpat1-dev i386 2.2.5-3 [127 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2.7-dev i386 2.7.15-1 [28.2 MB] Get:117 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython2-dev i386 2.7.15-3 [7800 B] Get:118 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython-dev i386 2.7.15-3 [5896 B] Get:119 http://ftpmaster.internal/ubuntu cosmic/main i386 python2.7-dev i386 2.7.15-1 [286 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic/main i386 python2-dev i386 2.7.15-3 [1236 B] Get:121 http://ftpmaster.internal/ubuntu cosmic/main i386 python-dev i386 2.7.15-3 [1216 B] Get:122 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython3.6 i386 3.6.6-1 [1420 kB] Get:123 http://ftpmaster.internal/ubuntu cosmic/main i386 libpython3.6-dev i386 3.6.6-1 [44.2 MB] Get:124 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libpython3-dev i386 3.6.6-1 [7272 B] Get:125 http://ftpmaster.internal/ubuntu cosmic/main i386 python3.6-dev i386 3.6.6-1 [507 kB] Get:126 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 python3-dev i386 3.6.6-1 [1304 B] Get:127 http://ftpmaster.internal/ubuntu cosmic/universe i386 libboost-python1.67-dev i386 1.67.0-0ubuntu1 [307 kB] Get:128 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libboost-python-dev i386 1.67.0.0ubuntu1 [3224 B] Get:129 http://ftpmaster.internal/ubuntu cosmic/main i386 libpixman-1-0 i386 0.34.0-2 [235 kB] Get:130 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-render0 i386 1.13-1 [15.9 kB] Get:131 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-shm0 i386 1.13-1 [5720 B] Get:132 http://ftpmaster.internal/ubuntu cosmic/main i386 libxrender1 i386 1:0.9.10-1 [19.9 kB] Get:133 http://ftpmaster.internal/ubuntu cosmic/main i386 libcairo2 i386 1.15.10-3 [636 kB] Get:134 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-amdgpu1 i386 2.4.92-1 [22.1 kB] Get:135 http://ftpmaster.internal/ubuntu cosmic/main i386 libpciaccess0 i386 0.14-1 [20.2 kB] Get:136 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-intel1 i386 2.4.92-1 [63.7 kB] Get:137 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-radeon1 i386 2.4.92-1 [23.1 kB] Get:138 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-nouveau2 i386 2.4.92-1 [18.3 kB] Get:139 http://ftpmaster.internal/ubuntu cosmic/main i386 libdrm-dev i386 2.4.92-1 [256 kB] Get:140 http://ftpmaster.internal/ubuntu cosmic/main i386 libwayland-server0 i386 1.15.0-2 [30.5 kB] Get:141 http://ftpmaster.internal/ubuntu cosmic/main i386 libgbm1 i386 18.1.3-1ubuntu1 [25.6 kB] Get:142 http://ftpmaster.internal/ubuntu cosmic/main i386 libglapi-mesa i386 18.1.3-1ubuntu1 [23.2 kB] Get:143 http://ftpmaster.internal/ubuntu cosmic/main i386 libwayland-client0 i386 1.15.0-2 [23.9 kB] Get:144 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libx11-xcb1 i386 2:1.6.5-1 [9420 B] Get:145 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-dri2-0 i386 1.13-1 [7296 B] Get:146 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-dri3-0 i386 1.13-1 [6952 B] Get:147 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-present0 i386 1.13-1 [5696 B] Get:148 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-sync1 i386 1.13-1 [9164 B] Get:149 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-xfixes0 i386 1.13-1 [9712 B] Get:150 http://ftpmaster.internal/ubuntu cosmic/main i386 libxshmfence1 i386 1.3-1 [5180 B] Get:151 http://ftpmaster.internal/ubuntu cosmic/main i386 libegl-mesa0 i386 18.1.3-1ubuntu1 [93.3 kB] Get:152 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgfortran5 i386 8.1.0-11ubuntu1 [556 kB] Get:153 http://ftpmaster.internal/ubuntu cosmic/main i386 libllvm6.0 i386 1:6.0.1-2ubuntu1 [16.5 MB] Get:154 http://ftpmaster.internal/ubuntu cosmic/main i386 libsensors4 i386 1:3.4.0-4 [29.3 kB] Get:155 http://ftpmaster.internal/ubuntu cosmic/main i386 libgl1-mesa-dri i386 18.1.3-1ubuntu1 [6722 kB] Get:156 http://ftpmaster.internal/ubuntu cosmic/main i386 libglvnd0 i386 1.0.0+git20180308-3ubuntu1 [40.5 kB] Get:157 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-glx0 i386 1.13-1 [23.7 kB] Get:158 http://ftpmaster.internal/ubuntu cosmic/main i386 libxdamage1 i386 1:1.1.4-3 [7090 B] Get:159 http://ftpmaster.internal/ubuntu cosmic/main i386 libxfixes3 i386 1:5.0.3-1 [11.2 kB] Get:160 http://ftpmaster.internal/ubuntu cosmic/main i386 libglx-mesa0 i386 18.1.3-1ubuntu1 [142 kB] Get:161 http://ftpmaster.internal/ubuntu cosmic/main i386 libglx0 i386 1.0.0+git20180308-3ubuntu1 [29.8 kB] Get:162 http://ftpmaster.internal/ubuntu cosmic/main i386 libgl1 i386 1.0.0+git20180308-3ubuntu1 [78.4 kB] Get:163 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgl2ps1.4 i386 1.4.0+dfsg1-2 [38.5 kB] Get:164 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgl2ps-dev i386 1.4.0+dfsg1-2 [12.9 kB] Get:165 http://ftpmaster.internal/ubuntu cosmic/main i386 xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:166 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-dev all 2018.4-4 [251 kB] Get:167 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-core-dev all 2018.4-4 [2620 B] Get:168 http://ftpmaster.internal/ubuntu cosmic/main i386 libxau-dev i386 1:1.0.8-1 [10.2 kB] Get:169 http://ftpmaster.internal/ubuntu cosmic/main i386 libxdmcp-dev i386 1:1.1.2-3 [24.9 kB] Get:170 http://ftpmaster.internal/ubuntu cosmic/main i386 xtrans-dev all 1.3.5-1 [70.5 kB] Get:171 http://ftpmaster.internal/ubuntu cosmic/main i386 libpthread-stubs0-dev i386 0.3-4 [4054 B] Get:172 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb1-dev i386 1.13-1 [85.4 kB] Get:173 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libx11-dev i386 2:1.6.5-1 [672 kB] Get:174 http://ftpmaster.internal/ubuntu cosmic/main i386 mesa-common-dev i386 18.1.3-1ubuntu1 [542 kB] Get:175 http://ftpmaster.internal/ubuntu cosmic/main i386 libglvnd-core-dev i386 1.0.0+git20180308-3ubuntu1 [12.7 kB] Get:176 http://ftpmaster.internal/ubuntu cosmic/main i386 libegl1 i386 1.0.0+git20180308-3ubuntu1 [33.8 kB] Get:177 http://ftpmaster.internal/ubuntu cosmic/main i386 libgles2 i386 1.0.0+git20180308-3ubuntu1 [17.0 kB] Get:178 http://ftpmaster.internal/ubuntu cosmic/main i386 libopengl0 i386 1.0.0+git20180308-3ubuntu1 [29.4 kB] Get:179 http://ftpmaster.internal/ubuntu cosmic/main i386 libglvnd-dev i386 1.0.0+git20180308-3ubuntu1 [3392 B] Get:180 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libx11-xcb-dev i386 2:1.6.5-1 [9752 B] Get:181 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-dri3-dev i386 1.13-1 [7672 B] Get:182 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-randr0 i386 1.13-1 [17.9 kB] Get:183 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-render0-dev i386 1.13-1 [19.3 kB] Get:184 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-randr0-dev i386 1.13-1 [21.7 kB] Get:185 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-shape0 i386 1.13-1 [6144 B] Get:186 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-shape0-dev i386 1.13-1 [7372 B] Get:187 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-xfixes0-dev i386 1.13-1 [12.1 kB] Get:188 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-sync-dev i386 1.13-1 [11.0 kB] Get:189 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-present-dev i386 1.13-1 [7180 B] Get:190 http://ftpmaster.internal/ubuntu cosmic/main i386 libxshmfence-dev i386 1.3-1 [3896 B] Get:191 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-dri2-0-dev i386 1.13-1 [8800 B] Get:192 http://ftpmaster.internal/ubuntu cosmic/main i386 libxcb-glx0-dev i386 1.13-1 [29.4 kB] Get:193 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-fixes-dev all 1:2018.4-4 [2620 B] Get:194 http://ftpmaster.internal/ubuntu cosmic/main i386 libxfixes-dev i386 1:5.0.3-1 [11.2 kB] Get:195 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-damage-dev all 1:2018.4-4 [2620 B] Get:196 http://ftpmaster.internal/ubuntu cosmic/main i386 libxdamage-dev i386 1:1.1.4-3 [5174 B] Get:197 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-xext-dev all 2018.4-4 [2620 B] Get:198 http://ftpmaster.internal/ubuntu cosmic/main i386 libxext-dev i386 2:1.3.3-1 [82.8 kB] Get:199 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-xf86vidmode-dev all 2018.4-4 [2632 B] Get:200 http://ftpmaster.internal/ubuntu cosmic/main i386 libxxf86vm-dev i386 1:1.1.4-1 [13.9 kB] Get:201 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-dri2-dev all 2018.4-4 [2620 B] Get:202 http://ftpmaster.internal/ubuntu cosmic/main i386 x11proto-gl-dev all 2018.4-4 [2612 B] Get:203 http://ftpmaster.internal/ubuntu cosmic/main i386 libgl1-mesa-dev i386 18.1.3-1ubuntu1 [4428 B] Get:204 http://ftpmaster.internal/ubuntu cosmic/universe i386 libglew2.0 i386 2.0.0-6 [131 kB] Get:205 http://ftpmaster.internal/ubuntu cosmic/main i386 libglu1-mesa i386 9.0.0-2.1build1 [178 kB] Get:206 http://ftpmaster.internal/ubuntu cosmic/main i386 libglu1-mesa-dev i386 9.0.0-2.1build1 [204 kB] Get:207 http://ftpmaster.internal/ubuntu cosmic/universe i386 libglew-dev i386 2.0.0-6 [120 kB] Get:208 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 liblapack3 i386 3.8.0-1build1 [1961 kB] Get:209 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libopenbabel5 i386 2.4.1+dfsg-2 [3075 kB] Get:210 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libopenbabel-dev i386 2.4.1+dfsg-2 [181 kB] Get:211 http://ftpmaster.internal/ubuntu cosmic/universe i386 qtcore4-l10n all 4:4.8.7+dfsg-7ubuntu1 [617 kB] Get:212 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqtcore4 i386 4:4.8.7+dfsg-7ubuntu1 [1616 kB] Get:213 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-xml i386 4:4.8.7+dfsg-7ubuntu1 [101 kB] Get:214 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqtdbus4 i386 4:4.8.7+dfsg-7ubuntu1 [194 kB] Get:215 http://ftpmaster.internal/ubuntu cosmic/main i386 qtchooser i386 64-ga1b6736-5 [25.6 kB] Get:216 http://ftpmaster.internal/ubuntu cosmic/universe i386 qdbus i386 4:4.8.7+dfsg-7ubuntu1 [30.5 kB] Get:217 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-dbus i386 4:4.8.7+dfsg-7ubuntu1 [6436 B] Get:218 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-network i386 4:4.8.7+dfsg-7ubuntu1 [592 kB] Get:219 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-script i386 4:4.8.7+dfsg-7ubuntu1 [889 kB] Get:220 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-sql i386 4:4.8.7+dfsg-7ubuntu1 [105 kB] Get:221 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-xmlpatterns i386 4:4.8.7+dfsg-7ubuntu1 [1128 kB] Get:222 http://ftpmaster.internal/ubuntu cosmic/main i386 libjbig0 i386 2.1-3.1build1 [27.3 kB] Get:223 http://ftpmaster.internal/ubuntu cosmic/main i386 libtiff5 i386 4.0.9-6 [163 kB] Get:224 http://ftpmaster.internal/ubuntu cosmic/main i386 libxi6 i386 2:1.7.9-1 [31.7 kB] Get:225 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqtgui4 i386 4:4.8.7+dfsg-7ubuntu1 [4353 kB] Get:226 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-declarative i386 4:4.8.7+dfsg-7ubuntu1 [1149 kB] Get:227 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-designer i386 4:4.8.7+dfsg-7ubuntu1 [3716 kB] Get:228 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-qt3support i386 4:4.8.7+dfsg-7ubuntu1 [1116 kB] Get:229 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-dev-bin i386 4:4.8.7+dfsg-7ubuntu1 [1691 kB] Get:230 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-help i386 4:4.8.7+dfsg-7ubuntu1 [216 kB] Get:231 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-scripttools i386 4:4.8.7+dfsg-7ubuntu1 [237 kB] Get:232 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-svg i386 4:4.8.7+dfsg-7ubuntu1 [145 kB] Get:233 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-test i386 4:4.8.7+dfsg-7ubuntu1 [63.6 kB] Get:234 http://ftpmaster.internal/ubuntu cosmic/universe i386 qt4-linguist-tools i386 4:4.8.7+dfsg-7ubuntu1 [884 kB] Get:235 http://ftpmaster.internal/ubuntu cosmic/universe i386 qt4-qmake i386 4:4.8.7+dfsg-7ubuntu1 [1319 kB] Get:236 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-dev i386 4:4.8.7+dfsg-7ubuntu1 [857 kB] Get:237 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-opengl i386 4:4.8.7+dfsg-7ubuntu1 [319 kB] Get:238 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-opengl-dev i386 4:4.8.7+dfsg-7ubuntu1 [22.8 kB] Get:239 http://ftpmaster.internal/ubuntu cosmic/universe i386 libqt4-sql-sqlite i386 4:4.8.7+dfsg-7ubuntu1 [24.5 kB] Get:240 http://ftpmaster.internal/ubuntu cosmic/universe i386 libsymspg1 i386 1.10.3-2 [67.2 kB] Get:241 http://ftpmaster.internal/ubuntu cosmic/universe i386 libsymspg-dev i386 1.10.3-2 [75.4 kB] Get:242 http://ftpmaster.internal/ubuntu cosmic/main i386 libxtst6 i386 2:1.2.3-1 [13.4 kB] Get:243 http://ftpmaster.internal/ubuntu cosmic/main i386 pkg-config i386 0.29.1-0ubuntu2 [45.8 kB] Get:244 http://ftpmaster.internal/ubuntu cosmic/main i386 python-enum34 all 1.1.6-2 [34.8 kB] Get:245 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 python-numpy i386 1:1.14.5-1ubuntu3 [2008 kB] Get:246 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-sip i386 4.19.12+dfsg-1 [77.1 kB] Get:247 http://ftpmaster.internal/ubuntu cosmic/universe i386 sip-dev i386 4.19.12+dfsg-1 [159 kB] Get:248 http://ftpmaster.internal/ubuntu cosmic/universe i386 python-sip-dev i386 4.19.12+dfsg-1 [21.7 kB] Get:249 http://ftpmaster.internal/ubuntu cosmic/universe i386 qt4-dev-tools i386 4:4.8.7+dfsg-7ubuntu1 [3992 kB] Get:250 http://ftpmaster.internal/ubuntu cosmic/main i386 zlib1g-dev i386 1:1.2.11.dfsg-0ubuntu2 [178 kB] Get:251 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libeigen3-dev all 3.3.4-4build1 [810 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 185 MB in 13s (14.3 MB/s) Selecting previously unselected package libpython3.6-minimal:i386. (Reading database ... 13714 files and directories currently installed.) Preparing to unpack .../libpython3.6-minimal_3.6.6-1_i386.deb ... Unpacking libpython3.6-minimal:i386 (3.6.6-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../libexpat1_2.2.5-3_i386.deb ... Unpacking libexpat1:i386 (2.2.5-3) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../python3.6-minimal_3.6.6-1_i386.deb ... Unpacking python3.6-minimal (3.6.6-1) ... Setting up libpython3.6-minimal:i386 (3.6.6-1) ... Setting up libexpat1:i386 (2.2.5-3) ... Setting up python3.6-minimal (3.6.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13961 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.6.6-1_i386.deb ... Unpacking python3-minimal (3.6.6-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.60ubuntu1_all.deb ... 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Setting up libxau6:i386 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libmpdec2:i386 (2.4.2-2) ... Setting up libdbus-1-3:i386 (1.12.2-1ubuntu1) ... Setting up liblzo2-2:i386 (2.10-0.1) ... Setting up libwayland-server0:i386 (1.15.0-2) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libjpeg8:i386 (8c-2ubuntu8) ... Setting up libjsoncpp1:i386 (1.7.4-3) ... Setting up x11proto-dri2-dev (2018.4-4) ... Setting up libpython3.6-stdlib:i386 (3.6.6-1) ... Setting up libsymspg-dev (1.10.3-2) ... Setting up libk5crypto3:i386 (1.16-2build1) ... Setting up fontconfig-config (2.12.6-0ubuntu2) ... Setting up python3.6 (3.6.6-1) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libwind0-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libxshmfence-dev:i386 (1.3-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libarchive13:i386 (3.2.2-4) ... Setting up libeigen3-dev (3.3.4-4build1) ... Setting up libasn1-8-heimdal:i386 (7.5.0+dfsg-2) ... Setting up liblapack3:i386 (3.8.0-1build1) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up qt4-qmake (4:4.8.7+dfsg-7ubuntu1) ... Setting up libhcrypto4-heimdal:i386 (7.5.0+dfsg-2) ... Setting up python2.7 (2.7.15-1) ... Setting up libtiff5:i386 (4.0.9-6) ... Setting up x11proto-xf86vidmode-dev (2018.4-4) ... Setting up libxau-dev:i386 (1:1.0.8-1) ... Setting up autoconf (2.69-11) ... Setting up libqt4-sql:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up file (1:5.33-3) ... Setting up libmng2:i386 (2.0.2-0ubuntu3) ... Setting up libhx509-5-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libdrm2:i386 (2.4.92-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libdrm-intel1:i386 (2.4.92-1) ... Setting up libxdmcp-dev:i386 (1:1.1.2-3) ... Setting up libpython2.7:i386 (2.7.15-1) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:i386 (2:1.0.9-2) ... Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython2-stdlib:i386 (2.7.15-3) ... Setting up libkrb5-3:i386 (1.16-2build1) ... Setting up libpython2.7-dev:i386 (2.7.15-1) ... Setting up libdrm-radeon1:i386 (2.4.92-1) ... Setting up libkrb5-26-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libdrm-nouveau2:i386 (2.4.92-1) ... Setting up python2.7-dev (2.7.15-1) ... Setting up libqtdbus4:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libxcb1:i386 (1.13-1) ... Setting up libheimntlm0-heimdal:i386 (7.5.0+dfsg-2) ... Setting up libpython3.6:i386 (3.6.6-1) ... Setting up libtool (2.4.6-2.1build1) ... Setting up libpython3-stdlib:i386 (3.6.6-1) ... Setting up libxcb-present0:i386 (1.13-1) ... Setting up libfontconfig1:i386 (2.12.6-0ubuntu2) ... Setting up libxcb-dri2-0:i386 (1.13-1) ... Setting up libsm6:i386 (2:1.2.2-1) ... Setting up libxcb-dri3-0:i386 (1.13-1) ... Setting up libxcb-glx0:i386 (1.13-1) ... Setting up libxcb-randr0:i386 (1.13-1) ... Setting up libxcb-xfixes0:i386 (1.13-1) ... Setting up libxcb-render0:i386 (1.13-1) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.6.6-1) ... Setting up libdrm-amdgpu1:i386 (2.4.92-1) ... Setting up libqt4-script:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libdrm-dev:i386 (2.4.92-1) ... Setting up libgbm1:i386 (18.1.3-1ubuntu1) ... Setting up libx11-6:i386 (2:1.6.5-1) ... Setting up libgl1-mesa-dri:i386 (18.1.3-1ubuntu1) ... Setting up libqt4-sql-sqlite:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libpython3.6-dev:i386 (3.6.6-1) ... Setting up python2 (2.7.15-3) ... Setting up qdbus (4:4.8.7+dfsg-7ubuntu1) ... Setting up libxcb-sync1:i386 (1.13-1) ... Setting up libgssapi-krb5-2:i386 (1.16-2build1) ... Setting up libpython2-dev:i386 (2.7.15-3) ... Setting up libpython-stdlib:i386 (2.7.15-3) ... Setting up python2-dev (2.7.15-3) ... Setting up libxcb-shm0:i386 (1.13-1) ... Setting up libxt6:i386 (1:1.1.5-1) ... Setting up libxcb-shape0:i386 (1.13-1) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libxcb1-dev:i386 (1.13-1) ... Setting up libxcb-glx0-dev:i386 (1.13-1) ... Setting up libegl-mesa0:i386 (18.1.3-1ubuntu1) ... Setting up libx11-dev:i386 (2:1.6.5-1) ... Setting up libgssapi3-heimdal:i386 (7.5.0+dfsg-2) ... Setting up python3.6-dev (3.6.6-1) ... Setting up libqt4-dbus:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up python3-lib2to3 (3.6.6-1) ... Setting up libqt4-network:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up python3-distutils (3.6.6-1) ... Setting up python (2.7.15-3) ... Setting up libxcb-sync-dev:i386 (1.13-1) ... Setting up libaudio2:i386 (1.9.4-6) ... Setting up fontconfig (2.12.6-0ubuntu2) ... Regenerating fonts cache... done. Setting up libpython3-dev:i386 (3.6.6-1) ... Setting up libx11-xcb-dev:i386 (2:1.6.5-1) ... Setting up libpython-dev:i386 (2.7.15-3) ... Setting up libxdamage1:i386 (1:1.1.4-3) ... Setting up mesa-common-dev:i386 (18.1.3-1ubuntu1) ... Setting up libxext6:i386 (2:1.3.3-1) ... Setting up libxfixes3:i386 (1:5.0.3-1) ... Setting up python-dev (2.7.15-3) ... Setting up libqt4-xmlpatterns:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up python-numpy (1:1.14.5-1ubuntu3) ... Setting up libxtst6:i386 (2:1.2.3-1) ... Setting up libxcb-dri2-0-dev:i386 (1.13-1) ... Setting up libxcb-render0-dev:i386 (1.13-1) ... Setting up libegl1:i386 (1.0.0+git20180308-3ubuntu1) ... Setting up libxcb-dri3-dev:i386 (1.13-1) ... Setting up libldap-2.4-2:i386 (2.4.46+dfsg-5ubuntu1) ... Setting up libxext-dev:i386 (2:1.3.3-1) ... Setting up python-enum34 (1.1.6-2) ... Setting up libxcb-shape0-dev:i386 (1.13-1) ... Setting up libxxf86vm1:i386 (1:1.1.4-1) ... Setting up libxxf86vm-dev:i386 (1:1.1.4-1) ... Setting up libxfixes-dev:i386 (1:5.0.3-1) ... Setting up dh-python (3.20180326ubuntu1) ... Setting up libglx-mesa0:i386 (18.1.3-1ubuntu1) ... Setting up python-sip (4.19.12+dfsg-1) ... Setting up libxi6:i386 (2:1.7.9-1) ... Setting up libcairo2:i386 (1.15.10-3) ... Setting up libxcb-randr0-dev:i386 (1.13-1) ... Setting up libxcb-xfixes0-dev:i386 (1.13-1) ... Setting up libcurl4:i386 (7.60.0-2ubuntu1) ... Setting up libxdamage-dev:i386 (1:1.1.4-3) ... Setting up python3-dev (3.6.6-1) ... Setting up python-sip-dev (4.19.12+dfsg-1) ... Setting up libopenbabel5 (2.4.1+dfsg-2) ... Setting up libxcb-present-dev:i386 (1.13-1) ... Setting up cmake (3.11.2-1) ... Setting up libglx0:i386 (1.0.0+git20180308-3ubuntu1) ... Setting up libboost-python1.67-dev (1.67.0-0ubuntu1) ... Setting up libopenbabel-dev (2.4.1+dfsg-2) ... Setting up libgl1:i386 (1.0.0+git20180308-3ubuntu1) ... Setting up libglew2.0:i386 (2.0.0-6) ... Setting up libglu1-mesa:i386 (9.0.0-2.1build1) ... Setting up libgl2ps1.4 (1.4.0+dfsg1-2) ... Setting up libboost-python-dev (1.67.0.0ubuntu1) ... Setting up libglvnd-dev:i386 (1.0.0+git20180308-3ubuntu1) ... Setting up libgl1-mesa-dev:i386 (18.1.3-1ubuntu1) ... Setting up libgl2ps-dev (1.4.0+dfsg1-2) ... Setting up libglu1-mesa-dev:i386 (9.0.0-2.1build1) ... Setting up libglew-dev:i386 (2.0.0-6) ... Setting up libqtgui4:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up libqt4-designer:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-help:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up libqt4-svg:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-scripttools:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up libqt4-opengl:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-declarative:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-qt3support:i386 (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-dev-bin (4:4.8.7+dfsg-7ubuntu1) ... Setting up qt4-dev-tools (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-dev (4:4.8.7+dfsg-7ubuntu1) ... Setting up libqt4-opengl-dev (4:4.8.7+dfsg-7ubuntu1) ... Setting up sbuild-build-depends-avogadro-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Processing triggers for systemd (238-5ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-128-generic amd64 (i686) Toolchain package versions: binutils_2.31-1ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-26ubuntu1 g++-8_8.1.0-11ubuntu1 gcc-7_7.3.0-26ubuntu1 gcc-8_8.1.0-11ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-26ubuntu1 libstdc++-8-dev_8.1.0-11ubuntu1 libstdc++6_8.1.0-11ubuntu1 linux-libc-dev_4.17.0-5.6 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha2 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.31-1ubuntu1 binutils-common_2.31-1ubuntu1 binutils-i686-linux-gnu_2.31-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 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libopenbabel-dev_2.4.1+dfsg-2 libopenbabel5_2.4.1+dfsg-2 libopengl0_1.0.0+git20180308-3ubuntu1 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpciaccess0_0.14-1 libpcre3_2:8.39-10ubuntu2 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libpng16-16_1.6.34-2 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-1 libpthread-stubs0-dev_0.3-4 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-1 libpython2.7-dev_2.7.15-1 libpython2.7-minimal_2.7.15-1 libpython2.7-stdlib_2.7.15-1 libpython3-dev_3.6.6-1 libpython3-stdlib_3.6.6-1 libpython3.6_3.6.6-1 libpython3.6-dev_3.6.6-1 libpython3.6-minimal_3.6.6-1 libpython3.6-stdlib_3.6.6-1 libqt4-dbus_4:4.8.7+dfsg-7ubuntu1 libqt4-declarative_4:4.8.7+dfsg-7ubuntu1 libqt4-designer_4:4.8.7+dfsg-7ubuntu1 libqt4-dev_4:4.8.7+dfsg-7ubuntu1 libqt4-dev-bin_4:4.8.7+dfsg-7ubuntu1 libqt4-help_4:4.8.7+dfsg-7ubuntu1 libqt4-network_4:4.8.7+dfsg-7ubuntu1 libqt4-opengl_4:4.8.7+dfsg-7ubuntu1 libqt4-opengl-dev_4:4.8.7+dfsg-7ubuntu1 libqt4-qt3support_4:4.8.7+dfsg-7ubuntu1 libqt4-script_4:4.8.7+dfsg-7ubuntu1 libqt4-scripttools_4:4.8.7+dfsg-7ubuntu1 libqt4-sql_4:4.8.7+dfsg-7ubuntu1 libqt4-sql-sqlite_4:4.8.7+dfsg-7ubuntu1 libqt4-svg_4:4.8.7+dfsg-7ubuntu1 libqt4-test_4:4.8.7+dfsg-7ubuntu1 libqt4-xml_4:4.8.7+dfsg-7ubuntu1 libqt4-xmlpatterns_4:4.8.7+dfsg-7ubuntu1 libqtcore4_4:4.8.7+dfsg-7ubuntu1 libqtdbus4_4:4.8.7+dfsg-7ubuntu1 libqtgui4_4:4.8.7+dfsg-7ubuntu1 libquadmath0_8.1.0-11ubuntu1 libreadline7_7.0-5 librhash0_1.3.6-2 libroken18-heimdal_7.5.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.3-3ubuntu1 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsensors4_1:3.4.0-4 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsm6_2:1.2.2-1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-26ubuntu1 libstdc++-8-dev_8.1.0-11ubuntu1 libstdc++6_8.1.0-11ubuntu1 libsymspg-dev_1.10.3-2 libsymspg1_1.10.3-2 libsystemd0_238-5ubuntu2 libtasn1-6_4.13-3 libtiff5_4.0.9-6 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1build1 libubsan0_7.3.0-26ubuntu1 libubsan1_8.1.0-11ubuntu1 libudev1_238-5ubuntu2 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu1 libuv1_1.21.0-2 libwayland-client0_1.15.0-2 libwayland-server0_1.15.0-2 libwind0-heimdal_7.5.0+dfsg-2 libx11-6_2:1.6.5-1 libx11-data_2:1.6.5-1 libx11-dev_2:1.6.5-1 libx11-xcb-dev_2:1.6.5-1 libx11-xcb1_2:1.6.5-1 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb-dri2-0_1.13-1 libxcb-dri2-0-dev_1.13-1 libxcb-dri3-0_1.13-1 libxcb-dri3-dev_1.13-1 libxcb-glx0_1.13-1 libxcb-glx0-dev_1.13-1 libxcb-present-dev_1.13-1 libxcb-present0_1.13-1 libxcb-randr0_1.13-1 libxcb-randr0-dev_1.13-1 libxcb-render0_1.13-1 libxcb-render0-dev_1.13-1 libxcb-shape0_1.13-1 libxcb-shape0-dev_1.13-1 libxcb-shm0_1.13-1 libxcb-sync-dev_1.13-1 libxcb-sync1_1.13-1 libxcb-xfixes0_1.13-1 libxcb-xfixes0-dev_1.13-1 libxcb1_1.13-1 libxcb1-dev_1.13-1 libxdamage-dev_1:1.1.4-3 libxdamage1_1:1.1.4-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxfixes-dev_1:5.0.3-1 libxfixes3_1:5.0.3-1 libxi6_2:1.7.9-1 libxml2_2.9.4+dfsg1-7build1 libxrender1_1:0.9.10-1 libxshmfence-dev_1.3-1 libxshmfence1_1.3-1 libxt6_1:1.1.5-1 libxtst6_2:1.2.3-1 libxxf86vm-dev_1:1.1.4-1 libxxf86vm1_1:1.1.4-1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.17.0-5.6 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.2.1-1.1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mesa-common-dev_18.1.3-1ubuntu1 mime-support_3.60ubuntu1 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build2 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_141 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python_2.7.15-3 python-dev_2.7.15-3 python-enum34_1.1.6-2 python-minimal_2.7.15-3 python-numpy_1:1.14.5-1ubuntu3 python-sip_4.19.12+dfsg-1 python-sip-dev_4.19.12+dfsg-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-1 python2.7-dev_2.7.15-1 python2.7-minimal_2.7.15-1 python3_3.6.6-1 python3-dev_3.6.6-1 python3-distutils_3.6.6-1 python3-lib2to3_3.6.6-1 python3-minimal_3.6.6-1 python3.6_3.6.6-1 python3.6-dev_3.6.6-1 python3.6-minimal_3.6.6-1 qdbus_4:4.8.7+dfsg-7ubuntu1 qt4-dev-tools_4:4.8.7+dfsg-7ubuntu1 qt4-linguist-tools_4:4.8.7+dfsg-7ubuntu1 qt4-qmake_4:4.8.7+dfsg-7ubuntu1 qtchooser_64-ga1b6736-5 qtcore4-l10n_4:4.8.7+dfsg-7ubuntu1 readline-common_7.0-5 sbuild-build-depends-avogadro-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 sip-dev_4.19.12+dfsg-1 systemd_238-5ubuntu2 systemd-sysv_238-5ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 ucf_3.0038 util-linux_2.32-0.1ubuntu1 x11-common_1:7.7+19ubuntu8 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-dri2-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-gl-dev_2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Wed Jul 18 09:03:04 2018 UTC gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./avogadro_1.2.0-4.dsc dpkg-source: info: extracting avogadro in avogadro-1.2.0 dpkg-source: info: unpacking avogadro_1.2.0.orig.tar.gz dpkg-source: info: unpacking avogadro_1.2.0-4.debian.tar.xz dpkg-source: info: applying probe-X11-paths-with-find_package.patch dpkg-source: info: applying boost148.patch dpkg-source: info: applying eigen3.patch dpkg-source: info: applying gcc-version.diff dpkg-source: info: applying libmsymfloat.patch dpkg-source: info: applying eigen3_lib.patch dpkg-source: info: applying libsymspg.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15143968 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15143968 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15143968 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package avogadro dpkg-buildpackage: info: source version 1.2.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build avogadro-1.2.0 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with python2 debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean conf.log conf.pri make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --with python2 dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- \ -DENABLE_GLSL=ON \ -DENABLE_RPATH=OFF \ -DENABLE_UPDATE_CHECKER=OFF \ -DPYTHON_EXECUTABLE=/usr/bin/python2.7 \ -DPYTHON_LIBRARY=/usr/lib/i386-linux-gnu/libpython2.7.so \ -DPYTHON_INCLUDE_DIR=/usr/include/python2.7/ cd obj-i686-linux-gnu && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DENABLE_GLSL=ON -DENABLE_RPATH=OFF -DENABLE_UPDATE_CHECKER=OFF -DPYTHON_EXECUTABLE=/usr/bin/python2.7 -DPYTHON_LIBRARY=/usr/lib/i386-linux-gnu/libpython2.7.so -DPYTHON_INCLUDE_DIR=/usr/include/python2.7/ -- The C compiler identification is GNU 8.1.0 -- The CXX compiler identification is GNU 8.1.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- The build type is None -- Performing Test HAVE_NO_RTTI -- Performing Test HAVE_NO_RTTI - Success -- Performing Test HAVE_RTTI -- Performing Test HAVE_RTTI - Success -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Performing Test COMPILES_WITHOUT_FPERMISSIVE -- Performing Test COMPILES_WITHOUT_FPERMISSIVE - Failed -- Looking for Q_WS_X11 -- Looking for Q_WS_X11 - found -- Looking for Q_WS_WIN -- Looking for Q_WS_WIN - not found -- Looking for Q_WS_QWS -- Looking for Q_WS_QWS - not found -- Looking for Q_WS_MAC -- Looking for Q_WS_MAC - not found -- Found Qt4: /usr/bin/qmake (found suitable version "4.8.7", minimum required is "4.6.0") CMake Warning (dev) at /usr/share/cmake-3.11/Modules/FindOpenGL.cmake:270 (message): Policy CMP0072 is not set: FindOpenGL prefers GLVND by default when available. Run "cmake --help-policy CMP0072" for policy details. Use the cmake_policy command to set the policy and suppress this warning. FindOpenGL found both a legacy GL library: OPENGL_gl_LIBRARY: /usr/lib/i386-linux-gnu/libGL.so and GLVND libraries for OpenGL and GLX: OPENGL_opengl_LIBRARY: /usr/lib/i386-linux-gnu/libOpenGL.so OPENGL_glx_LIBRARY: /usr/lib/i386-linux-gnu/libGLX.so OpenGL_GL_PREFERENCE has not been set to "GLVND" or "LEGACY", so for compatibility with CMake 3.10 and below the legacy GL library will be used. Call Stack (most recent call first): CMakeLists.txt:227 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Found OpenGL: /usr/lib/i386-linux-gnu/libOpenGL.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Found X11: /usr/lib/i386-linux-gnu/libX11.so -- Found lupdate: /usr/bin/lupdate-qt4 -- Found lrelease: /usr/bin/lrelease-qt4 -- Found lconvert: /usr/bin/lconvert -- Found Eigen3: /usr/include/eigen3 (Required is at least version "2.91.0") -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.11") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Checking for module 'openbabel-2.0>=2.3.0' -- Found openbabel-2.0, version 2.4.1 -- Found OpenBabel 2.3 or later: openbabel -- Found Git revision is: -- Building released version. -- Searching for python dependencies... -- [1/5] Boost Python -- Boost version: 1.67.0 -- Found the following Boost libraries: -- python -- Boost Python found... -- [2/5] Python Libraries -- Found PythonLibs: /usr/lib/i386-linux-gnu/libpython2.7.so -- [3/5] Python Interpreter -- Found PythonInterp: /usr/bin/python2.7 (found version "2.7.15") -- [4/5] Numpy Module -- Numpy headers found -- [5/5] SIP Module -- SIP version 267020 found -- Found SIP: /usr/include/python2.7 -- All python dependencies found - Python support enabled -- GLEW found and GLSL support enabled -- Threaded OpenGL rendering not enabled -- Setting new boost python libraries failed to create symbolic link '/<>/obj-i686-linux-gnu/libavogadro/include/avogadro//<>/obj-i686-linux-gnu/libavogadro/src/config.h': No such file or directory -- Enabled python terminal -- Found Qt4: /usr/bin/qmake (found suitable version "4.8.7", minimum required is "4.6") -- Linking in static plugins: bsdyengine;navigatetool;elementcolor -- Python site-packages directory: /usr/lib/python2.7/dist-packages -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- docbook tools not found, doc targets disabled -- Configuring done CMake Warning (dev) in libavogadro/src/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "avogadro" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: openbabel;/usr/lib/i386-linux-gnu/libQtOpenGL.so;/usr/lib/i386-linux-gnu/libQtGui.so;/usr/lib/i386-linux-gnu/libQtCore.so;/usr/lib/i386-linux-gnu/libGL.so;/usr/lib/i386-linux-gnu/libGLU.so;/usr/lib/i386-linux-gnu/libGLEW.so;/usr/lib/i386-linux-gnu/libpython2.7.so;/usr/lib/i386-linux-gnu/libboost_python.so;bsdyengine;navigatetool;elementcolor LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in libavogadro/src/extensions/surfaces/openqube/CMakeLists.txt: Policy CMP0022 is not set: INTERFACE_LINK_LIBRARIES defines the link interface. Run "cmake --help-policy CMP0022" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Target "OpenQube" has an INTERFACE_LINK_LIBRARIES property which differs from its LINK_INTERFACE_LIBRARIES properties. INTERFACE_LINK_LIBRARIES: $<$>:/usr/lib/i386-linux-gnu/libQtCore.so>;$<$:/usr/lib/i386-linux-gnu/libQtCore.so>;$<$>:/usr/lib/i386-linux-gnu/libQtGui.so>;$<$:/usr/lib/i386-linux-gnu/libQtGui.so> LINK_INTERFACE_LIBRARIES: This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at libavogadro/src/extensions/crystallography/CMakeLists.txt:39 (add_dependencies): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "symspg" of target "crystallographyextension" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/obj-i686-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build -a cd obj-i686-linux-gnu && make -j4 make[1]: Entering directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -H/<> -B/<>/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-i686-linux-gnu/CMakeFiles /<>/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend [ 0%] Generating moc_elementcolor.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx_parameters make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/symmetry/libmsym /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/DependInfo.cmake --color= [ 1%] Generating qrc_navigatetool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name navigatetool -o /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx /<>/libavogadro/src/tools/navigatetool.qrc [ 1%] Generating ui_bsdysettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/engines/ui_bsdysettingswidget.h /<>/libavogadro/src/engines/bsdysettingswidget.ui [ 1%] Generating moc_navigatetool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= [ 2%] Generating moc_bsdyengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx_parameters Scanning dependencies of target msym make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/character_table.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/character_table.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/character_table.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target elementcolor make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= [ 2%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/elementcolor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/elementcolor.cpp.o -c /<>/libavogadro/src/colors/elementcolor.cpp [ 2%] Generating ui_navigatesettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/tools/ui_navigatesettingswidget.h /<>/libavogadro/src/tools/navigatesettingswidget.ui cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/navigatetool.dir/DependInfo.cmake --color= In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/elementcolor.h:29, from /<>/libavogadro/src/colors/elementcolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/context.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/context.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/context.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/context.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target navigatetool make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build Scanning dependencies of target bsdyengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 2%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/navigatetool.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/navigatetool.cpp.o -c /<>/libavogadro/src/tools/navigatetool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/tools/navigatetool.h:29, from /<>/libavogadro/src/tools/navigatetool.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o -c /<>/libavogadro/src/engines/bsdyengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/bsdyengine.h:28, from /<>/libavogadro/src/engines/bsdyengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/elements.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/elements.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/elements.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/string.h:26, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/elements.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/equivalence_set.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/equivalence_set.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/equivalence_set.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/geometry.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/geometry.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/geometry.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/linalg.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/linalg.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/linalg.c:12: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 2%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/msym.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/msym.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/msym.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/msym_error.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/msym_error.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/msym_error.c:12: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/orbital.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/orbital.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/orbital.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/permutation.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/permutation.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/permutation.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/point_group.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/point_group.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/point_group.c:12: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building CXX object libavogadro/src/colors/CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/elementcolor.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_elementcolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetrize.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symmetrize.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdlib.h:25, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/symmetrize.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Linking CXX static library elementcolor.a cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -P CMakeFiles/elementcolor.dir/cmake_clean_target.cmake cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/elementcolor.dir/link.txt --verbose=1 /usr/bin/ar qc elementcolor.a CMakeFiles/elementcolor.dir/elementcolor.cpp.o CMakeFiles/elementcolor.dir/moc_elementcolor.cxx.o /usr/bin/ranlib elementcolor.a make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symmetry.c.o [ 3%] Built target elementcolor make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symmetry.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c make[3]: Entering directory '/<>/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/symop.h:16, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.h:15, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/symmetry.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Generating moc_slaterset.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx_parameters [ 3%] Generating moc_basisset.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx_parameters [ 3%] Generating moc_gaussianset.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces/openqube /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= Scanning dependencies of target OpenQube make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/atom.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/atom.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/atom.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, from /usr/include/c++/8/vector:60, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:26, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building C object libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/src/symop.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry/libmsym -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c99 -fPIC -o CMakeFiles/msym.dir/src/symop.c.o -c /<>/libavogadro/src/extensions/symmetry/libmsym/src/symop.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from /<>/libavogadro/src/extensions/symmetry/libmsym/src/symop.c:11: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/eyecandy.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/eyecandy.cpp.o -c /<>/libavogadro/src/tools/eyecandy.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:66, from /<>/libavogadro/src/tools/eyecandy.h:30, from /<>/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Linking C static library libmsym.a cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -P CMakeFiles/msym.dir/cmake_clean_target.cmake cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/libmsym && /usr/bin/cmake -E cmake_link_script CMakeFiles/msym.dir/link.txt --verbose=1 /usr/bin/ar qc libmsym.a CMakeFiles/msym.dir/src/character_table.c.o CMakeFiles/msym.dir/src/context.c.o CMakeFiles/msym.dir/src/elements.c.o CMakeFiles/msym.dir/src/equivalence_set.c.o CMakeFiles/msym.dir/src/geometry.c.o CMakeFiles/msym.dir/src/linalg.c.o CMakeFiles/msym.dir/src/msym.c.o CMakeFiles/msym.dir/src/msym_error.c.o CMakeFiles/msym.dir/src/orbital.c.o CMakeFiles/msym.dir/src/permutation.c.o CMakeFiles/msym.dir/src/point_group.c.o CMakeFiles/msym.dir/src/symmetrize.c.o CMakeFiles/msym.dir/src/symmetry.c.o CMakeFiles/msym.dir/src/symop.c.o /usr/bin/ranlib libmsym.a make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 3%] Built target msym [ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/navigatetool.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_navigatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basisset.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basisset.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/basisset.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:66, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/basisset.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building CXX object libavogadro/src/engines/CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/bsdyengine.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_bsdyengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building CXX object libavogadro/src/tools/CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -DQT_STATICPLUGIN -fPIC -o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_navigatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/basissetloader.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/basissetloader.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:66, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/basissetloader.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/cube.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/cube.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/cube.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, from /usr/include/c++/8/vector:60, from /<>/libavogadro/src/extensions/surfaces/openqube/cube.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/cube.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Linking CXX static library bsdyengine.a cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -P CMakeFiles/bsdyengine.dir/cmake_clean_target.cmake cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/bsdyengine.dir/link.txt --verbose=1 /usr/bin/ar qc bsdyengine.a CMakeFiles/bsdyengine.dir/bsdyengine.cpp.o CMakeFiles/bsdyengine.dir/moc_bsdyengine.cxx.o /usr/bin/ranlib bsdyengine.a make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 3%] Built target bsdyengine make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/swcntbuilder/tubegen /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= Scanning dependencies of target tubegen make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 3%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Bitmap.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/Bitmap.c.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/Bitmap.c [ 3%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Core3DMath.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/Core3DMath.c.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/Core3DMath.c [ 3%] Building C object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/eprintf.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -w -o CMakeFiles/tubegen.dir/eprintf.c.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/eprintf.c [ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/ANSR.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/ANSR.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/ANSR.cpp [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessukout.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessukout.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:66, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/gamessukout.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/gamessukout.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 3%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/Cell.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/Cell.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/Cell.cpp [ 3%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gamessus.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gamessus.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /<>/libavogadro/src/extensions/surfaces/openqube/gamessus.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/gamessus.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/CrystalCell.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/CrystalCell.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/CrystalCell.cpp [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/diamond.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/diamond.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/diamond.cpp [ 4%] Linking CXX static library navigatetool.a [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/fcc.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/fcc.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/fcc.cpp cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -P CMakeFiles/navigatetool.dir/cmake_clean_target.cmake cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/navigatetool.dir/link.txt --verbose=1 /usr/bin/ar qc navigatetool.a CMakeFiles/navigatetool.dir/navigatetool.cpp.o CMakeFiles/navigatetool.dir/eyecandy.cpp.o CMakeFiles/navigatetool.dir/moc_navigatetool.cxx.o CMakeFiles/navigatetool.dir/qrc_navigatetool.cxx.o /usr/bin/ranlib navigatetool.a make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 4%] Built target navigatetool [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/graphite.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/graphite.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/graphite.cpp [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubeGen.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubeGen.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/TubeGen.cpp [ 4%] Building CXX object libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/TubuleBasis.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -w -o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/tubegen/TubuleBasis.cpp [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/orca.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/orca.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/orca.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qstringlist.h:45, from /usr/include/qt4/QtCore/QStringList:1, from /<>/libavogadro/src/extensions/surfaces/openqube/orca.h:20, from /<>/libavogadro/src/extensions/surfaces/openqube/orca.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /<>/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/gaussianfchk.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/gaussianset.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/gaussianset.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:66, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/gaussianset.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Linking CXX static library libtubegen.a cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -P CMakeFiles/tubegen.dir/cmake_clean_target.cmake cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen && /usr/bin/cmake -E cmake_link_script CMakeFiles/tubegen.dir/link.txt --verbose=1 /usr/bin/ar qc libtubegen.a CMakeFiles/tubegen.dir/Bitmap.c.o CMakeFiles/tubegen.dir/Core3DMath.c.o CMakeFiles/tubegen.dir/eprintf.c.o CMakeFiles/tubegen.dir/ANSR.cpp.o CMakeFiles/tubegen.dir/Cell.cpp.o CMakeFiles/tubegen.dir/CrystalCell.cpp.o CMakeFiles/tubegen.dir/diamond.cpp.o CMakeFiles/tubegen.dir/fcc.cpp.o CMakeFiles/tubegen.dir/graphite.cpp.o CMakeFiles/tubegen.dir/TubeGen.cpp.o CMakeFiles/tubegen.dir/TubuleBasis.cpp.o /usr/bin/ranlib libtubegen.a make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 5%] Built target tubegen [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molden.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/molden.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/molden.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:66, from /<>/libavogadro/src/extensions/surfaces/openqube/molden.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/molden.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/molecule.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/molecule.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/molecule.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:66, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/mopacaux.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/mopacaux.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qtextstream.h:45, from /usr/include/qt4/QtCore/QTextStream:1, from /<>/libavogadro/src/extensions/surfaces/openqube/mopacaux.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/mopacaux.cpp:17: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 5%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/slaterset.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/slaterset.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:66, from /<>/libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /<>/libavogadro/src/extensions/surfaces/openqube/slaterset.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 5%] Generating qrc_pythontool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name pythontool -o /<>/obj-i686-linux-gnu/libavogadro/src/qrc_pythontool.cxx /<>/libavogadro/src/pythontool.qrc [ 5%] Generating moc_animation.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_animation.cxx_parameters [ 5%] Generating moc_atom.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_atom.cxx_parameters [ 6%] Generating moc_bond.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_bond.cxx_parameters [ 6%] Generating moc_color.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_color.cxx_parameters [ 6%] Generating moc_colorbutton.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_colorbutton.cxx_parameters [ 6%] Generating moc_cube.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_cube.cxx_parameters [ 6%] Generating moc_dockextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_dockextension.cxx_parameters [ 6%] Generating moc_dockwidget.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_dockwidget.cxx_parameters [ 6%] Generating moc_elementdetail_p.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx_parameters [ 6%] Generating moc_elementtranslator.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_elementtranslator.cxx_parameters [ 6%] Generating moc_engine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_engine.cxx_parameters [ 7%] Generating moc_extension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_extension.cxx_parameters [ 7%] Generating moc_fragment.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_fragment.cxx_parameters [ 7%] Generating moc_glwidget.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_glwidget.cxx_parameters [ 7%] Generating moc_mesh.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_mesh.cxx_parameters [ 7%] Generating moc_meshgenerator.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_meshgenerator.cxx_parameters [ 7%] Generating moc_molecule.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_molecule.cxx_parameters [ 7%] Generating moc_moleculefile.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_moleculefile.cxx_parameters [ 7%] Generating moc_periodictablescene_p.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx_parameters [ 7%] Generating moc_periodictableview.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_periodictableview.cxx_parameters [ 8%] Generating moc_plotwidget.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_plotwidget.cxx_parameters [ 8%] Generating moc_plugin.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_plugin.cxx_parameters [ 8%] Generating moc_pluginmanager.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_pluginmanager.cxx_parameters [ 8%] Generating moc_primitive.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_primitive.cxx_parameters [ 8%] Generating moc_protein.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_protein.cxx_parameters [ 8%] Generating moc_readfilethread_p.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx_parameters [ 8%] Generating moc_residue.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_residue.cxx_parameters [ 8%] Generating moc_textmatrixeditor.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx_parameters [ 8%] Generating moc_tool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_tool.cxx_parameters [ 8%] Generating moc_toolgroup.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_toolgroup.cxx_parameters [ 9%] Generating moc_zmatrix.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_zmatrix.cxx_parameters [ 9%] Generating moc_pythonengine_p.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx_parameters [ 9%] Generating moc_pythonerror.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_pythonerror.cxx_parameters [ 9%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_basisset.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:66, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_basisset.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 9%] Generating moc_pythontool_p.cxx [ 9%] Generating moc_pythonextension_p.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_pythontool_p.cxx_parameters cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx_parameters [ 9%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:66, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/gaussianset.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_gaussianset.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 9%] Generating libavogadro_ar.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ar.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ar.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ar.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ar.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ar.qm [ 9%] Generating libavogadro_bg.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/bg.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_bg.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_bg.ts Scanning directory '/<>/libavogadro/src'... [ 9%] Generating libavogadro_bs.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/bs.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_bs.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_bs.ts Scanning directory '/<>/libavogadro/src'... [ 9%] Generating libavogadro_ca.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ca.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_bg.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_bg.qm [ 10%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DOpenQube_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:66, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/atom.h:24, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/molecule.h:24, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/basisset.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/../../../../../../libavogadro/src/extensions/surfaces/openqube/slaterset.h:22, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/moc_slaterset.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_bs.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_bs.qm [ 11%] Generating libavogadro_ca@valencia.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ca@valencia.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca.qm [ 11%] Generating libavogadro_cs.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/cs.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_cs.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_cs.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca@valencia.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ca@valencia.qm [ 11%] Generating libavogadro_da.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/da.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_da.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_da.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_cs.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_cs.qm [ 11%] Generating libavogadro_de.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/de.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_de.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_de.ts Scanning directory '/<>/libavogadro/src'... [ 11%] Generating libavogadro_el.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/el.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_el.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_el.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_da.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_da.qm [ 11%] Generating libavogadro_en_AU.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/en_AU.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_AU.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_AU.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_de.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_de.qm [ 11%] Generating libavogadro_en_CA.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/en_CA.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_CA.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_el.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_el.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_CA.ts Scanning directory '/<>/libavogadro/src'... [ 11%] Generating libavogadro_en_GB.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/en_GB.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_GB.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_GB.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_AU.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_AU.qm [ 11%] Generating libavogadro_es.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/es.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_es.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_es.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_CA.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_CA.qm [ 11%] Generating libavogadro_et.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/et.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_et.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_GB.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_en_GB.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_et.ts Scanning directory '/<>/libavogadro/src'... [ 12%] Generating libavogadro_eu.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/eu.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_eu.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_eu.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_es.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_es.qm [ 12%] Generating libavogadro_fi.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/fi.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_fi.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_fi.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_et.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_et.qm [ 12%] Generating libavogadro_fr.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/fr.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_fr.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_fr.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_eu.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_eu.qm [ 12%] Generating libavogadro_gl.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/gl.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_gl.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_gl.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_fi.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_fi.qm [ 12%] Generating libavogadro_he.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/he.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_he.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_he.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_fr.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_fr.qm [ 12%] Generating libavogadro_hi.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/hi.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_hi.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_hi.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_gl.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_gl.qm Scanning directory '/<>/libavogadro/src'... [ 12%] Generating libavogadro_hu.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/hu.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_hu.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_hu.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_he.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_he.qm [ 12%] Generating libavogadro_id.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/id.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_id.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_id.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_hi.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_hi.qm [ 12%] Generating libavogadro_it.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/it.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_it.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_it.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_hu.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_hu.qm Scanning directory '/<>/libavogadro/src'... [ 13%] Generating libavogadro_ja.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ja.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ja.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ja.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_id.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_id.qm [ 13%] Generating libavogadro_kn.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/kn.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_kn.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_kn.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_it.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_it.qm [ 13%] Generating libavogadro_ko.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ko.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ko.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ko.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ja.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ja.qm Scanning directory '/<>/libavogadro/src'... [ 13%] Generating libavogadro_ms.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ms.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ms.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ms.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_kn.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_kn.qm [ 13%] Generating libavogadro_nb.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/nb.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_nb.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_nb.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ko.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ko.qm [ 13%] Generating libavogadro_nl.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/nl.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_nl.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_nl.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ms.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ms.qm Scanning directory '/<>/libavogadro/src'... [ 13%] Generating libavogadro_oc.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/oc.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_oc.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_oc.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_nb.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_nb.qm [ 13%] Generating libavogadro_pl.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/pl.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_pl.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_pl.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_nl.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_nl.qm [ 13%] Generating libavogadro_pt.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/pt.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_oc.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_oc.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt.ts Scanning directory '/<>/libavogadro/src'... [ 14%] Generating libavogadro_pt_BR.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/pt_BR.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_pl.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_pl.qm [ 14%] Generating libavogadro_ru.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ru.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ru.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ru.ts [ 14%] Generating libavogadro_sk.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/sk.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sk.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sk.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt_BR.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_pt_BR.qm [ 14%] Generating libavogadro_sl.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/sl.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sl.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sl.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ru.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ru.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sk.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sk.qm [ 14%] Generating libavogadro_sq.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/sq.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sq.ts [ 14%] Generating libavogadro_sr.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/sr.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sr.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sq.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sr.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sl.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sl.qm [ 14%] Generating libavogadro_sv.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/sv.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sv.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sv.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sq.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sq.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sr.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sr.qm [ 14%] Generating libavogadro_th.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/th.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_th.ts [ 14%] Generating libavogadro_tr.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/tr.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_tr.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_th.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sv.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_sv.qm Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_tr.ts Scanning directory '/<>/libavogadro/src'... [ 14%] Generating libavogadro_ug.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/ug.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ug.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ug.ts Scanning directory '/<>/libavogadro/src'... [ 14%] Linking CXX shared library ../../../../../lib/libavogadro_OpenQube.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenQube.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libavogadro_OpenQube.so.0 -o ../../../../../lib/libavogadro_OpenQube.so.0.1.0 CMakeFiles/OpenQube.dir/atom.cpp.o CMakeFiles/OpenQube.dir/basisset.cpp.o CMakeFiles/OpenQube.dir/basissetloader.cpp.o CMakeFiles/OpenQube.dir/cube.cpp.o CMakeFiles/OpenQube.dir/gamessukout.cpp.o CMakeFiles/OpenQube.dir/gamessus.cpp.o CMakeFiles/OpenQube.dir/orca.cpp.o CMakeFiles/OpenQube.dir/gaussianfchk.cpp.o CMakeFiles/OpenQube.dir/gaussianset.cpp.o CMakeFiles/OpenQube.dir/molden.cpp.o CMakeFiles/OpenQube.dir/molecule.cpp.o CMakeFiles/OpenQube.dir/mopacaux.cpp.o CMakeFiles/OpenQube.dir/slaterset.cpp.o CMakeFiles/OpenQube.dir/moc_basisset.cxx.o CMakeFiles/OpenQube.dir/moc_gaussianset.cxx.o CMakeFiles/OpenQube.dir/moc_slaterset.cxx.o -lQtCore -lQtGui cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_th.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_th.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_tr.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_tr.qm [ 15%] Generating libavogadro_uk.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/uk.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_uk.ts [ 15%] Generating libavogadro_vi.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/vi.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_vi.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ug.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_ug.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_uk.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_vi.ts Scanning directory '/<>/libavogadro/src'... [ 15%] Generating libavogadro_zh_CN.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/zh_CN.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_symlink_library ../../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../../lib/libavogadro_OpenQube.so.0 ../../../../../lib/libavogadro_OpenQube.so make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 15%] Built target OpenQube make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces/openqube /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/DependInfo.cmake --color= Scanning dependencies of target qube make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 15%] Building CXX object libavogadro/src/extensions/surfaces/openqube/CMakeFiles/qube.dir/qube.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/qube.dir/qube.cpp.o -c /<>/libavogadro/src/extensions/surfaces/openqube/qube.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/iostream:38, from /<>/libavogadro/src/extensions/surfaces/openqube/qube.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_uk.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_uk.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_CN.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_CN.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_vi.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_vi.qm [ 15%] Generating libavogadro_zh_TW.qm cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lconvert -i /<>/i18n/libavogadro/zh_TW.po -o /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lupdate-qt4 /<>/libavogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts Scanning directory '/<>/libavogadro/src'... cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_TW.ts -qm /<>/obj-i686-linux-gnu/libavogadro/src/libavogadro_zh_TW.qm cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src /<>/obj-i686-linux-gnu/libavogadro/src/CMakeFiles/avogadro.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/CMakeFiles/avogadro.dir/build.make libavogadro/src/CMakeFiles/avogadro.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/animation.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/animation.cpp.o -c /<>/libavogadro/src/animation.cpp [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/bond.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/bond.cpp.o -c /<>/libavogadro/src/bond.cpp [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/atom.cpp.o In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/libavogadro/src/global.h:29, from /<>/libavogadro/src/animation.h:29, from /<>/libavogadro/src/animation.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/atom.cpp.o -c /<>/libavogadro/src/atom.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/bond.h:31, from /<>/libavogadro/src/bond.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/atom.h:31, from /<>/libavogadro/src/atom.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 15%] Linking CXX executable ../../../../../bin/qube cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube && /usr/bin/cmake -E cmake_link_script CMakeFiles/qube.dir/link.txt --verbose=1 /usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -rdynamic CMakeFiles/qube.dir/qube.cpp.o -o ../../../../../bin/qube -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../../../lib/libavogadro_OpenQube.so.0.1.0 -lQtOpenGL -lQtGui -lQtCore make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 15%] Built target qube [ 15%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/camera.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/camera.cpp.o -c /<>/libavogadro/src/camera.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/camera.h:35, from /<>/libavogadro/src/camera.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/color.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/color.cpp.o -c /<>/libavogadro/src/color.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/color.h:32, from /<>/libavogadro/src/color.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/colorbutton.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/colorbutton.cpp.o -c /<>/libavogadro/src/colorbutton.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colorbutton.h:31, from /<>/libavogadro/src/colorbutton.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cube.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/cube.cpp.o -c /<>/libavogadro/src/cube.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/cube.h:29, from /<>/libavogadro/src/cube.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/cylinder_p.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/cylinder_p.cpp.o -c /<>/libavogadro/src/cylinder_p.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/cylinder_p.h:30, from /<>/libavogadro/src/cylinder_p.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockextension.cpp.o -c /<>/libavogadro/src/dockextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/plugin.h:29, from /<>/libavogadro/src/extension.h:28, from /<>/libavogadro/src/dockextension.h:28, from /<>/libavogadro/src/dockextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/dockwidget.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/dockwidget.cpp.o -c /<>/libavogadro/src/dockwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/libavogadro/src/dockwidget.h:21, from /<>/libavogadro/src/dockwidget.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementdetail_p.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o -c /<>/libavogadro/src/elementdetail_p.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /<>/libavogadro/src/elementdetail_p.h:29, from /<>/libavogadro/src/elementdetail_p.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementitem_p.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementitem_p.cpp.o -c /<>/libavogadro/src/elementitem_p.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /<>/libavogadro/src/elementitem_p.h:29, from /<>/libavogadro/src/elementitem_p.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 16%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/elementtranslator.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/elementtranslator.cpp.o -c /<>/libavogadro/src/elementtranslator.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/elementtranslator.h:28, from /<>/libavogadro/src/elementtranslator.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/engine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/engine.cpp.o -c /<>/libavogadro/src/engine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engine.h:29, from /<>/libavogadro/src/engine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/extension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/extension.cpp.o -c /<>/libavogadro/src/extension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/plugin.h:29, from /<>/libavogadro/src/extension.h:28, from /<>/libavogadro/src/extension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/fragment.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/fragment.cpp.o -c /<>/libavogadro/src/fragment.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/fragment.h:28, from /<>/libavogadro/src/fragment.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glhit.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glhit.cpp.o -c /<>/libavogadro/src/glhit.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/glhit.h:30, from /<>/libavogadro/src/glhit.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/global.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/global.cpp.o -c /<>/libavogadro/src/global.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/libavogadro/src/global.h:29, from /<>/libavogadro/src/global.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glpainter_p.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glpainter_p.cpp.o -c /<>/libavogadro/src/glpainter_p.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/glpainter_p.h:32, from /<>/libavogadro/src/glpainter_p.cpp:31: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/glwidget.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/glwidget.cpp.o -c /<>/libavogadro/src/glwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/camera.h:35, from /<>/libavogadro/src/glwidget.cpp:32: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/idlist.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/idlist.cpp.o -c /<>/libavogadro/src/idlist.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/idlist.h:28, from /<>/libavogadro/src/idlist.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/mesh.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/mesh.cpp.o -c /<>/libavogadro/src/mesh.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/mesh.h:30, from /<>/libavogadro/src/mesh.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 17%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/meshgenerator.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/meshgenerator.cpp.o -c /<>/libavogadro/src/meshgenerator.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/meshgenerator.h:30, from /<>/libavogadro/src/meshgenerator.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/molecule.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/molecule.cpp.o -c /<>/libavogadro/src/molecule.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/molecule.h:29, from /<>/libavogadro/src/molecule.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moleculefile.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moleculefile.cpp.o -c /<>/libavogadro/src/moleculefile.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/moleculefile.h:30, from /<>/libavogadro/src/moleculefile.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/navigate.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/navigate.cpp.o -c /<>/libavogadro/src/navigate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/navigate.h:28, from /<>/libavogadro/src/navigate.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/neighborlist.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/neighborlist.cpp.o -c /<>/libavogadro/src/neighborlist.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/neighborlist.h:30, from /<>/libavogadro/src/neighborlist.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/painter.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/painter.cpp.o -c /<>/libavogadro/src/painter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/painter.h:32, from /<>/libavogadro/src/painter.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o -c /<>/libavogadro/src/periodictablescene_p.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qgraphicsscene.h:45, from /usr/include/qt4/QtGui/QGraphicsScene:1, from /<>/libavogadro/src/periodictablescene_p.h:28, from /<>/libavogadro/src/periodictablescene_p.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/periodictableview.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/periodictableview.cpp.o -c /<>/libavogadro/src/periodictableview.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/periodictableview.h:28, from /<>/libavogadro/src/periodictableview.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotaxis.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotaxis.cpp.o -c /<>/libavogadro/src/plotaxis.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /<>/libavogadro/src/plotaxis.h:32, from /<>/libavogadro/src/plotaxis.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 18%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotobject.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotobject.cpp.o -c /<>/libavogadro/src/plotobject.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /<>/libavogadro/src/plotobject.h:32, from /<>/libavogadro/src/plotobject.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotpoint.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotpoint.cpp.o -c /<>/libavogadro/src/plotpoint.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/plotpoint.h:32, from /<>/libavogadro/src/plotpoint.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plotwidget.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plotwidget.cpp.o -c /<>/libavogadro/src/plotwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plotaxis.h:32, from /<>/libavogadro/src/plotwidget.h:32, from /<>/libavogadro/src/plotwidget.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/plugin.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/plugin.cpp.o -c /<>/libavogadro/src/plugin.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/plugin.h:29, from /<>/libavogadro/src/plugin.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pluginmanager.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pluginmanager.cpp.o -c /<>/libavogadro/src/pluginmanager.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/pluginmanager.h:30, from /<>/libavogadro/src/pluginmanager.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitive.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/primitive.cpp.o -c /<>/libavogadro/src/primitive.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/libavogadro/src/global.h:29, from /<>/libavogadro/src/primitive.h:31, from /<>/libavogadro/src/primitive.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/primitivelist.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/primitivelist.cpp.o -c /<>/libavogadro/src/primitivelist.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/primitivelist.h:28, from /<>/libavogadro/src/primitivelist.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/protein.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/protein.cpp.o -c /<>/libavogadro/src/protein.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/protein.h:28, from /<>/libavogadro/src/protein.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/readfilethread_p.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o -c /<>/libavogadro/src/readfilethread_p.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qthread.h:45, from /usr/include/qt4/QtCore/QThread:1, from /<>/libavogadro/src/readfilethread_p.h:26, from /<>/libavogadro/src/readfilethread_p.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/residue.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/residue.cpp.o -c /<>/libavogadro/src/residue.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /<>/libavogadro/src/residue.h:29, from /<>/libavogadro/src/residue.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 19%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/sphere_p.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/sphere_p.cpp.o -c /<>/libavogadro/src/sphere_p.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/sphere_p.h:30, from /<>/libavogadro/src/sphere_p.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textrenderer_p.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o -c /<>/libavogadro/src/textrenderer_p.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/textrenderer_p.h:31, from /<>/libavogadro/src/textrenderer_p.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o -c /<>/libavogadro/src/textmatrixeditor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/textmatrixeditor.h:30, from /<>/libavogadro/src/textmatrixeditor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/tool.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/tool.cpp.o -c /<>/libavogadro/src/tool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/tool.h:28, from /<>/libavogadro/src/tool.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/toolgroup.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/toolgroup.cpp.o -c /<>/libavogadro/src/toolgroup.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/toolgroup.h:28, from /<>/libavogadro/src/toolgroup.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/undosequence.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/undosequence.cpp.o -c /<>/libavogadro/src/undosequence.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/undosequence.h:28, from /<>/libavogadro/src/undosequence.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/zmatrix.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/zmatrix.cpp.o -c /<>/libavogadro/src/zmatrix.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/libavogadro/src/global.h:29, from /<>/libavogadro/src/zmatrix.h:28, from /<>/libavogadro/src/zmatrix.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o -c /<>/libavogadro/src/pythoninterpreter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/pythoninterpreter.h:28, from /<>/libavogadro/src/pythoninterpreter.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonscript.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonscript.cpp.o -c /<>/libavogadro/src/pythonscript.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/pythonscript.h:29, from /<>/libavogadro/src/pythonscript.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 20%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonerror.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonerror.cpp.o -c /<>/libavogadro/src/pythonerror.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/pythonerror.h:28, from /<>/libavogadro/src/pythonerror.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythontool_p.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythontool_p.cpp.o -c /<>/libavogadro/src/pythontool_p.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/pythontool_p.h:32, from /<>/libavogadro/src/pythontool_p.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonengine_p.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o -c /<>/libavogadro/src/pythonengine_p.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/pythonengine_p.h:32, from /<>/libavogadro/src/pythonengine_p.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/pythonextension_p.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o -c /<>/libavogadro/src/pythonextension_p.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/pythonextension_p.h:33, from /<>/libavogadro/src/pythonextension_p.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_animation.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_animation.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_animation.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/animation.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_animation.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_atom.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_atom.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_atom.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/atom.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_atom.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_bond.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_bond.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_bond.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/bond.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_bond.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_color.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_color.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_color.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/color.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_color.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_colorbutton.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/colorbutton.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_colorbutton.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 21%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_cube.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_cube.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_cube.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/cube.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_cube.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_dockextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/dockextension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_dockextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_dockwidget.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/dockwidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_dockwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qgraphicsitem.h:45, from /usr/include/qt4/QtGui/QGraphicsItem:1, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/elementdetail_p.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_elementdetail_p.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_elementtranslator.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/elementtranslator.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_elementtranslator.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_engine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_engine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_engine.cxx [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_extension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_extension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_extension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/engine.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_engine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_extension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_fragment.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_fragment.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_fragment.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/fragment.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_fragment.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_glwidget.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_glwidget.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/glwidget.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_glwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_mesh.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_mesh.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_mesh.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/mesh.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_mesh.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 22%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_meshgenerator.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/meshgenerator.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_meshgenerator.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_molecule.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_molecule.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_molecule.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/molecule.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_molecule.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_moleculefile.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/moleculefile.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_moleculefile.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qgraphicsscene.h:45, from /usr/include/qt4/QtGui/QGraphicsScene:1, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/periodictablescene_p.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_periodictablescene_p.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_periodictableview.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/periodictableview.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_periodictableview.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_plotwidget.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/QString:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plotaxis.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/plotwidget.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_plotwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_plugin.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_plugin.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_plugin.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_plugin.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_pluginmanager.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/pluginmanager.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_pluginmanager.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_primitive.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_primitive.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_primitive.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_primitive.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 23%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_protein.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_protein.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_protein.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/protein.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_protein.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qthread.h:45, from /usr/include/qt4/QtCore/QThread:1, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/readfilethread_p.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_readfilethread_p.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_residue.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_residue.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_residue.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/fragment.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/residue.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_residue.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/textmatrixeditor.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_textmatrixeditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_tool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_tool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_tool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/tool.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_tool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_toolgroup.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/toolgroup.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_toolgroup.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_zmatrix.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/zmatrix.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_zmatrix.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonengine_p.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_pythonengine_p.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_pythonerror.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonerror.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_pythonerror.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 24%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/pythonextension_p.h:33, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_pythonextension_p.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/moc_pythontool_p.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/../../../libavogadro/src/pythontool_p.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/moc_pythontool_p.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Building CXX object libavogadro/src/CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Davogadro_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/qrc_pythontool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-i686-linux-gnu/libavogadro/src/qrc_pythontool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 25%] Linking CXX shared library ../../lib/libavogadro.so cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -Wl,-soname,libavogadro.so.1 -o ../../lib/libavogadro.so.1.2.0 CMakeFiles/avogadro.dir/animation.cpp.o CMakeFiles/avogadro.dir/atom.cpp.o CMakeFiles/avogadro.dir/bond.cpp.o CMakeFiles/avogadro.dir/camera.cpp.o CMakeFiles/avogadro.dir/color.cpp.o CMakeFiles/avogadro.dir/colorbutton.cpp.o CMakeFiles/avogadro.dir/cube.cpp.o CMakeFiles/avogadro.dir/cylinder_p.cpp.o CMakeFiles/avogadro.dir/dockextension.cpp.o CMakeFiles/avogadro.dir/dockwidget.cpp.o CMakeFiles/avogadro.dir/elementdetail_p.cpp.o CMakeFiles/avogadro.dir/elementitem_p.cpp.o CMakeFiles/avogadro.dir/elementtranslator.cpp.o CMakeFiles/avogadro.dir/engine.cpp.o CMakeFiles/avogadro.dir/extension.cpp.o CMakeFiles/avogadro.dir/fragment.cpp.o CMakeFiles/avogadro.dir/glhit.cpp.o CMakeFiles/avogadro.dir/global.cpp.o CMakeFiles/avogadro.dir/glpainter_p.cpp.o CMakeFiles/avogadro.dir/glwidget.cpp.o CMakeFiles/avogadro.dir/idlist.cpp.o CMakeFiles/avogadro.dir/mesh.cpp.o CMakeFiles/avogadro.dir/meshgenerator.cpp.o CMakeFiles/avogadro.dir/molecule.cpp.o CMakeFiles/avogadro.dir/moleculefile.cpp.o CMakeFiles/avogadro.dir/navigate.cpp.o CMakeFiles/avogadro.dir/neighborlist.cpp.o CMakeFiles/avogadro.dir/painter.cpp.o CMakeFiles/avogadro.dir/periodictablescene_p.cpp.o CMakeFiles/avogadro.dir/periodictableview.cpp.o CMakeFiles/avogadro.dir/plotaxis.cpp.o CMakeFiles/avogadro.dir/plotobject.cpp.o CMakeFiles/avogadro.dir/plotpoint.cpp.o CMakeFiles/avogadro.dir/plotwidget.cpp.o CMakeFiles/avogadro.dir/plugin.cpp.o CMakeFiles/avogadro.dir/pluginmanager.cpp.o CMakeFiles/avogadro.dir/primitive.cpp.o CMakeFiles/avogadro.dir/primitivelist.cpp.o CMakeFiles/avogadro.dir/protein.cpp.o CMakeFiles/avogadro.dir/readfilethread_p.cpp.o CMakeFiles/avogadro.dir/residue.cpp.o CMakeFiles/avogadro.dir/sphere_p.cpp.o CMakeFiles/avogadro.dir/textrenderer_p.cpp.o CMakeFiles/avogadro.dir/textmatrixeditor.cpp.o CMakeFiles/avogadro.dir/tool.cpp.o CMakeFiles/avogadro.dir/toolgroup.cpp.o CMakeFiles/avogadro.dir/undosequence.cpp.o CMakeFiles/avogadro.dir/zmatrix.cpp.o CMakeFiles/avogadro.dir/pythoninterpreter.cpp.o CMakeFiles/avogadro.dir/pythonscript.cpp.o CMakeFiles/avogadro.dir/pythonerror.cpp.o CMakeFiles/avogadro.dir/pythontool_p.cpp.o CMakeFiles/avogadro.dir/pythonengine_p.cpp.o CMakeFiles/avogadro.dir/pythonextension_p.cpp.o CMakeFiles/avogadro.dir/moc_animation.cxx.o CMakeFiles/avogadro.dir/moc_atom.cxx.o CMakeFiles/avogadro.dir/moc_bond.cxx.o CMakeFiles/avogadro.dir/moc_color.cxx.o CMakeFiles/avogadro.dir/moc_colorbutton.cxx.o CMakeFiles/avogadro.dir/moc_cube.cxx.o CMakeFiles/avogadro.dir/moc_dockextension.cxx.o CMakeFiles/avogadro.dir/moc_dockwidget.cxx.o CMakeFiles/avogadro.dir/moc_elementdetail_p.cxx.o CMakeFiles/avogadro.dir/moc_elementtranslator.cxx.o CMakeFiles/avogadro.dir/moc_engine.cxx.o CMakeFiles/avogadro.dir/moc_extension.cxx.o CMakeFiles/avogadro.dir/moc_fragment.cxx.o CMakeFiles/avogadro.dir/moc_glwidget.cxx.o CMakeFiles/avogadro.dir/moc_mesh.cxx.o CMakeFiles/avogadro.dir/moc_meshgenerator.cxx.o CMakeFiles/avogadro.dir/moc_molecule.cxx.o CMakeFiles/avogadro.dir/moc_moleculefile.cxx.o CMakeFiles/avogadro.dir/moc_periodictablescene_p.cxx.o CMakeFiles/avogadro.dir/moc_periodictableview.cxx.o CMakeFiles/avogadro.dir/moc_plotwidget.cxx.o CMakeFiles/avogadro.dir/moc_plugin.cxx.o CMakeFiles/avogadro.dir/moc_pluginmanager.cxx.o CMakeFiles/avogadro.dir/moc_primitive.cxx.o CMakeFiles/avogadro.dir/moc_protein.cxx.o CMakeFiles/avogadro.dir/moc_readfilethread_p.cxx.o CMakeFiles/avogadro.dir/moc_residue.cxx.o CMakeFiles/avogadro.dir/moc_textmatrixeditor.cxx.o CMakeFiles/avogadro.dir/moc_tool.cxx.o CMakeFiles/avogadro.dir/moc_toolgroup.cxx.o CMakeFiles/avogadro.dir/moc_zmatrix.cxx.o CMakeFiles/avogadro.dir/moc_pythonengine_p.cxx.o CMakeFiles/avogadro.dir/moc_pythonerror.cxx.o CMakeFiles/avogadro.dir/moc_pythonextension_p.cxx.o CMakeFiles/avogadro.dir/moc_pythontool_p.cxx.o CMakeFiles/avogadro.dir/qrc_pythontool.cxx.o -lopenbabel -lQtOpenGL -lQtGui -lQtCore -lGL -lGLU -lGLEW -lpython2.7 -lboost_python engines/bsdyengine.a tools/navigatetool.a colors/elementcolor.a -lopenbabel -lQtGui -lQtCore -lGL -lGLU cd /<>/obj-i686-linux-gnu/libavogadro/src && /usr/bin/cmake -E cmake_symlink_library ../../lib/libavogadro.so.1.2.0 ../../lib/libavogadro.so.1 ../../lib/libavogadro.so make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 25%] Built target avogadro make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 25%] Generating moc_forceengine.cxx [ 25%] Generating ui_qtaimsettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx_parameters cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/engines/ui_qtaimsettingswidget.h /<>/libavogadro/src/engines/qtaimsettingswidget.ui [ 25%] Generating ui_labelsettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/engines/ui_labelsettingswidget.h /<>/libavogadro/src/engines/labelsettingswidget.ui [ 25%] Generating ui_hbondsettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/engines/ui_hbondsettingswidget.h /<>/libavogadro/src/engines/hbondsettingswidget.ui [ 25%] Generating moc_qtaimengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx_parameters [ 25%] Generating moc_labelengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx_parameters [ 25%] Generating moc_hbondengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/forceengine.dir/DependInfo.cmake --color= cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/qtaimengine.dir/DependInfo.cmake --color= cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/labelengine.dir/DependInfo.cmake --color= Scanning dependencies of target forceengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 25%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/forceengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/forceengine.cpp.o -c /<>/libavogadro/src/engines/forceengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/forceengine.h:28, from /<>/libavogadro/src/engines/forceengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target hbondengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' Scanning dependencies of target qtaimengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build [ 26%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/hbondengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/hbondengine.cpp.o -c /<>/libavogadro/src/engines/hbondengine.cpp make[3]: Entering directory '/<>/obj-i686-linux-gnu' Scanning dependencies of target labelengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o -c /<>/libavogadro/src/engines/qtaimengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/hbondengine.h:29, from /<>/libavogadro/src/engines/hbondengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Entering directory '/<>/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/qtaimengine.h:29, from /<>/libavogadro/src/engines/qtaimengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/labelengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/labelengine.cpp.o -c /<>/libavogadro/src/engines/labelengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/labelengine.h:31, from /<>/libavogadro/src/engines/labelengine.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/forceengine.dir/moc_forceengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforceengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/forceengine.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_forceengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Linking CXX shared module ../../../lib/forceengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/forceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forceengine.so CMakeFiles/forceengine.dir/forceengine.cpp.o CMakeFiles/forceengine.dir/moc_forceengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhbondengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/hbondengine.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_hbondengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 27%] Built target forceengine make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 27%] Generating ui_ringsettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/engines/ui_ringsettingswidget.h /<>/libavogadro/src/engines/ringsettingswidget.ui [ 27%] Generating moc_ringengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/ringengine.dir/DependInfo.cmake --color= Scanning dependencies of target ringengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ringengine.dir/build.make libavogadro/src/engines/CMakeFiles/ringengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/ringengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/ringengine.cpp.o -c /<>/libavogadro/src/engines/ringengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/ringengine.h:28, from /<>/libavogadro/src/engines/ringengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/qtaimengine.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_qtaimengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/labelengine.dir/moc_labelengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dlabelengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/labelengine.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_labelengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Linking CXX shared module ../../../lib/hbondengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/hbondengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hbondengine.so CMakeFiles/hbondengine.dir/hbondengine.cpp.o CMakeFiles/hbondengine.dir/moc_hbondengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 27%] Built target hbondengine make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 27%] Generating ui_axessettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/engines/ui_axessettingswidget.h /<>/libavogadro/src/engines/axessettingswidget.ui [ 27%] Generating moc_axesengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/axesengine.dir/DependInfo.cmake --color= Scanning dependencies of target axesengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/axesengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/axesengine.cpp.o -c /<>/libavogadro/src/engines/axesengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/axesengine.h:28, from /<>/libavogadro/src/engines/axesengine.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Linking CXX shared module ../../../lib/qtaimengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/qtaimengine.so CMakeFiles/qtaimengine.dir/qtaimengine.cpp.o CMakeFiles/qtaimengine.dir/moc_qtaimengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 27%] Built target qtaimengine make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 27%] Generating ui_sticksettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/engines/ui_sticksettingswidget.h /<>/libavogadro/src/engines/sticksettingswidget.ui [ 27%] Generating moc_stickengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= Scanning dependencies of target stickengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 27%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/stickengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/stickengine.cpp.o -c /<>/libavogadro/src/engines/stickengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/stickengine.h:29, from /<>/libavogadro/src/engines/stickengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 27%] Linking CXX shared module ../../../lib/labelengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/labelengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/labelengine.so CMakeFiles/labelengine.dir/labelengine.cpp.o CMakeFiles/labelengine.dir/moc_labelengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ringengine.dir/moc_ringengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dringengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ringengine.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_ringengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 28%] Built target labelengine make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 28%] Generating ui_ribbonsettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/engines/ui_ribbonsettingswidget.h /<>/libavogadro/src/engines/ribbonsettingswidget.ui [ 28%] Generating moc_ribbonengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= Scanning dependencies of target ribbonengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o -c /<>/libavogadro/src/engines/ribbonengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/ribbonengine.h:28, from /<>/libavogadro/src/engines/ribbonengine.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Linking CXX shared module ../../../lib/ringengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ringengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ringengine.so CMakeFiles/ringengine.dir/ringengine.cpp.o CMakeFiles/ringengine.dir/moc_ringengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 28%] Built target ringengine [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dribbonengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/ribbonengine.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_ribbonengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/axesengine.dir/moc_axesengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daxesengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/axesengine.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_axesengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 28%] Generating ui_wiresettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/engines/ui_wiresettingswidget.h /<>/libavogadro/src/engines/wiresettingswidget.ui [ 28%] Generating moc_wireengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= Scanning dependencies of target wireengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/stickengine.dir/moc_stickengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dstickengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx make[3]: Entering directory '/<>/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/stickengine.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_stickengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/wireengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/wireengine.cpp.o -c /<>/libavogadro/src/engines/wireengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/wireengine.h:29, from /<>/libavogadro/src/engines/wireengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Linking CXX shared module ../../../lib/ribbonengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/ribbonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/ribbonengine.so CMakeFiles/ribbonengine.dir/ribbonengine.cpp.o CMakeFiles/ribbonengine.dir/moc_ribbonengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 28%] Built target ribbonengine make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 28%] Generating ui_cartoonsettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/engines/ui_cartoonsettingswidget.h /<>/libavogadro/src/engines/cartoonsettingswidget.ui [ 28%] Generating moc_cartoonengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx_parameters [ 28%] Linking CXX shared module ../../../lib/axesengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/axesengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/axesengine.so CMakeFiles/axesengine.dir/axesengine.cpp.o CMakeFiles/axesengine.dir/moc_axesengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 28%] Built target axesengine make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' Scanning dependencies of target cartoonengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build [ 28%] Generating ui_spheresettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/engines/ui_spheresettingswidget.h /<>/libavogadro/src/engines/spheresettingswidget.ui make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 28%] Generating moc_sphereengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx_parameters [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o -c /<>/libavogadro/src/engines/cartoonengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/cartoonengine.h:29, from /<>/libavogadro/src/engines/cartoonengine.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= Scanning dependencies of target sphereengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/sphereengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/sphereengine.cpp.o -c /<>/libavogadro/src/engines/sphereengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/sphereengine.h:30, from /<>/libavogadro/src/engines/sphereengine.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 28%] Linking CXX shared module ../../../lib/stickengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/stickengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/stickengine.so CMakeFiles/stickengine.dir/stickengine.cpp.o CMakeFiles/stickengine.dir/moc_stickengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 28%] Built target stickengine [ 28%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o -c /<>/libavogadro/src/engines/cartoonmeshgenerator.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/cartoonmeshgenerator.h:41, from /<>/libavogadro/src/engines/cartoonmeshgenerator.cpp:38: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsphereengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/sphereengine.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_sphereengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartoonengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/cartoonengine.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_cartoonengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/wireengine.dir/moc_wireengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dwireengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/wireengine.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_wireengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 29%] Linking CXX shared module ../../../lib/sphereengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/sphereengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/sphereengine.so CMakeFiles/sphereengine.dir/sphereengine.cpp.o CMakeFiles/sphereengine.dir/moc_sphereengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 29%] Built target sphereengine make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 29%] Generating ui_dipolesettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/engines/ui_dipolesettingswidget.h /<>/libavogadro/src/engines/dipolesettingswidget.ui [ 29%] Generating moc_dipoleengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= Scanning dependencies of target dipoleengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 29%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o -c /<>/libavogadro/src/engines/dipoleengine.cpp [ 30%] Building CXX object libavogadro/src/engines/CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddipoleengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/dipoleengine.h:29, from /<>/libavogadro/src/engines/dipoleengine.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/dipoleengine.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_dipoleengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Linking CXX shared module ../../../lib/wireengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/wireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/wireengine.so CMakeFiles/wireengine.dir/wireengine.cpp.o CMakeFiles/wireengine.dir/moc_wireengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 31%] Built target wireengine make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 31%] Generating moc_polygonengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= Scanning dependencies of target polygonengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/polygonengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/polygonengine.cpp.o -c /<>/libavogadro/src/engines/polygonengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/polygonengine.h:28, from /<>/libavogadro/src/engines/polygonengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpolygonengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/polygonengine.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_polygonengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 31%] Generating ui_surfacesettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/engines/ui_surfacesettingswidget.h /<>/libavogadro/src/engines/surfacesettingswidget.ui [ 31%] Generating moc_surfaceengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= Scanning dependencies of target surfaceengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 31%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o [ 31%] Linking CXX shared module ../../../lib/dipoleengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/dipoleengine.dir/link.txt --verbose=1 cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o -c /<>/libavogadro/src/engines/surfaceengine.cpp /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/dipoleengine.so CMakeFiles/dipoleengine.dir/dipoleengine.cpp.o CMakeFiles/dipoleengine.dir/moc_dipoleengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/surfaceengine.h:30, from /<>/libavogadro/src/engines/surfaceengine.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 31%] Built target dipoleengine make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 31%] Generating moc_simplewireengine.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= Scanning dependencies of target simplewireengine make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 32%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o -c /<>/libavogadro/src/engines/simplewireengine.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/engines/simplewireengine.h:28, from /<>/libavogadro/src/engines/simplewireengine.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 32%] Linking CXX shared module ../../../lib/polygonengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/polygonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/polygonengine.so CMakeFiles/polygonengine.dir/polygonengine.cpp.o CMakeFiles/polygonengine.dir/moc_polygonengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 32%] Built target polygonengine make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 32%] Generating qrc_selectrotatetool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name selectrotatetool -o /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx /<>/libavogadro/src/tools/selectrotatetool.qrc [ 32%] Generating moc_selectrotatetool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= Scanning dependencies of target selectrotatetool make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 32%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o -c /<>/libavogadro/src/tools/selectrotatetool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /<>/libavogadro/src/tools/selectrotatetool.h:33, from /<>/libavogadro/src/tools/selectrotatetool.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 32%] Linking CXX shared module ../../../lib/cartoonengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartoonengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartoonengine.so CMakeFiles/cartoonengine.dir/cartoonengine.cpp.o CMakeFiles/cartoonengine.dir/cartoonmeshgenerator.cpp.o CMakeFiles/cartoonengine.dir/moc_cartoonengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 32%] Built target cartoonengine [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/selectrotatetool.h:33, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_selectrotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsimplewireengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/simplewireengine.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_simplewireengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 33%] Building CXX object libavogadro/src/engines/CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceengine_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/engines -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/../../../../libavogadro/src/engines/surfaceengine.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/engines/moc_surfaceengine.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 33%] Building CXX object libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectrotatetool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_selectrotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 33%] Linking CXX shared module ../../../lib/simplewireengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/simplewireengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/simplewireengine.so CMakeFiles/simplewireengine.dir/simplewireengine.cpp.o CMakeFiles/simplewireengine.dir/moc_simplewireengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 33%] Built target simplewireengine make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 33%] Generating qrc_manipulatetool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name manipulatetool -o /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx /<>/libavogadro/src/tools/manipulatetool.qrc [ 33%] Generating qrc_bondcentrictool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name bondcentrictool -o /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx /<>/libavogadro/src/tools/bondcentrictool.qrc [ 33%] Generating moc_manipulatetool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx_parameters [ 34%] Generating moc_bondcentrictool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx_parameters [ 34%] Generating ui_manipulatesettingswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/tools/ui_manipulatesettingswidget.h /<>/libavogadro/src/tools/manipulatesettingswidget.ui cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= [ 34%] Generating moc_skeletontree.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= Scanning dependencies of target manipulatetool make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o -c /<>/libavogadro/src/tools/manipulatetool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/tools/manipulatetool.h:27, from /<>/libavogadro/src/tools/manipulatetool.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target bondcentrictool make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 35%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o -c /<>/libavogadro/src/tools/bondcentrictool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/tools/skeletontree.h:35, from /<>/libavogadro/src/tools/bondcentrictool.h:34, from /<>/libavogadro/src/tools/bondcentrictool.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Linking CXX shared module ../../../lib/surfaceengine.so cd /<>/obj-i686-linux-gnu/libavogadro/src/engines && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceengine.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/surfaceengine.so CMakeFiles/surfaceengine.dir/surfaceengine.cpp.o CMakeFiles/surfaceengine.dir/moc_surfaceengine.cxx.o -L/<>/obj-i686-linux-gnu/libavogadro/src/engines/.. -Wl,-rpath,/<>/obj-i686-linux-gnu/libavogadro/src/engines/..:/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 36%] Built target surfaceengine [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o -c /<>/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/tools/skeletontree.h:35, from /<>/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Linking CXX shared module ../../../lib/selectrotatetool.so cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectrotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectrotatetool.so CMakeFiles/selectrotatetool.dir/selectrotatetool.cpp.o CMakeFiles/selectrotatetool.dir/moc_selectrotatetool.cxx.o CMakeFiles/selectrotatetool.dir/qrc_selectrotatetool.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 36%] Built target selectrotatetool [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/bondcentrictool.h:34, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_bondcentrictool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/skeletontree.h:35, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_skeletontree.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/eyecandy.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o -c /<>/libavogadro/src/tools/eyecandy.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:66, from /<>/libavogadro/src/tools/eyecandy.h:30, from /<>/libavogadro/src/tools/eyecandy.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dbondcentrictool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_bondcentrictool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 36%] Generating qrc_drawtool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name drawtool -o /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx /<>/libavogadro/src/tools/drawtool.qrc [ 36%] Generating moc_drawtool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= Scanning dependencies of target drawtool make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 36%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawtool.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawtool.cpp.o -c /<>/libavogadro/src/tools/drawtool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /<>/libavogadro/src/tools/drawtool.h:30, from /<>/libavogadro/src/tools/drawtool.cpp:30: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/drawcommand.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/drawcommand.cpp.o -c /<>/libavogadro/src/tools/drawcommand.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/tools/drawcommand.h:31, from /<>/libavogadro/src/tools/drawcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 37%] Linking CXX shared module ../../../lib/bondcentrictool.so cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bondcentrictool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/bondcentrictool.so CMakeFiles/bondcentrictool.dir/bondcentrictool.cpp.o CMakeFiles/bondcentrictool.dir/skeletontree.cpp.o CMakeFiles/bondcentrictool.dir/moc_bondcentrictool.cxx.o CMakeFiles/bondcentrictool.dir/moc_skeletontree.cxx.o CMakeFiles/bondcentrictool.dir/qrc_bondcentrictool.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/moc_drawtool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/drawtool.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_drawtool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 37%] Built target bondcentrictool [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddrawtool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_drawtool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o -c /<>/libavogadro/src/tools/moveatomcommand.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/tools/moveatomcommand.h:30, from /<>/libavogadro/src/tools/moveatomcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/manipulatetool.h:27, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_manipulatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 37%] Linking CXX shared module ../../../lib/drawtool.so cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/drawtool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/drawtool.so CMakeFiles/drawtool.dir/drawtool.cpp.o CMakeFiles/drawtool.dir/drawcommand.cpp.o CMakeFiles/drawtool.dir/moc_drawtool.cxx.o CMakeFiles/drawtool.dir/qrc_drawtool.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 37%] Built target drawtool [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmanipulatetool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_manipulatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 37%] Generating qrc_autoopttool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name autoopttool -o /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx /<>/libavogadro/src/tools/autoopttool.qrc make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 37%] Generating moc_autoopttool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx_parameters [ 37%] Generating qrc_autorotatetool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name autorotatetool -o /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx /<>/libavogadro/src/tools/autorotatetool.qrc [ 37%] Generating moc_autorotatetool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= Scanning dependencies of target autorotatetool make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build Scanning dependencies of target autoopttool make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o -c /<>/libavogadro/src/tools/autorotatetool.cpp make[3]: Entering directory '/<>/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/tools/autorotatetool.h:28, from /<>/libavogadro/src/tools/autorotatetool.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/autoopttool.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/autoopttool.cpp.o -c /<>/libavogadro/src/tools/autoopttool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/tools/autoopttool.h:28, from /<>/libavogadro/src/tools/autoopttool.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autorotatetool.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_autorotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 37%] Linking CXX shared module ../../../lib/manipulatetool.so cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/manipulatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/manipulatetool.so CMakeFiles/manipulatetool.dir/manipulatetool.cpp.o CMakeFiles/manipulatetool.dir/eyecandy.cpp.o CMakeFiles/manipulatetool.dir/moveatomcommand.cpp.o CMakeFiles/manipulatetool.dir/moc_manipulatetool.cxx.o CMakeFiles/manipulatetool.dir/qrc_manipulatetool.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 37%] Built target manipulatetool [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautorotatetool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autorotatetool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 37%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/autoopttool.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_autoopttool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dautoopttool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_autoopttool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 38%] Generating qrc_clickmeasuretool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name clickmeasuretool -o /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx /<>/libavogadro/src/tools/clickmeasuretool.qrc [ 38%] Generating moc_clickmeasuretool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= Scanning dependencies of target clickmeasuretool make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o -c /<>/libavogadro/src/tools/clickmeasuretool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/tools/clickmeasuretool.h:31, from /<>/libavogadro/src/tools/clickmeasuretool.cpp:28: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 38%] Linking CXX shared module ../../../lib/autorotatetool.so cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autorotatetool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autorotatetool.so CMakeFiles/autorotatetool.dir/autorotatetool.cpp.o CMakeFiles/autorotatetool.dir/moc_autorotatetool.cxx.o CMakeFiles/autorotatetool.dir/qrc_autorotatetool.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 38%] Built target autorotatetool [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/clickmeasuretool.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_clickmeasuretool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dclickmeasuretool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_clickmeasuretool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 38%] Generating qrc_aligntool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name aligntool -o /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx /<>/libavogadro/src/tools/aligntool.qrc [ 38%] Generating moc_aligntool.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= Scanning dependencies of target aligntool make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/aligntool.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/aligntool.cpp.o -c /<>/libavogadro/src/tools/aligntool.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /<>/libavogadro/src/tools/aligntool.h:28, from /<>/libavogadro/src/tools/aligntool.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/moc_aligntool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/tool.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/../../../../libavogadro/src/tools/aligntool.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/moc_aligntool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 38%] Linking CXX shared module ../../../lib/autoopttool.so cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/autoopttool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/autoopttool.so CMakeFiles/autoopttool.dir/autoopttool.cpp.o CMakeFiles/autoopttool.dir/moc_autoopttool.cxx.o CMakeFiles/autoopttool.dir/qrc_autoopttool.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 38%] Built target autoopttool [ 38%] Building CXX object libavogadro/src/tools/CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Daligntool_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/tools -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-i686-linux-gnu/libavogadro/src/tools/qrc_aligntool.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 38%] Generating moc_gl2psextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= Scanning dependencies of target gl2psextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o -c /<>/libavogadro/src/extensions/gl2psextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/gl2psextension.h:26, from /<>/libavogadro/src/extensions/gl2psextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 39%] Building C object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cc -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fPIC -o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o -c /<>/libavogadro/src/extensions/gl2ps/gl2ps.c In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from /<>/libavogadro/src/extensions/gl2ps/gl2ps.h:39, from /<>/libavogadro/src/extensions/gl2ps/gl2ps.c:36: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 39%] Linking CXX shared module ../../../lib/clickmeasuretool.so cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/clickmeasuretool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/clickmeasuretool.so CMakeFiles/clickmeasuretool.dir/clickmeasuretool.cpp.o CMakeFiles/clickmeasuretool.dir/moc_clickmeasuretool.cxx.o CMakeFiles/clickmeasuretool.dir/qrc_clickmeasuretool.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 39%] Built target clickmeasuretool make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 39%] Generating moc_networkfetchextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= Scanning dependencies of target networkfetchextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 39%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o -c /<>/libavogadro/src/extensions/networkfetchextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/networkfetchextension.h:28, from /<>/libavogadro/src/extensions/networkfetchextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 39%] Generating ui_supercelldialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h /<>/libavogadro/src/extensions/supercelldialog.ui [ 39%] Generating moc_supercellextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx_parameters [ 39%] Generating moc_supercelldialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= Scanning dependencies of target supercellextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercellextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/supercellextension.cpp.o -c /<>/libavogadro/src/extensions/supercellextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/supercellextension.h:29, from /<>/libavogadro/src/extensions/supercellextension.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgl2psextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/gl2psextension.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_gl2psextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Linking CXX shared module ../../../lib/gl2psextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/gl2psextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/gl2psextension.so CMakeFiles/gl2psextension.dir/gl2psextension.cpp.o CMakeFiles/gl2psextension.dir/gl2ps/gl2ps.c.o CMakeFiles/gl2psextension.dir/moc_gl2psextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 40%] Built target gl2psextension make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 40%] Generating ui_shaderdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_shaderdialog.h /<>/libavogadro/src/extensions/shaderdialog.ui [ 40%] Generating moc_shaderextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= Scanning dependencies of target shaderextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/shaderextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/shaderextension.cpp.o -c /<>/libavogadro/src/extensions/shaderextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/shaderextension.h:28, from /<>/libavogadro/src/extensions/shaderextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Linking CXX shared module ../../../lib/aligntool.so cd /<>/obj-i686-linux-gnu/libavogadro/src/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/aligntool.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/aligntool.so CMakeFiles/aligntool.dir/aligntool.cpp.o CMakeFiles/aligntool.dir/moc_aligntool.cxx.o CMakeFiles/aligntool.dir/qrc_aligntool.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 40%] Built target aligntool [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/supercelldialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o -c /<>/libavogadro/src/extensions/supercelldialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, from /<>/libavogadro/src/extensions/supercelldialog.h:23, from /<>/libavogadro/src/extensions/supercelldialog.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 40%] Building CXX object libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dnetworkfetchextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/networkfetchextension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_networkfetchextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 41%] Linking CXX shared module ../../../lib/networkfetchextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/networkfetchextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/networkfetchextension.so CMakeFiles/networkfetchextension.dir/networkfetchextension.cpp.o CMakeFiles/networkfetchextension.dir/moc_networkfetchextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 41%] Built target networkfetchextension [ 41%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercellextension.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercellextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 41%] Generating ui_fileimportdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h /<>/libavogadro/src/extensions/fileimportdialog.ui [ 41%] Generating moc_fileimportextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= Scanning dependencies of target fileimportextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o -c /<>/libavogadro/src/extensions/fileimportextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h:12, from /<>/libavogadro/src/extensions/fileimportextension.h:28, from /<>/libavogadro/src/extensions/fileimportextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dfileimportextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_fileimportdialog.h:12, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/fileimportextension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_fileimportextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsupercellextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_supercelldialog.h:12, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/supercelldialog.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_supercelldialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 42%] Linking CXX shared module ../../../lib/supercellextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/supercellextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/supercellextension.so CMakeFiles/supercellextension.dir/supercellextension.cpp.o CMakeFiles/supercellextension.dir/supercelldialog.cpp.o CMakeFiles/supercellextension.dir/moc_supercellextension.cxx.o CMakeFiles/supercellextension.dir/moc_supercelldialog.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 42%] Building CXX object libavogadro/src/extensions/CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dshaderextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/shaderextension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_shaderextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 42%] Built target supercellextension make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 42%] Generating moc_propextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx_parameters [ 42%] Generating __/tools/moc_skeletontree.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/__/tools && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx_parameters [ 43%] Generating moc_propmodel.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx_parameters make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 43%] Generating qrc_cartesianextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name cartesianextension -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx /<>/libavogadro/src/extensions/cartesianextension.qrc [ 43%] Generating moc_cartesianextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx_parameters [ 43%] Generating ui_cartesianeditor.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_cartesianeditor.h /<>/libavogadro/src/extensions/cartesianeditor.ui cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= Scanning dependencies of target cartesianextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o -c /<>/libavogadro/src/extensions/cartesianextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/cartesianextension.h:26, from /<>/libavogadro/src/extensions/cartesianextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target propextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o -c /<>/libavogadro/src/tools/skeletontree.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/tools/skeletontree.h:35, from /<>/libavogadro/src/tools/skeletontree.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 43%] Linking CXX shared module ../../../lib/shaderextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/shaderextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/shaderextension.so CMakeFiles/shaderextension.dir/shaderextension.cpp.o CMakeFiles/shaderextension.dir/moc_shaderextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lGLEW make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 43%] Built target shaderextension [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propmodel.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propmodel.cpp.o -c /<>/libavogadro/src/extensions/propmodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/cmath:41, from /usr/include/c++/8/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /<>/libavogadro/src/extensions/propmodel.h:26, from /<>/libavogadro/src/extensions/propmodel.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 43%] Linking CXX shared module ../../../lib/fileimportextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileimportextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/fileimportextension.so CMakeFiles/fileimportextension.dir/fileimportextension.cpp.o CMakeFiles/fileimportextension.dir/moc_fileimportextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 43%] Built target fileimportextension [ 43%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/propextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/propextension.cpp.o -c /<>/libavogadro/src/extensions/propextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/cmath:41, from /usr/include/c++/8/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /<>/libavogadro/src/extensions/propmodel.h:26, from /<>/libavogadro/src/extensions/propextension.h:25, from /<>/libavogadro/src/extensions/propextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/cartesianextension.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_cartesianextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcartesianextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_cartesianextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/__/tools/../../../../../../libavogadro/src/tools/skeletontree.h:35, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/__/tools/moc_skeletontree.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propmodel.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propmodel.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/cmath:41, from /usr/include/c++/8/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propmodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/propextension.dir/moc_propextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpropextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/propextension.dir/moc_propextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/cmath:41, from /usr/include/c++/8/math.h:36, from /usr/include/openbabel-2.0/openbabel/mol.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propmodel.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/propextension.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_propextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 44%] Linking CXX shared module ../../../lib/cartesianextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/cartesianextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/cartesianextension.so CMakeFiles/cartesianextension.dir/cartesianextension.cpp.o CMakeFiles/cartesianextension.dir/moc_cartesianextension.cxx.o CMakeFiles/cartesianextension.dir/qrc_cartesianextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 44%] Built target cartesianextension make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 44%] Generating moc_h2methylextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= Scanning dependencies of target h2methylextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o -c /<>/libavogadro/src/extensions/h2methylextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/h2methylextension.h:26, from /<>/libavogadro/src/extensions/h2methylextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 44%] Building CXX object libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dh2methylextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/h2methylextension.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_h2methylextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 44%] Generating ui_conformersearchdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_conformersearchdialog.h /<>/libavogadro/src/extensions/conformersearchdialog.ui [ 44%] Generating qrc_animationextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name animationextension -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx /<>/libavogadro/src/extensions/animationextension.qrc [ 44%] Generating moc_forcefieldextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx_parameters [ 44%] Generating moc_animationextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx_parameters [ 44%] Generating moc_animationdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx_parameters [ 45%] Generating ui_animationdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_animationdialog.h /<>/libavogadro/src/extensions/animationdialog.ui cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= [ 45%] Generating moc_forcefielddialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx_parameters [ 46%] Generating moc_constraintsdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx_parameters Scanning dependencies of target animationextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationextension.cpp.o -c /<>/libavogadro/src/extensions/animationextension.cpp [ 46%] Linking CXX shared module ../../../lib/propextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/propextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/propextension.so CMakeFiles/propextension.dir/__/tools/skeletontree.cpp.o CMakeFiles/propextension.dir/propmodel.cpp.o CMakeFiles/propextension.dir/propextension.cpp.o CMakeFiles/propextension.dir/__/tools/moc_skeletontree.cxx.o CMakeFiles/propextension.dir/moc_propmodel.cxx.o CMakeFiles/propextension.dir/moc_propextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/animationextension.h:25, from /<>/libavogadro/src/extensions/animationextension.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Generating moc_constraintsmodel.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx_parameters [ 46%] Generating moc_conformersearchdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx_parameters [ 46%] Generating ui_forcefielddialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_forcefielddialog.h /<>/libavogadro/src/extensions/forcefielddialog.ui [ 46%] Generating ui_constraintsdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_constraintsdialog.h /<>/libavogadro/src/extensions/constraintsdialog.ui cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 46%] Built target propextension make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 46%] Generating moc_invertchiralextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx_parameters Scanning dependencies of target forcefieldextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o -c /<>/libavogadro/src/extensions/forcefieldextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/forcefielddialog.h:25, from /<>/libavogadro/src/extensions/forcefieldextension.h:26, from /<>/libavogadro/src/extensions/forcefieldextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target invertchiralextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o -c /<>/libavogadro/src/extensions/invertchiralextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/invertchiralextension.h:25, from /<>/libavogadro/src/extensions/invertchiralextension.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 46%] Linking CXX shared module ../../../lib/h2methylextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/h2methylextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/h2methylextension.so CMakeFiles/h2methylextension.dir/h2methylextension.cpp.o CMakeFiles/h2methylextension.dir/moc_h2methylextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 46%] Built target h2methylextension [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o -c /<>/libavogadro/src/extensions/forcefielddialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/forcefielddialog.h:25, from /<>/libavogadro/src/extensions/forcefielddialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 46%] Generating ui_vrmldialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_vrmldialog.h /<>/libavogadro/src/extensions/vrmldialog.ui /<>/libavogadro/src/extensions/vrmldialog.ui: Warning: Buddy assignment: 'dimX' is not a valid widget. [ 46%] Generating moc_vrmlextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx_parameters [ 46%] Generating moc_vrmldialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= Scanning dependencies of target vrmlextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 46%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o -c /<>/libavogadro/src/extensions/vrmlextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/vrmldialog.h:30, from /<>/libavogadro/src/extensions/vrmlextension.h:28, from /<>/libavogadro/src/extensions/vrmlextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinvertchiralextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/invertchiralextension.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_invertchiralextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/animationdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/animationdialog.cpp.o -c /<>/libavogadro/src/extensions/animationdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/animationdialog.h:25, from /<>/libavogadro/src/extensions/animationdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Linking CXX shared module ../../../lib/invertchiralextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/invertchiralextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/invertchiralextension.so CMakeFiles/invertchiralextension.dir/invertchiralextension.cpp.o CMakeFiles/invertchiralextension.dir/moc_invertchiralextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/povpainter.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/povpainter.cpp.o -c /<>/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/extensions/povpainter.h:28, from /<>/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 47%] Built target invertchiralextension [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/trajvideomaker.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o -c /<>/libavogadro/src/extensions/trajvideomaker.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/trajvideomaker.h:25, from /<>/libavogadro/src/extensions/trajvideomaker.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 47%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o -c /<>/libavogadro/src/extensions/constraintsdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, from /usr/include/c++/8/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /<>/libavogadro/src/extensions/constraintsmodel.h:26, from /<>/libavogadro/src/extensions/constraintsdialog.h:25, from /<>/libavogadro/src/extensions/constraintsdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o -c /<>/libavogadro/src/extensions/vrmlpainter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/extensions/vrmlpainter.h:4, from /<>/libavogadro/src/extensions/vrmlpainter.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 48%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationextension.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o -c /<>/libavogadro/src/extensions/constraintsmodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, from /usr/include/c++/8/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /<>/libavogadro/src/extensions/constraintsmodel.h:26, from /<>/libavogadro/src/extensions/constraintsmodel.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/animationdialog.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_animationdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Danimationextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qrc_animationextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o -c /<>/libavogadro/src/extensions/conformersearchdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/conformersearchdialog.h:25, from /<>/libavogadro/src/extensions/conformersearchdialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o -c /<>/libavogadro/src/extensions/vrmldialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/vrmldialog.h:30, from /<>/libavogadro/src/extensions/vrmldialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 49%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmlextension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmlextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Linking CXX shared module ../../../lib/animationextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/animationextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/animationextension.so CMakeFiles/animationextension.dir/animationextension.cpp.o CMakeFiles/animationextension.dir/animationdialog.cpp.o CMakeFiles/animationextension.dir/povpainter.cpp.o CMakeFiles/animationextension.dir/trajvideomaker.cpp.o CMakeFiles/animationextension.dir/moc_animationextension.cxx.o CMakeFiles/animationextension.dir/moc_animationdialog.cxx.o CMakeFiles/animationextension.dir/qrc_animationextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 50%] Built target animationextension make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 50%] Generating ui_insertpeptidedialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_insertpeptidedialog.h /<>/libavogadro/src/extensions/insertpeptidedialog.ui [ 50%] Generating moc_insertpeptideextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertpeptideextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o -c /<>/libavogadro/src/extensions/insertpeptideextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/insertpeptideextension.h:25, from /<>/libavogadro/src/extensions/insertpeptideextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o -c /<>/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/extensions/insertcommand.h:29, from /<>/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvrmlextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/vrmldialog.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_vrmldialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefieldextension.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefieldextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Linking CXX shared module ../../../lib/vrmlextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/vrmlextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/vrmlextension.so CMakeFiles/vrmlextension.dir/vrmlextension.cpp.o CMakeFiles/vrmlextension.dir/vrmlpainter.cpp.o CMakeFiles/vrmlextension.dir/vrmldialog.cpp.o CMakeFiles/vrmlextension.dir/moc_vrmlextension.cxx.o CMakeFiles/vrmlextension.dir/moc_vrmldialog.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 50%] Built target vrmlextension [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/forcefielddialog.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_forcefielddialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, from /usr/include/c++/8/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsdialog.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 50%] Generating moc_hydrogensextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 50%] Generating ui_insertfragmentdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_insertfragmentdialog.h /<>/libavogadro/src/extensions/insertfragmentdialog.ui Scanning dependencies of target hydrogensextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 50%] Generating moc_insertfragmentextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx_parameters [ 50%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o -c /<>/libavogadro/src/extensions/hydrogensextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/hydrogensextension.h:26, from /<>/libavogadro/src/extensions/hydrogensextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Generating moc_insertfragmentdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx_parameters [ 51%] Generating moc_sortfiltertreeproxymodel.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertfragmentextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertpeptideextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx make[3]: Entering directory '/<>/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertpeptideextension.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertpeptideextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o -c /<>/libavogadro/src/extensions/insertfragmentextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/insertfragmentextension.h:25, from /<>/libavogadro/src/extensions/insertfragmentextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Linking CXX shared module ../../../lib/insertpeptideextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertpeptideextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertpeptideextension.so CMakeFiles/insertpeptideextension.dir/insertpeptideextension.cpp.o CMakeFiles/insertpeptideextension.dir/insertcommand.cpp.o CMakeFiles/insertpeptideextension.dir/moc_insertpeptideextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 51%] Built target insertpeptideextension [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o -c /<>/libavogadro/src/extensions/insertfragmentdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/extensions/insertfragmentdialog.h:28, from /<>/libavogadro/src/extensions/insertfragmentdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/bits/stl_algobase.h:59, from /usr/include/c++/8/vector:60, from /usr/include/openbabel-2.0/openbabel/forcefield.h:22, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/constraintsmodel.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_constraintsmodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dhydrogensextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/hydrogensextension.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_hydrogensextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o -c /<>/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/extensions/insertcommand.h:29, from /<>/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dforcefieldextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/conformersearchdialog.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_conformersearchdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Linking CXX shared module ../../../lib/hydrogensextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/hydrogensextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/hydrogensextension.so CMakeFiles/hydrogensextension.dir/hydrogensextension.cpp.o CMakeFiles/hydrogensextension.dir/moc_hydrogensextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 51%] Generating moc_selectextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 51%] Built target hydrogensextension Scanning dependencies of target selectextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o -c /<>/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp make[3]: Entering directory '/<>/obj-i686-linux-gnu' In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, from /<>/libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, from /<>/libavogadro/src/extensions/sortfiltertreeproxymodel.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/selectextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/selectextension.cpp.o -c /<>/libavogadro/src/extensions/selectextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/selectextension.h:26, from /<>/libavogadro/src/extensions/selectextension.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/selectextension.dir/moc_selectextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dselectextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/selectextension.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_selectextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentextension.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertfragmentdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertfragmentdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Linking CXX shared module ../../../lib/forcefieldextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/forcefieldextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/forcefieldextension.so CMakeFiles/forcefieldextension.dir/forcefieldextension.cpp.o CMakeFiles/forcefieldextension.dir/forcefielddialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsdialog.cpp.o CMakeFiles/forcefieldextension.dir/constraintsmodel.cpp.o CMakeFiles/forcefieldextension.dir/conformersearchdialog.cpp.o CMakeFiles/forcefieldextension.dir/moc_forcefieldextension.cxx.o CMakeFiles/forcefieldextension.dir/moc_forcefielddialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsdialog.cxx.o CMakeFiles/forcefieldextension.dir/moc_constraintsmodel.cxx.o CMakeFiles/forcefieldextension.dir/moc_conformersearchdialog.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 51%] Built target forcefieldextension [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertfragmentextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtGui/qabstractproxymodel.h:45, from /usr/include/qt4/QtGui/qsortfilterproxymodel.h:45, from /usr/include/qt4/QtGui/QSortFilterProxyModel:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/sortfiltertreeproxymodel.h:22, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_sortfiltertreeproxymodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 51%] Generating ui_insertdnadialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_insertdnadialog.h /<>/libavogadro/src/extensions/insertdnadialog.ui [ 51%] Generating moc_insertdnaextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= Scanning dependencies of target insertdnaextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o -c /<>/libavogadro/src/extensions/insertdnaextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/insertdnaextension.h:22, from /<>/libavogadro/src/extensions/insertdnaextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 51%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o -c /<>/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/extensions/insertcommand.h:29, from /<>/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 52%] Linking CXX shared module ../../../lib/insertfragmentextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertfragmentextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertfragmentextension.so CMakeFiles/insertfragmentextension.dir/insertfragmentextension.cpp.o CMakeFiles/insertfragmentextension.dir/insertfragmentdialog.cpp.o CMakeFiles/insertfragmentextension.dir/insertcommand.cpp.o CMakeFiles/insertfragmentextension.dir/sortfiltertreeproxymodel.cpp.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentextension.cxx.o CMakeFiles/insertfragmentextension.dir/moc_insertfragmentdialog.cxx.o CMakeFiles/insertfragmentextension.dir/moc_sortfiltertreeproxymodel.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 52%] Built target insertfragmentextension [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinsertdnaextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx [ 52%] Linking CXX shared module ../../../lib/selectextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/selectextension.dir/link.txt --verbose=1 In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/insertdnaextension.h:22, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_insertdnaextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/selectextension.so CMakeFiles/selectextension.dir/selectextension.cpp.o CMakeFiles/selectextension.dir/moc_selectextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 52%] Built target selectextension make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 52%] Generating ui_molecularpropdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_molecularpropdialog.h /<>/libavogadro/src/extensions/molecularpropdialog.ui [ 52%] Generating moc_molecularpropextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= Scanning dependencies of target molecularpropextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 52%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o -c /<>/libavogadro/src/extensions/molecularpropextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/molecularpropextension.h:25, from /<>/libavogadro/src/extensions/molecularpropextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 53%] Building CXX object libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dmolecularpropextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/molecularpropextension.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_molecularpropextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 53%] Generating ui_pythonterminalwidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_pythonterminalwidget.h /<>/libavogadro/src/extensions/pythonterminalwidget.ui [ 53%] Generating moc_pythonterminal.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx_parameters [ 54%] Generating moc_highlighter.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx_parameters make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 54%] Generating ui_povraydialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/ui_povraydialog.h /<>/libavogadro/src/extensions/povraydialog.ui [ 54%] Generating moc_povrayextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= [ 55%] Generating moc_povraydialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx_parameters Scanning dependencies of target pythonterminal make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o -c /<>/libavogadro/src/extensions/pythonterminal.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/libavogadro/src/extensions/pythonterminal.h:30, from /<>/libavogadro/src/extensions/pythonterminal.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= Scanning dependencies of target povrayextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povrayextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povrayextension.cpp.o -c /<>/libavogadro/src/extensions/povrayextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/povraydialog.h:30, from /<>/libavogadro/src/extensions/povrayextension.h:28, from /<>/libavogadro/src/extensions/povrayextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 55%] Linking CXX shared module ../../../lib/insertdnaextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/insertdnaextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/insertdnaextension.so CMakeFiles/insertdnaextension.dir/insertdnaextension.cpp.o CMakeFiles/insertdnaextension.dir/insertcommand.cpp.o CMakeFiles/insertdnaextension.dir/moc_insertdnaextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 55%] Built target insertdnaextension [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povpainter.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povpainter.cpp.o -c /<>/libavogadro/src/extensions/povpainter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/extensions/povpainter.h:28, from /<>/libavogadro/src/extensions/povpainter.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 55%] Linking CXX shared module ../../../lib/molecularpropextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/molecularpropextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/molecularpropextension.so CMakeFiles/molecularpropextension.dir/molecularpropextension.cpp.o CMakeFiles/molecularpropextension.dir/moc_molecularpropextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lQtNetwork make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 55%] Built target molecularpropextension [ 55%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/povraydialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/povraydialog.cpp.o -c /<>/libavogadro/src/extensions/povraydialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/povraydialog.h:30, from /<>/libavogadro/src/extensions/povraydialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 56%] Generating ui_symmetrydialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/ui_symmetrydialog.h /<>/libavogadro/src/extensions/symmetry/symmetrydialog.ui [ 56%] Generating moc_symmetryextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/symmetry /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= Scanning dependencies of target symmetryextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 56%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o -c /<>/libavogadro/src/extensions/symmetry/symmetryextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/symmetry/symmetryextension.h:25, from /<>/libavogadro/src/extensions/symmetry/symmetryextension.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povrayextension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povrayextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Building CXX object libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsymmetryextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry -I/<>/libavogadro/src/extensions/symmetry -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/../../../../../libavogadro/src/extensions/symmetry/symmetryextension.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/moc_symmetryextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 56%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/highlighter.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/highlighter.cpp.o -c /<>/libavogadro/src/extensions/highlighter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /<>/libavogadro/src/extensions/highlighter.h:22, from /<>/libavogadro/src/extensions/highlighter.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 56%] Generating ui_ceviewoptionswidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceviewoptionswidget.h /<>/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.ui [ 57%] Generating moc_crystallographyextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx_parameters [ 57%] Generating moc_crystalpastedialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx_parameters [ 57%] Generating ui/moc_ceabstractdockwidget.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx_parameters [ 57%] Generating ui/moc_ceabstracteditor.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx_parameters [ 57%] Generating ui/moc_cecoordinateeditor.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx_parameters [ 57%] Generating ui/moc_cematrixeditor.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx_parameters [ 57%] Generating ui/moc_ceparametereditor.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx_parameters [ 57%] Generating ui/moc_ceslabbuilder.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx_parameters [ 57%] Generating ui/moc_cetranslatewidget.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx_parameters [ 58%] Generating ui/moc_ceviewoptionswidget.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx_parameters [ 58%] Generating ui_crystalpastedialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_crystalpastedialog.h /<>/libavogadro/src/extensions/crystallography/crystalpastedialog.ui [ 58%] Generating ui_cecoordinateeditor.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_cecoordinateeditor.h /<>/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.ui [ 58%] Generating ui_cematrixeditor.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_cematrixeditor.h /<>/libavogadro/src/extensions/crystallography/ui/cematrixeditor.ui [ 58%] Generating ui_ceparametereditor.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceparametereditor.h /<>/libavogadro/src/extensions/crystallography/ui/ceparametereditor.ui [ 58%] Generating ui_ceslabbuilder.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_ceslabbuilder.h /<>/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.ui [ 58%] Generating ui_cetranslatewidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui_cetranslatewidget.h /<>/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.ui cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/crystallography /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= Scanning dependencies of target crystallographyextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 58%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/avospglib.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/avospglib.cpp.o -c /<>/libavogadro/src/extensions/crystallography/avospglib.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/new:39, from /usr/include/eigen3/Eigen/Core:66, from /<>/libavogadro/src/extensions/crystallography/avospglib.h:23, from /<>/libavogadro/src/extensions/crystallography/avospglib.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/pythonterminal.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_pythonterminal.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Building CXX object libavogadro/src/extensions/CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpovrayextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/povraydialog.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_povraydialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Linking CXX shared module ../../../../lib/symmetryextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry && /usr/bin/cmake -E cmake_link_script CMakeFiles/symmetryextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/symmetryextension.so CMakeFiles/symmetryextension.dir/symmetryextension.cpp.o CMakeFiles/symmetryextension.dir/moc_symmetryextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU libmsym/libmsym.a make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 58%] Built target symmetryextension [ 58%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ceundo.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ceundo.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /<>/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /<>/libavogadro/src/extensions/crystallography/ceundo.h:26, from /<>/libavogadro/src/extensions/crystallography/ceundo.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 58%] Linking CXX shared module ../../../lib/povrayextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/povrayextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/povrayextension.so CMakeFiles/povrayextension.dir/povrayextension.cpp.o CMakeFiles/povrayextension.dir/povpainter.cpp.o CMakeFiles/povrayextension.dir/povraydialog.cpp.o CMakeFiles/povrayextension.dir/moc_povrayextension.cxx.o CMakeFiles/povrayextension.dir/moc_povraydialog.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 58%] Built target povrayextension make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 58%] Generating ui_tab_cd.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_cd.h /<>/libavogadro/src/extensions/spectra/tab_cd.ui [ 58%] Generating moc_spectraextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx_parameters [ 58%] Generating moc_spectradialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx_parameters [ 58%] Generating moc_spectratype.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx_parameters [ 59%] Generating moc_abstract_ir.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx_parameters [ 59%] Generating moc_ir.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx_parameters [ 59%] Generating moc_nmr.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx_parameters [ 59%] Generating moc_dos.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx_parameters [ 59%] Generating moc_uv.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx_parameters [ 59%] Generating moc_cd.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx_parameters make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 59%] Generating ui_vibrationwidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_vibrationwidget.h /<>/libavogadro/src/extensions/spectra/vibrationwidget.ui [ 59%] Generating moc_vibrationextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx_parameters [ 59%] Generating moc_raman.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx_parameters [ 59%] Generating moc_vibrationwidget.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx_parameters [ 59%] Generating ui_spectradialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_spectradialog.h /<>/libavogadro/src/extensions/spectra/spectradialog.ui [ 59%] Generating ui_tab_ir_raman.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_ir_raman.h /<>/libavogadro/src/extensions/spectra/tab_ir_raman.ui [ 60%] Generating ui_tab_nmr.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_nmr.h /<>/libavogadro/src/extensions/spectra/tab_nmr.ui cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/spectra /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= [ 60%] Generating ui_tab_dos.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_dos.h /<>/libavogadro/src/extensions/spectra/tab_dos.ui [ 60%] Generating ui_tab_uv.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/ui_tab_uv.h /<>/libavogadro/src/extensions/spectra/tab_uv.ui cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/spectra /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= Scanning dependencies of target vibrationextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o -c /<>/libavogadro/src/extensions/spectra/vibrationextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /<>/libavogadro/src/extensions/spectra/vibrationextension.h:26, from /<>/libavogadro/src/extensions/spectra/vibrationextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target spectraextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 61%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectraextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectraextension.cpp.o -c /<>/libavogadro/src/extensions/spectra/spectraextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/libavogadro/src/extensions/spectra/spectraextension.h:25, from /<>/libavogadro/src/extensions/spectra/spectraextension.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o -c /<>/libavogadro/src/extensions/crystallography/crystallographyextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /<>/libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /<>/libavogadro/src/extensions/crystallography/crystallographyextension.cpp:32: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dpythonterminal_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/../../../../libavogadro/src/extensions/highlighter.h:22, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/moc_highlighter.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectradialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectradialog.cpp.o -c /<>/libavogadro/src/extensions/spectra/spectradialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/libavogadro/src/extensions/spectra/spectradialog.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Linking CXX shared module ../../../lib/pythonterminal.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions && /usr/bin/cmake -E cmake_link_script CMakeFiles/pythonterminal.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/pythonterminal.so CMakeFiles/pythonterminal.dir/pythonterminal.cpp.o CMakeFiles/pythonterminal.dir/highlighter.cpp.o CMakeFiles/pythonterminal.dir/moc_pythonterminal.cxx.o CMakeFiles/pythonterminal.dir/moc_highlighter.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lpython2.7 make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 62%] Built target pythonterminal [ 62%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o -c /<>/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /<>/libavogadro/src/extensions/crystallography/crystalpastedialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o -c /<>/libavogadro/src/extensions/spectra/vibrationwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /<>/libavogadro/src/extensions/spectra/vibrationwidget.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 62%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationextension.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 63%] Generating ui_orbitalsettingsdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalsettingsdialog.h /<>/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.ui [ 63%] Generating moc_orbitalextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx_parameters [ 63%] Generating moc_orbitalsettingsdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx_parameters [ 63%] Generating moc_orbitaltablemodel.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx_parameters [ 63%] Generating moc_orbitalwidget.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx_parameters [ 63%] Generating moc_vdwsurface.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx_parameters [ 63%] Generating qtiocompressor/moc_qtiocompressor.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx_parameters [ 63%] Generating moc_htmldelegate.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx_parameters [ 63%] Generating ui_orbitalwidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/ui_orbitalwidget.h /<>/libavogadro/src/extensions/surfaces/orbitalwidget.ui cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= Scanning dependencies of target orbitalextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o -c /<>/libavogadro/src/extensions/surfaces/orbitalextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /<>/libavogadro/src/extensions/surfaces/orbitalextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dvibrationextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/vibrationwidget.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_vibrationwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Linking CXX shared module ../../../../lib/vibrationextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/vibrationextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/vibrationextension.so CMakeFiles/vibrationextension.dir/vibrationextension.cpp.o CMakeFiles/vibrationextension.dir/vibrationwidget.cpp.o CMakeFiles/vibrationextension.dir/moc_vibrationextension.cxx.o CMakeFiles/vibrationextension.dir/moc_vibrationwidget.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 63%] Built target vibrationextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 63%] Generating ui_surfacedialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/ui_surfacedialog.h /<>/libavogadro/src/extensions/surfaces/surfacedialog.ui [ 63%] Generating moc_surfaceextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx_parameters [ 63%] Generating moc_surfacedialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/spectratype.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/spectratype.cpp.o -c /<>/libavogadro/src/extensions/spectra/spectratype.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/spectra/spectratype.h:24, from /<>/libavogadro/src/extensions/spectra/spectratype.cpp:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target surfaceextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o -c /<>/libavogadro/src/extensions/surfaces/surfaceextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /<>/libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /<>/libavogadro/src/extensions/surfaces/surfaceextension.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o -c /<>/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, from /<>/libavogadro/src/extensions/surfaces/orbitalsettingsdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o -c /<>/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /<>/libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, from /<>/libavogadro/src/extensions/surfaces/orbitaltablemodel.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/abstract_ir.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o -c /<>/libavogadro/src/extensions/spectra/abstract_ir.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /<>/libavogadro/src/extensions/spectra/abstract_ir.cpp:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o -c /<>/libavogadro/src/extensions/surfaces/surfacedialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /<>/libavogadro/src/extensions/surfaces/surfacedialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o -c /<>/libavogadro/src/extensions/surfaces/orbitalwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/libavogadro/src/extensions/surfaces/orbitalwidget.h:22, from /<>/libavogadro/src/extensions/surfaces/orbitalwidget.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/ir.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/ir.cpp.o -c /<>/libavogadro/src/extensions/spectra/ir.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/libavogadro/src/extensions/spectra/abstract_ir.h:24, from /<>/libavogadro/src/extensions/spectra/ir.h:23, from /<>/libavogadro/src/extensions/spectra/ir.cpp:21: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, from /<>/libavogadro/src/extensions/crystallography/ui/cematrixeditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o -c /<>/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /<>/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 63%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o -c /<>/libavogadro/src/extensions/surfaces/vdwsurface.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /<>/libavogadro/src/extensions/surfaces/vdwsurface.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/nmr.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/nmr.cpp.o -c /<>/libavogadro/src/extensions/spectra/nmr.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /<>/libavogadro/src/extensions/spectra/nmr.h:23, from /<>/libavogadro/src/extensions/spectra/nmr.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 64%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceparametereditor.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /<>/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /<>/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /<>/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o -c /<>/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /<>/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /<>/libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.cpp:47: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfaceextension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfaceextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /<>/libavogadro/src/extensions/crystallography/ui/ceslabbuilder.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o -c /<>/libavogadro/src/extensions/surfaces/htmldelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, from /usr/include/qt4/QtGui/QStyledItemDelegate:1, from /<>/libavogadro/src/extensions/surfaces/htmldelegate.h:22, from /<>/libavogadro/src/extensions/surfaces/htmldelegate.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/dos.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/dos.cpp.o -c /<>/libavogadro/src/extensions/spectra/dos.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /<>/libavogadro/src/extensions/spectra/dos.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/surfacedialog.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_surfacedialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalsettingsdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalsettingsdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /<>/libavogadro/src/extensions/spectra/uv.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /<>/libavogadro/src/extensions/spectra/uv.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 65%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsurfaceextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalextension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitaltablemodel.h:22, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitaltablemodel.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 66%] Linking CXX shared module ../../../../lib/surfaceextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/surfaceextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/surfaceextension.so CMakeFiles/surfaceextension.dir/surfaceextension.cpp.o CMakeFiles/surfaceextension.dir/surfacedialog.cpp.o CMakeFiles/surfaceextension.dir/vdwsurface.cpp.o CMakeFiles/surfaceextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/surfaceextension.dir/moc_surfaceextension.cxx.o CMakeFiles/surfaceextension.dir/moc_surfacedialog.cxx.o CMakeFiles/surfaceextension.dir/moc_vdwsurface.cxx.o CMakeFiles/surfaceextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 66%] Built target surfaceextension [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/orbitalwidget.h:22, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_orbitalwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/vdwsurface.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_vdwsurface.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 66%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/cd.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/cd.cpp.o -c /<>/libavogadro/src/extensions/spectra/cd.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /<>/libavogadro/src/extensions/spectra/cd.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 66%] Generating ui_swcntbuilderwidget.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/ui_swcntbuilderwidget.h /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.ui [ 66%] Generating moc_swcntbuilderextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx_parameters [ 66%] Generating moc_swcntbuilderwidget.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx_parameters [ 66%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/QIODevice:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/../../../../../../libavogadro/src/extensions/surfaces/qtiocompressor/qtiocompressor.h:50, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/qtiocompressor/moc_qtiocompressor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 66%] Generating moc_avotubegen.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/swcntbuilder /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= Scanning dependencies of target swcntbuilderextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 67%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o -c /<>/libavogadro/src/extensions/insertcommand.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/libavogadro/src/extensions/insertcommand.h:29, from /<>/libavogadro/src/extensions/insertcommand.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, from /<>/libavogadro/src/extensions/crystallography/ui/cetranslatewidget.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorbitalextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces -I/<>/libavogadro/src/extensions/surfaces -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, from /usr/include/qt4/QtGui/QStyledItemDelegate:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/../../../../../libavogadro/src/extensions/surfaces/htmldelegate.h:22, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/moc_htmldelegate.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Linking CXX shared module ../../../../lib/orbitalextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces && /usr/bin/cmake -E cmake_link_script CMakeFiles/orbitalextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orbitalextension.so CMakeFiles/orbitalextension.dir/orbitalextension.cpp.o CMakeFiles/orbitalextension.dir/orbitalsettingsdialog.cpp.o CMakeFiles/orbitalextension.dir/orbitaltablemodel.cpp.o CMakeFiles/orbitalextension.dir/orbitalwidget.cpp.o CMakeFiles/orbitalextension.dir/vdwsurface.cpp.o CMakeFiles/orbitalextension.dir/qtiocompressor/qtiocompressor.cpp.o CMakeFiles/orbitalextension.dir/htmldelegate.cpp.o CMakeFiles/orbitalextension.dir/moc_orbitalextension.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalsettingsdialog.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitaltablemodel.cxx.o CMakeFiles/orbitalextension.dir/moc_orbitalwidget.cxx.o CMakeFiles/orbitalextension.dir/moc_vdwsurface.cxx.o CMakeFiles/orbitalextension.dir/qtiocompressor/moc_qtiocompressor.cxx.o CMakeFiles/orbitalextension.dir/moc_htmldelegate.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro_OpenQube.so.0.1.0 ../../../../lib/libavogadro.so.1.2.0 -lz -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 67%] Built target orbitalextension [ 67%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, from /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 67%] Generating moc_qtaimextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/qtaim /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= Scanning dependencies of target qtaimextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 67%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o -c /<>/libavogadro/src/extensions/qtaim/qtaimextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/libavogadro/src/extensions/qtaim/qtaimextension.h:25, from /<>/libavogadro/src/extensions/qtaim/qtaimextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 67%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/raman.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/raman.cpp.o -c /<>/libavogadro/src/extensions/spectra/raman.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/string:38, from /usr/include/openbabel-2.0/openbabel/generic.h:25, from /<>/libavogadro/src/extensions/spectra/raman.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o -c /<>/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, from /<>/libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, from /<>/libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.cpp:20: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectraextension.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectraextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o -c /<>/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, from /<>/libavogadro/src/extensions/swcntbuilder/avotubegen.cpp:18: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o -c /<>/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /<>/libavogadro/src/extensions/qtaim/qtaimwavefunction.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderextension.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectradialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/swcntbuilderwidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_swcntbuilderwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o -c /<>/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/cmath:41, from /<>/libavogadro/src/extensions/qtaim/qtaimwavefunctionevaluator.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dswcntbuilderextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder -I/<>/libavogadro/src/extensions/swcntbuilder -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/../../../../../libavogadro/src/extensions/swcntbuilder/avotubegen.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/moc_avotubegen.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectratype.h:24, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_spectratype.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 68%] Linking CXX shared module ../../../../lib/swcntbuilderextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder && /usr/bin/cmake -E cmake_link_script CMakeFiles/swcntbuilderextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/swcntbuilderextension.so CMakeFiles/swcntbuilderextension.dir/__/insertcommand.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderextension.cpp.o CMakeFiles/swcntbuilderextension.dir/swcntbuilderwidget.cpp.o CMakeFiles/swcntbuilderextension.dir/avotubegen.cpp.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderextension.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_swcntbuilderwidget.cxx.o CMakeFiles/swcntbuilderextension.dir/moc_avotubegen.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU tubegen/libtubegen.a make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 68%] Built target swcntbuilderextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 68%] Generating ui_gamessefpmatchdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessefpmatchdialog.h /<>/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.ui [ 68%] Generating moc_inputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx_parameters [ 68%] Generating moc_gamessextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx_parameters [ 69%] Generating moc_gamessinputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx_parameters [ 69%] Generating moc_gamesshighlighter.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx_parameters [ 69%] Generating moc_gamessefpmatchdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx_parameters [ 69%] Generating ui_gamessinputdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessinputdialog.h /<>/libavogadro/src/extensions/quantuminput/gamessinputdialog.ui cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/quantuminput /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= [ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystallographyextension.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystallographyextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target gamessextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 69%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/inputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/inputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_abstract_ir.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessextension.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gamessextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /<>/libavogadro/src/extensions/quantuminput/gamessextension.h:26, from /<>/libavogadro/src/extensions/quantuminput/gamessextension.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/../../../../../libavogadro/src/extensions/crystallography/crystalpastedialog.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/moc_crystalpastedialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o -c /<>/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /<>/libavogadro/src/extensions/qtaim/qtaimodeintegrator.h:30, from /<>/libavogadro/src/extensions/qtaim/qtaimodeintegrator.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_ir.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_ir.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/ir.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_ir.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstractdockwidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o -c /<>/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /<>/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.h:28, from /<>/libavogadro/src/extensions/qtaim/qtaimcriticalpointlocator.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 69%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceabstracteditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_nmr.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/nmr.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_nmr.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cecoordinateeditor.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cecoordinateeditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /<>/libavogadro/src/extensions/quantuminput/gamessinputdialog.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cematrixeditor.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cematrixeditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_dos.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_dos.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/dos.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_dos.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstracteditor.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceparametereditor.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceparametereditor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o -c /<>/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/QtGlobal:1, from /<>/libavogadro/src/extensions/qtaim/qtaimmathutilities.h:29, from /<>/libavogadro/src/extensions/qtaim/qtaimmathutilities.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceslabbuilder.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceslabbuilder.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_uv.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_uv.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/uv.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_uv.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 70%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/cetranslatewidget.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_cetranslatewidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography -I/<>/libavogadro/src/extensions/crystallography -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdockwidget.h:45, from /usr/include/qt4/QtGui/QDockWidget:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockwidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceabstractdockwidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/../../../../../../libavogadro/src/extensions/crystallography/ui/ceviewoptionswidget.h:21, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/ui/moc_ceviewoptionswidget.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_cd.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_cd.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qhash.h:45, from /usr/include/qt4/QtCore/QHash:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/cd.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_cd.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 71%] Linking CXX shared module ../../../../lib/crystallographyextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography && /usr/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU -lsymspg make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 71%] Built target crystallographyextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 71%] Generating ui_lammpsinputdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_lammpsinputdialog.h /<>/libavogadro/src/extensions/quantuminput/lammpsinputdialog.ui [ 71%] Generating moc_inputfileextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx_parameters [ 72%] Generating moc_abinitinputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx_parameters [ 72%] Generating moc_daltoninputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx_parameters [ 72%] Generating moc_gamessukinputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx_parameters [ 72%] Generating moc_gaussianinputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx_parameters [ 72%] Generating moc_molproinputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx_parameters [ 72%] Generating moc_mopacinputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx_parameters [ 72%] Generating moc_nwcheminputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx_parameters [ 72%] Generating moc_psi4inputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx_parameters [ 72%] Generating moc_qcheminputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx_parameters [ 72%] Generating moc_teracheminputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx_parameters [ 73%] Generating moc_lammpsinputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx_parameters [ 73%] Generating ui_abinitinputdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_abinitinputdialog.h /<>/libavogadro/src/extensions/quantuminput/abinitinputdialog.ui [ 73%] Generating ui_gaussianinputdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gaussianinputdialog.h /<>/libavogadro/src/extensions/quantuminput/gaussianinputdialog.ui [ 73%] Generating ui_daltoninputdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_daltoninputdialog.h /<>/libavogadro/src/extensions/quantuminput/daltoninputdialog.ui [ 73%] Generating ui_gamessukinputdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_gamessukinputdialog.h /<>/libavogadro/src/extensions/quantuminput/gamessukinputdialog.ui [ 73%] Generating ui_molproinputdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_molproinputdialog.h /<>/libavogadro/src/extensions/quantuminput/molproinputdialog.ui [ 73%] Generating ui_mopacinputdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_mopacinputdialog.h /<>/libavogadro/src/extensions/quantuminput/mopacinputdialog.ui [ 73%] Generating ui_nwcheminputdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_nwcheminputdialog.h /<>/libavogadro/src/extensions/quantuminput/nwcheminputdialog.ui [ 73%] Generating ui_psi4inputdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_psi4inputdialog.h /<>/libavogadro/src/extensions/quantuminput/psi4inputdialog.ui [ 74%] Generating ui_qcheminputdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_qcheminputdialog.h /<>/libavogadro/src/extensions/quantuminput/qcheminputdialog.ui [ 74%] Generating ui_teracheminputdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/ui_teracheminputdialog.h /<>/libavogadro/src/extensions/quantuminput/teracheminputdialog.ui cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/quantuminput /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= Scanning dependencies of target inputfileextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build [ 74%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/moc_raman.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/spectradialog.h:23, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/abstract_ir.h:24, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/../../../../../libavogadro/src/extensions/spectra/raman.h:24, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/moc_raman.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 74%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/inputfileextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/quantuminput/inputfileextension.h:28, from /<>/libavogadro/src/extensions/quantuminput/inputfileextension.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 75%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o -c /<>/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /<>/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.h:30, from /<>/libavogadro/src/extensions/qtaim/qtaimlsodaintegrator.cpp:48: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 75%] Linking CXX shared module ../../../../lib/spectraextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra && /usr/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 75%] Built target spectraextension make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 75%] Generating ui_orcaspectra.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h /<>/libavogadro/src/extensions/orca/orcaspectra.ui [ 75%] Generating moc_orcaextension.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx_parameters [ 75%] Generating moc_orcainputdialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx_parameters [ 75%] Generating moc_orcaanalysedialog.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx_parameters [ 76%] Generating moc_orcaspectra.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx_parameters [ 76%] Generating ui_orcainputdialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcainputdialog.h /<>/libavogadro/src/extensions/orca/orcainputdialog.ui /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget2'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget3'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget4'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget5'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget6'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget7'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget8'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget9'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget10'. /<>/libavogadro/src/extensions/orca/orcainputdialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget11'. [ 76%] Generating ui_orcaanalysedialog.h cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcaanalysedialog.h /<>/libavogadro/src/extensions/orca/orcaanalysedialog.ui /<>/libavogadro/src/extensions/orca/orcaanalysedialog.ui: Warning: The name 'layoutWidget' (QWidget) is already in use, defaulting to 'layoutWidget1'. cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/orca /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= Scanning dependencies of target orcaextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 76%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaextension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaextension.cpp.o -c /<>/libavogadro/src/extensions/orca/orcaextension.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/extensions/orca/orcaextension.h:29, from /<>/libavogadro/src/extensions/orca/orcaextension.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/inputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/inputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o -c /<>/libavogadro/src/extensions/qtaim/qtaimcubature.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qalgorithms.h:45, from /usr/include/qt4/QtCore/qdebug.h:45, from /usr/include/qt4/QtCore/QDebug:1, from /<>/libavogadro/src/extensions/qtaim/qtaimcubature.cpp:39: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qprocess.h:45, from /usr/include/qt4/QtCore/QProcess:1, from /<>/libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/abinitinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o -c /<>/libavogadro/src/extensions/orca/orcainputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/orca/orcainputdialog.h:28, from /<>/libavogadro/src/extensions/orca/orcainputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dqtaimextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/../../../../../libavogadro/src/extensions/qtaim/qtaimextension.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/moc_qtaimextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/iostream:38, from /<>/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, from /<>/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, from /<>/libavogadro/src/extensions/quantuminput/daltoninputdialog.cpp:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 76%] Linking CXX shared module ../../../../lib/qtaimextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim && /usr/bin/cmake -E cmake_link_script CMakeFiles/qtaimextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/qtaimextension.so CMakeFiles/qtaimextension.dir/qtaimextension.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunction.cpp.o CMakeFiles/qtaimextension.dir/qtaimwavefunctionevaluator.cpp.o CMakeFiles/qtaimextension.dir/qtaimodeintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcriticalpointlocator.cpp.o CMakeFiles/qtaimextension.dir/qtaimmathutilities.cpp.o CMakeFiles/qtaimextension.dir/qtaimlsodaintegrator.cpp.o CMakeFiles/qtaimextension.dir/qtaimcubature.cpp.o CMakeFiles/qtaimextension.dir/moc_qtaimextension.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 76%] Built target qtaimextension [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /<>/libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, from /<>/libavogadro/src/extensions/quantuminput/gamesshighlighter.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /<>/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp: In member function ‘void Avogadro::GamessControlGroup::WriteToFile(std::ostream&, Avogadro::GamessInputData*, long int)’: /<>/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:850:19: warning: ‘%s’ directive writing up to 179 bytes into a region of size 174 [-Wformat-overflow=] sprintf( Out, "CITYP=%s ", textVal ); ^~~~~~~~~~~ ~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/bits/locale_classes.h:40, from /usr/include/c++/8/bits/ios_base.h:41, from /usr/include/c++/8/ios:42, from /usr/include/c++/8/ostream:38, from /usr/include/c++/8/iostream:39, from /<>/libavogadro/src/extensions/quantuminput/gamessinputdata.h:26, from /<>/libavogadro/src/extensions/quantuminput/gamessinputdata.cpp:14: /usr/include/i386-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 187 bytes into a destination of size 180 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, from /<>/libavogadro/src/extensions/quantuminput/gamessukinputdialog.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, from /<>/libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o -c /<>/libavogadro/src/extensions/orca/orcaanalysedialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/orca/orcaanalysedialog.h:28, from /<>/libavogadro/src/extensions/orca/orcaanalysedialog.cpp:29: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessextension.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qprocess.h:45, from /usr/include/qt4/QtCore/QProcess:1, from /<>/libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, from /<>/libavogadro/src/extensions/quantuminput/gaussianinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessinputdialog.h:25, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtGui/qsyntaxhighlighter.h:45, from /usr/include/qt4/QtGui/QSyntaxHighlighter:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamesshighlighter.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamesshighlighter.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 77%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dgamessextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessefpmatchdialog.h:27, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessefpmatchdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/molproinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Linking CXX shared module ../../../../lib/gamessextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/gamessextension.dir/link.txt --verbose=1 [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/gamessextension.so CMakeFiles/gamessextension.dir/inputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessextension.cpp.o CMakeFiles/gamessextension.dir/gamessinputdialog.cpp.o CMakeFiles/gamessextension.dir/gamessinputdata.cpp.o CMakeFiles/gamessextension.dir/gamesshighlighter.cpp.o CMakeFiles/gamessextension.dir/gamessefpmatchdialog.cpp.o CMakeFiles/gamessextension.dir/moc_inputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamessextension.cxx.o CMakeFiles/gamessextension.dir/moc_gamessinputdialog.cxx.o CMakeFiles/gamessextension.dir/moc_gamesshighlighter.cxx.o CMakeFiles/gamessextension.dir/moc_gamessefpmatchdialog.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, from /<>/libavogadro/src/extensions/quantuminput/mopacinputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 78%] Built target gamessextension make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 78%] Generating moc_smartscolor.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= Scanning dependencies of target smartscolor make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/smartscolor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/smartscolor.cpp.o -c /<>/libavogadro/src/colors/smartscolor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/smartscolor.h:28, from /<>/libavogadro/src/colors/smartscolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dsmartscolor_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/smartscolor.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_smartscolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, from /<>/libavogadro/src/extensions/quantuminput/nwcheminputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcaspectra.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o -c /<>/libavogadro/src/extensions/orca/orcaspectra.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, from /<>/libavogadro/src/extensions/orca/orcaspectra.h:26, from /<>/libavogadro/src/extensions/orca/orcaspectra.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Linking CXX shared module ../../../lib/smartscolor.so cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/smartscolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/smartscolor.so CMakeFiles/smartscolor.dir/smartscolor.cpp.o CMakeFiles/smartscolor.dir/moc_smartscolor.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 78%] Built target smartscolor make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 78%] Generating moc_customcolor.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= Scanning dependencies of target customcolor make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/customcolor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/customcolor.cpp.o -c /<>/libavogadro/src/colors/customcolor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/customcolor.h:28, from /<>/libavogadro/src/colors/customcolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/colors/CMakeFiles/customcolor.dir/moc_customcolor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcustomcolor_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/customcolor.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_customcolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/psi4inputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Linking CXX shared module ../../../lib/customcolor.so cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/customcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/customcolor.so CMakeFiles/customcolor.dir/customcolor.cpp.o CMakeFiles/customcolor.dir/moc_customcolor.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 78%] Built target customcolor [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/qcheminputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/orcadata.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/orcadata.cpp.o -c /<>/libavogadro/src/extensions/orca/orcadata.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/libavogadro/src/extensions/orca/orcadata.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, from /<>/libavogadro/src/extensions/quantuminput/teracheminputdialog.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o -c /<>/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, from /<>/libavogadro/src/extensions/quantuminput/lammpsinputdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputfileextension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputfileextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaextension.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaextension.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 78%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_inputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcainputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcainputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 79%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qprocess.h:45, from /usr/include/qt4/QtCore/QProcess:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/abinitinputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_abinitinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/daltoninputdialog.h:13, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_daltoninputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gamessukinputdialog.h:30, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gamessukinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 80%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaanalysedialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaanalysedialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 80%] Building CXX object libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dorcaextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/ui_orcaspectra.h:12, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/../../../../../libavogadro/src/extensions/orca/orcaspectra.h:26, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/moc_orcaspectra.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qiodevice.h:46, from /usr/include/qt4/QtCore/qprocess.h:45, from /usr/include/qt4/QtCore/QProcess:1, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/gaussianinputdialog.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_gaussianinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/molproinputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_molproinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/mopacinputdialog.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_mopacinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 80%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/nwcheminputdialog.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_nwcheminputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 80%] Generating moc_distancecolor.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= Scanning dependencies of target distancecolor make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 80%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/distancecolor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/distancecolor.cpp.o -c /<>/libavogadro/src/colors/distancecolor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/distancecolor.h:28, from /<>/libavogadro/src/colors/distancecolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 80%] Linking CXX shared module ../../../../lib/orcaextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca && /usr/bin/cmake -E cmake_link_script CMakeFiles/orcaextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/orcaextension.so CMakeFiles/orcaextension.dir/orcaextension.cpp.o CMakeFiles/orcaextension.dir/orcainputdialog.cpp.o CMakeFiles/orcaextension.dir/orcaanalysedialog.cpp.o CMakeFiles/orcaextension.dir/orcaspectra.cpp.o CMakeFiles/orcaextension.dir/orcadata.cpp.o CMakeFiles/orcaextension.dir/moc_orcaextension.cxx.o CMakeFiles/orcaextension.dir/moc_orcainputdialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaanalysedialog.cxx.o CMakeFiles/orcaextension.dir/moc_orcaspectra.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 80%] Generating ui_residuecolorsettings.h cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/libavogadro/src/colors/ui_residuecolorsettings.h /<>/libavogadro/src/colors/residuecolorsettings.ui [ 80%] Generating moc_residuecolor.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= Scanning dependencies of target residuecolor make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 80%] Built target orcaextension [ 80%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/residuecolor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/residuecolor.cpp.o -c /<>/libavogadro/src/colors/residuecolor.cpp [ 81%] Building CXX object libavogadro/src/colors/CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dresiduecolor_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/residuecolor.h:28, from /<>/libavogadro/src/colors/residuecolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/residuecolor.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_residuecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/glwidget.h:32, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/psi4inputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_psi4inputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 81%] Building CXX object libavogadro/src/colors/CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Ddistancecolor_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/distancecolor.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_distancecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/qcheminputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_qcheminputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 81%] Linking CXX shared module ../../../lib/distancecolor.so cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/distancecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/distancecolor.so CMakeFiles/distancecolor.dir/distancecolor.cpp.o CMakeFiles/distancecolor.dir/moc_distancecolor.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 81%] Built target distancecolor make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 81%] Generating moc_atomindexcolor.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= Scanning dependencies of target atomindexcolor make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 81%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o -c /<>/libavogadro/src/colors/atomindexcolor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/atomindexcolor.h:28, from /<>/libavogadro/src/colors/atomindexcolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 81%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/teracheminputdialog.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_teracheminputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 81%] Linking CXX shared module ../../../lib/residuecolor.so cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/residuecolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/residuecolor.so CMakeFiles/residuecolor.dir/residuecolor.cpp.o CMakeFiles/residuecolor.dir/moc_residuecolor.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 81%] Built target residuecolor make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 81%] Generating moc_chargecolor.cxx cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx_parameters cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= [ 82%] Building CXX object libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dinputfileextension_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions -I/<>/libavogadro/src/extensions/gl2ps -I/<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/primitive.h:31, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/molecule.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/inputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/../../../../../libavogadro/src/extensions/quantuminput/lammpsinputdialog.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/moc_lammpsinputdialog.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ Scanning dependencies of target chargecolor make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 83%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/chargecolor.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/chargecolor.cpp.o -c /<>/libavogadro/src/colors/chargecolor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/libavogadro/src/colors/chargecolor.h:28, from /<>/libavogadro/src/colors/chargecolor.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 83%] Building CXX object libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Datomindexcolor_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/atomindexcolor.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_atomindexcolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 83%] Building CXX object libavogadro/src/colors/CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dchargecolor_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/obj-i686-linux-gnu/libavogadro/src/colors -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -c /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/../../../../libavogadro/src/colors/chargecolor.h:28, from /<>/obj-i686-linux-gnu/libavogadro/src/colors/moc_chargecolor.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 83%] Linking CXX shared module ../../../../lib/inputfileextension.so cd /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput && /usr/bin/cmake -E cmake_link_script CMakeFiles/inputfileextension.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../../lib/inputfileextension.so CMakeFiles/inputfileextension.dir/inputfileextension.cpp.o CMakeFiles/inputfileextension.dir/inputdialog.cpp.o CMakeFiles/inputfileextension.dir/abinitinputdialog.cpp.o CMakeFiles/inputfileextension.dir/daltoninputdialog.cpp.o CMakeFiles/inputfileextension.dir/gamessukinputdialog.cpp.o CMakeFiles/inputfileextension.dir/gaussianinputdialog.cpp.o CMakeFiles/inputfileextension.dir/molproinputdialog.cpp.o CMakeFiles/inputfileextension.dir/mopacinputdialog.cpp.o CMakeFiles/inputfileextension.dir/nwcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/psi4inputdialog.cpp.o CMakeFiles/inputfileextension.dir/qcheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/teracheminputdialog.cpp.o CMakeFiles/inputfileextension.dir/lammpsinputdialog.cpp.o CMakeFiles/inputfileextension.dir/moc_inputfileextension.cxx.o CMakeFiles/inputfileextension.dir/moc_inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_abinitinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_daltoninputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gamessukinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_gaussianinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_molproinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_mopacinputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_nwcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_psi4inputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_qcheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_teracheminputdialog.cxx.o CMakeFiles/inputfileextension.dir/moc_lammpsinputdialog.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel [ 83%] Linking CXX shared module ../../../lib/atomindexcolor.so cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/atomindexcolor.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/atomindexcolor.so CMakeFiles/atomindexcolor.dir/atomindexcolor.cpp.o CMakeFiles/atomindexcolor.dir/moc_atomindexcolor.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 83%] Generating moleculelist.moc cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/libavogadro/src/python/moleculelist.moc_parameters make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 83%] Built target inputfileextension make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 83%] Built target atomindexcolor cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/python /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/python /<>/obj-i686-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= [ 83%] Generating avogadro_zh_TW.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/zh_TW.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_zh_TW.ts [ 83%] Generating aboutdialog.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/aboutdialog.moc_parameters cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_zh_TW.ts Scanning directory '/<>/avogadro/src'... [ 83%] Generating addenginedialog.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/addenginedialog.moc_parameters [ 83%] Generating application.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/application.moc_parameters cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_zh_TW.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_zh_TW.qm [ 83%] Generating detachedview.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/detachedview.moc_parameters [ 83%] Linking CXX shared module ../../../lib/chargecolor.so [ 83%] Generating enginecolorswidget.moc cd /<>/obj-i686-linux-gnu/libavogadro/src/colors && /usr/bin/cmake -E cmake_link_script CMakeFiles/chargecolor.dir/link.txt --verbose=1 cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/enginecolorswidget.moc_parameters /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/chargecolor.so CMakeFiles/chargecolor.dir/chargecolor.cpp.o CMakeFiles/chargecolor.dir/moc_chargecolor.cxx.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: ../../../lib/libavogadro.so.1.2.0 -lQtCore -lQtGui -lopenbabel -lGL -lGLU [ 83%] Generating engineitemdelegate.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/engineitemdelegate.moc_parameters [ 83%] Generating engineitemmodel.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/engineitemmodel.moc_parameters [ 84%] Generating enginelistview.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/enginelistview.moc_parameters [ 84%] Generating engineprimitiveswidget.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/engineprimitiveswidget.moc_parameters [ 84%] Generating engineviewwidget.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/engineviewwidget.moc_parameters [ 84%] Generating flattabwidget.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/flattabwidget.moc_parameters [ 84%] Generating glgraphicsview.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/glgraphicsview.moc_parameters make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 84%] Built target chargecolor [ 84%] Generating importdialog.moc [ 84%] Generating mainwindow.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/importdialog.moc_parameters cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/mainwindow.moc_parameters [ 84%] Generating pluginitemmodel.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/pluginitemmodel.moc_parameters [ 84%] Generating pluginlistview.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/pluginlistview.moc_parameters [ 85%] Generating pluginsettings.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/pluginsettings.moc_parameters [ 85%] Generating primitiveitemmodel.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/primitiveitemmodel.moc_parameters Scanning dependencies of target python-module make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build [ 85%] Generating primitivetreeview.moc [ 85%] Generating projecttreeeditor.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/projecttreeeditor.moc_parameters cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/primitivetreeview.moc_parameters make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 86%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/animation.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/animation.cpp.o -c /<>/libavogadro/src/python/animation.cpp [ 86%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/atom.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/atom.cpp.o -c /<>/libavogadro/src/python/atom.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /<>/libavogadro/src/python/animation.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/atom.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 86%] Generating projecttreemodel.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/projecttreemodel.moc_parameters [ 86%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/bond.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/bond.cpp.o -c /<>/libavogadro/src/python/bond.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/bond.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 86%] Generating projecttreemodeldelegate.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/projecttreemodeldelegate.moc_parameters [ 86%] Generating savedialog.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/savedialog.moc_parameters [ 86%] Generating settingsdialog.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/settingsdialog.moc_parameters [ 86%] Generating atomdelegate.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/atomdelegate.moc_parameters [ 87%] Generating bonddelegate.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/bonddelegate.moc_parameters [ 87%] Generating labeldelegate.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/labeldelegate.moc_parameters [ 87%] Generating moleculedelegate.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/moleculedelegate.moc_parameters [ 87%] Generating residuedelegate.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/residuedelegate.moc_parameters [ 87%] Generating selectiondelegate.moc cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/moc @/<>/obj-i686-linux-gnu/avogadro/src/selectiondelegate.moc_parameters [ 87%] Generating ui_addenginedialog.h cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/avogadro/src/ui_addenginedialog.h /<>/avogadro/src/addenginedialog.ui [ 87%] Generating ui_enginecolorswidget.h cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/avogadro/src/ui_enginecolorswidget.h /<>/avogadro/src/enginecolorswidget.ui [ 87%] Generating ui_engineprimitiveswidget.h cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h /<>/avogadro/src/engineprimitiveswidget.ui [ 87%] Generating ui_importdialog.h cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/avogadro/src/ui_importdialog.h /<>/avogadro/src/importdialog.ui [ 87%] Generating ui_mainwindow.h cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/avogadro/src/ui_mainwindow.h /<>/avogadro/src/mainwindow.ui [ 88%] Generating ui_pluginsettings.h cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/avogadro/src/ui_pluginsettings.h /<>/avogadro/src/pluginsettings.ui [ 88%] Generating ui_projecttreeeditor.h cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/avogadro/src/ui_projecttreeeditor.h /<>/avogadro/src/projecttreeeditor.ui [ 88%] Generating ui_settingsdialog.h cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/uic -o /<>/obj-i686-linux-gnu/avogadro/src/ui_settingsdialog.h /<>/avogadro/src/settingsdialog.ui [ 88%] Generating qrc_avogadro.cxx cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/lib/i386-linux-gnu/qt4/bin/rcc -name avogadro -o /<>/obj-i686-linux-gnu/avogadro/src/qrc_avogadro.cxx /<>/avogadro/src/avogadro.qrc [ 88%] Generating avogadro_af.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/af.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_af.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_af.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_af.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_af.qm [ 88%] Generating avogadro_ar.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ar.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ar.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ar.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ar.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ar.qm [ 88%] Generating avogadro_bg.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/bg.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_bg.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_bg.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_bg.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_bg.qm [ 88%] Generating avogadro_ca.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ca.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ca.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ca.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ca.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ca.qm [ 88%] Generating avogadro_ca@valencia.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ca@valencia.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ca@valencia.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ca@valencia.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ca@valencia.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ca@valencia.qm [ 89%] Generating avogadro_cs.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/cs.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_cs.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_cs.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_cs.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_cs.qm [ 89%] Generating avogadro_da.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/da.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_da.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_da.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_da.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_da.qm [ 89%] Generating avogadro_de.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/de.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_de.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_de.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_de.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_de.qm [ 89%] Generating avogadro_el.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/el.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_el.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_el.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_el.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_el.qm [ 89%] Generating avogadro_en_AU.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/en_AU.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_en_AU.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_en_AU.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_en_AU.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_en_AU.qm [ 89%] Generating avogadro_en_CA.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/en_CA.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_en_CA.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_en_CA.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_en_CA.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_en_CA.qm [ 89%] Generating avogadro_en_GB.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/en_GB.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_en_GB.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_en_GB.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_en_GB.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_en_GB.qm [ 89%] Generating avogadro_es.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/es.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_es.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_es.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_es.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_es.qm [ 89%] Generating avogadro_et.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/et.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_et.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_et.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_et.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_et.qm [ 89%] Generating avogadro_eu.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/eu.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_eu.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_eu.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_eu.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_eu.qm [ 90%] Generating avogadro_fi.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/fi.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_fi.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_fi.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_fi.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_fi.qm [ 90%] Generating avogadro_fr.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/fr.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_fr.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_fr.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_fr.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_fr.qm [ 90%] Generating avogadro_fr_CA.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/fr_CA.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_fr_CA.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_fr_CA.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_fr_CA.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_fr_CA.qm [ 90%] Generating avogadro_gl.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/gl.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_gl.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_gl.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_gl.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_gl.qm [ 90%] Generating avogadro_he.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/he.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_he.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_he.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_he.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_he.qm [ 90%] Generating avogadro_hi.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/hi.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_hi.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_hi.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_hi.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_hi.qm [ 90%] Generating avogadro_hr.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/hr.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_hr.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_hr.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_hr.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_hr.qm [ 90%] Generating avogadro_hu.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/hu.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_hu.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_hu.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_hu.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_hu.qm [ 90%] Generating avogadro_id.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/id.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_id.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_id.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_id.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_id.qm [ 91%] Generating avogadro_it.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/it.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_it.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_it.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_it.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_it.qm [ 91%] Generating avogadro_ja.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ja.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ja.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ja.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ja.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ja.qm [ 91%] Generating avogadro_kn.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/kn.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_kn.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_kn.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_kn.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_kn.qm [ 91%] Generating avogadro_ko.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ko.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ko.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ko.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ko.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ko.qm [ 91%] Generating avogadro_ms.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ms.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ms.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ms.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ms.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ms.qm [ 91%] Generating avogadro_nb.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/nb.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_nb.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_nb.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_nb.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_nb.qm [ 91%] Generating avogadro_nl.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/nl.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_nl.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_nl.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_nl.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_nl.qm [ 91%] Generating avogadro_oc.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/oc.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_oc.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_oc.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_oc.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_oc.qm [ 91%] Generating avogadro_pl.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/pl.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_pl.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_pl.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_pl.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_pl.qm [ 92%] Generating avogadro_pt.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/pt.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_pt.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_pt.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_pt.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_pt.qm [ 92%] Generating avogadro_pt_BR.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/pt_BR.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_pt_BR.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_pt_BR.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_pt_BR.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_pt_BR.qm [ 92%] Generating avogadro_ru.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ru.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ru.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ru.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ru.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ru.qm [ 92%] Generating avogadro_sk.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/sk.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sk.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sk.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sk.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sk.qm [ 92%] Generating avogadro_sl.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/sl.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sl.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sl.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sl.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sl.qm [ 92%] Generating avogadro_sq.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/sq.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sq.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sq.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sq.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sq.qm [ 92%] Generating avogadro_sr.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/sr.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sr.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sr.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sr.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sr.qm [ 92%] Generating avogadro_sv.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/sv.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sv.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sv.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sv.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_sv.qm [ 92%] Generating avogadro_ta.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ta.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ta.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ta.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ta.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ta.qm [ 92%] Generating avogadro_te.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/te.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_te.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_te.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_te.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_te.qm [ 93%] Generating avogadro_th.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/th.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_th.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_th.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_th.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_th.qm [ 93%] Generating avogadro_tr.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/tr.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_tr.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_tr.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_tr.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_tr.qm [ 93%] Generating avogadro_ug.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/ug.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ug.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ug.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ug.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_ug.qm [ 93%] Generating avogadro_uk.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/uk.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_uk.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_uk.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_uk.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_uk.qm [ 93%] Generating avogadro_vi.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/vi.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_vi.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_vi.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_vi.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_vi.qm [ 93%] Generating avogadro_zh_CN.qm cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lconvert -i /<>/i18n/avogadro/zh_CN.po -o /<>/obj-i686-linux-gnu/avogadro/src/avogadro_zh_CN.ts cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lupdate-qt4 /<>/avogadro/src -silent -noobsolete -ts /<>/obj-i686-linux-gnu/avogadro/src/avogadro_zh_CN.ts Scanning directory '/<>/avogadro/src'... cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/lrelease-qt4 -compress -removeidentical -silent /<>/obj-i686-linux-gnu/avogadro/src/avogadro_zh_CN.ts -qm /<>/obj-i686-linux-gnu/avogadro/src/avogadro_zh_CN.qm cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/avogadro/src /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/avogadro/src /<>/obj-i686-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= Scanning dependencies of target avogadro-app make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o -c /<>/avogadro/src/aboutdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qdialog.h:45, from /usr/include/qt4/QtGui/QDialog:1, from /<>/avogadro/src/aboutdialog.h:23, from /<>/avogadro/src/aboutdialog.cpp:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 93%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o -c /<>/avogadro/src/addenginedialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-i686-linux-gnu/avogadro/src/ui_addenginedialog.h:12, from /<>/avogadro/src/addenginedialog.h:28, from /<>/avogadro/src/addenginedialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/application.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/application.cpp.o -c /<>/avogadro/src/application.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qcoreapplication.h:45, from /usr/include/qt4/QtGui/qapplication.h:45, from /usr/include/qt4/QtGui/QApplication:1, from /<>/avogadro/src/application.h:25, from /<>/avogadro/src/application.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/detachedview.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/detachedview.cpp.o -c /<>/avogadro/src/detachedview.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/avogadro/src/detachedview.h:28, from /<>/avogadro/src/detachedview.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/camera.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/camera.cpp.o -c /<>/libavogadro/src/python/camera.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/camera.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/color.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/color.cpp.o -c /<>/libavogadro/src/python/color.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/color.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/cube.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/cube.cpp.o -c /<>/libavogadro/src/python/cube.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/cube.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/editcommands.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/editcommands.cpp.o -c /<>/avogadro/src/editcommands.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qundostack.h:45, from /usr/include/qt4/QtGui/QUndoCommand:1, from /<>/avogadro/src/editcommands.h:28, from /<>/avogadro/src/editcommands.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o -c /<>/avogadro/src/enginecolorswidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-i686-linux-gnu/avogadro/src/ui_enginecolorswidget.h:12, from /<>/avogadro/src/enginecolorswidget.h:28, from /<>/avogadro/src/enginecolorswidget.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o -c /<>/avogadro/src/engineitemdelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtGui/qabstractitemdelegate.h:45, from /usr/include/qt4/QtGui/qstyleditemdelegate.h:45, from /usr/include/qt4/QtGui/QStyledItemDelegate:1, from /<>/avogadro/src/engineitemdelegate.h:28, from /<>/avogadro/src/engineitemdelegate.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o -c /<>/avogadro/src/engineitemmodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtCore/QModelIndex:1, from /<>/avogadro/src/engineitemmodel.h:29, from /<>/avogadro/src/engineitemmodel.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/eigen.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/eigen.cpp.o -c /<>/libavogadro/src/python/eigen.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /<>/libavogadro/src/python/eigen.cpp:4: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/python2.7/numpy/ndarraytypes.h:1816, from /usr/include/python2.7/numpy/ndarrayobject.h:18, from /usr/include/python2.7/numpy/arrayobject.h:4, from /<>/libavogadro/src/python/eigen.cpp:5: /usr/include/python2.7/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it by " \ ^~~~~~~ [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/elementtranslator.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/elementtranslator.cpp.o -c /<>/libavogadro/src/python/elementtranslator.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/elementtranslator.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/engine.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/engine.cpp.o -c /<>/libavogadro/src/python/engine.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/engine.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/enginelistview.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o -c /<>/avogadro/src/enginelistview.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qframe.h:45, from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, from /usr/include/qt4/QtGui/qabstractitemview.h:45, from /usr/include/qt4/QtGui/qlistview.h:45, from /usr/include/qt4/QtGui/QListView:1, from /<>/avogadro/src/enginelistview.h:25, from /<>/avogadro/src/enginelistview.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 94%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o -c /<>/avogadro/src/engineprimitiveswidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-i686-linux-gnu/avogadro/src/ui_engineprimitiveswidget.h:12, from /<>/avogadro/src/engineprimitiveswidget.h:27, from /<>/avogadro/src/engineprimitiveswidget.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/extension.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/extension.cpp.o -c /<>/libavogadro/src/python/extension.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/extension.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o -c /<>/avogadro/src/engineviewwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/QWidget:1, from /<>/avogadro/src/engineviewwidget.h:28, from /<>/avogadro/src/engineviewwidget.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 95%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/fragment.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/fragment.cpp.o -c /<>/libavogadro/src/python/fragment.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/fragment.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o -c /<>/avogadro/src/flattabwidget.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/QObject:1, from /<>/avogadro/src/flattabwidget.h:26, from /<>/avogadro/src/flattabwidget.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/glwidget.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/glwidget.cpp.o -c /<>/libavogadro/src/python/glwidget.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/glwidget.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o -c /<>/avogadro/src/glgraphicsview.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qmetatype.h:45, from /usr/include/qt4/QtGui/qgraphicsview.h:45, from /usr/include/qt4/QtGui/QGraphicsView:1, from /<>/avogadro/src/glgraphicsview.h:28, from /<>/avogadro/src/glgraphicsview.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/importdialog.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/importdialog.cpp.o -c /<>/avogadro/src/importdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-i686-linux-gnu/avogadro/src/ui_importdialog.h:12, from /<>/avogadro/src/importdialog.h:28, from /<>/avogadro/src/importdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/main.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/main.cpp.o -c /<>/libavogadro/src/python/main.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/python2.7/Python.h:19, from /<>/libavogadro/src/python/main.cpp:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/mesh.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/mesh.cpp.o -c /<>/libavogadro/src/python/mesh.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/mesh.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /<>/libavogadro/src/python/glwidget.cpp: In function ‘void export_GLWidget()’: /<>/libavogadro/src/python/glwidget.cpp:53:55: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] class_ >("GLWidget") ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/detail/prologue.hpp:17, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/glwidget.cpp:2: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/main.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/main.cpp.o -c /<>/avogadro/src/main.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/main.cpp:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/meshgenerator.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/meshgenerator.cpp.o -c /<>/libavogadro/src/python/meshgenerator.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/meshgenerator.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/mainwindow.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o -c /<>/avogadro/src/mainwindow.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/plugin.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/extension.h:28, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/dockextension.h:28, from /<>/avogadro/src/mainwindow.cpp:24: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o -c /<>/avogadro/src/pluginitemmodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, from /<>/avogadro/src/pluginitemmodel.h:29, from /<>/avogadro/src/pluginitemmodel.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o -c /<>/avogadro/src/pluginlistview.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, from /<>/avogadro/src/pluginlistview.h:27, from /<>/avogadro/src/pluginlistview.cpp:23: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o -c /<>/avogadro/src/pluginsettings.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/pluginmanager.h:30, from /<>/avogadro/src/pluginlistview.h:27, from /<>/avogadro/src/pluginsettings.h:25, from /<>/avogadro/src/pluginsettings.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/molecule.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/molecule.cpp.o -c /<>/libavogadro/src/python/molecule.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/molecule.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o -c /<>/avogadro/src/primitiveitemmodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/qabstractitemmodel.h:45, from /usr/include/qt4/QtCore/QAbstractItemModel:1, from /<>/avogadro/src/primitiveitemmodel.h:28, from /<>/avogadro/src/primitiveitemmodel.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculefile.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculefile.cpp.o -c /<>/libavogadro/src/python/moleculefile.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/moleculefile.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 96%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o -c /<>/avogadro/src/primitivetreeview.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtGui/qwindowdefs.h:45, from /usr/include/qt4/QtGui/qwidget.h:46, from /usr/include/qt4/QtGui/qframe.h:45, from /usr/include/qt4/QtGui/qabstractscrollarea.h:45, from /usr/include/qt4/QtGui/qabstractitemview.h:45, from /usr/include/qt4/QtGui/qtreeview.h:45, from /usr/include/qt4/QtGui/QTreeView:1, from /<>/avogadro/src/primitivetreeview.h:25, from /<>/avogadro/src/primitivetreeview.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /<>/libavogadro/src/python/molecule.cpp: In function ‘void export_Molecule()’: /<>/libavogadro/src/python/molecule.cpp:88:12: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] std::auto_ptr >("Molecule", no_init) ^~~~~~~~ In file included from /usr/include/c++/8/memory:80, from /usr/include/boost/function/function_base.hpp:16, from /usr/include/boost/function/detail/prologue.hpp:17, from /usr/include/boost/function/function_template.hpp:13, from /usr/include/boost/function/detail/maybe_include.hpp:15, from /usr/include/boost/function/function0.hpp:11, from /usr/include/boost/python/errors.hpp:13, from /usr/include/boost/python/handle.hpp:11, from /usr/include/boost/python/args_fwd.hpp:10, from /usr/include/boost/python/args.hpp:10, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/molecule.cpp:2: /usr/include/c++/8/bits/unique_ptr.h:53:28: note: declared here template class auto_ptr; ^~~~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o -c /<>/avogadro/src/projecttreeeditor.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projecttreeeditor.h:47, from /<>/avogadro/src/projecttreeeditor.cpp:26: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o -c /<>/avogadro/src/projecttreeitem.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projecttreeitem.h:28, from /<>/avogadro/src/projecttreeitem.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/moleculelist.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/moleculelist.cpp.o -c /<>/libavogadro/src/python/moleculelist.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/python2.7/Python.h:19, from /<>/libavogadro/src/python/moleculelist.cpp:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 97%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o -c /<>/avogadro/src/projecttreemodel.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projecttreemodel.h:28, from /<>/avogadro/src/projecttreemodel.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/navigate.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/navigate.cpp.o -c /<>/libavogadro/src/python/navigate.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/navigate.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/neighborlist.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/neighborlist.cpp.o -c /<>/libavogadro/src/python/neighborlist.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/neighborlist.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o -c /<>/avogadro/src/projecttreemodeldelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projecttreemodeldelegate.h:25, from /<>/avogadro/src/projecttreemodeldelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painter.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/painter.cpp.o -c /<>/libavogadro/src/python/painter.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/painter.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/savedialog.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/savedialog.cpp.o -c /<>/avogadro/src/savedialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qchar.h:45, from /usr/include/qt4/QtCore/qstring.h:45, from /usr/include/qt4/QtCore/qdir.h:45, from /usr/include/qt4/QtGui/qfiledialog.h:45, from /usr/include/qt4/QtGui/QFileDialog:1, from /<>/avogadro/src/savedialog.h:25, from /<>/avogadro/src/savedialog.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o -c /<>/avogadro/src/settingsdialog.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qatomic.h:45, from /usr/include/qt4/QtCore/qvariant.h:45, from /usr/include/qt4/QtCore/QVariant:1, from /<>/obj-i686-linux-gnu/avogadro/src/ui_settingsdialog.h:12, from /<>/avogadro/src/settingsdialog.h:28, from /<>/avogadro/src/settingsdialog.cpp:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/painterdevice.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/painterdevice.cpp.o -c /<>/libavogadro/src/python/painterdevice.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/painterdevice.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o -c /<>/avogadro/src/projectdelegates/atomdelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projectdelegates/atomdelegate.h:25, from /<>/avogadro/src/projectdelegates/atomdelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o -c /<>/avogadro/src/projectdelegates/bonddelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projectdelegates/bonddelegate.h:25, from /<>/avogadro/src/projectdelegates/bonddelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/periodictableview.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/periodictableview.cpp.o -c /<>/libavogadro/src/python/periodictableview.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/periodictableview.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 98%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o -c /<>/avogadro/src/projectdelegates/labeldelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projectdelegates/labeldelegate.h:25, from /<>/avogadro/src/projectdelegates/labeldelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o -c /<>/avogadro/src/projectdelegates/moleculedelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projectdelegates/moleculedelegate.h:25, from /<>/avogadro/src/projectdelegates/moleculedelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o -c /<>/avogadro/src/projectdelegates/residuedelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projectdelegates/residuedelegate.h:25, from /<>/avogadro/src/projectdelegates/residuedelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o -c /<>/avogadro/src/projectdelegates/selectiondelegate.cpp In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /usr/include/qt4/QtCore/qnamespace.h:45, from /usr/include/qt4/QtCore/qobjectdefs.h:45, from /usr/include/qt4/QtCore/qobject.h:47, from /usr/include/qt4/QtCore/qtranslator.h:45, from /usr/include/qt4/QtCore/QTranslator:1, from /<>/obj-i686-linux-gnu/libavogadro/include/avogadro/global.h:29, from /<>/avogadro/src/projectdelegates/selectiondelegate.h:25, from /<>/avogadro/src/projectdelegates/selectiondelegate.cpp:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object avogadro/src/CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -I/<>/obj-i686-linux-gnu/libavogadro/include -I/<>/avogadro/src -I/usr/include/openbabel-2.0 -I/<>/obj-i686-linux-gnu/avogadro/src -I/usr/include/eigen3 -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtNetwork -isystem /usr/include/qt4/QtCore -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -c /<>/obj-i686-linux-gnu/avogadro/src/qrc_avogadro.cxx In file included from /usr/include/i386-linux-gnu/c++/8/bits/os_defines.h:39, from /usr/include/i386-linux-gnu/c++/8/bits/c++config.h:508, from /usr/include/c++/8/utility:68, from /usr/include/c++/8/algorithm:60, from /usr/include/qt4/QtCore/qglobal.h:68, from /<>/obj-i686-linux-gnu/avogadro/src/qrc_avogadro.cxx:9: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/plugin.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/plugin.cpp.o -c /<>/libavogadro/src/python/plugin.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/plugin.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/pluginmanager.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/pluginmanager.cpp.o -c /<>/libavogadro/src/python/pluginmanager.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/pluginmanager.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitive.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/primitive.cpp.o -c /<>/libavogadro/src/python/primitive.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/primitive.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Linking CXX executable ../../bin/avogadro cd /<>/obj-i686-linux-gnu/avogadro/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/avogadro-app.dir/link.txt --verbose=1 /usr/bin/c++ -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -rdynamic CMakeFiles/avogadro-app.dir/aboutdialog.cpp.o CMakeFiles/avogadro-app.dir/addenginedialog.cpp.o CMakeFiles/avogadro-app.dir/application.cpp.o CMakeFiles/avogadro-app.dir/detachedview.cpp.o CMakeFiles/avogadro-app.dir/editcommands.cpp.o CMakeFiles/avogadro-app.dir/enginecolorswidget.cpp.o CMakeFiles/avogadro-app.dir/engineitemdelegate.cpp.o CMakeFiles/avogadro-app.dir/engineitemmodel.cpp.o CMakeFiles/avogadro-app.dir/enginelistview.cpp.o CMakeFiles/avogadro-app.dir/engineprimitiveswidget.cpp.o CMakeFiles/avogadro-app.dir/engineviewwidget.cpp.o CMakeFiles/avogadro-app.dir/flattabwidget.cpp.o CMakeFiles/avogadro-app.dir/glgraphicsview.cpp.o CMakeFiles/avogadro-app.dir/importdialog.cpp.o CMakeFiles/avogadro-app.dir/main.cpp.o CMakeFiles/avogadro-app.dir/mainwindow.cpp.o CMakeFiles/avogadro-app.dir/pluginitemmodel.cpp.o CMakeFiles/avogadro-app.dir/pluginlistview.cpp.o CMakeFiles/avogadro-app.dir/pluginsettings.cpp.o CMakeFiles/avogadro-app.dir/primitiveitemmodel.cpp.o CMakeFiles/avogadro-app.dir/primitivetreeview.cpp.o CMakeFiles/avogadro-app.dir/projecttreeeditor.cpp.o CMakeFiles/avogadro-app.dir/projecttreeitem.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodel.cpp.o CMakeFiles/avogadro-app.dir/projecttreemodeldelegate.cpp.o CMakeFiles/avogadro-app.dir/savedialog.cpp.o CMakeFiles/avogadro-app.dir/settingsdialog.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/atomdelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/bonddelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/labeldelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/moleculedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/residuedelegate.cpp.o CMakeFiles/avogadro-app.dir/projectdelegates/selectiondelegate.cpp.o CMakeFiles/avogadro-app.dir/qrc_avogadro.cxx.o -o ../../bin/avogadro -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: -lQtOpenGL -lQtGui -lQtNetwork -lQtCore -lopenbabel ../../lib/libavogadro.so.1.2.0 -lX11 -lboost_python -lX11 -lboost_python make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 99%] Built target avogadro-app [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/primitivelist.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/primitivelist.cpp.o -c /<>/libavogadro/src/python/primitivelist.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/primitivelist.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [ 99%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qlist.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/qlist.cpp.o -c /<>/libavogadro/src/python/qlist.cpp [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/qstring.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/qstring.cpp.o -c /<>/libavogadro/src/python/qstring.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/qlist.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/python2.7/Python.h:19, from /<>/libavogadro/src/python/qstring.cpp:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/residue.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/residue.cpp.o -c /<>/libavogadro/src/python/residue.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/residue.cpp:2: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/sip.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/sip.cpp.o -c /<>/libavogadro/src/python/sip.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/sip.cpp:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/std_vector.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/std_vector.cpp.o -c /<>/libavogadro/src/python/std_vector.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/std_vector.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/swig.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/swig.cpp.o -c /<>/libavogadro/src/python/swig.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/swig.cpp:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/tool.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/tool.cpp.o -c /<>/libavogadro/src/python/tool.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/boost/python/detail/wrap_python.hpp:61, from /usr/include/boost/python/detail/prefix.hpp:13, from /usr/include/boost/python/args.hpp:8, from /usr/include/boost/python.hpp:11, from /<>/libavogadro/src/python/tool.cpp:3: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Building CXX object libavogadro/src/python/CMakeFiles/python-module.dir/toolgroup.cpp.o cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/c++ -DENABLE_GLSL -DENABLE_PYTHON -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -D_BSD_SOURCE -Dpython_module_EXPORTS -I/<>/obj-i686-linux-gnu/libavogadro/include -isystem /usr/include/qt4 -isystem /usr/include/qt4/QtOpenGL -isystem /usr/include/qt4/QtGui -isystem /usr/include/qt4/QtCore -I/<>/obj-i686-linux-gnu/libavogadro/src -I/usr/include/openbabel-2.0 -I/usr/include/eigen3 -I/usr/include/python2.7 -I/<>/libavogadro/include -I/<>/obj-i686-linux-gnu/libavogadro/src/python -I/usr/lib/python2.7/dist-packages/numpy/core/include -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -fPIC -o CMakeFiles/python-module.dir/toolgroup.cpp.o -c /<>/libavogadro/src/python/toolgroup.cpp In file included from /usr/include/i386-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/i686-linux-gnu/8/include-fixed/limits.h:34, from /usr/include/python2.7/Python.h:19, from /<>/libavogadro/src/python/toolgroup.cpp:1: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ [100%] Linking CXX shared module ../../../lib/Avogadro.so cd /<>/obj-i686-linux-gnu/libavogadro/src/python && /usr/bin/cmake -E cmake_link_script CMakeFiles/python-module.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fpermissive -Wl,--enable-new-dtags -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -fPIC -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,-z,defs -Wl,--as-needed -shared -o ../../../lib/Avogadro.so CMakeFiles/python-module.dir/animation.cpp.o CMakeFiles/python-module.dir/atom.cpp.o CMakeFiles/python-module.dir/bond.cpp.o CMakeFiles/python-module.dir/camera.cpp.o CMakeFiles/python-module.dir/color.cpp.o CMakeFiles/python-module.dir/cube.cpp.o CMakeFiles/python-module.dir/eigen.cpp.o CMakeFiles/python-module.dir/elementtranslator.cpp.o CMakeFiles/python-module.dir/engine.cpp.o CMakeFiles/python-module.dir/extension.cpp.o CMakeFiles/python-module.dir/fragment.cpp.o CMakeFiles/python-module.dir/glwidget.cpp.o CMakeFiles/python-module.dir/main.cpp.o CMakeFiles/python-module.dir/mesh.cpp.o CMakeFiles/python-module.dir/meshgenerator.cpp.o CMakeFiles/python-module.dir/molecule.cpp.o CMakeFiles/python-module.dir/moleculefile.cpp.o CMakeFiles/python-module.dir/moleculelist.cpp.o CMakeFiles/python-module.dir/navigate.cpp.o CMakeFiles/python-module.dir/neighborlist.cpp.o CMakeFiles/python-module.dir/painter.cpp.o CMakeFiles/python-module.dir/painterdevice.cpp.o CMakeFiles/python-module.dir/periodictableview.cpp.o CMakeFiles/python-module.dir/plugin.cpp.o CMakeFiles/python-module.dir/pluginmanager.cpp.o CMakeFiles/python-module.dir/primitive.cpp.o CMakeFiles/python-module.dir/primitivelist.cpp.o CMakeFiles/python-module.dir/qlist.cpp.o CMakeFiles/python-module.dir/qstring.cpp.o CMakeFiles/python-module.dir/residue.cpp.o CMakeFiles/python-module.dir/sip.cpp.o CMakeFiles/python-module.dir/std_vector.cpp.o CMakeFiles/python-module.dir/swig.cpp.o CMakeFiles/python-module.dir/tool.cpp.o CMakeFiles/python-module.dir/toolgroup.cpp.o -Wl,-rpath,/<>/obj-i686-linux-gnu/lib: -lstdc++ ../../../lib/libavogadro.so.1.2.0 -lQtOpenGL -lQtGui -lQtCore -lpython2.7 -lboost_python make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [100%] Built target python-module make[2]: Leaving directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-i686-linux-gnu' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python2 dh_testroot -a dh_prep -a dh_installdirs -a dh_auto_install -a cd obj-i686-linux-gnu && make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -H/<> -B/<>/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-i686-linux-gnu/CMakeFiles /<>/obj-i686-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/depend make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/depend make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/depend make -f libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/build.make libavogadro/src/extensions/symmetry/libmsym/CMakeFiles/msym.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/elementcolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/bsdyengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix 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'/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/elementcolor.dir/build.make libavogadro/src/colors/CMakeFiles/elementcolor.dir/build [ 1%] Built target msym make -f libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/build.make libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/depend make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build.make libavogadro/src/engines/CMakeFiles/bsdyengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces/openqube /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/openqube/CMakeFiles/OpenQube.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/navigatetool.dir/build.make libavogadro/src/tools/CMakeFiles/navigatetool.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/elementcolor.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 1%] Built target elementcolor make -f libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/build.make libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/swcntbuilder/tubegen /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/tubegen/CMakeFiles/tubegen.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' 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/<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/hbondengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/forceengine.dir/build.make libavogadro/src/engines/CMakeFiles/forceengine.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build.make libavogadro/src/engines/CMakeFiles/qtaimengine.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/hbondengine.dir/build.make libavogadro/src/engines/CMakeFiles/hbondengine.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/labelengine.dir/build.make libavogadro/src/engines/CMakeFiles/labelengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 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libavogadro/src/engines/CMakeFiles/stickengine.dir/depend make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/ribbonengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/stickengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/axesengine.dir/build.make libavogadro/src/engines/CMakeFiles/axesengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ringengine.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 28%] Built target ringengine make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/wireengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/stickengine.dir/build.make libavogadro/src/engines/CMakeFiles/stickengine.dir/build make -f libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build.make libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/axesengine.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 28%] Built target axesengine make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/cartoonengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/wireengine.dir/build.make libavogadro/src/engines/CMakeFiles/wireengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/ribbonengine.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/stickengine.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 28%] Built target stickengine make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/depend make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build.make libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build [ 28%] Built target ribbonengine make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/sphereengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/dipoleengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/wireengine.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 29%] Built target wireengine make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/polygonengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/cartoonengine.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/sphereengine.dir/build.make libavogadro/src/engines/CMakeFiles/sphereengine.dir/build [ 29%] Built target cartoonengine make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/surfaceengine.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build.make libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/polygonengine.dir/build.make libavogadro/src/engines/CMakeFiles/polygonengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/sphereengine.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 30%] Built target sphereengine make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/depend make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build.make libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/engines /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/engines /<>/obj-i686-linux-gnu/libavogadro/src/engines/CMakeFiles/simplewireengine.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/dipoleengine.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/polygonengine.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 31%] Built target dipoleengine make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/depend [ 31%] Built target polygonengine make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build.make libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/manipulatetool.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/surfaceengine.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 32%] Built target surfaceengine make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/engines/CMakeFiles/simplewireengine.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build.make libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build [ 33%] Built target simplewireengine make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/drawtool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build.make libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/manipulatetool.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/selectrotatetool.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/drawtool.dir/build.make libavogadro/src/tools/CMakeFiles/drawtool.dir/build [ 35%] Built target manipulatetool [ 35%] Built target selectrotatetool make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/depend make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/autorotatetool.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/autoopttool.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/bondcentrictool.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 36%] Built target bondcentrictool make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/depend make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build.make libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/drawtool.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 37%] Built target drawtool make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/depend make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/autoopttool.dir/build.make libavogadro/src/tools/CMakeFiles/autoopttool.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/tools /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/tools /<>/obj-i686-linux-gnu/libavogadro/src/tools/CMakeFiles/aligntool.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build.make libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autorotatetool.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 37%] Built target autorotatetool make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/tools/CMakeFiles/aligntool.dir/build.make libavogadro/src/tools/CMakeFiles/aligntool.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/autoopttool.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 38%] Built target autoopttool make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/clickmeasuretool.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build.make libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build [ 38%] Built target clickmeasuretool make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/tools/CMakeFiles/aligntool.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/supercellextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build.make libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build [ 38%] Built target aligntool make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/gl2psextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/shaderextension.dir/DependInfo.cmake --color= [ 39%] Built target gl2psextension make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build.make libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/networkfetchextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build.make libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build [ 40%] Built target networkfetchextension make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/depend make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build.make libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/propextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/supercellextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 41%] Built target supercellextension make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/shaderextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/DependInfo.cmake --color= [ 41%] Built target shaderextension make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/fileimportextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 42%] Built target fileimportextension make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/depend make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/propextension.dir/build.make libavogadro/src/extensions/CMakeFiles/propextension.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build.make libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build.make libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/animationextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/h2methylextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/propextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/cartesianextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 42%] Built target h2methylextension make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/depend [ 43%] Built target propextension make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/depend make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/animationextension.dir/build.make libavogadro/src/extensions/CMakeFiles/animationextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/DependInfo.cmake --color= [ 44%] Built target cartesianextension make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/animationextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 46%] Built target animationextension make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/depend make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build.make libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build.make libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build.make libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/invertchiralextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 47%] Built target invertchiralextension make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/vrmlextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/forcefieldextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build [ 49%] Built target forcefieldextension make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/depend make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build.make libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build [ 50%] Built target vrmlextension make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/selectextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/hydrogensextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertpeptideextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 50%] Built target hydrogensextension make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/selectextension.dir/build.make libavogadro/src/extensions/CMakeFiles/selectextension.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 50%] Built target insertpeptideextension make -f libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/selectextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build.make libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build [ 50%] Built target selectextension make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertfragmentextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build.make libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build [ 52%] Built target insertfragmentextension make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions /<>/obj-i686-linux-gnu/libavogadro/src/extensions/CMakeFiles/povrayextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/insertdnaextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 52%] Built target insertdnaextension make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/symmetry /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry /<>/obj-i686-linux-gnu/libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build.make libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/molecularpropextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build.make libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build [ 53%] Built target molecularpropextension make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/pythonterminal.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build.make libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build [ 54%] Built target pythonterminal make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/CMakeFiles/povrayextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 55%] Built target povrayextension make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/symmetry/CMakeFiles/symmetryextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/spectra /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/crystallography /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography /<>/obj-i686-linux-gnu/libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/DependInfo.cmake --color= [ 56%] Built target symmetryextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/spectra /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra /<>/obj-i686-linux-gnu/libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build.make libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build.make libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/vibrationextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 57%] Built target vibrationextension make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/orbitalextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/surfaces /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces /<>/obj-i686-linux-gnu/libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/DependInfo.cmake --color= [ 59%] Built target orbitalextension make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/swcntbuilder /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder /<>/obj-i686-linux-gnu/libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/crystallography/CMakeFiles/crystallographyextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 63%] Built target spectraextension make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/depend make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build.make libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build [ 68%] Built target crystallographyextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/qtaim /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim /<>/obj-i686-linux-gnu/libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build.make libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/quantuminput /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/surfaces/CMakeFiles/surfaceextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 69%] Built target surfaceextension make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/depend make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/swcntbuilder/CMakeFiles/swcntbuilderextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build.make libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build [ 70%] Built target swcntbuilderextension make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/quantuminput /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput /<>/obj-i686-linux-gnu/libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/extensions/orca /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca /<>/obj-i686-linux-gnu/libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/gamessextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/qtaim/CMakeFiles/qtaimextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 72%] Built target gamessextension make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/smartscolor.dir/DependInfo.cmake --color= [ 73%] Built target qtaimextension make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/customcolor.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/smartscolor.dir/build.make libavogadro/src/colors/CMakeFiles/smartscolor.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build.make libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build make -f libavogadro/src/colors/CMakeFiles/customcolor.dir/build.make libavogadro/src/colors/CMakeFiles/customcolor.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build.make libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/customcolor.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/smartscolor.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 73%] Built target smartscolor make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/depend [ 73%] Built target customcolor make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/distancecolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/residuecolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/quantuminput/CMakeFiles/inputfileextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/distancecolor.dir/build.make libavogadro/src/colors/CMakeFiles/distancecolor.dir/build [ 79%] Built target inputfileextension make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/residuecolor.dir/build.make libavogadro/src/colors/CMakeFiles/residuecolor.dir/build make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/extensions/orca/CMakeFiles/orcaextension.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/DependInfo.cmake --color= [ 81%] Built target orcaextension make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/colors /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/colors /<>/obj-i686-linux-gnu/libavogadro/src/colors/CMakeFiles/chargecolor.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/distancecolor.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 81%] Built target distancecolor make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/libavogadro/src/python /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/libavogadro/src/python /<>/obj-i686-linux-gnu/libavogadro/src/python/CMakeFiles/python-module.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/residuecolor.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 82%] Built target residuecolor make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/depend make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build.make libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/colors/CMakeFiles/chargecolor.dir/build.make libavogadro/src/colors/CMakeFiles/chargecolor.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/avogadro/src /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/avogadro/src /<>/obj-i686-linux-gnu/avogadro/src/CMakeFiles/avogadro-app.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/atomindexcolor.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/colors/CMakeFiles/chargecolor.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 82%] Built target atomindexcolor [ 83%] Built target chargecolor make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f libavogadro/src/python/CMakeFiles/python-module.dir/build.make libavogadro/src/python/CMakeFiles/python-module.dir/build make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f avogadro/src/CMakeFiles/avogadro-app.dir/build.make avogadro/src/CMakeFiles/avogadro-app.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'libavogadro/src/python/CMakeFiles/python-module.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 87%] Built target python-module make[3]: Entering directory '/<>/obj-i686-linux-gnu' make[3]: Nothing to be done for 'avogadro/src/CMakeFiles/avogadro-app.dir/build'. make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [100%] Built target avogadro-app make[2]: Leaving directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-i686-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/avogadro/AvogadroConfig.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/AvogadroConfigVersion.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/AvogadroUse.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/cmake/FindEigen2.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/cmake/FindEigen3.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/cmake/FindGLEW.cmake -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/propanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trichloroacetic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-malic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/butanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-malic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/formic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2_2-trifluoroacetic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/E-butenedioic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-tartaric_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-tartaric_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/oxalic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/acetic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/isobutyric_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/citric_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/2_2-dichloroacetic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-lactic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/L-ascorbic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carboxylic_acids/D-lactic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ligands -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ligands/Cp-cyclopentadienyl.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hex-3-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-4-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-3-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/oct-1-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-4-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-but-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/3Z_3-ethylhepta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/3E-penta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hept-3-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/hept-1-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/propene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/pent-1-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/ethene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-oct-3-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-hex-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/3Z-penta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hex-3-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/hex-1-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hex-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-hept-3-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/2-methylbuta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-pent-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-pent-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/E-oct-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/but-1-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/2-methylbut-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkenes/Z-but-2-ene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nitriles -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nitriles/isobutyronitrile.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nitriles/butyronitrile.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nitriles/1_1_1-trichloroacetonitrile.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nitriles/acetonitrile.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nitriles/propionitrile.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tyrosine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-cysteine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-asparagine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-phenylalanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-threonine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-asparagine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-threonine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-4-nitrophenylalanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-tryptophan.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-lysine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-allo-isoleucine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-methionine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-methionine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-valine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-cysteine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-proline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/glycine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-histidine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-glutamic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-arginine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-isoleucine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-proline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-isoleucine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-phenylalanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-lysine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-arginine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-glutamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-aspartic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-alanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-valine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-glutamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-serine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tyrosine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-tryptophan.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-histidine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-aspartic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-serine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-alanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-allo-threonine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/L-leucine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amino_acids/D-leucine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3_5-triene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_4-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclopentene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/Z-cyclooctene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_4-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/Z-cycloheptene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclopenta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5_7-tetraene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3_5-triene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohexa-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cyclohepta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkenes/cycloocta-1_3-diene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/2-aminoethanol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-1-ol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/ethane-1_2-diol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/ethanol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclopentanol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/propan-2-ol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/but-2-yne-1_4-diol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/cyclohexanol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/propane-1_2_3-triol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alcohols/methanol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/norbornane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-twist-boat.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cycloheptane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclooctane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclobutane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclopropane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclodecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/trans-decahydronaphthalene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/abietic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/1R-camphor.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclohexane-chair.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclopentane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cyclononane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/adamantane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cubane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_alkanes/cis-decahydronaphthalene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-allopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-fucopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-ribopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-mannopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-rhamnopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-fucopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-lyxopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-glucopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-tagatopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-gulopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-arabinopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-galactopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-xylopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-arabinopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-ribopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-xylopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-talopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-ribopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-xylopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-lyxopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-arabinopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-psicopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-idopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-idopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-tagatopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-L-sorbopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-allopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-lyxopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fructopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-arabinopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-glucuronopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-galactopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-rhamnopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-gulopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-talopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galacturonopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-ribopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-xylopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-rhamnopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-mannopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/alpha-D-galactopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-D-fucopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/cyclic_sugars/beta-L-lyxopyranose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/steroids -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/steroids/estradiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/steroids/testosterone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/steroids/cholesterol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydrofuran.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/1_4-dioxane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/di-tert-butylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/diethylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/dimethylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/dipropylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/tetrahydropyran.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/ethylmethylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/diisopropylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ethers/dibutylether.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/water.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-planar.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/5-trigonal-bipyramidal.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/4-tetrahedral.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/6-octahedral.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/5-square-pyramidal.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/3-trigonal-pyramidal.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/coordination/4-planar.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/furan.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/benzofuran.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/nicotinic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/picolinic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/pyridine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-pyrrole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-pyrazole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/nicotinamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/benzothiophene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/isonicotinic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/picolinamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1H-indole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_3-thiazole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_3-oxazole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/isonicotinamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_2-oxazole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/thiophene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/heteroaromatics/1_2-thiazole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkynes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkynes/acetylene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkynes/propyne.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/macrocycles -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/macrocycles/phthalocyanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/macrocycles/porphin.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/sulfoxides -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/sulfoxides/dimethyl_sulfoxide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/benzofuran.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/4H-chromene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthenequinone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/phenol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-carbazole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/nitrobenzene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/1H-indene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/anthracene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/toluene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/7H-purine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/aniline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/anisole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/benzene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/acridine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/coumarin.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/1_8-naphthyridine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-fluorene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/benzothiophene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/2H-chromene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/chromone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/phthalimide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/9H-xanthene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/uric_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/1H-indole.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/1_10-phenanthroline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/benzaldehyde.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/isoquinoline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/phenanthrene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/benzoyl_chloride.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/benzoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/quinazoline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/acenaphthylene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/quinoline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/cinnoline.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/caffeine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/tetralin.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aromatics/naphthalene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ketones -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ketones/p-benzoquinone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ketones/butanone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ketones/cyclohexanone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ketones/acetone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/ketones/methyl_vinyl_ketone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbamides -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbamides/urea.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/ammonia.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/piperidine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/azepane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/triethylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/S-sec-butylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/2-aminopropane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/triethylenediamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/1H-azepine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/pyrrolidine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/ethylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/methylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/diethylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/trimethylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/piperazine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/dimethylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amines/tert-butylamine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aldehydes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aldehydes/formaldehyde.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/aldehydes/acetaldehyde.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nucleobases -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nucleobases/guanine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nucleobases/cytosine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nucleobases/adenine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nucleobases/thymine.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/nucleobases/uracil.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/tridecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/nonane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/propane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/tetradecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/2-methylpropane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/dodecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/heptane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/ethane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/decane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/methane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/hexadecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/pentadecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/eicosane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/octane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/pentane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/tetracosane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/hexane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/butane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/alkanes/undecane.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-tagatose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-threose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-mannose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glucose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-ribulose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-arabinose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-galactose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-talose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-sorbose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-fructose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-idose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-altrose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-erythrulose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-gulose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/dihydroxyacetone.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-xylulose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-glyceraldehyde.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-allose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-lyxose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/carbohydrates/d-psicose.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amides -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amides/N_N-dimethylacetamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amides/oxamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amides/N_N-dimethylformamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amides/ethyl_carbamate.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/amides/acetamide.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C76.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C32.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C60-buckminsterfullerene.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C36.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C30.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C180.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C28.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C24.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C70.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C80.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/PCBM.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C20.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/PC70BM.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C26.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C78.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C240.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fullerenes/C50.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/oleic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/lauric_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/octanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/stearic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/pentanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linolenic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/palmitic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/hexanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/decanoic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/linoleic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/cervonic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/arachidonic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/fatty_acids/myristic_acid.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/2-methylproprane-2-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/octane-1-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/ethane-1_2-dithiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/ethanethiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/heptane-1-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/pentane-1-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/R_butane-2-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-1-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/proprane-2-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/hexane-1-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/butane-1-thiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/fragments/thiols/methanethiol.cml -- Installing: /<>/debian/tmp/usr/share/avogadro/builder -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-gln.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-asn.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-tyr.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-arg.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-ala.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-ser.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-arg.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-pro.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-ser.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-thr.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-val.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-cys.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-glu.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-lys.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-lys.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-leu.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-his.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-asp.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-ile.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-phe.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-met.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-pyl.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-ile.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-val.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-tyr.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-trp.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-asp.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-met.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-phe.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-pro.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-cys.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-glu.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-his.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-sec.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/gly.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-ala.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-asn.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-leu.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-thr.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/l-gln.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/builder/amino/d-trp.zmat -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/WC.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-2H-Moissanite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/SiC.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-3C-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-Moissanite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/W2C.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbides/SiC-6H-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/BAs.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/NiAs-Nickeline.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/Co.87Fe.11Ni.13As3-Skutterudite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/InAs.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/GaAs.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/AlAs.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/arsenides/CoAs3-Skutterudite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/antimonides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/antimonides/InSb.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/antimonides/GaSb.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/antimonides/AlSb.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Ni0.5Fe0.5)Pt-Ferronickelplatinum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/BiPd-Sobolevskite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/Au3Cu-Bogdanovite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/AuCu-Tetraauricupride.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/PtBi.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/CoFe-Wairauite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/Cu2MnAl-Heusler.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/FePt-Tetraferroplatinum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/intermetallics/(Cu0.5Fe0.5)Pt-Tulameenite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RSN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LTF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IWS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SSF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/HEU.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ANA.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CAN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LTL.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/NPO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ACO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/UEI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/NAB.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MTN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LTN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ITR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/OFF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MTF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AST.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BOF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SOF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SOS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ATV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MFI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/DOH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EPI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFY.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/DON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SBT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/FRA.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RWR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CZP.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ABW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SAF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/UWY.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/FER.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BSV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AHT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SBN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/JRY.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFX.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SAT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LEV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/TER.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/GON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ISV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/NSI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LOS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EZT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SVR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RUT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ITV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MWW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/TON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EUO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IWV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LIT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/YUG.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ERI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LTA.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SGT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/VNI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IRR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ZON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SBS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/UTL.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CHA.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SZR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MOR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BPH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/USI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SBE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RRO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/TSC.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MOZ.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CFI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/GIU.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ZSM-5.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RTE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SAO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AEN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IWR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IFR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFG.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/PAR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/APC.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/STT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/KFI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/GIS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MAZ.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/THO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/GME.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RTH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/OSO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MTT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ITH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CGS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BOG.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/STW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/TOL.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/APD.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/NAT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MAR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ATT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AEI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CHI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MVY.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MTW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/NES.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IMF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/FAR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ATN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AEL.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/VET.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ESV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ASV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFG.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BEA.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SAS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SSY.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/DDR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MEP.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/WEI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/PUN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/PHI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/UOS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/STO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ETR.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IWW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MEL.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EMT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CDO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/STF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AET.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MRE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AWO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LIO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/IHW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MFS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AFO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/OSI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MSE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BCT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/GOO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/DAC.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SIV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RHO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/TUN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/PAU.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/PON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ATO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ITE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ITW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CGF.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/DFT.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SOD.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/OBW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MER.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/JBW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CLO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/UFI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/STI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/DFO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BEC.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BIK.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/FAU.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MEI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SAV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EDI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/SFH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/BRE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/ATS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/RWY.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/OWE.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/NON.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/UOZ.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/EAB.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LOV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/VFI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/MSO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/WEN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/VSV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/CAS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/LAU.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/zeolites/AWW.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/PbSe-Clausthalite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/BiSe.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/ZnSe.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/Sb2Se3-Antimonselite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/CdSe-Cadmoselite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/HgSe-Tiemannite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/selenides/Bi2Se3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/nitrides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/nitrides/BN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/nitrides/GaN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/nitrides/Si3N4-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/nitrides/AlN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/nitrides/InN.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-Ih.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-III.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VII.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-II.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-IV.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/ice/H2O-Ice-VI.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydrides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydrides/KH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydrides/NaH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydrides/PdH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydrides/LiH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/YbO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Fe3O4-Magnetite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/MoO2-Tugarinovite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/CoFe2O4.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/HfO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SmO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/CoO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/IrO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/NiO-Bunsenite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/NiFe2O4.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/VO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/ZnO-Zincite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/BaO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/FeO-Wustite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SnO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/PdO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/K2O.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Fe2O3-Hematite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/MoO3-Molybdite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Cu2O-Cuprite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Ag2O.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SrO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/CuO-Tenorite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Rutile.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Na2O.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/TaO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Stishovite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3-IndiumOxide.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Quartz-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/PbO2-Scrutinyite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/CeO2-Cerianite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Rb2O.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Y2O3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/V2O3-Karelianite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite-tetrag.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/UO2-Uraninite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/PbO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/V2O5-Shcherbinaite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Li2O.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/La2O3-LanthanumOxide-A.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Anatase.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/MgO-Periclase.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/PtO2-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/MnO2-Pyrolusite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Al2O3-Corundum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/WO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/ZrO2-Cubic.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Rh2O3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/GeO2-Argutite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/RuO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/NbO2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/(MgAl2)O4-Spinel.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/CaO-Lime.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/In2O3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Cr2O3-Eskolaite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Cristobalite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/MnO-Manganosite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/VO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SiO2-Coesite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/Sc2O3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/AgO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/UO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/SnO2-Cassiterite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/CdO-Monteponite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/TiO2-Brookite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/oxides/NbO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydroxides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydroxides/Mg(OH)2-Brucite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydroxides/KOH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydroxides/LiOH.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ni(OH)2-Theophrastite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/hydroxides/Ca(OH)2-Portlandite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/SnS-Herzenbergite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/HgS-Metacinnabar.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/FeS2-Pyrite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/Sb2S3-Stibnite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Wurtzite-2H.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Hawleyite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/PbS-Galena.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/Bi2S3-Bismuthinite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Zincblende.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/ZnS-Sphalerite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfides/CdS-Greenockite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Bi-Bismuth.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ar-Argon.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Cr-Chromium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Rh-Rhodium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Sn-Tin-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/As-Arsenic.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/C-Graphite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/V-Vanadium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Zn-Zinc.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ag-Silver.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-epsilon.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Cs-Cesium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Co-Cobalt.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Cl-Chlorine.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/U-Uranium-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/I-Iodine.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/B-Boron.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Y-Yttrium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Tl-Thallium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ac-Actinium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/W-Tungsten.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pu-Plutonium-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Au-Gold.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ne-Neon.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ga-Gallium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Rb-Rubidium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Kr-Krypton.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Nb-Niobium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ti-Titanium-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Cu-Copper.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pd-Palladium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Al-Aluminum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/P-Phosphorus-black.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Sn-Tin-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/C-Diamond.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Li-Lithium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Sb-Antimony.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ge-Germanium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Np-Neptunium-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Na-Sodium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Be-Beryllium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Gd-Gadolinium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Zr-Zirconium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ba-Barium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Er-Erbium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Se-Selenium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pt-Platinum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/S6-Sulfur.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Te-Tellurium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Xe-Xenon.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Eu-Europium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/K-Potassium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/C-Lonsdaleite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Nd-Neodymium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Br-Bromine.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/La-Lanthanum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Si-Silicon.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Cd-Cadmium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Re-Rhenium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/As-Arsenolamprite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Yb-Ytterbium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ce-Cerium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-delta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ta-Tantalum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Hf-Hafnium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Lu-Lutetium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ir-Iridium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Sm-Samarium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Mo-Molybdenum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Tm-Thulium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Fe-Iron-delta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pb-Lead.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Mg-Magnesium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ru-Ruthenium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Dy-Dysprosium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/N-Nitrogen.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Th-Thorium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Mn-Manganese-gamma.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Am-Americium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ni-Nickel.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ca-Calcium-alpha.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/P-Phosphorus.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/He-Helium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/In-Indium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Sc-Scandium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Pr-Praseodymium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Os-Osmium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/S8-Sulfur-beta.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Tb-Terbium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Sr-Strontium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/elements/Ho-Holmium.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/SrSO4-Celestine.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/CuSO4.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/CoSO4.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-Anhydrite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/PbSO4-Anglesite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/CaSO4-2(H2O)-Gypsum.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/MgSO4.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/sulfates/BaSO4-Barite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbonates -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbonates/MgCO3-Magnesite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbonates/CaCO3-Calcite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbonates/Na2CO3-Natrite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbonates/CaMgC2O6-Dolomite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/carbonates/Li2CO3-Zabuyelite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/phosphides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/phosphides/GaP.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/phosphides/BP.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/phosphides/AlP.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/phosphides/InP.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates/MgTiO3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates/Mg2TiO4-Qandilite-tetrag.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates/SrTiO3-Tausonite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates/Mg2TiO4-Qandilite-cubic.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates/BaTiO3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/titanates/CaTiO3-Perovskite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-cub.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/(NH4)MgPO4-6(H2O)-Struvite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/LiNbO3-LithiumNiobate.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/CaC2O6.375H6-Oxalate-Weddellite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/Ca2C4O10H2.57-Oxalate-Whewellite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/LaAlO3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/Pb1Ti0.35Zr0.65O3-PZT-rhomb.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/FeMnO3-Bixbyite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/YBa2Cu3O6.9-YBCO.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/H3N-Ammonia.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/other/C10H10Fe-Ferrocene.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/telurides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/telurides/BiTe.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/telurides/Bi2Te3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/telurides/ZnTe.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/telurides/CdTe.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/telurides/PbTe-Altaite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/AlNa3F6-Cryolite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/PbFCl-Matlockite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/CsCl.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/CrCl3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/CdCl2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/CrCl2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/HgCl-Calomel.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/AlCl3.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/AgBr-Bromargyrite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/CdI2.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/AgCl-Chlorargyrite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/FeCl3-Molysite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/KBr.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/NaCl-Halite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/CaF2-Fluorite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/halides/KCl-Sylvite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/FeSi2O6H-Nontronite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Fe2.25Cl0.5H2.75-Fougerite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Zn2SiO5H2-Hemimorphite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si4O12Ca0.5-Montmorillonite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Mg4Si6O22.82H13.64-Sepiolite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Nacrite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/AlSi2O6H-Pyrophyllite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Kaolinite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Lepidolite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Al4KSi2O12-Illite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Mn1.854Fe1.656Mg0.537Si0.953O9H4-Guidottiite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Al2Si2O9H4-Dickite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Mg2Al2SiO9H4-Amesite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/clays/Mg3(O12Si4)H2-Vermiculite.cif -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/silicates -- Installing: /<>/debian/tmp/usr/share/avogadro/crystals/silicates/Be3Al2(SiO3)6-Beryl.cif -- Installing: /<>/debian/tmp/usr/lib/pkgconfig/avogadro.pc -- Installing: /<>/debian/tmp/usr/bin/avopkg -- Installing: /<>/debian/tmp/usr/features/avogadro.prf -- Installing: /<>/debian/tmp/usr/include/avogadro/animation.h -- Installing: /<>/debian/tmp/usr/include/avogadro/atom.h -- Installing: /<>/debian/tmp/usr/include/avogadro/bond.h -- Installing: /<>/debian/tmp/usr/include/avogadro/camera.h -- Installing: /<>/debian/tmp/usr/include/avogadro/color3f.h -- Installing: /<>/debian/tmp/usr/include/avogadro/colorbutton.h -- Installing: /<>/debian/tmp/usr/include/avogadro/color.h -- Installing: /<>/debian/tmp/usr/include/avogadro/config.h -- Installing: /<>/debian/tmp/usr/include/avogadro/cube.h -- Installing: /<>/debian/tmp/usr/include/avogadro/dockextension.h -- Installing: /<>/debian/tmp/usr/include/avogadro/dockwidget.h -- Installing: /<>/debian/tmp/usr/include/avogadro/elementtranslator.h -- Installing: /<>/debian/tmp/usr/include/avogadro/engine.h -- Installing: /<>/debian/tmp/usr/include/avogadro/extension.h -- Installing: /<>/debian/tmp/usr/include/avogadro/fragment.h -- Installing: /<>/debian/tmp/usr/include/avogadro/glhit.h -- Installing: /<>/debian/tmp/usr/include/avogadro/global.h -- Installing: /<>/debian/tmp/usr/include/avogadro/glwidget.h -- Installing: /<>/debian/tmp/usr/include/avogadro/idlist.h -- Installing: /<>/debian/tmp/usr/include/avogadro/meshgenerator.h -- Installing: /<>/debian/tmp/usr/include/avogadro/mesh.h -- Installing: /<>/debian/tmp/usr/include/avogadro/moleculefile.h -- Installing: /<>/debian/tmp/usr/include/avogadro/molecule.h -- Installing: /<>/debian/tmp/usr/include/avogadro/navigate.h -- Installing: /<>/debian/tmp/usr/include/avogadro/neighborlist.h -- Installing: /<>/debian/tmp/usr/include/avogadro/obeigenconv.h -- Installing: /<>/debian/tmp/usr/include/avogadro/painterdevice.h -- Installing: /<>/debian/tmp/usr/include/avogadro/painter.h -- Installing: /<>/debian/tmp/usr/include/avogadro/periodictableview.h -- Installing: /<>/debian/tmp/usr/include/avogadro/plotaxis.h -- Installing: /<>/debian/tmp/usr/include/avogadro/plotobject.h -- Installing: /<>/debian/tmp/usr/include/avogadro/plotpoint.h -- Installing: /<>/debian/tmp/usr/include/avogadro/plotwidget.h -- Installing: /<>/debian/tmp/usr/include/avogadro/plugin.h -- Installing: /<>/debian/tmp/usr/include/avogadro/pluginmanager.h -- Installing: /<>/debian/tmp/usr/include/avogadro/primitive.h -- Installing: /<>/debian/tmp/usr/include/avogadro/primitivelist.h -- Installing: /<>/debian/tmp/usr/include/avogadro/protein.h -- Installing: /<>/debian/tmp/usr/include/avogadro/residue.h -- Installing: /<>/debian/tmp/usr/include/avogadro/textmatrixeditor.h -- Installing: /<>/debian/tmp/usr/include/avogadro/toolgroup.h -- Installing: /<>/debian/tmp/usr/include/avogadro/tool.h -- Installing: /<>/debian/tmp/usr/include/avogadro/undosequence.h -- Installing: /<>/debian/tmp/usr/include/avogadro/zmatrix.h -- Installing: /<>/debian/tmp/usr/include/avogadro/pythoninterpreter.h -- Installing: /<>/debian/tmp/usr/include/avogadro/pythonscript.h -- Installing: /<>/debian/tmp/usr/include/avogadro/pythonerror.h -- Installing: /<>/debian/tmp/usr/lib/libavogadro.so.1.2.0 -- Installing: /<>/debian/tmp/usr/lib/libavogadro.so.1 -- Installing: /<>/debian/tmp/usr/lib/libavogadro.so -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ar.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_bg.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_bs.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ca.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ca@valencia.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_cs.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_da.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_de.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_el.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_en_AU.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_en_CA.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_en_GB.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_es.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_et.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_eu.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_fi.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_fr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_gl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_he.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_hi.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_hu.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_id.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_it.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ja.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_kn.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ko.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ms.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_nb.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_nl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_oc.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_pl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_pt.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_pt_BR.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ru.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_sk.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_sl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_sq.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_sr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_sv.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_th.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_tr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_ug.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_uk.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_vi.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_zh_CN.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/libavogadro_zh_TW.qm -- Installing: /<>/debian/tmp/usr/lib/avogadro/AvogadroTargets.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/AvogadroTargets-none.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/labelengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/labelengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/wireengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/wireengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/hbondengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/hbondengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/forceengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/forceengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/sphereengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/sphereengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/stickengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/stickengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/ribbonengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/ribbonengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/cartoonengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/cartoonengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/ringengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/ringengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/polygonengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/polygonengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/surfaceengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/surfaceengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/axesengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/axesengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/dipoleengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/dipoleengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/simplewireengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/simplewireengine.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/engines/qtaimengine.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/engines/qtaimengine.so" to "" -- Installing: /<>/debian/tmp/usr/share/libavogadro/engineScripts/wireframe.py -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/drawtool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/drawtool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/bondcentrictool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/bondcentrictool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/clickmeasuretool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/clickmeasuretool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/selectrotatetool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/selectrotatetool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/autoopttool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/autoopttool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/manipulatetool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/manipulatetool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/autorotatetool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/autorotatetool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/tools/aligntool.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/tools/aligntool.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/propextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/propextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/cartesianextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/cartesianextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/molecularpropextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/molecularpropextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/forcefieldextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/forcefieldextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/hydrogensextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/hydrogensextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/invertchiralextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/invertchiralextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/selectextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/selectextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/insertfragmentextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/insertfragmentextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/insertpeptideextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/insertpeptideextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/insertdnaextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/insertdnaextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/h2methylextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/h2methylextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/pythonterminal.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/pythonterminal.so" to "" -- Installing: /<>/debian/tmp/usr/share/libavogadro/extensionScripts/example.py -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/animationextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/animationextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/povrayextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/povrayextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/vrmlextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/vrmlextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/fileimportextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/fileimportextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/shaderextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/shaderextension.so" to "" -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/clip.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/gooch.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/light.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/marble.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/per-pixel-lighting.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/per_pixel2.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/phong-use-diffuse.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/phong.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/plasma.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/x-ray-cryos.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/x-ray.vert -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/clip.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/gooch.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/light.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/marble.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/per-pixel-lighting.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/per_pixel2.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/phong-use-diffuse.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/phong.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/plasma.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/x-ray-cryos.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/x-ray.frag -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/phong.params -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/x-ray-cryos.params -- Installing: /<>/debian/tmp/usr/share/libavogadro/shaders/x-ray.params -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/supercellextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/supercellextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/networkfetchextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/networkfetchextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/gl2psextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/gl2psextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/symmetryextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/symmetryextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/cmake/libmsym/libmsymConfig.cmake -- Installing: /<>/debian/tmp/usr/lib/cmake/libmsym/libmsymConfigVersion.cmake -- Installing: /<>/debian/tmp/usr/lib/libmsym.a -- Installing: /<>/debian/tmp/usr/include/libmsym/msym.h -- Installing: /<>/debian/tmp/usr/include/libmsym/msym_error.h -- Installing: /<>/debian/tmp/usr/lib/cmake/libmsym/libmsymTargets.cmake -- Installing: /<>/debian/tmp/usr/lib/cmake/libmsym/libmsymTargets-none.cmake -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/crystallographyextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/crystallographyextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/vibrationextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/vibrationextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/spectraextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/spectraextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/surfaceextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/surfaceextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/orbitalextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/orbitalextension.so" to "" -- Installing: /<>/debian/tmp/usr/bin/qube -- Set runtime path of "/<>/debian/tmp/usr/bin/qube" to "" -- Installing: /<>/debian/tmp/usr/lib/libavogadro_OpenQube.so.0.1.0 -- Installing: /<>/debian/tmp/usr/lib/libavogadro_OpenQube.so.0 -- Installing: /<>/debian/tmp/usr/lib/libavogadro_OpenQube.so -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/swcntbuilderextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/swcntbuilderextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/qtaimextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/qtaimextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/inputfileextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/inputfileextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/gamessextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/gamessextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/extensions/orcaextension.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/extensions/orcaextension.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/colors/residuecolor.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/colors/residuecolor.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/colors/atomindexcolor.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/colors/atomindexcolor.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/colors/chargecolor.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/colors/chargecolor.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/colors/distancecolor.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/colors/distancecolor.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/colors/customcolor.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/colors/customcolor.so" to "" -- Installing: /<>/debian/tmp/usr/lib/avogadro/1_2/colors/smartscolor.so -- Set runtime path of "/<>/debian/tmp/usr/lib/avogadro/1_2/colors/smartscolor.so" to "" -- Installing: /<>/debian/tmp/usr/lib/python2.7/dist-packages/Avogadro.so -- Set runtime path of "/<>/debian/tmp/usr/lib/python2.7/dist-packages/Avogadro.so" to "" -- Installing: /<>/debian/tmp/usr/bin/avogadro -- Set runtime path of "/<>/debian/tmp/usr/bin/avogadro" to "" -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_af.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ar.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_bg.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ca.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ca@valencia.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_cs.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_da.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_de.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_el.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_en_AU.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_en_CA.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_en_GB.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_es.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_et.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_eu.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_fi.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_fr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_fr_CA.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_gl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_he.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_hi.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_hr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_hu.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_id.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_it.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ja.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_kn.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ko.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ms.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_nb.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_nl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_oc.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_pl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_pt.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_pt_BR.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ru.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_sk.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_sl.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_sq.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_sr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_sv.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ta.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_te.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_th.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_tr.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_ug.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_uk.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_vi.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_zh_CN.qm -- Installing: /<>/debian/tmp/usr/share/avogadro/i18n/avogadro_zh_TW.qm -- Installing: /<>/debian/tmp/usr/share/applications/avogadro.desktop -- Installing: /<>/debian/tmp/usr/share/pixmaps/avogadro-icon.png -- Installing: /<>/debian/tmp/usr/share/man/man1/avogadro.1 -- Installing: /<>/debian/tmp/usr/share/man/man1/avopkg.1 make[1]: Leaving directory '/<>/obj-i686-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install --list-missing dh_install: Please use dh_missing --list-missing/--fail-missing instead dh_install: This feature will be removed in compat 12. dh_missing: usr/lib/libmsym.a exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/libmsym/libmsymConfig.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/libmsym/libmsymTargets-none.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/libmsym/libmsymTargets.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/cmake/libmsym/libmsymConfigVersion.cmake exists in debian/tmp but is not installed to anywhere dh_missing: usr/share/libavogadro/extensionScripts/example.py exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: avogadro (6), avogadro-data (4), libavogadro-dev (11), libavogadro1 (8), python-avogadro (2) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a debian/rules override_dh_python2 make[1]: Entering directory '/<>' dh_python2 -ppython-avogadro I: dh_python2 fs:322: renaming Avogadro.so to Avogadro.i386-linux-gnu.so W: dh_python2 dh_python2:67: public extension linked with libpython2.7: Avogadro.i386-linux-gnu.so dh_numpy -ppython-avogadro dh_sip make[1]: Leaving directory '/<>' dh_installmenu -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package python-avogadro: unused substitution variable ${python:Versions} dpkg-gencontrol: warning: package avogadro: unused substitution variable ${sip:Depends} dpkg-gencontrol: warning: package libavogadro-dev: unused substitution variable ${sip:Depends} dpkg-gencontrol: warning: package libavogadro1: unused substitution variable ${sip:Depends} dpkg-gencontrol: warning: package python-avogadro: unused substitution variable ${python:Versions} dpkg-gencontrol: warning: package avogadro: unused substitution variable ${sip:Depends} dpkg-gencontrol: warning: package libavogadro1: unused substitution variable ${sip:Depends} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 pkgstriptranslations: processing avogadro (in debian/avogadro); do_strip: , oemstrip: pkgstriptranslations: processing libavogadro-dev (in debian/libavogadro-dev); do_strip: , oemstrip: pkgstriptranslations: processing libavogadro1 (in debian/libavogadro1); do_strip: , oemstrip: pkgstriptranslations: processing python-avogadro-dbgsym (in debian/.debhelper/python-avogadro/dbgsym-root); do_strip: , oemstrip: debian/avogadro/usr/share/applications/avogadro.desktop: does not have gettext domain, not stripping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/avogadro/DEBIAN/control, package avogadro, directory debian/avogadro Searching for duplicated docs in dependency libavogadro1... pkgstripfiles: processing control file: debian/libavogadro-dev/DEBIAN/control, package libavogadro-dev, directory debian/libavogadro-dev symlinking changelog.Debian.gz in avogadro to file in libavogadro1 INFO: pkgstripfiles: waiting for lock (libavogadro-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package avogadro ... pkgstripfiles: processing control file: debian/libavogadro1/DEBIAN/control, package libavogadro1, directory debian/libavogadro1 INFO: pkgstripfiles: waiting for lock (libavogadro1) ... WARNING: optipng failed on usr/share/pixmaps/avogadro-icon.png, ignoring o pkgstripfiles: PNG optimization (1/0) for package avogadro took 0 s dpkg-deb: building package 'avogadro' in '../avogadro_1.2.0-4_i386.deb'. INFO: pkgstripfiles: waiting for lock (libavogadro-dev) ... pkgstripfiles: Truncating usr/share/doc/libavogadro1/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libavogadro1 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libavogadro1' in '../libavogadro1_1.2.0-4_i386.deb'. Searching for duplicated docs in dependency libavogadro1... symlinking changelog.Debian.gz in libavogadro-dev to file in libavogadro1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libavogadro-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libavogadro-dev' in '../libavogadro-dev_1.2.0-4_i386.deb'. INFO: pkgstriptranslations version 141 pkgstriptranslations: processing python-avogadro (in debian/python-avogadro); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python-avogadro/DEBIAN/control, package python-avogadro, directory debian/python-avogadro Searching for duplicated docs in dependency libavogadro1... symlinking changelog.Debian.gz in python-avogadro to file in libavogadro1 pkgstripfiles: Running PNG optimization (using 4 cpus) for package python-avogadro ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python-avogadro' in '../python-avogadro_1.2.0-4_i386.deb'. pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/python-avogadro/dbgsym-root/DEBIAN/control, package python-avogadro-dbgsym, directory debian/.debhelper/python-avogadro/dbgsym-root dpkg-deb: building package 'python-avogadro-dbgsym' in 'debian/.debhelper/scratch-space/build-python-avogadro/python-avogadro-dbgsym_1.2.0-4_i386.deb'. INFO: pkgstriptranslations version 141 pkgstriptranslations: processing libavogadro1-dbgsym (in debian/.debhelper/libavogadro1/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/libavogadro1/dbgsym-root/DEBIAN/control, package libavogadro1-dbgsym, directory debian/.debhelper/libavogadro1/dbgsym-root dpkg-deb: building package 'libavogadro1-dbgsym' in 'debian/.debhelper/scratch-space/build-libavogadro1/libavogadro1-dbgsym_1.2.0-4_i386.deb'. Renaming python-avogadro-dbgsym_1.2.0-4_i386.deb to python-avogadro-dbgsym_1.2.0-4_i386.ddeb INFO: pkgstriptranslations version 141 pkgstriptranslations: processing avogadro-dbgsym (in debian/.debhelper/avogadro/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/avogadro/dbgsym-root/DEBIAN/control, package avogadro-dbgsym, directory debian/.debhelper/avogadro/dbgsym-root dpkg-deb: building package 'avogadro-dbgsym' in 'debian/.debhelper/scratch-space/build-avogadro/avogadro-dbgsym_1.2.0-4_i386.deb'. Renaming avogadro-dbgsym_1.2.0-4_i386.deb to avogadro-dbgsym_1.2.0-4_i386.ddeb Renaming libavogadro1-dbgsym_1.2.0-4_i386.deb to libavogadro1-dbgsym_1.2.0-4_i386.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../avogadro_1.2.0-4_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build avogadro-1.2.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180718-1725 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ avogadro_1.2.0-4_i386.changes: ------------------------------ Format: 1.8 Date: Wed, 18 Jul 2018 03:47:43 -0400 Source: avogadro Binary: avogadro avogadro-data libavogadro1 libavogadro-dev python-avogadro Architecture: i386 Version: 1.2.0-4 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andrius Merkys Description: avogadro - Molecular Graphics and Modelling System avogadro-data - Molecular Graphics and Modelling System (Data Files) libavogadro-dev - Molecular Graphics and Modelling System (development files) libavogadro1 - Molecular Graphics and Modelling System (library) python-avogadro - Molecular Graphics and Modelling System (Python module) Changes: avogadro (1.2.0-4) unstable; urgency=medium . [ Daniel Leidert ] * Adding debian/avogadro.menu . [ Steffen Möller ] * Added RRID to metadata . [ Andreas Tille ] * Homepage is not a defined field for d/u/metadata (any more) . [ Andrius Merkys ] * Updating VCS-* fields. * Linking against system-installed libsymspg. * Adding copyright information for libmsym and spglib. 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It can visualize properties like molecular orbitals or electrostatic potentials and features an intuitive molecular builder. . Features include: * Molecular modeller with automatic force-field based geometry optimization * Molecular Mechanics including constraints and conformer searches * Visualization of molecular orbitals and general isosurfaces * Visualization of vibrations and plotting of vibrational spectra * Support for crystallographic unit cells * Input generation for the Gaussian, GAMESS and MOLPRO quantum chemistry packages * Flexible plugin architecture and Python scripting . 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files) Avogadro is a molecular graphics and modelling system targeted at small to medium molecules. 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-rw-r--r-- root/root 823 2018-07-18 07:47 ./usr/share/qt4/mkspecs/avogadro.prf libavogadro1_1.2.0-4_i386.deb ----------------------------- new debian package, version 2.0. size 1811692 bytes: control archive=2756 bytes. 1059 bytes, 20 lines control 5270 bytes, 64 lines md5sums 63 bytes, 2 lines shlibs 74 bytes, 2 lines triggers Package: libavogadro1 Source: avogadro Version: 1.2.0-4 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 7250 Depends: libboost-python1.67.0, libc6 (>= 2.7), libgcc1 (>= 1:3.0), libgl1, libglew2.0 (>= 1.12.0), libglu1-mesa | libglu1, libopenbabel5, libpython2.7 (>= 2.7), libqt4-network (>= 4:4.5.3), libqt4-opengl (>= 4:4.5.3), libqtcore4 (>= 4:4.8.0), libqtgui4 (>= 4:4.8.0), libstdc++6 (>= 5.2), libsymspg1 (>= 1.10.3), zlib1g (>= 1:1.1.4) Recommends: avogadro-data, python-avogadro Conflicts: libavogadro0 Replaces: libavogadro0 Section: libs Priority: optional Homepage: http://avogadro.cc/ Description: Molecular Graphics and Modelling System (library) Avogadro is a molecular graphics and modelling system targeted at small to medium molecules. It can visualize properties like molecular orbitals or electrostatic potentials and features an intuitive molecular builder. . This package provides the shared library. drwxr-xr-x root/root 0 2018-07-18 07:47 ./ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/lib/avogadro/ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/lib/avogadro/1_2/ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/lib/avogadro/1_2/colors/ -rw-r--r-- root/root 17828 2018-07-18 07:47 ./usr/lib/avogadro/1_2/colors/atomindexcolor.so -rw-r--r-- root/root 17828 2018-07-18 07:47 ./usr/lib/avogadro/1_2/colors/chargecolor.so -rw-r--r-- root/root 26020 2018-07-18 07:47 ./usr/lib/avogadro/1_2/colors/customcolor.so -rw-r--r-- root/root 17828 2018-07-18 07:47 ./usr/lib/avogadro/1_2/colors/distancecolor.so -rw-r--r-- root/root 34212 2018-07-18 07:47 ./usr/lib/avogadro/1_2/colors/residuecolor.so -rw-r--r-- root/root 30116 2018-07-18 07:47 ./usr/lib/avogadro/1_2/colors/smartscolor.so drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/lib/avogadro/1_2/engines/ -rw-r--r-- 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root/root 38312 2018-07-18 07:47 ./usr/lib/avogadro/1_2/engines/sphereengine.so -rw-r--r-- root/root 38308 2018-07-18 07:47 ./usr/lib/avogadro/1_2/engines/stickengine.so -rw-r--r-- root/root 58792 2018-07-18 07:47 ./usr/lib/avogadro/1_2/engines/surfaceengine.so -rw-r--r-- root/root 46504 2018-07-18 07:47 ./usr/lib/avogadro/1_2/engines/wireengine.so drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/lib/avogadro/1_2/extensions/ -rw-r--r-- root/root 112036 2018-07-18 07:47 ./usr/lib/avogadro/1_2/extensions/animationextension.so -rw-r--r-- root/root 79272 2018-07-18 07:47 ./usr/lib/avogadro/1_2/extensions/cartesianextension.so -rw-r--r-- root/root 361896 2018-07-18 07:47 ./usr/lib/avogadro/1_2/extensions/crystallographyextension.so -rw-r--r-- root/root 42408 2018-07-18 07:47 ./usr/lib/avogadro/1_2/extensions/fileimportextension.so -rw-r--r-- root/root 144808 2018-07-18 07:47 ./usr/lib/avogadro/1_2/extensions/forcefieldextension.so -rw-r--r-- root/root 365992 2018-07-18 07:47 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root/root 46504 2018-07-18 07:47 ./usr/lib/avogadro/1_2/tools/clickmeasuretool.so -rw-r--r-- root/root 91560 2018-07-18 07:47 ./usr/lib/avogadro/1_2/tools/drawtool.so -rw-r--r-- root/root 75172 2018-07-18 07:47 ./usr/lib/avogadro/1_2/tools/manipulatetool.so -rw-r--r-- root/root 58788 2018-07-18 07:47 ./usr/lib/avogadro/1_2/tools/selectrotatetool.so lrwxrwxrwx root/root 0 2018-07-18 07:47 ./usr/lib/libavogadro.so.1 -> libavogadro.so.1.2.0 -rw-r--r-- root/root 1119612 2018-07-18 07:47 ./usr/lib/libavogadro.so.1.2.0 lrwxrwxrwx root/root 0 2018-07-18 07:47 ./usr/lib/libavogadro_OpenQube.so.0 -> libavogadro_OpenQube.so.0.1.0 -rw-r--r-- root/root 460148 2018-07-18 07:47 ./usr/lib/libavogadro_OpenQube.so.0.1.0 drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/share/ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/share/doc/libavogadro1/ -rw-r--r-- root/root 1437 2018-07-18 07:47 ./usr/share/doc/libavogadro1/changelog.Debian.gz -rw-r--r-- root/root 9561 2018-07-18 07:24 ./usr/share/doc/libavogadro1/copyright python-avogadro_1.2.0-4_i386.deb -------------------------------- new debian package, version 2.0. size 235168 bytes: control archive=980 bytes. 1110 bytes, 20 lines control 250 bytes, 3 lines md5sums Package: python-avogadro Source: avogadro Version: 1.2.0-4 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1233 Depends: python-numpy (>= 1:1.14.3), python-qt4, python-sip, python (<< 2.8), python (>= 2.7~), python-numpy-abi9, python:any (<< 2.8), python:any (>= 2.7~), libavogadro1, libboost-python1.67.0, libc6 (>= 2.4), libgcc1 (>= 1:3.0), libpython2.7 (>= 2.7), libqt4-opengl (>= 4:4.5.3), libqtcore4 (>= 4:4.7.0~beta1), libqtgui4 (>= 4:4.5.3), libstdc++6 (>= 5), sip-api-12.5 Breaks: libavogadro0 (<< 0.9.8) Replaces: libavogadro0 (<< 0.9.8) Provides: python2.7-avogadro Section: python Priority: optional Homepage: http://avogadro.cc/ Description: Molecular Graphics and Modelling System (Python module) Avogadro is a molecular graphics and modelling system targeted at small to medium molecules. It can visualize properties like molecular orbitals or electrostatic potentials and features an intuitive molecular builder. . This package provides the Python module. drwxr-xr-x root/root 0 2018-07-18 07:47 ./ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/lib/python2.7/ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/lib/python2.7/dist-packages/ -rw-r--r-- root/root 1228200 2018-07-18 07:47 ./usr/lib/python2.7/dist-packages/Avogadro.i386-linux-gnu.so drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/share/ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/share/doc/python-avogadro/ lrwxrwxrwx root/root 0 2018-07-18 07:47 ./usr/share/doc/python-avogadro/changelog.Debian.gz -> ../libavogadro1/changelog.Debian.gz -rw-r--r-- root/root 9561 2018-07-18 07:24 ./usr/share/doc/python-avogadro/copyright drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/share/libavogadro/ drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/share/libavogadro/engineScripts/ -rw-r--r-- root/root 1905 2016-06-03 19:31 ./usr/share/libavogadro/engineScripts/wireframe.py drwxr-xr-x root/root 0 2018-07-18 07:47 ./usr/share/libavogadro/extensionScripts/ +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 1447548 Build-Time: 682 Distribution: cosmic-proposed Host Architecture: i386 Install-Time: 86 Job: avogadro_1.2.0-4.dsc Machine Architecture: amd64 Package: avogadro Package-Time: 770 Source-Version: 1.2.0-4 Space: 1447548 Status: successful Version: 1.2.0-4 -------------------------------------------------------------------------------- Finished at 20180718-1725 Build needed 00:12:50, 1447548k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15143968 Scanning for processes to kill in build PACKAGEBUILD-15143968