RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos01-ppc64el-027 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:26:02 UTC 2017 ppc64le Buildd toolchain package versions: launchpad-buildd_154 python-lpbuildd_154 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 26 Oct 19:27:52 ntpdate[1792]: adjust time server 10.211.37.1 offset 0.028466 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13625606 /home/buildd/filecache-default/64ab4a3b1843816d631a3747c16f42fa2d8de59d Creating target for build PACKAGEBUILD-13625606 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13625606 Starting target for build PACKAGEBUILD-13625606 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13625606 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-13625606 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13625606 Updating target for build PACKAGEBUILD-13625606 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [78.6 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el Packages [1020 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [542 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe ppc64el Packages [7834 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4788 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el Packages [93.8 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [44.6 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el Packages [148 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [83.0 kB] Fetched 15.0 MB in 3s (4612 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: liblsan0 libtsan0 The following packages will be upgraded: apt apt-transport-https base-files binutils binutils-common binutils-powerpc64le-linux-gnu build-essential coreutils cpp-7 dpkg dpkg-dev g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv libapt-pkg5.0 libasan4 libatomic1 libbinutils libc-bin libc-dev-bin libc6 libc6-dev libcap2 libcc1-0 libcurl3-gnutls libdpkg-perl libgcc-7-dev libgcc1 libgomp1 libhogweed4 libitm1 libnettle6 libpcre3 libpng16-16 libseccomp2 libsemanage-common libsemanage1 libstdc++-7-dev libstdc++6 libsystemd0 libubsan0 libudev1 linux-libc-dev multiarch-support systemd systemd-sysv 49 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 44.6 MB of archives. After this operation, 7064 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main ppc64el base-files ppc64el 10ubuntu1 [55.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main ppc64el coreutils ppc64el 8.26-3ubuntu4 [1251 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el dpkg ppc64el 1.19.0.4ubuntu1 [1149 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc6-dev ppc64el 2.26-0ubuntu2 [2458 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc-dev-bin ppc64el 2.26-0ubuntu2 [65.4 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main ppc64el linux-libc-dev ppc64el 4.13.0-16.19 [946 kB] Get:7 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libitm1 ppc64el 7.2.0-12ubuntu1 [29.7 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el gcc-7-base ppc64el 7.2.0-12ubuntu1 [18.3 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libgcc1 ppc64el 1:7.2.0-12ubuntu1 [29.7 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libgomp1 ppc64el 7.2.0-12ubuntu1 [69.3 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libatomic1 ppc64el 7.2.0-12ubuntu1 [8496 B] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libasan4 ppc64el 7.2.0-12ubuntu1 [369 kB] Get:13 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el liblsan0 ppc64el 7.2.0-12ubuntu1 [134 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libtsan0 ppc64el 7.2.0-12ubuntu1 [289 kB] Get:15 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libubsan0 ppc64el 7.2.0-12ubuntu1 [136 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el cpp-7 ppc64el 7.2.0-12ubuntu1 [6261 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libcc1-0 ppc64el 7.2.0-12ubuntu1 [39.2 kB] Get:18 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el g++-7 ppc64el 7.2.0-12ubuntu1 [7105 kB] Get:19 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el gcc-7 ppc64el 7.2.0-12ubuntu1 [6898 kB] Get:20 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libgcc-7-dev ppc64el 7.2.0-12ubuntu1 [985 kB] Get:21 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libstdc++-7-dev ppc64el 7.2.0-12ubuntu1 [1526 kB] Get:22 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libstdc++6 ppc64el 7.2.0-12ubuntu1 [449 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libbinutils ppc64el 2.29.1-6ubuntu1 [457 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el binutils ppc64el 2.29.1-6ubuntu1 [3330 B] Get:25 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el binutils-common ppc64el 2.29.1-6ubuntu1 [190 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.29.1-6ubuntu1 [1969 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc6 ppc64el 2.26-0ubuntu2 [2619 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main ppc64el libc-bin ppc64el 2.26-0ubuntu2 [573 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main ppc64el libudev1 ppc64el 234-2ubuntu12 [57.9 kB] Get:30 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libapt-pkg5.0 ppc64el 1.5.1 [880 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main ppc64el gpgv ppc64el 2.1.15-1ubuntu8 [218 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el apt ppc64el 1.5.1 [1173 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcap2 ppc64el 1:2.25-1.1 [13.7 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main ppc64el libseccomp2 ppc64el 2.3.1-2.1ubuntu3 [47.2 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main ppc64el systemd ppc64el 234-2ubuntu12 [2903 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsystemd0 ppc64el 234-2ubuntu12 [225 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main ppc64el systemd-sysv ppc64el 234-2ubuntu12 [10.8 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcre3 ppc64el 2:8.39-5ubuntu3 [224 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsemanage-common all 2.7-2 [6916 B] Get:40 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsemanage1 ppc64el 2.7-2 [85.4 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main ppc64el libnettle6 ppc64el 3.3-2 [120 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhogweed4 ppc64el 3.3-2 [134 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main ppc64el gnupg ppc64el 2.1.15-1ubuntu8 [847 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main ppc64el gnupg-agent ppc64el 2.1.15-1ubuntu8 [291 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main ppc64el multiarch-support ppc64el 2.26-0ubuntu2 [6832 B] Get:46 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpng16-16 ppc64el 1.6.34-1 [200 kB] Get:47 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libcurl3-gnutls ppc64el 7.55.1-1ubuntu2.1 [197 kB] Get:48 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el apt-transport-https ppc64el 1.5.1 [42.5 kB] Get:49 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el dpkg-dev all 1.19.0.4ubuntu1 [607 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libdpkg-perl all 1.19.0.4ubuntu1 [211 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main ppc64el build-essential ppc64el 12.4ubuntu1 [4754 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 44.6 MB in 1s (39.2 MB/s) (Reading database ... 12537 files and directories currently installed.) Preparing to unpack .../base-files_10ubuntu1_ppc64el.deb ... Unpacking base-files (10ubuntu1) over (9.6ubuntu101) ... Setting up base-files (10ubuntu1) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 12537 files and directories currently installed.) Preparing to unpack .../coreutils_8.26-3ubuntu4_ppc64el.deb ... Unpacking coreutils (8.26-3ubuntu4) over (8.26-3ubuntu3) ... Setting up coreutils (8.26-3ubuntu4) ... (Reading database ... 12537 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.4ubuntu1_ppc64el.deb ... Unpacking dpkg (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Setting up dpkg (1.19.0.4ubuntu1) ... Installing new version of config file /etc/alternatives/README ... Installing new version of config file /etc/cron.daily/dpkg ... Installing new version of config file /etc/logrotate.d/dpkg ... (Reading database ... 12539 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.26-0ubuntu2_ppc64el.deb ... Unpacking libc6-dev:ppc64el (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../libc-dev-bin_2.26-0ubuntu2_ppc64el.deb ... Unpacking libc-dev-bin (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../linux-libc-dev_4.13.0-16.19_ppc64el.deb ... Unpacking linux-libc-dev:ppc64el (4.13.0-16.19) over (4.13.0-11.12) ... Preparing to unpack .../libitm1_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libitm1:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../gcc-7-base_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking gcc-7-base:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Setting up gcc-7-base:ppc64el (7.2.0-12ubuntu1) ... (Reading database ... 12539 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libgcc1:ppc64el (1:7.2.0-12ubuntu1) over (1:7.2.0-6ubuntu1) ... Setting up libgcc1:ppc64el (1:7.2.0-12ubuntu1) ... (Reading database ... 12539 files and directories currently installed.) Preparing to unpack .../00-libgomp1_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libgomp1:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../01-libatomic1_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libatomic1:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../02-libasan4_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libasan4:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Selecting previously unselected package liblsan0:ppc64el. Preparing to unpack .../03-liblsan0_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking liblsan0:ppc64el (7.2.0-12ubuntu1) ... Selecting previously unselected package libtsan0:ppc64el. Preparing to unpack .../04-libtsan0_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libtsan0:ppc64el (7.2.0-12ubuntu1) ... Preparing to unpack .../05-libubsan0_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libubsan0:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../06-cpp-7_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking cpp-7 (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../07-libcc1-0_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libcc1-0:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../08-g++-7_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking g++-7 (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../09-gcc-7_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking gcc-7 (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../10-libgcc-7-dev_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libgcc-7-dev:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../11-libstdc++-7-dev_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libstdc++-7-dev:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Preparing to unpack .../12-libstdc++6_7.2.0-12ubuntu1_ppc64el.deb ... Unpacking libstdc++6:ppc64el (7.2.0-12ubuntu1) over (7.2.0-6ubuntu1) ... Setting up libstdc++6:ppc64el (7.2.0-12ubuntu1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libbinutils_2.29.1-6ubuntu1_ppc64el.deb ... Unpacking libbinutils:ppc64el (2.29.1-6ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils_2.29.1-6ubuntu1_ppc64el.deb ... Unpacking binutils (2.29.1-6ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils-common_2.29.1-6ubuntu1_ppc64el.deb ... Unpacking binutils-common:ppc64el (2.29.1-6ubuntu1) over (2.29.1-1ubuntu1) ... Preparing to unpack .../binutils-powerpc64le-linux-gnu_2.29.1-6ubuntu1_ppc64el.deb ... Unpacking binutils-powerpc64le-linux-gnu (2.29.1-6ubuntu1) over (2.29.1-1ubuntu1) ... 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Preparing to unpack .../gpgv_2.1.15-1ubuntu8_ppc64el.deb ... Unpacking gpgv (2.1.15-1ubuntu8) over (2.1.15-1ubuntu7) ... Setting up gpgv (2.1.15-1ubuntu8) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../archives/apt_1.5.1_ppc64el.deb ... Unpacking apt (1.5.1) over (1.5~rc4) ... Setting up apt (1.5.1) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.25-1.1_ppc64el.deb ... Unpacking libcap2:ppc64el (1:2.25-1.1) over (1:2.25-1) ... Preparing to unpack .../libseccomp2_2.3.1-2.1ubuntu3_ppc64el.deb ... Unpacking libseccomp2:ppc64el (2.3.1-2.1ubuntu3) over (2.3.1-2.1ubuntu2) ... Preparing to unpack .../systemd_234-2ubuntu12_ppc64el.deb ... Unpacking systemd (234-2ubuntu12) over (234-2ubuntu10) ... Preparing to unpack .../libsystemd0_234-2ubuntu12_ppc64el.deb ... Unpacking libsystemd0:ppc64el (234-2ubuntu12) over (234-2ubuntu10) ... Setting up libsystemd0:ppc64el (234-2ubuntu12) ... Setting up libcap2:ppc64el (1:2.25-1.1) ... Setting up libseccomp2:ppc64el (2.3.1-2.1ubuntu3) ... Setting up systemd (234-2ubuntu12) ... Removing empty /etc/rc.local addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removed /etc/systemd/system/network-online.target.wants/systemd-networkd-wait-online.service. (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../systemd-sysv_234-2ubuntu12_ppc64el.deb ... Unpacking systemd-sysv (234-2ubuntu12) over (234-2ubuntu10) ... Preparing to unpack .../libpcre3_2%3a8.39-5ubuntu3_ppc64el.deb ... Unpacking libpcre3:ppc64el (2:8.39-5ubuntu3) over (2:8.39-4) ... Setting up libpcre3:ppc64el (2:8.39-5ubuntu3) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libsemanage-common_2.7-2_all.deb ... Unpacking libsemanage-common (2.7-2) over (2.7-1) ... Setting up libsemanage-common (2.7-2) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libsemanage1_2.7-2_ppc64el.deb ... Unpacking libsemanage1:ppc64el (2.7-2) over (2.7-1) ... Setting up libsemanage1:ppc64el (2.7-2) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libnettle6_3.3-2_ppc64el.deb ... Unpacking libnettle6:ppc64el (3.3-2) over (3.3-1) ... Setting up libnettle6:ppc64el (3.3-2) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../libhogweed4_3.3-2_ppc64el.deb ... Unpacking libhogweed4:ppc64el (3.3-2) over (3.3-1) ... Setting up libhogweed4:ppc64el (3.3-2) ... (Reading database ... 12554 files and directories currently installed.) Preparing to unpack .../0-gnupg_2.1.15-1ubuntu8_ppc64el.deb ... Unpacking gnupg (2.1.15-1ubuntu8) over (2.1.15-1ubuntu7) ... Preparing to unpack .../1-gnupg-agent_2.1.15-1ubuntu8_ppc64el.deb ... Unpacking gnupg-agent (2.1.15-1ubuntu8) over (2.1.15-1ubuntu7) ... Preparing to unpack .../2-multiarch-support_2.26-0ubuntu2_ppc64el.deb ... Unpacking multiarch-support (2.26-0ubuntu2) over (2.26-0ubuntu1) ... Preparing to unpack .../3-libpng16-16_1.6.34-1_ppc64el.deb ... Unpacking libpng16-16:ppc64el (1.6.34-1) over (1.6.32-2) ... Preparing to unpack .../4-libcurl3-gnutls_7.55.1-1ubuntu2.1_ppc64el.deb ... Unpacking libcurl3-gnutls:ppc64el (7.55.1-1ubuntu2.1) over (7.55.1-1ubuntu1) ... Preparing to unpack .../5-apt-transport-https_1.5.1_ppc64el.deb ... Unpacking apt-transport-https (1.5.1) over (1.5~rc4) ... Preparing to unpack .../6-dpkg-dev_1.19.0.4ubuntu1_all.deb ... Unpacking dpkg-dev (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Preparing to unpack .../7-libdpkg-perl_1.19.0.4ubuntu1_all.deb ... Unpacking libdpkg-perl (1.19.0.4ubuntu1) over (1.18.24ubuntu1) ... Preparing to unpack .../8-build-essential_12.4ubuntu1_ppc64el.deb ... Unpacking build-essential (12.4ubuntu1) over (12.1ubuntu2) ... Setting up libgomp1:ppc64el (7.2.0-12ubuntu1) ... Setting up libatomic1:ppc64el (7.2.0-12ubuntu1) ... Setting up libcc1-0:ppc64el (7.2.0-12ubuntu1) ... Setting up libasan4:ppc64el (7.2.0-12ubuntu1) ... Setting up libpng16-16:ppc64el (1.6.34-1) ... Setting up libcurl3-gnutls:ppc64el (7.55.1-1ubuntu2.1) ... Setting up multiarch-support (2.26-0ubuntu2) ... Setting up systemd-sysv (234-2ubuntu12) ... Setting up libubsan0:ppc64el (7.2.0-12ubuntu1) ... Setting up libtsan0:ppc64el (7.2.0-12ubuntu1) ... Setting up linux-libc-dev:ppc64el (4.13.0-16.19) ... Setting up libdpkg-perl (1.19.0.4ubuntu1) ... Setting up cpp-7 (7.2.0-12ubuntu1) ... Setting up liblsan0:ppc64el (7.2.0-12ubuntu1) ... Setting up binutils-common:ppc64el (2.29.1-6ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up libc-dev-bin (2.26-0ubuntu2) ... Setting up gnupg-agent (2.1.15-1ubuntu8) ... Setting up libc6-dev:ppc64el (2.26-0ubuntu2) ... Setting up libitm1:ppc64el (7.2.0-12ubuntu1) ... Setting up apt-transport-https (1.5.1) ... Setting up libbinutils:ppc64el (2.29.1-6ubuntu1) ... Setting up binutils-powerpc64le-linux-gnu (2.29.1-6ubuntu1) ... Setting up gnupg (2.1.15-1ubuntu8) ... Setting up libgcc-7-dev:ppc64el (7.2.0-12ubuntu1) ... Setting up libstdc++-7-dev:ppc64el (7.2.0-12ubuntu1) ... Setting up binutils (2.29.1-6ubuntu1) ... Setting up gcc-7 (7.2.0-12ubuntu1) ... Setting up g++-7 (7.2.0-12ubuntu1) ... Setting up dpkg-dev (1.19.0.4ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-13625606 ppc64el bionic-proposed -c chroot:build-PACKAGEBUILD-13625606 --arch=ppc64el --dist=bionic-proposed --nolog augustus_3.3+dfsg-2build1.dsc Initiating build PACKAGEBUILD-13625606 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-97-generic #120-Ubuntu SMP Tue Sep 19 17:26:02 UTC 2017 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos01-ppc64el-027.buildd +==============================================================================+ | augustus 3.3+dfsg-2build1 (ppc64el) 26 Oct 2017 19:28 | +==============================================================================+ Package: augustus Version: 3.3+dfsg-2build1 Source Version: 3.3+dfsg-2build1 Distribution: bionic-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/augustus-JCTFgX/augustus-3.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/augustus-JCTFgX' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-13625606/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- augustus_3.3+dfsg-2build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-BxniEf/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-BxniEf/apt_archive ./ InRelease Get:2 copy:/<>/resolver-BxniEf/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-BxniEf/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-BxniEf/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-BxniEf/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-BxniEf/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12558 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), libsqlite3-dev, libboost-iostreams-dev, zlib1g-dev, libgsl-dev, liblpsolve55-dev, libbamtools-dev, libbam-dev, libhts-dev, libncurses5-dev, asciidoctor Filtered Build-Depends: debhelper (>= 10), libsqlite3-dev, libboost-iostreams-dev, zlib1g-dev, libgsl-dev, liblpsolve55-dev, libbamtools-dev, libbam-dev, libhts-dev, libncurses5-dev, asciidoctor dpkg-deb: building package 'sbuild-build-depends-augustus-dummy' in '/<>/resolver-TrwVby/apt_archive/sbuild-build-depends-augustus-dummy.deb'. Ign:1 copy:/<>/resolver-TrwVby/apt_archive ./ InRelease Get:2 copy:/<>/resolver-TrwVby/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-TrwVby/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-TrwVby/apt_archive ./ Sources [276 B] Get:5 copy:/<>/resolver-TrwVby/apt_archive ./ Packages [600 B] Fetched 2995 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install augustus build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base icu-devtools intltool-debian libamd2 libarchive-zip-perl libbam-dev libbamtools-dev libbamtools2.4.0 libblas-dev libblas3 libboost-iostreams-dev libboost-iostreams1.65-dev libboost-iostreams1.65.1 libboost-regex1.65-dev libboost-regex1.65.1 libboost1.65-dev libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcxsparse3 libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libhts-dev libhts2 libicu-dev libicu59 libklu1 liblapack-dev liblapack3 libldl2 liblpsolve55-dev liblzma-dev libmagic-mgc libmagic1 libmetis5 libncurses5-dev libpipeline1 librbio2 libruby2.3 libsigsegv2 libspqr2 libsqlite3-dev libsuitesparse-dev libsuitesparseconfig4 libtimedate-perl libtinfo-dev libtool libumfpack5 libxml2 libyaml-0-2 m4 man-db po-debconf rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration tabix zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libbamtools-doc liblapack-doc libboost1.65-doc libboost-atomic1.65-dev libboost-chrono1.65-dev libboost-container1.65-dev libboost-context1.65-dev libboost-coroutine1.65-dev libboost-date-time1.65-dev libboost-exception1.65-dev libboost-fiber1.65-dev libboost-filesystem1.65-dev libboost-graph1.65-dev libboost-graph-parallel1.65-dev libboost-locale1.65-dev libboost-log1.65-dev libboost-math1.65-dev libboost-mpi1.65-dev libboost-mpi-python1.65-dev libboost-numpy1.65-dev libboost-program-options1.65-dev libboost-python1.65-dev libboost-random1.65-dev libboost-serialization1.65-dev libboost-signals1.65-dev libboost-stacktrace1.65-dev libboost-system1.65-dev libboost-test1.65-dev libboost-thread1.65-dev libboost-timer1.65-dev libboost-type-erasure1.65-dev libboost-wave1.65-dev libboost1.65-tools-dev libmpfrc++-dev libntl-dev gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html icu-doc liblzma-doc ncurses-doc sqlite3-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl ri ruby-dev bundler Recommended packages: curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl zip fonts-lato libjs-jquery The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: asciidoctor autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base icu-devtools intltool-debian libamd2 libarchive-zip-perl libbam-dev libbamtools-dev libbamtools2.4.0 libblas-dev libblas3 libboost-iostreams-dev libboost-iostreams1.65-dev libboost-iostreams1.65.1 libboost-regex1.65-dev libboost-regex1.65.1 libboost1.65-dev libbsd0 libbtf1 libcamd2 libccolamd2 libcholmod3 libcolamd2 libcroco3 libcxsparse3 libfile-stripnondeterminism-perl libgfortran4 libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libhts-dev libhts2 libicu-dev libicu59 libklu1 liblapack-dev liblapack3 libldl2 liblpsolve55-dev liblzma-dev libmagic-mgc libmagic1 libmetis5 libncurses5-dev libpipeline1 librbio2 libruby2.3 libsigsegv2 libspqr2 libsqlite3-dev libsuitesparse-dev libsuitesparseconfig4 libtimedate-perl libtinfo-dev libtool libumfpack5 libxml2 libyaml-0-2 m4 man-db po-debconf rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration sbuild-build-depends-augustus-dummy tabix zlib1g-dev 0 upgraded, 85 newly installed, 1 to remove and 0 not upgraded. Need to get 48.7 MB of archives. After this operation, 315 MB of additional disk space will be used. Get:1 copy:/<>/resolver-TrwVby/apt_archive ./ sbuild-build-depends-augustus-dummy 0.invalid.0 [928 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main ppc64el groff-base ppc64el 1.22.3-9 [1361 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main ppc64el libbsd0 ppc64el 0.8.6-1 [46.3 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main ppc64el bsdmainutils ppc64el 9.0.12+nmu1ubuntu1 [179 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpipeline1 ppc64el 1.4.2-1 [23.6 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main ppc64el man-db ppc64el 2.7.6.1-2 [890 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmagic-mgc ppc64el 1:5.32-1 [184 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmagic1 ppc64el 1:5.32-1 [76.6 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main ppc64el file ppc64el 1:5.32-1 [22.7 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main ppc64el libglib2.0-0 ppc64el 2.54.1-1ubuntu1 [1160 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libicu59 ppc64el 59.1-3ubuntu1 [8110 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-5ubuntu1 [621 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main ppc64el libyaml-0-2 ppc64el 0.1.7-2ubuntu3 [46.3 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main ppc64el gettext-base ppc64el 0.19.8.1-4ubuntu1 [49.5 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main ppc64el rubygems-integration all 1.11 [4994 B] Get:16 http://ftpmaster.internal/ubuntu bionic/main ppc64el rake all 12.0.0-1 [44.2 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main ppc64el ruby-did-you-mean all 1.0.0-2 [8390 B] Get:18 http://ftpmaster.internal/ubuntu bionic/main ppc64el ruby-minitest all 5.10.3-1 [38.6 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main ppc64el ruby-net-telnet all 0.1.1-2 [12.6 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main ppc64el ruby-power-assert all 0.3.0-1 [7952 B] Get:21 http://ftpmaster.internal/ubuntu bionic/main ppc64el ruby-test-unit all 3.2.5-1 [61.1 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main ppc64el libruby2.3 ppc64el 2.3.3-1ubuntu1 [2990 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main ppc64el ruby2.3 ppc64el 2.3.3-1ubuntu1 [41.2 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main ppc64el ruby ppc64el 1:2.3.3 [5636 B] Get:25 http://ftpmaster.internal/ubuntu bionic/universe ppc64el asciidoctor all 1.5.5-1 [168 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsigsegv2 ppc64el 2.11-1 [13.3 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main ppc64el m4 ppc64el 1.4.18-1 [202 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main ppc64el autoconf all 2.69-11 [322 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main ppc64el autotools-dev all 20161112.1 [39.5 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main ppc64el automake all 1:1.15.1-3ubuntu1 [509 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main ppc64el autopoint all 0.19.8.1-4ubuntu1 [412 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtool all 2.4.6-2 [194 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main ppc64el dh-autoreconf all 14 [15.5 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main ppc64el libarchive-zip-perl all 1.59-1 [84.0 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfile-stripnondeterminism-perl all 0.038-1 [13.3 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtimedate-perl all 2.3000-2 [37.5 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main ppc64el dh-strip-nondeterminism all 0.038-1 [5026 B] Get:38 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcroco3 ppc64el 0.6.12-1 [74.4 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main ppc64el gettext ppc64el 0.19.8.1-4ubuntu1 [1142 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main ppc64el intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main ppc64el po-debconf all 1.0.20 [232 kB] Get:42 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el debhelper all 10.10.4ubuntu1 [877 kB] Get:43 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el icu-devtools ppc64el 59.1-3ubuntu1 [201 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsuitesparseconfig4 ppc64el 1:4.5.5-1 [9506 B] Get:45 http://ftpmaster.internal/ubuntu bionic/main ppc64el libamd2 ppc64el 1:4.5.5-1 [27.9 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libbam-dev ppc64el 0.1.19-2 [131 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libbamtools2.4.0 ppc64el 2.4.1+dfsg-2 [196 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-0ubuntu2 [178 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libbamtools-dev ppc64el 2.4.1+dfsg-2 [250 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main ppc64el libblas3 ppc64el 3.7.1-3ubuntu2 [96.0 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main ppc64el libblas-dev ppc64el 3.7.1-3ubuntu2 [99.7 kB] Get:52 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libboost1.65-dev ppc64el 1.65.1+dfsg-0ubuntu2 [7218 kB] Get:53 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libboost-regex1.65.1 ppc64el 1.65.1+dfsg-0ubuntu2 [264 kB] Get:54 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libicu-dev ppc64el 59.1-3ubuntu1 [9287 kB] Get:55 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libboost-regex1.65-dev ppc64el 1.65.1+dfsg-0ubuntu2 [319 kB] Get:56 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libboost-iostreams1.65.1 ppc64el 1.65.1+dfsg-0ubuntu2 [30.5 kB] Get:57 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libboost-iostreams1.65-dev ppc64el 1.65.1+dfsg-0ubuntu2 [38.8 kB] Get:58 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el libboost-iostreams-dev ppc64el 1.65.1.0ubuntu1 [2916 B] Get:59 http://ftpmaster.internal/ubuntu bionic/main ppc64el libbtf1 ppc64el 1:4.5.5-1 [12.9 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcamd2 ppc64el 1:4.5.5-1 [24.6 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main ppc64el libccolamd2 ppc64el 1:4.5.5-1 [25.6 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcolamd2 ppc64el 1:4.5.5-1 [16.5 kB] Get:63 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libgfortran4 ppc64el 7.2.0-12ubuntu1 [293 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblapack3 ppc64el 3.7.1-3ubuntu2 [1495 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmetis5 ppc64el 5.1.0.dfsg-5 [156 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcholmod3 ppc64el 1:4.5.5-1 [354 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcxsparse3 ppc64el 1:4.5.5-1 [72.8 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgslcblas0 ppc64el 2.4+dfsg-6 [100 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgsl23 ppc64el 2.4+dfsg-6 [885 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgsl-dev ppc64el 2.4+dfsg-6 [1180 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libhts2 ppc64el 1.5-1 [284 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblzma-dev ppc64el 5.2.2-1.3 [157 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/universe ppc64el tabix ppc64el 1.5-1 [308 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libhts-dev ppc64el 1.5-1 [407 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main ppc64el libklu1 ppc64el 1:4.5.5-1 [80.4 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblapack-dev ppc64el 3.7.1-3ubuntu2 [1540 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main ppc64el libldl2 ppc64el 1:4.5.5-1 [12.1 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main ppc64el libumfpack5 ppc64el 1:4.5.5-1 [243 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main ppc64el librbio2 ppc64el 1:4.5.5-1 [27.7 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main ppc64el libspqr2 ppc64el 1:4.5.5-1 [67.3 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsuitesparse-dev ppc64el 1:4.5.5-1 [1058 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblpsolve55-dev ppc64el 5.5.0.15-4build1 [380 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtinfo-dev ppc64el 6.0+20160625-1ubuntu1 [89.1 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main ppc64el libncurses5-dev ppc64el 6.0+20160625-1ubuntu1 [195 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsqlite3-dev ppc64el 3.19.3-3 [584 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 48.7 MB in 4s (9762 kB/s) (Reading database ... 12558 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package groff-base. (Reading database ... 12549 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_ppc64el.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:ppc64el. Preparing to unpack .../01-libbsd0_0.8.6-1_ppc64el.deb ... Unpacking libbsd0:ppc64el (0.8.6-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.12+nmu1ubuntu1_ppc64el.deb ... Unpacking bsdmainutils (9.0.12+nmu1ubuntu1) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../03-libpipeline1_1.4.2-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.4.2-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.7.6.1-2_ppc64el.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libmagic-mgc. 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Unpacking zlib1g-dev:ppc64el (1:1.2.11.dfsg-0ubuntu2) ... Selecting previously unselected package libbamtools-dev. Preparing to unpack .../47-libbamtools-dev_2.4.1+dfsg-2_ppc64el.deb ... Unpacking libbamtools-dev (2.4.1+dfsg-2) ... Selecting previously unselected package libblas3:ppc64el. Preparing to unpack .../48-libblas3_3.7.1-3ubuntu2_ppc64el.deb ... Unpacking libblas3:ppc64el (3.7.1-3ubuntu2) ... Selecting previously unselected package libblas-dev:ppc64el. Preparing to unpack .../49-libblas-dev_3.7.1-3ubuntu2_ppc64el.deb ... Unpacking libblas-dev:ppc64el (3.7.1-3ubuntu2) ... Selecting previously unselected package libboost1.65-dev:ppc64el. Preparing to unpack .../50-libboost1.65-dev_1.65.1+dfsg-0ubuntu2_ppc64el.deb ... Unpacking libboost1.65-dev:ppc64el (1.65.1+dfsg-0ubuntu2) ... Selecting previously unselected package libboost-regex1.65.1:ppc64el. Preparing to unpack .../51-libboost-regex1.65.1_1.65.1+dfsg-0ubuntu2_ppc64el.deb ... 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Unpacking libgfortran4:ppc64el (7.2.0-12ubuntu1) ... Selecting previously unselected package liblapack3:ppc64el. Preparing to unpack .../62-liblapack3_3.7.1-3ubuntu2_ppc64el.deb ... Unpacking liblapack3:ppc64el (3.7.1-3ubuntu2) ... Selecting previously unselected package libmetis5:ppc64el. Preparing to unpack .../63-libmetis5_5.1.0.dfsg-5_ppc64el.deb ... Unpacking libmetis5:ppc64el (5.1.0.dfsg-5) ... Selecting previously unselected package libcholmod3:ppc64el. Preparing to unpack .../64-libcholmod3_1%3a4.5.5-1_ppc64el.deb ... Unpacking libcholmod3:ppc64el (1:4.5.5-1) ... Selecting previously unselected package libcxsparse3:ppc64el. Preparing to unpack .../65-libcxsparse3_1%3a4.5.5-1_ppc64el.deb ... Unpacking libcxsparse3:ppc64el (1:4.5.5-1) ... Selecting previously unselected package libgslcblas0:ppc64el. Preparing to unpack .../66-libgslcblas0_2.4+dfsg-6_ppc64el.deb ... Unpacking libgslcblas0:ppc64el (2.4+dfsg-6) ... Selecting previously unselected package libgsl23:ppc64el. 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Unpacking libklu1:ppc64el (1:4.5.5-1) ... Selecting previously unselected package liblapack-dev:ppc64el. Preparing to unpack .../74-liblapack-dev_3.7.1-3ubuntu2_ppc64el.deb ... Unpacking liblapack-dev:ppc64el (3.7.1-3ubuntu2) ... Selecting previously unselected package libldl2:ppc64el. Preparing to unpack .../75-libldl2_1%3a4.5.5-1_ppc64el.deb ... Unpacking libldl2:ppc64el (1:4.5.5-1) ... Selecting previously unselected package libumfpack5:ppc64el. Preparing to unpack .../76-libumfpack5_1%3a4.5.5-1_ppc64el.deb ... Unpacking libumfpack5:ppc64el (1:4.5.5-1) ... Selecting previously unselected package librbio2:ppc64el. Preparing to unpack .../77-librbio2_1%3a4.5.5-1_ppc64el.deb ... Unpacking librbio2:ppc64el (1:4.5.5-1) ... Selecting previously unselected package libspqr2:ppc64el. Preparing to unpack .../78-libspqr2_1%3a4.5.5-1_ppc64el.deb ... Unpacking libspqr2:ppc64el (1:4.5.5-1) ... Selecting previously unselected package libsuitesparse-dev:ppc64el. 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Preparing to unpack .../84-sbuild-build-depends-augustus-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-augustus-dummy (0.invalid.0) ... Setting up libbtf1:ppc64el (1:4.5.5-1) ... Setting up libldl2:ppc64el (1:4.5.5-1) ... Setting up libcxsparse3:ppc64el (1:4.5.5-1) ... Setting up libboost-iostreams1.65.1:ppc64el (1.65.1+dfsg-0ubuntu2) ... Setting up libarchive-zip-perl (1.59-1) ... Setting up libgfortran4:ppc64el (7.2.0-12ubuntu1) ... Setting up libsqlite3-dev:ppc64el (3.19.3-3) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:ppc64el (2.11-1) ... Setting up libbamtools2.4.0 (2.4.1+dfsg-2) ... Setting up libicu59:ppc64el (59.1-3ubuntu1) ... Setting up groff-base (1.22.3-9) ... Setting up libglib2.0-0:ppc64el (2.54.1-1ubuntu1) ... No schema files found: doing nothing. Setting up libtinfo-dev:ppc64el (6.0+20160625-1ubuntu1) ... Setting up libsuitesparseconfig4:ppc64el (1:4.5.5-1) ... Setting up gettext-base (0.19.8.1-4ubuntu1) ... Setting up libpipeline1:ppc64el (1.4.2-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:ppc64el (0.8.6-1) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-5ubuntu1) ... Setting up libmagic-mgc (1:5.32-1) ... Setting up libmagic1:ppc64el (1:5.32-1) ... Setting up libcroco3:ppc64el (0.6.12-1) ... Setting up libncurses5-dev:ppc64el (6.0+20160625-1ubuntu1) ... Setting up libamd2:ppc64el (1:4.5.5-1) ... Setting up ruby-did-you-mean (1.0.0-2) ... Setting up libyaml-0-2:ppc64el (0.1.7-2ubuntu3) ... Setting up libblas3:ppc64el (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Processing triggers for libc-bin (2.26-0ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up libmetis5:ppc64el (5.1.0.dfsg-5) ... Setting up ruby-net-telnet (0.1.1-2) ... Setting up libbam-dev (0.1.19-2) ... Setting up libcolamd2:ppc64el (1:4.5.5-1) ... Setting up rubygems-integration (1.11) ... Setting up libccolamd2:ppc64el (1:4.5.5-1) ... Setting up tabix (1.5-1) ... Setting up icu-devtools (59.1-3ubuntu1) ... Setting up liblzma-dev:ppc64el (5.2.2-1.3) ... Setting up bsdmainutils (9.0.12+nmu1ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up ruby-minitest (5.10.3-1) ... Setting up libgslcblas0:ppc64el (2.4+dfsg-6) ... Setting up libboost1.65-dev:ppc64el (1.65.1+dfsg-0ubuntu2) ... Setting up libhts2:ppc64el (1.5-1) ... Setting up autopoint (0.19.8.1-4ubuntu1) ... Setting up ruby-power-assert (0.3.0-1) ... Setting up libboost-regex1.65.1:ppc64el (1.65.1+dfsg-0ubuntu2) ... Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.038-1) ... Setting up libgsl23:ppc64el (2.4+dfsg-6) ... Setting up gettext (0.19.8.1-4ubuntu1) ... Setting up libblas-dev:ppc64el (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so to provide /usr/lib/powerpc64le-linux-gnu/libblas.so (libblas.so-powerpc64le-linux-gnu) in auto mode Setting up libgsl-dev (2.4+dfsg-6) ... Setting up libhts-dev:ppc64el (1.5-1) ... Setting up liblapack3:ppc64el (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up librbio2:ppc64el (1:4.5.5-1) ... Setting up libcamd2:ppc64el (1:4.5.5-1) ... Setting up libbamtools-dev (2.4.1+dfsg-2) ... Setting up libklu1:ppc64el (1:4.5.5-1) ... Setting up autoconf (2.69-11) ... Setting up libicu-dev (59.1-3ubuntu1) ... Setting up file (1:5.32-1) ... Setting up libcholmod3:ppc64el (1:4.5.5-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-regex1.65-dev:ppc64el (1.65.1+dfsg-0ubuntu2) ... Setting up libspqr2:ppc64el (1:4.5.5-1) ... Setting up liblapack-dev:ppc64el (3.7.1-3ubuntu2) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so (liblapack.so-powerpc64le-linux-gnu) in auto mode Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up libumfpack5:ppc64el (1:4.5.5-1) ... Setting up libboost-iostreams1.65-dev:ppc64el (1.65.1+dfsg-0ubuntu2) ... Setting up libboost-iostreams-dev:ppc64el (1.65.1.0ubuntu1) ... Setting up libsuitesparse-dev:ppc64el (1:4.5.5-1) ... Setting up liblpsolve55-dev (5.5.0.15-4build1) ... Setting up dh-autoreconf (14) ... Setting up rake (12.0.0-1) ... Setting up dh-strip-nondeterminism (0.038-1) ... Setting up libruby2.3:ppc64el (2.3.3-1ubuntu1) ... Setting up debhelper (10.10.4ubuntu1) ... Setting up ruby2.3 (2.3.3-1ubuntu1) ... Setting up ruby (1:2.3.3) ... Setting up ruby-test-unit (3.2.5-1) ... Setting up asciidoctor (1.5.5-1) ... Setting up sbuild-build-depends-augustus-dummy (0.invalid.0) ... (Reading database ... 30250 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.26-0ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-97-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.29.1-6ubuntu1 dpkg-dev_1.19.0.4ubuntu1 g++-7_7.2.0-12ubuntu1 gcc-7_7.2.0-12ubuntu1 libc6-dev_2.26-0ubuntu2 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 linux-libc-dev_4.13.0-16.19 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.5.1 apt-transport-https_1.5.1 asciidoctor_1.5.5-1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu1 autotools-dev_20161112.1 base-files_10ubuntu1 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.29.1-6ubuntu1 binutils-common_2.29.1-6ubuntu1 binutils-powerpc64le-linux-gnu_2.29.1-6ubuntu1 bsdmainutils_9.0.12+nmu1ubuntu1 bsdutils_1:2.30.1-0ubuntu4 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3ubuntu4 cpp_4:7.2.0-1ubuntu1 cpp-7_7.2.0-12ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.63 debhelper_10.10.4ubuntu1 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.6-1 dmsetup_2:1.02.137-2ubuntu3 dpkg_1.19.0.4ubuntu1 dpkg-dev_1.19.0.4ubuntu1 e2fslibs_1.43.5-1 e2fsprogs_1.43.5-1 fakeroot_1.21-1ubuntu2 fdisk_2.30.1-0ubuntu4 file_1:5.32-1 findutils_4.6.0+git+20170729-2 g++_4:7.2.0-1ubuntu1 g++-7_7.2.0-12ubuntu1 gcc_4:7.2.0-1ubuntu1 gcc-7_7.2.0-12ubuntu1 gcc-7-base_7.2.0-12ubuntu1 gettext_0.19.8.1-4ubuntu1 gettext-base_0.19.8.1-4ubuntu1 gnupg_2.1.15-1ubuntu8 gnupg-agent_2.1.15-1ubuntu8 gpgv_2.1.15-1ubuntu8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 icu-devtools_59.1-3ubuntu1 init_1.49ubuntu1 init-system-helpers_1.49ubuntu1 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libamd2_1:4.5.5-1 libapparmor1_2.11.0-2ubuntu17 libapt-pkg5.0_1.5.1 libarchive-zip-perl_1.59-1 libasan4_7.2.0-12ubuntu1 libasn1-8-heimdal_7.4.0.dfsg.1-2 libassuan0_2.4.3-3 libatomic1_7.2.0-12ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.7.7-1ubuntu2 libaudit1_1:2.7.7-1ubuntu2 libbam-dev_0.1.19-2 libbamtools-dev_2.4.1+dfsg-2 libbamtools2.4.0_2.4.1+dfsg-2 libbinutils_2.29.1-6ubuntu1 libblas-dev_3.7.1-3ubuntu2 libblas3_3.7.1-3ubuntu2 libblkid1_2.30.1-0ubuntu4 libboost-iostreams-dev_1.65.1.0ubuntu1 libboost-iostreams1.65-dev_1.65.1+dfsg-0ubuntu2 libboost-iostreams1.65.1_1.65.1+dfsg-0ubuntu2 libboost-regex1.65-dev_1.65.1+dfsg-0ubuntu2 libboost-regex1.65.1_1.65.1+dfsg-0ubuntu2 libboost1.65-dev_1.65.1+dfsg-0ubuntu2 libbsd0_0.8.6-1 libbtf1_1:4.5.5-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.26-0ubuntu2 libc-dev-bin_2.26-0ubuntu2 libc6_2.26-0ubuntu2 libc6-dev_2.26-0ubuntu2 libcamd2_1:4.5.5-1 libcap-ng0_0.7.7-3build1 libcap2_1:2.25-1.1 libcc1-0_7.2.0-12ubuntu1 libccolamd2_1:4.5.5-1 libcholmod3_1:4.5.5-1 libcolamd2_1:4.5.5-1 libcomerr2_1.43.5-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4ubuntu1 libcurl3-gnutls_7.55.1-1ubuntu2.1 libcxsparse3_1:4.5.5-1 libdb5.3_5.3.28-13.1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu3 libdpkg-perl_1.19.0.4ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.30.1-0ubuntu4 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-7-dev_7.2.0-12ubuntu1 libgcc1_1:7.2.0-12ubuntu1 libgcrypt20_1.7.8-2ubuntu1 libgdbm3_1.8.3-14 libgfortran4_7.2.0-12ubuntu1 libglib2.0-0_2.54.1-1ubuntu1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.8-6ubuntu3 libgomp1_7.2.0-12ubuntu1 libgpg-error0_1.27-3 libgsl-dev_2.4+dfsg-6 libgsl23_2.4+dfsg-6 libgslcblas0_2.4+dfsg-6 libgssapi-krb5-2_1.15.1-2 libgssapi3-heimdal_7.4.0.dfsg.1-2 libhcrypto4-heimdal_7.4.0.dfsg.1-2 libheimbase1-heimdal_7.4.0.dfsg.1-2 libheimntlm0-heimdal_7.4.0.dfsg.1-2 libhogweed4_3.3-2 libhts-dev_1.5-1 libhts2_1.5-1 libhx509-5-heimdal_7.4.0.dfsg.1-2 libicu-dev_59.1-3ubuntu1 libicu59_59.1-3ubuntu1 libidn11_1.33-2 libidn2-0_2.0.2-5 libip4tc0_1.6.1-2ubuntu1 libisl15_0.18-1 libitm1_7.2.0-12ubuntu1 libk5crypto3_1.15.1-2 libkeyutils1_1.5.9-9ubuntu1 libklu1_1:4.5.5-1 libkmod2_24-1ubuntu2 libkrb5-26-heimdal_7.4.0.dfsg.1-2 libkrb5-3_1.15.1-2 libkrb5support0_1.15.1-2 libksba8_1.3.5-2 liblapack-dev_3.7.1-3ubuntu2 liblapack3_3.7.1-3ubuntu2 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 libldl2_1:4.5.5-1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblpsolve55-dev_5.5.0.15-4build1 liblsan0_7.2.0-12ubuntu1 liblz4-1_0.0~r131-2ubuntu2 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmetis5_5.1.0.dfsg-5 libmount1_2.30.1-0ubuntu4 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libncurses5_6.0+20160625-1ubuntu1 libncurses5-dev_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-2 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-5ubuntu3 libperl5.26_5.26.0-8ubuntu1 libpipeline1_1.4.2-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.18.0-2 librbio2_1:4.5.5-1 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.4.0.dfsg.1-2 librtmp1_2.4+20151223.gitfa8646d.1-1 libruby2.3_2.3.3-1ubuntu1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu1 libseccomp2_2.3.1-2.1ubuntu3 libselinux1_2.7-1 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.30.1-0ubuntu4 libspqr2_1:4.5.5-1 libsqlite3-0_3.19.3-3 libsqlite3-dev_3.19.3-3 libss2_1.43.5-1 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-7-dev_7.2.0-12ubuntu1 libstdc++6_7.2.0-12ubuntu1 libsuitesparse-dev_1:4.5.5-1 libsuitesparseconfig4_1:4.5.5-1 libsystemd0_234-2ubuntu12 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20160625-1ubuntu1 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libtsan0_7.2.0-12ubuntu1 libubsan0_7.2.0-12ubuntu1 libudev1_234-2ubuntu12 libumfpack5_1:4.5.5-1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.30.1-0ubuntu4 libwind0-heimdal_7.4.0.dfsg.1-2 libxml2_2.9.4+dfsg1-5ubuntu1 libyaml-0-2_0.1.7-2ubuntu3 linux-libc-dev_4.13.0-16.19 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu4 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.30.1-0ubuntu4 multiarch-support_2.26-0ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu4 patch_2.7.5-1build1 perl_5.26.0-8ubuntu1 perl-base_5.26.0-8ubuntu1 perl-modules-5.26_5.26.0-8ubuntu1 pinentry-curses_1.0.0-2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 rake_12.0.0-1 readline-common_7.0-0ubuntu2 ruby_1:2.3.3 ruby-did-you-mean_1.0.0-2 ruby-minitest_5.10.3-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_0.3.0-1 ruby-test-unit_3.2.5-1 ruby2.3_2.3.3-1ubuntu1 rubygems-integration_1.11 sbuild-build-depends-augustus-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-2ubuntu12 systemd-sysv_234-2ubuntu12 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tabix_1.5-1 tar_1.29b-2 tzdata_2017b-2 ubuntu-keyring_2016.10.27 util-linux_2.30.1-0ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Oct 26 19:02:03 2017 UTC gpgv: using RSA key gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./augustus_3.3+dfsg-2build1.dsc dpkg-source: info: extracting augustus in augustus-3.3+dfsg dpkg-source: info: unpacking augustus_3.3+dfsg.orig.tar.xz dpkg-source: info: unpacking augustus_3.3+dfsg-2build1.debian.tar.xz dpkg-source: info: applying search_config_path dpkg-source: info: applying set_installdir dpkg-source: info: applying keep_cflags dpkg-source: info: applying buildflags.patch dpkg-source: info: applying spelling.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-13625606 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-13625606 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-13625606 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package augustus dpkg-buildpackage: info: source version 3.3+dfsg-2build1 dpkg-buildpackage: info: source distribution bionic dpkg-source --before-build augustus-3.3+dfsg dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean --parallel debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/augustus-3.3+dfsg' /usr/bin/make -C auxprogs/bam2hints clean make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/bam2hints' rm -f bam2hints.o bam2hints ../../bin/bam2hints make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/bam2hints' /usr/bin/make -C auxprogs/homGeneMapping clean make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/homGeneMapping' (cd src; make clean; cd ../bin; rm -f homGeneMapping; cd ../../../bin; rm -f homGeneMapping) make[3]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/homGeneMapping/src' rm -f homGeneMapping gene.o genome.o make[3]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/homGeneMapping/src' /bin/sh: 1: cd: can't cd to ../../../bin make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/homGeneMapping' /usr/bin/make -C auxprogs/joingenes clean make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/joingenes' rm -rf *o joingenes; rm -rf ../../bin/joingenes make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/joingenes' /usr/bin/make -C auxprogs/aln2wig clean make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/aln2wig' rm -f aln2wig aln2wig.o; rm -f ../../bin/aln2wig make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/aln2wig' /usr/bin/make -C auxprogs/bam2wig clean make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/bam2wig' rm -f bam2wig bam2wig.o make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/bam2wig' /usr/bin/make -C auxprogs/checkTargetSortedness clean make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/checkTargetSortedness' rm -f *.o checkTargetSortedness make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/checkTargetSortedness' /usr/bin/make -C auxprogs/compileSpliceCands clean make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/compileSpliceCands' rm -f compileSpliceCands compileSpliceCands.o ../../bin/compileSpliceCands list.o make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/compileSpliceCands' /usr/bin/make -C auxprogs/filterBam clean make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/filterBam' (cd src; make clean; cd ../bin; rm -f filterBam; cd ../../../bin; rm -f filterBam) make[3]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/filterBam/src' rm -f *~ filterBam.o MatePairs.o getReferenceName.o initOptions.o SingleAlignment.o printElapsedTime.o sumMandIOperations.o sumDandIOperations.o PairednessCoverage.o make[3]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/filterBam/src' /bin/sh: 1: cd: can't cd to ../../../bin make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/filterBam' rm -rf bin make[1]: Leaving directory '/<>/augustus-3.3+dfsg' dh_autoreconf_clean dh_clean debian/rules build-arch dh build-arch --parallel dh_update_autotools_config -a -O--parallel dh_autoreconf -a -O--parallel dh_auto_configure -a -O--parallel debian/rules override_dh_auto_build make[1]: Entering directory '/<>/augustus-3.3+dfsg' mkdir -p bin /usr/bin/make -C auxprogs/aln2wig make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/aln2wig' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-sign-compare -ansi -pedantic -O2 -ggdb -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c aln2wig.c gcc -Wall -Wno-sign-compare -ansi -pedantic -O2 -ggdb -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o aln2wig aln2wig.o; cp aln2wig ../../bin make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/aln2wig' /usr/bin/make -C auxprogs/bam2hints make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/bam2hints' g++ -Wall -O2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c bam2hints.cc -o bam2hints.o -I/usr/include/bamtools g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o bam2hints bam2hints.o -lbamtools -lz cp bam2hints ../../bin make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/bam2hints' /usr/bin/make -C auxprogs/bam2wig make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/bam2wig' cc -Wall -O2 -I/usr/include/samtools/ -I. -I/usr/include/htslib/ -I/usr/include/tabix/ -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c bam2wig.c -o bam2wig.o -I/usr/include/samtools/ -I. -I/usr/include/htslib/ -I/usr/include/tabix/ cc -Wall -O2 -I/usr/include/samtools/ -I. -I/usr/include/htslib/ -I/usr/include/tabix/ -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now bam2wig.o -o bam2wig /usr/lib/libbam.a -lhts -lcurses -lm -lz -lpthread make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/bam2wig' /usr/bin/make -C auxprogs/checkTargetSortedness make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/checkTargetSortedness' cc -g -Wall -O2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -c checkTargetSortedness.c -o checkTargetSortedness.o -I/usr/include/samtools -I. cc -g -Wall -O2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now checkTargetSortedness.o -o checkTargetSortedness -lbam -lcurses -lm -lz -lpthread make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/checkTargetSortedness' /usr/bin/make -C auxprogs/compileSpliceCands make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/compileSpliceCands' cc -Wall -pedantic -ansi -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c compileSpliceCands.c compileSpliceCands.c: In function ‘parseList’: compileSpliceCands.c:344:31: warning: ‘left’ may be used uninitialized in this function [-Wmaybe-uninitialized] findPossibleSpliceSites(left->name,actualChromosome,left->startPos-maxSpliceSiteDiff,left->endPos+maxSpliceSiteDiff,right->startPos-maxSpliceSiteDiff,right->startPos+maxSpliceSiteDiff,left->strand,right->strand); ^~~~ compileSpliceCands.c: In function ‘main’: compileSpliceCands.c:563:3: warning: ‘chromosomeLength’ may be used uninitialized in this function [-Wmaybe-uninitialized] parseList(&L,actualChromosome,chromosomeLength,oldname,maxSpliceSiteDiff,threshold,maxIntronLength); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o list.o list.c cc -o compileSpliceCands compileSpliceCands.o list.o -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now; make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/compileSpliceCands' /usr/bin/make -C auxprogs/filterBam make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/filterBam' (cd src;make) make[3]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/filterBam/src' g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c filterBam.cc -o filterBam.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/MatePairs.cc -o MatePairs.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/getReferenceName.cc -o getReferenceName.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/initOptions.cc -o initOptions.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/SingleAlignment.cc -o SingleAlignment.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/printElapsedTime.cc -o printElapsedTime.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/sumMandIOperations.cc -o sumMandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/sumDandIOperations.cc -o sumDandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/PairednessCoverage.cc -o PairednessCoverage.o -I/usr/include/bamtools -Iheaders -I./bamtools g++ -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -std=c++0x -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now filterBam.o MatePairs.o getReferenceName.o initOptions.o SingleAlignment.o printElapsedTime.o sumMandIOperations.o sumDandIOperations.o PairednessCoverage.o -o filterBam -lbamtools -lz filterBam compiled with BAMTOOLS=/usr/include/bamtools cp filterBam ../../../bin/filterBam make[3]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/filterBam/src' make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/filterBam' /usr/bin/make -C auxprogs/homGeneMapping/src make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/homGeneMapping/src' g++ -c -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -o gene.o gene.cc -I../include g++ -c -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -o genome.o genome.cc -I../include g++ -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -o homGeneMapping main.cc gene.o genome.o -I../include -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cp homGeneMapping ../../../bin/homGeneMapping make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/homGeneMapping/src' /usr/bin/make -C auxprogs/joingenes make[2]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/joingenes' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x joingenes.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x jg_transcript.cpp g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x jg_ios.cpp g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x joingenes.o jg_transcript.o jg_ios.o -o joingenes -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now cp joingenes ../../bin/ make[2]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/joingenes' dh_auto_build make -j4 make[2]: Entering directory '/<>/augustus-3.3+dfsg' mkdir -p bin cd src && make make[3]: Entering directory '/<>/augustus-3.3+dfsg/src' g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o genbank.o genbank.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o properties.o properties.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o pp_profile.o pp_profile.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o pp_hitseq.o pp_hitseq.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o pp_scoring.o pp_scoring.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o statemodel.o statemodel.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o namgene.o namgene.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o types.o types.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o gene.o gene.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o evaluation.o evaluation.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o motif.o motif.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o geneticcode.o geneticcode.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o hints.o hints.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o extrinsicinfo.o extrinsicinfo.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o projectio.o projectio.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o intronmodel.o intronmodel.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o exonmodel.o exonmodel.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o igenicmodel.o igenicmodel.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o utrmodel.o utrmodel.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o merkmal.o merkmal.cc -I../include utrmodel.cc: In member function ‘Double UtrModel::notEndPartEmiProb(int, int, int, Feature*) const’: utrmodel.cc:1468:29: warning: enum constant in boolean context [-Wint-in-bool-context] if ((utype == utr3init || utr3single || utype == rutr5term || rutr5single) && (part->start < beginOfBioExon && part->end == endOfBioExon) ){ ^~~~~~~~~~ utrmodel.cc:1468:65: warning: enum constant in boolean context [-Wint-in-bool-context] if ((utype == utr3init || utr3single || utype == rutr5term || rutr5single) && (part->start < beginOfBioExon && part->end == endOfBioExon) ){ ^~~~~~~~~~~ utrmodel.cc:1472:30: warning: enum constant in boolean context [-Wint-in-bool-context] if ((utype == rutr3init || rutr3single || utype == utr5term || utr5single) && (part->start == beginOfBioExon && part->end > endOfBioExon) ){ ^~~~~~~~~~~ utrmodel.cc:1472:66: warning: enum constant in boolean context [-Wint-in-bool-context] if ((utype == rutr3init || rutr3single || utype == utr5term || utr5single) && (part->start == beginOfBioExon && part->end > endOfBioExon) ){ ^~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o vitmatrix.o vitmatrix.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o lldouble.o lldouble.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o mea.o mea.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o graph.o graph.cc -I../include merkmal.cc: In static member function ‘static void CRF::onlineLargeMarginTraining(Parameters*, std::vector, FeatureCollection&)’: merkmal.cc:338:6: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 4 [-Wformat-overflow=] void CRF::onlineLargeMarginTraining(Parameters* parameters, vector trainGenes, FeatureCollection &extrinsicFeatures){ ^~~ merkmal.cc:338:6: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:862:0, from /usr/include/c++/7/cstdio:42, from /usr/include/c++/7/fstream:41, from ../include/projectio.hh:23, from ../include/geneticcode.hh:18, from ../include/motif.hh:21, from ../include/gene.hh:14, from ../include/extrinsicinfo.hh:25, from ../include/merkmal.hh:17, from merkmal.cc:13: /usr/include/powerpc64le-linux-gnu/bits/stdio2.h:34:43: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 4 __bos (__s), __fmt, __va_arg_pack ()); ^ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o meaPath.o meaPath.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o exoncand.o exoncand.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o randseqaccess.o randseqaccess.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o fasta.o fasta.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o ncmodel.o ncmodel.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o commontrain.o commontrain.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o igenictrain.o igenictrain.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o introntrain.o introntrain.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o exontrain.o exontrain.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o utrtrain.o utrtrain.cc -I../include g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o dummy.o dummy.cc -I../include g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o prepareAlign pp_prepare_align.cc g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o pp_fastBlockSearcher.o pp_fastBlockSearcher.cc -I../include echo "-Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT" > cxxflags g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o dummy.o -I../include -lboost_iostreams g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o fastBlockSearch fastBlockSearch.cc pp_fastBlockSearcher.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include -lboost_iostreams cp prepareAlign ../bin/ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O3 -fdebug-prefix-map=/<>/augustus-3.3+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o etraining etraining.cc commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o -I../include -lboost_iostreams cp fastBlockSearch ../bin/ cp augustus ../bin/ cp etraining ../bin/ make[3]: Leaving directory '/<>/augustus-3.3+dfsg/src' cd auxprogs && make make[3]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs' cd bam2hints; make; make[4]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/bam2hints' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[4]: 'bam2hints' is up to date. make[4]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/bam2hints' cd compileSpliceCands; make; make[4]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/compileSpliceCands' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[4]: 'compileSpliceCands' is up to date. make[4]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/compileSpliceCands' cd filterBam; make; make[4]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/filterBam' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. (cd src;make) make[5]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/filterBam/src' filterBam compiled with BAMTOOLS=/usr/include/bamtools cp filterBam ../../../bin/filterBam make[5]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/filterBam/src' make[4]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/filterBam' cd homGeneMapping; make; make[4]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/homGeneMapping' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. (cd src; make) make[5]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/homGeneMapping/src' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/homGeneMapping/src' make[4]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/homGeneMapping' cd joingenes; make; make[4]: Entering directory '/<>/augustus-3.3+dfsg/auxprogs/joingenes' make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs/joingenes' make[3]: Leaving directory '/<>/augustus-3.3+dfsg/auxprogs' make[2]: Leaving directory '/<>/augustus-3.3+dfsg' asciidoctor -a docdate='' -b manpage debian/mansrc/*adoc make[1]: Leaving directory '/<>/augustus-3.3+dfsg' dh_auto_test -a -O--parallel create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --parallel dh_testroot -a -O--parallel dh_prep -a -O--parallel debian/rules override_dh_auto_install make[1]: Entering directory '/<>/augustus-3.3+dfsg' mkdir -p debian/augustus/usr/bin install bin/* debian/augustus/usr/bin install auxprogs/checkTargetSortedness/checkTargetSortedness \ debian/augustus/usr/bin install auxprogs/bam2wig/bam2wig \ debian/augustus/usr/bin install auxprogs/compileSpliceCands/compileSpliceCands \ debian/augustus/usr/bin install auxprogs/homGeneMapping/src/homGeneMapping \ debian/augustus/usr/bin install auxprogs/joingenes/joingenes \ debian/augustus/usr/bin mkdir -p debian/augustus/usr/share/augustus cp -r scripts debian/augustus/usr/share/augustus chmod -R -x debian/augustus/usr/share/augustus/scripts/* rm -rf debian/augustus/usr/share/augustus/scripts/*.patch \ debian/augustus/usr/share/augustus/scripts/aln2wig chmod +x debian/augustus/usr/share/augustus/scripts/checkUTR \ debian/augustus/usr/share/augustus/scripts/*.pl* mkdir -p debian/augustus-doc/usr/share/doc/augustus cp README* debian/augustus-doc/usr/share/doc/augustus cp docs/*.txt debian/augustus-doc/usr/share/doc/augustus cp -r docs/tutorial \ debian/augustus-doc/usr/share/doc/augustus mkdir -p debian/augustus-data/usr/share/augustus cp -r config debian/augustus-data/usr/share/augustus find debian/augustus-data/usr/share/augustus \ -type f -exec chmod -x {} \; make[1]: Leaving directory '/<>/augustus-3.3+dfsg' dh_installdocs -a -O--parallel debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>/augustus-3.3+dfsg' dh_installchangelogs -k HISTORY.TXT make[1]: Leaving directory '/<>/augustus-3.3+dfsg' dh_installman -a -O--parallel dh_perl -a -O--parallel dh_link -a -O--parallel dh_strip_nondeterminism -a -O--parallel debian/rules override_dh_compress make[1]: Entering directory '/<>/augustus-3.3+dfsg' dh_compress -Xtutorial make[1]: Leaving directory '/<>/augustus-3.3+dfsg' dh_fixperms -a -O--parallel dh_missing -a -O--parallel dh_strip -a -O--parallel dh_makeshlibs -a -O--parallel dh_shlibdeps -a -O--parallel dh_installdeb -a -O--parallel dh_gencontrol -a -O--parallel dpkg-gencontrol: warning: package augustus: unused substitution variable ${perl:Depends} dpkg-gencontrol: warning: package augustus: unused substitution variable ${perl:Depends} dh_md5sums -a -O--parallel dh_builddeb -a -O--parallel INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing augustus-dbgsym (in debian/.debhelper/augustus/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing augustus (in debian/augustus); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/augustus/dbgsym-root/DEBIAN/control, package augustus-dbgsym, directory debian/.debhelper/augustus/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package augustus-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'augustus-dbgsym' in 'debian/.debhelper/scratch-space/build-augustus/augustus-dbgsym_3.3+dfsg-2build1_ppc64el.deb'. pkgstripfiles: processing control file: debian/augustus/DEBIAN/control, package augustus, directory debian/augustus .. removing usr/share/doc/augustus/changelog.gz pkgstripfiles: Running PNG optimization (using 4 cpus) for package augustus ... pkgstripfiles: No PNG files. dpkg-deb: building package 'augustus' in '../augustus_3.3+dfsg-2build1_ppc64el.deb'. Renaming augustus-dbgsym_3.3+dfsg-2build1_ppc64el.deb to augustus-dbgsym_3.3+dfsg-2build1_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../augustus_3.3+dfsg-2build1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build augustus-3.3+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20171026-1930 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ augustus_3.3+dfsg-2build1_ppc64el.changes: ------------------------------------------ Format: 1.8 Date: Thu, 26 Oct 2017 17:09:26 +0000 Source: augustus Binary: augustus augustus-data augustus-doc Architecture: ppc64el Version: 3.3+dfsg-2build1 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: augustus - gene prediction in eukaryotic genomes augustus-data - data files for AUGUSTUS augustus-doc - documentation files for AUGUSTUS Changes: augustus (3.3+dfsg-2build1) bionic; urgency=medium . * No-change rebuild for boost soname change. Checksums-Sha1: d6b98973693f6c0c38135c925de3ab9ae8102d1e 15832596 augustus-dbgsym_3.3+dfsg-2build1_ppc64el.ddeb 4da0f495f6c3142590729ffc97df26f678afb1a5 7980 augustus_3.3+dfsg-2build1_ppc64el.buildinfo 189a37e3e0c4baa72faa3aa0bc0b5c17d0028134 1196564 augustus_3.3+dfsg-2build1_ppc64el.deb Checksums-Sha256: ee7b6b9c5eaa0e5f72352832174f110eee8ea8470deb07daa94a87f9588680c2 15832596 augustus-dbgsym_3.3+dfsg-2build1_ppc64el.ddeb cf9022ff212d946ef0aaccfbd6b0f67266c00df3743301249261527c9412c5cb 7980 augustus_3.3+dfsg-2build1_ppc64el.buildinfo fd2a7f1a5cd822cb4ed1cd0f4185f8b527d078ddca2db0c8e44d822599bb5bf7 1196564 augustus_3.3+dfsg-2build1_ppc64el.deb Files: 20917e5d5b32ed191c21542b73b5ce4b 15832596 debug optional augustus-dbgsym_3.3+dfsg-2build1_ppc64el.ddeb d33fe35b2a15a966df16a8b3b14e3706 7980 science optional augustus_3.3+dfsg-2build1_ppc64el.buildinfo ee24669998a75e533efddce2564cb440 1196564 science optional augustus_3.3+dfsg-2build1_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ augustus_3.3+dfsg-2build1_ppc64el.deb ------------------------------------- new debian package, version 2.0. size 1196564 bytes: control archive=4352 bytes. 1342 bytes, 23 lines control 8773 bytes, 117 lines md5sums Package: augustus Version: 3.3+dfsg-2build1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 6237 Depends: libbamtools2.4.0, libboost-iostreams1.65.1, libc6 (>= 2.17), libgcc1 (>= 1:4.2), libstdc++6 (>= 6), zlib1g (>= 1:1.2.3.3), augustus-data Built-Using: samtools-legacy (= 0.1.19-2) Section: science Priority: optional Homepage: http://bioinf.uni-greifswald.de/augustus/ Description: gene prediction in eukaryotic genomes AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences that is based on a generalized hidden Markov model (HMM), a probabilistic model of a sequence and its gene structure. After learning gene structures from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new sequence and annotates it with the regions of identified genes. External hints, e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide and improve the gene finding process. The result is the set of most likely gene structures that comply with all given user constraints, if such gene structures exist. AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts to train custom models using annotated genomes. drwxr-xr-x root/root 0 2017-10-26 17:09 ./ drwxr-xr-x root/root 0 2017-10-26 17:09 ./usr/ drwxr-xr-x root/root 0 2017-10-26 17:09 ./usr/bin/ -rwxr-xr-x root/root 67512 2017-10-26 17:09 ./usr/bin/aln2wig -rwxr-xr-x root/root 1842192 2017-10-26 17:09 ./usr/bin/augustus -rwxr-xr-x root/root 68576 2017-10-26 17:09 ./usr/bin/bam2hints -rwxr-xr-x root/root 199880 2017-10-26 17:09 ./usr/bin/bam2wig -rwxr-xr-x root/root 199880 2017-10-26 17:09 ./usr/bin/checkTargetSortedness -rwxr-xr-x root/root 67608 2017-10-26 17:09 ./usr/bin/compileSpliceCands -rwxr-xr-x root/root 2038816 2017-10-26 17:09 ./usr/bin/etraining -rwxr-xr-x root/root 399648 2017-10-26 17:09 ./usr/bin/fastBlockSearch -rwxr-xr-x root/root 264416 2017-10-26 17:09 ./usr/bin/filterBam -rwxr-xr-x root/root 199304 2017-10-26 17:09 ./usr/bin/homGeneMapping -rwxr-xr-x root/root 198848 2017-10-26 17:09 ./usr/bin/joingenes -rwxr-xr-x root/root 67800 2017-10-26 17:09 ./usr/bin/prepareAlign drwxr-xr-x root/root 0 2017-10-26 17:09 ./usr/share/ drwxr-xr-x root/root 0 2017-10-26 17:09 ./usr/share/augustus/ drwxr-xr-x root/root 0 2017-10-26 17:09 ./usr/share/augustus/scripts/ -rw-r--r-- root/root 12539 2017-10-26 17:09 ./usr/share/augustus/scripts/README.autoAug -rw-r--r-- root/root 12247 2017-10-26 17:09 ./usr/share/augustus/scripts/SplicedAlignment.pm -rwxr-xr-x root/root 3022 2017-10-26 17:09 ./usr/share/augustus/scripts/augustus2browser.pl -rwxr-xr-x root/root 389 2017-10-26 17:09 ./usr/share/augustus/scripts/augustus2gbrowse.pl -rwxr-xr-x root/root 48984 2017-10-26 17:09 ./usr/share/augustus/scripts/autoAug.pl -rwxr-xr-x root/root 20477 2017-10-26 17:09 ./usr/share/augustus/scripts/autoAugPred.pl -rwxr-xr-x root/root 44147 2017-10-26 17:09 ./usr/share/augustus/scripts/autoAugTrain.pl -rw-r--r-- root/root 195 2017-10-26 17:09 ./usr/share/augustus/scripts/autoRun.pathInfo -rwxr-xr-x root/root 3370 2017-10-26 17:09 ./usr/share/augustus/scripts/bedgraph2wig.pl -rwxr-xr-x root/root 4442 2017-10-26 17:09 ./usr/share/augustus/scripts/blat2gbrowse.pl -rwxr-xr-x root/root 30278 2017-10-26 17:09 ./usr/share/augustus/scripts/blat2hints.pl -rwxr-xr-x root/root 11310 2017-10-26 17:09 ./usr/share/augustus/scripts/block2prfl.pl -rwxr-xr-x root/root 2233 2017-10-26 17:09 ./usr/share/augustus/scripts/cegma2gff.pl -rwxr-xr-x root/root 3843 2017-10-26 17:09 ./usr/share/augustus/scripts/checkParamArchive.pl -rwxr-xr-x root/root 1151 2017-10-26 17:09 ./usr/share/augustus/scripts/checkUTR -rwxr-xr-x root/root 535 2017-10-26 17:09 ./usr/share/augustus/scripts/cleanDOSfasta.pl -rwxr-xr-x root/root 7558 2017-10-26 17:09 ./usr/share/augustus/scripts/clusterAndSplitGenes.pl -rwxr-xr-x root/root 4879 2017-10-26 17:09 ./usr/share/augustus/scripts/createAugustusJoblist.pl -rwxr-xr-x root/root 3233 2017-10-26 17:09 ./usr/share/augustus/scripts/del_from_prfl.pl -rwxr-xr-x root/root 9675 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+------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 770896 Build-Time: 95 Distribution: bionic-proposed Host Architecture: ppc64el Install-Time: 20 Job: augustus_3.3+dfsg-2build1.dsc Machine Architecture: ppc64el Package: augustus Package-Time: 122 Source-Version: 3.3+dfsg-2build1 Space: 770896 Status: successful Version: 3.3+dfsg-2build1 -------------------------------------------------------------------------------- Finished at 20171026-1930 Build needed 00:02:02, 770896k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13625606 Scanning for processes to kill in build PACKAGEBUILD-13625606 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13625606 Stopping target for build PACKAGEBUILD-13625606 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-13625606 Removing build PACKAGEBUILD-13625606