https://launchpad.net/ubuntu/+source/art-nextgen-simulation-tools/20160605+dfsg-4build2/+build/22599298 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-019 4.15.0-163-generic #171-Ubuntu SMP Fri Nov 5 11:53:41 UTC 2021 ppc64le Buildd toolchain package versions: launchpad-buildd_204~508~ubuntu18.04.1 python3-lpbuildd_204~508~ubuntu18.04.1 sbuild_0.75.0-1ubuntu1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu16.04.1 bzr_2.7.0+bzr6622-10 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu18.04.1 git_1:2.17.1-1ubuntu0.9 dpkg-dev_1.19.0.5ubuntu2.3 python-debian_0.1.32 python3-debian_0.1.32. Syncing the system clock with the buildd NTP service... 7 Dec 17:26:17 ntpdate[2206]: adjust time server 10.211.37.1 offset 0.012509 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-22599298 --image-type chroot /home/buildd/filecache-default/104362a8a1d4d9793492e39ad0c0e733056a927b Creating target for build PACKAGEBUILD-22599298 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-22599298 Starting target for build PACKAGEBUILD-22599298 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-22599298 'deb http://ftpmaster.internal/ubuntu jammy main universe' 'deb http://ftpmaster.internal/ubuntu jammy-security main universe' 'deb http://ftpmaster.internal/ubuntu jammy-updates main universe' 'deb http://ftpmaster.internal/ubuntu jammy-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-22599298 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-22599298 Updating target for build PACKAGEBUILD-22599298 Get:1 http://ftpmaster.internal/ubuntu jammy InRelease [270 kB] Get:2 http://ftpmaster.internal/ubuntu jammy-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu jammy-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu jammy-proposed InRelease [121 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main ppc64el Packages [1356 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main Translation-en [511 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/universe ppc64el Packages [13.0 MB] Get:8 http://ftpmaster.internal/ubuntu jammy/universe Translation-en [5567 kB] Get:9 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el Packages [140 kB] Get:10 http://ftpmaster.internal/ubuntu jammy-proposed/main Translation-en [51.2 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/universe ppc64el Packages [608 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/universe Translation-en [312 kB] Fetched 22.1 MB in 11s (1977 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be REMOVED: libsemanage1* The following NEW packages will be installed: libsemanage2 libsepol2 libssl3 The following packages will be upgraded: apt base-files bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils bzip2 ca-certificates cpp-11 dash debconf debianutils dpkg dpkg-dev e2fsprogs g++-11 gcc-11 gcc-11-base gpg gpg-agent gpgconf gpgv grep libapparmor1 libapt-pkg6.0 libasan6 libatomic1 libattr1 libbinutils libblkid1 libbz2-1.0 libcc1-0 libcom-err2 libcrypt-dev libcrypt1 libcryptsetup12 libctf-nobfd0 libctf0 libdpkg-perl libext2fs2 libgcc-11-dev libgcc-s1 libgcrypt20 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn2-0 libip4tc2 libisl23 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpc3 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsmartcols1 libsqlite3-0 libss2 libstdc++-11-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev lockfile-progs login logsave lto-disabled-list make mount ncurses-base ncurses-bin openssl passwd pkgbinarymangler sed sensible-utils systemd systemd-sysv systemd-timesyncd tzdata usrmerge util-linux 106 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 82.2 MB of archives. After this operation, 330 MB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu jammy/main ppc64el debconf all 1.5.79 [126 kB] Get:2 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpam0g ppc64el 1.4.0-10ubuntu2 [69.4 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcrypt-dev ppc64el 1:4.4.26-1 [142 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcrypt1 ppc64el 1:4.4.26-1 [108 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main ppc64el base-files ppc64el 12ubuntu2 [63.4 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main ppc64el debianutils ppc64el 5.5-1ubuntu1 [107 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main ppc64el bash ppc64el 5.1-5ubuntu1 [933 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main ppc64el bsdutils ppc64el 1:2.37.2-4ubuntu1 [86.7 kB] Get:9 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgpg-error0 ppc64el 1.42-3 [84.4 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgcrypt20 ppc64el 1.9.4-3ubuntu2 [697 kB] Get:11 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el bzip2 ppc64el 1.0.8-5 [37.4 kB] Get:12 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libbz2-1.0 ppc64el 1.0.8-5 [49.5 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcc1-0 ppc64el 11.2.0-12ubuntu1 [48.1 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main ppc64el gcc-11-base ppc64el 11.2.0-12ubuntu1 [20.7 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgcc-s1 ppc64el 11.2.0-12ubuntu1 [34.7 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgomp1 ppc64el 11.2.0-12ubuntu1 [130 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main ppc64el libitm1 ppc64el 11.2.0-12ubuntu1 [33.1 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main ppc64el libatomic1 ppc64el 11.2.0-12ubuntu1 [10.7 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main ppc64el libasan6 ppc64el 11.2.0-12ubuntu1 [2301 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main ppc64el liblsan0 ppc64el 11.2.0-12ubuntu1 [997 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main ppc64el libtsan0 ppc64el 11.2.0-12ubuntu1 [2285 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main ppc64el libubsan1 ppc64el 11.2.0-12ubuntu1 [947 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main ppc64el libquadmath0 ppc64el 11.2.0-12ubuntu1 [166 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main ppc64el g++-11 ppc64el 11.2.0-12ubuntu1 [10.2 MB] Get:25 http://ftpmaster.internal/ubuntu jammy/main ppc64el libstdc++-11-dev ppc64el 11.2.0-12ubuntu1 [2219 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgcc-11-dev ppc64el 11.2.0-12ubuntu1 [1490 kB] Get:27 http://ftpmaster.internal/ubuntu jammy/main ppc64el gcc-11 ppc64el 11.2.0-12ubuntu1 [17.7 MB] Get:28 http://ftpmaster.internal/ubuntu jammy/main ppc64el cpp-11 ppc64el 11.2.0-12ubuntu1 [8812 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main ppc64el libstdc++6 ppc64el 11.2.0-12ubuntu1 [760 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main ppc64el libisl23 ppc64el 0.24-2 [835 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main ppc64el libmpc3 ppc64el 1.2.1-1 [52.9 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main ppc64el libzstd1 ppc64el 1.4.8+dfsg-3 [364 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main ppc64el libctf0 ppc64el 2.37-10ubuntu1 [109 kB] Get:34 http://ftpmaster.internal/ubuntu jammy/main ppc64el libctf-nobfd0 ppc64el 2.37-10ubuntu1 [108 kB] Get:35 http://ftpmaster.internal/ubuntu jammy/main ppc64el libbinutils ppc64el 2.37-10ubuntu1 [670 kB] Get:36 http://ftpmaster.internal/ubuntu jammy/main ppc64el binutils-common ppc64el 2.37-10ubuntu1 [213 kB] Get:37 http://ftpmaster.internal/ubuntu jammy/main ppc64el binutils ppc64el 2.37-10ubuntu1 [3170 B] Get:38 http://ftpmaster.internal/ubuntu jammy/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.37-10ubuntu1 [2430 kB] Get:39 http://ftpmaster.internal/ubuntu jammy/main ppc64el libssl3 ppc64el 3.0.0-1ubuntu1 [2147 kB] Get:40 http://ftpmaster.internal/ubuntu jammy/main ppc64el libblkid1 ppc64el 2.37.2-4ubuntu1 [132 kB] Get:41 http://ftpmaster.internal/ubuntu jammy/main ppc64el libuuid1 ppc64el 2.37.2-4ubuntu1 [27.1 kB] Get:42 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libcryptsetup12 ppc64el 2:2.4.2-1ubuntu3 [304 kB] Get:43 http://ftpmaster.internal/ubuntu jammy/main ppc64el libidn2-0 ppc64el 2.3.2-2 [70.4 kB] Get:44 http://ftpmaster.internal/ubuntu jammy/main ppc64el libp11-kit0 ppc64el 0.24.0-6 [264 kB] Get:45 http://ftpmaster.internal/ubuntu jammy/main ppc64el libtasn1-6 ppc64el 4.18.0-4 [55.8 kB] Get:46 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgnutls30 ppc64el 3.7.2-2ubuntu1 [1021 kB] Get:47 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el systemd-timesyncd ppc64el 249.5-2ubuntu1 [32.1 kB] Get:48 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el systemd-sysv ppc64el 249.5-2ubuntu1 [10.5 kB] Get:49 http://ftpmaster.internal/ubuntu jammy/main ppc64el libapparmor1 ppc64el 3.0.3-0ubuntu4 [44.0 kB] Get:50 http://ftpmaster.internal/ubuntu jammy/main ppc64el libip4tc2 ppc64el 1.8.7-1ubuntu4 [24.0 kB] Get:51 http://ftpmaster.internal/ubuntu jammy/main ppc64el libkmod2 ppc64el 28-1ubuntu5 [59.3 kB] Get:52 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpcre2-8-0 ppc64el 10.39-3 [249 kB] Get:53 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libselinux1 ppc64el 3.3-1build1 [94.4 kB] Get:54 http://ftpmaster.internal/ubuntu jammy/main ppc64el libmount1 ppc64el 2.37.2-4ubuntu1 [148 kB] Get:55 http://ftpmaster.internal/ubuntu jammy/main ppc64el libseccomp2 ppc64el 2.5.2-2ubuntu2 [60.1 kB] Get:56 http://ftpmaster.internal/ubuntu jammy/main ppc64el login ppc64el 1:4.8.1-2ubuntu1 [190 kB] Get:57 http://ftpmaster.internal/ubuntu jammy/main ppc64el util-linux ppc64el 2.37.2-4ubuntu1 [1134 kB] Get:58 http://ftpmaster.internal/ubuntu jammy/main ppc64el mount ppc64el 2.37.2-4ubuntu1 [121 kB] Get:59 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el systemd ppc64el 249.5-2ubuntu1 [5281 kB] Get:60 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libsystemd0 ppc64el 249.5-2ubuntu1 [400 kB] Get:61 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libudev1 ppc64el 249.5-2ubuntu1 [98.3 kB] Get:62 http://ftpmaster.internal/ubuntu jammy/main ppc64el libapt-pkg6.0 ppc64el 2.3.13 [1031 kB] Get:63 http://ftpmaster.internal/ubuntu jammy/main ppc64el dpkg ppc64el 1.20.9ubuntu3 [1323 kB] Get:64 http://ftpmaster.internal/ubuntu jammy/main ppc64el dash ppc64el 0.5.11+git20210903+057cd650a4ed-3 [111 kB] Get:65 http://ftpmaster.internal/ubuntu jammy/main ppc64el grep ppc64el 3.7-1 [167 kB] Get:66 http://ftpmaster.internal/ubuntu jammy/main ppc64el libncurses6 ppc64el 6.3-1 [145 kB] Get:67 http://ftpmaster.internal/ubuntu jammy/main ppc64el libncursesw6 ppc64el 6.3-1 [183 kB] Get:68 http://ftpmaster.internal/ubuntu jammy/main ppc64el libtinfo6 ppc64el 6.3-1 [129 kB] Get:69 http://ftpmaster.internal/ubuntu jammy/main ppc64el ncurses-bin ppc64el 6.3-1 [196 kB] Get:70 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el sed ppc64el 4.8-1 [204 kB] Get:71 http://ftpmaster.internal/ubuntu jammy/main ppc64el ncurses-base all 6.3-1 [19.9 kB] Get:72 http://ftpmaster.internal/ubuntu jammy/main ppc64el gpgv ppc64el 2.2.27-2ubuntu1 [176 kB] Get:73 http://ftpmaster.internal/ubuntu jammy/main ppc64el apt ppc64el 2.3.13 [1435 kB] Get:74 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsepol2 ppc64el 3.3-1 [370 kB] Get:75 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libsemanage-common all 3.3-1build1 [10.0 kB] Get:76 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libsemanage2 ppc64el 3.3-1build1 [113 kB] Get:77 http://ftpmaster.internal/ubuntu jammy/main ppc64el passwd ppc64el 1:4.8.1-2ubuntu1 [792 kB] Get:78 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpam-modules-bin ppc64el 1.4.0-10ubuntu2 [45.0 kB] Get:79 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpam-modules ppc64el 1.4.0-10ubuntu2 [326 kB] Get:80 http://ftpmaster.internal/ubuntu jammy/main ppc64el logsave ppc64el 1.46.4-1ubuntu1 [11.5 kB] Get:81 http://ftpmaster.internal/ubuntu jammy/main ppc64el libext2fs2 ppc64el 1.46.4-1ubuntu1 [255 kB] Get:82 http://ftpmaster.internal/ubuntu jammy/main ppc64el e2fsprogs ppc64el 1.46.4-1ubuntu1 [650 kB] Get:83 http://ftpmaster.internal/ubuntu jammy/main ppc64el libattr1 ppc64el 1:2.5.1-1 [14.3 kB] Get:84 http://ftpmaster.internal/ubuntu jammy/main ppc64el libcom-err2 ppc64el 1.46.4-1ubuntu1 [10.7 kB] Get:85 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libk5crypto3 ppc64el 1.19.2-0ubuntu1 [117 kB] Get:86 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libkrb5support0 ppc64el 1.19.2-0ubuntu1 [37.8 kB] Get:87 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libkrb5-3 ppc64el 1.19.2-0ubuntu1 [436 kB] Get:88 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el libgssapi-krb5-2 ppc64el 1.19.2-0ubuntu1 [184 kB] Get:89 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpam-runtime all 1.4.0-10ubuntu2 [40.2 kB] Get:90 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsmartcols1 ppc64el 2.37.2-4ubuntu1 [63.0 kB] Get:91 http://ftpmaster.internal/ubuntu jammy/main ppc64el libss2 ppc64el 1.46.4-1ubuntu1 [13.7 kB] Get:92 http://ftpmaster.internal/ubuntu jammy/main ppc64el sensible-utils all 0.0.17 [20.1 kB] Get:93 http://ftpmaster.internal/ubuntu jammy/main ppc64el usrmerge all 25ubuntu2 [54.7 kB] Get:94 http://ftpmaster.internal/ubuntu jammy/main ppc64el openssl ppc64el 3.0.0-1ubuntu1 [1191 kB] Get:95 http://ftpmaster.internal/ubuntu jammy/main ppc64el ca-certificates all 20211016 [148 kB] Get:96 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsqlite3-0 ppc64el 3.36.0-2 [744 kB] Get:97 http://ftpmaster.internal/ubuntu jammy/main ppc64el tzdata all 2021e-1ubuntu1 [343 kB] Get:98 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgdbm6 ppc64el 1.22-1 [43.1 kB] Get:99 http://ftpmaster.internal/ubuntu jammy/main ppc64el dpkg-dev all 1.20.9ubuntu3 [933 kB] Get:100 http://ftpmaster.internal/ubuntu jammy/main ppc64el libdpkg-perl all 1.20.9ubuntu3 [235 kB] Get:101 http://ftpmaster.internal/ubuntu jammy/main ppc64el make ppc64el 4.3-4ubuntu2 [211 kB] Get:102 http://ftpmaster.internal/ubuntu jammy/main ppc64el lto-disabled-list all 17 [12.1 kB] Get:103 http://ftpmaster.internal/ubuntu jammy/main ppc64el gpg ppc64el 2.2.27-2ubuntu1 [661 kB] Get:104 http://ftpmaster.internal/ubuntu jammy/main ppc64el gpgconf ppc64el 2.2.27-2ubuntu1 [104 kB] Get:105 http://ftpmaster.internal/ubuntu jammy/main ppc64el gpg-agent ppc64el 2.2.27-2ubuntu1 [247 kB] Get:106 http://ftpmaster.internal/ubuntu jammy/main ppc64el libgdbm-compat4 ppc64el 1.22-1 [6864 B] Get:107 http://ftpmaster.internal/ubuntu jammy-proposed/main ppc64el linux-libc-dev ppc64el 5.15.0-13.13 [1265 kB] Get:108 http://ftpmaster.internal/ubuntu jammy/main ppc64el lockfile-progs ppc64el 0.1.19 [10.2 kB] Get:109 http://ftpmaster.internal/ubuntu jammy/main ppc64el pkgbinarymangler all 149 [32.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.2 MB in 3s (27.6 MB/s) (Reading database ... 13185 files and directories currently installed.) Preparing to unpack .../debconf_1.5.79_all.deb ... Unpacking debconf (1.5.79) over (1.5.77) ... Setting up debconf (1.5.79) ... (Reading database ... 13184 files and directories currently installed.) Preparing to unpack .../libpam0g_1.4.0-10ubuntu2_ppc64el.deb ... Unpacking libpam0g:ppc64el (1.4.0-10ubuntu2) over (1.3.1-5ubuntu11) ... Setting up libpam0g:ppc64el (1.4.0-10ubuntu2) ... Checking for services that may need to be restarted...Checking init scripts... Nothing to restart. (Reading database ... 13184 files and directories currently installed.) Preparing to unpack .../libcrypt-dev_1%3a4.4.26-1_ppc64el.deb ... Unpacking libcrypt-dev:ppc64el (1:4.4.26-1) over (1:4.4.18-4ubuntu2) ... Preparing to unpack .../libcrypt1_1%3a4.4.26-1_ppc64el.deb ... Unpacking libcrypt1:ppc64el (1:4.4.26-1) over (1:4.4.18-4ubuntu2) ... Setting up libcrypt1:ppc64el (1:4.4.26-1) ... (Reading database ... 13184 files and directories currently installed.) 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Unpacking bsdutils (1:2.37.2-4ubuntu1) over (1:2.36.1-8ubuntu1) ... Setting up bsdutils (1:2.37.2-4ubuntu1) ... (Reading database ... 13188 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.42-3_ppc64el.deb ... Unpacking libgpg-error0:ppc64el (1.42-3) over (1.38-2build2) ... Setting up libgpg-error0:ppc64el (1.42-3) ... (Reading database ... 13188 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.9.4-3ubuntu2_ppc64el.deb ... Unpacking libgcrypt20:ppc64el (1.9.4-3ubuntu2) over (1.8.7-5ubuntu2) ... Setting up libgcrypt20:ppc64el (1.9.4-3ubuntu2) ... (Reading database ... 13188 files and directories currently installed.) Preparing to unpack .../bzip2_1.0.8-5_ppc64el.deb ... Unpacking bzip2 (1.0.8-5) over (1.0.8-4ubuntu4) ... Preparing to unpack .../libbz2-1.0_1.0.8-5_ppc64el.deb ... Unpacking libbz2-1.0:ppc64el (1.0.8-5) over (1.0.8-4ubuntu4) ... Setting up libbz2-1.0:ppc64el (1.0.8-5) ... 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Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up make (4.3-4ubuntu2) ... Setting up libncurses6:ppc64el (6.3-1) ... Setting up libquadmath0:ppc64el (11.2.0-12ubuntu1) ... Setting up libmpc3:ppc64el (1.2.1-1) ... Setting up lockfile-progs (0.1.19) ... Setting up libatomic1:ppc64el (11.2.0-12ubuntu1) ... Setting up usrmerge (25ubuntu2) ... Setting up libss2:ppc64el (1.46.4-1ubuntu1) ... Setting up libncursesw6:ppc64el (6.3-1) ... Setting up libdpkg-perl (1.20.9ubuntu3) ... Setting up logsave (1.46.4-1ubuntu1) ... Setting up libubsan1:ppc64el (11.2.0-12ubuntu1) ... Setting up mount (2.37.2-4ubuntu1) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:ppc64el (1:4.4.26-1) ... Setting up gpgconf (2.2.27-2ubuntu1) ... Setting up libcryptsetup12:ppc64el (2:2.4.2-1ubuntu3) ... Setting up libbinutils:ppc64el (2.37-10ubuntu1) ... Setting up libisl23:ppc64el (0.24-2) ... Setting up openssl (3.0.0-1ubuntu1) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libcc1-0:ppc64el (11.2.0-12ubuntu1) ... Setting up gpg (2.2.27-2ubuntu1) ... Setting up liblsan0:ppc64el (11.2.0-12ubuntu1) ... Setting up libitm1:ppc64el (11.2.0-12ubuntu1) ... Setting up libkmod2:ppc64el (28-1ubuntu5) ... Setting up libgdbm6:ppc64el (1.22-1) ... Setting up libtsan0:ppc64el (11.2.0-12ubuntu1) ... Setting up libctf0:ppc64el (2.37-10ubuntu1) ... Setting up cpp-11 (11.2.0-12ubuntu1) ... Setting up gpg-agent (2.2.27-2ubuntu1) ... Setting up pkgbinarymangler (149) ... Setting up e2fsprogs (1.46.4-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... Setting up systemd (249.5-2ubuntu1) ... Installing new version of config file /etc/systemd/networkd.conf ... Installing new version of config file /etc/systemd/resolved.conf ... Initializing machine ID from random generator. Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 7 added, 8 removed; done. Setting up systemd-timesyncd (249.5-2ubuntu1) ... Setting up libgdbm-compat4:ppc64el (1.22-1) ... Setting up libgcc-11-dev:ppc64el (11.2.0-12ubuntu1) ... Setting up binutils-powerpc64le-linux-gnu (2.37-10ubuntu1) ... Setting up systemd-sysv (249.5-2ubuntu1) ... Setting up binutils (2.37-10ubuntu1) ... Setting up dpkg-dev (1.20.9ubuntu3) ... Setting up libstdc++-11-dev:ppc64el (11.2.0-12ubuntu1) ... Setting up gcc-11 (11.2.0-12ubuntu1) ... Setting up g++-11 (11.2.0-12ubuntu1) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-22599298 ppc64el jammy-proposed -c chroot:build-PACKAGEBUILD-22599298 --arch=ppc64el --dist=jammy-proposed --nolog art-nextgen-simulation-tools_20160605+dfsg-4build2.dsc Initiating build PACKAGEBUILD-22599298 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.15.0-163-generic #171-Ubuntu SMP Fri Nov 5 11:53:41 UTC 2021 ppc64le sbuild (Debian sbuild) 0.75.0 (21 Mar 2018) on bos02-ppc64el-019.buildd +==============================================================================================+ | art-nextgen-simulation-tools 20160605+dfsg-4build2 (ppc64el) Tue, 07 Dec 2021 17:26:55 +0000 | +==============================================================================================+ Package: art-nextgen-simulation-tools Version: 20160605+dfsg-4build2 Source Version: 20160605+dfsg-4build2 Distribution: jammy-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-22599298/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- art-nextgen-simulation-tools_20160605+dfsg-4build2.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/art-nextgen-simulation-tools-VQ2VlQ/art-nextgen-simulation-tools-20160605+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/art-nextgen-simulation-tools-VQ2VlQ' with '<>' +------------------------------------------------------------------------------+ | Install build-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-LFHXXY/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-LFHXXY/apt_archive ./ InRelease Get:2 copy:/<>/resolver-LFHXXY/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-LFHXXY/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-LFHXXY/apt_archive ./ Sources [349 B] Get:5 copy:/<>/resolver-LFHXXY/apt_archive ./ Packages [433 B] Fetched 1739 B in 0s (89.7 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: systemd-timesyncd Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 654 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-LFHXXY/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [654 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 654 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13379 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any all) +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), libgsl-dev Filtered Build-Depends: debhelper-compat (= 12), libgsl-dev dpkg-deb: building package 'sbuild-build-depends-art-nextgen-simulation-tools-dummy' in '/<>/resolver-LFHXXY/apt_archive/sbuild-build-depends-art-nextgen-simulation-tools-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-art-nextgen-simulation-tools-dummy sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-LFHXXY/apt_archive ./ InRelease Get:2 copy:/<>/resolver-LFHXXY/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-LFHXXY/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-LFHXXY/apt_archive ./ Sources [515 B] Get:5 copy:/<>/resolver-LFHXXY/apt_archive ./ Packages [594 B] Fetched 2072 B in 0s (188 kB/s) Reading package lists... Reading package lists... Install art-nextgen-simulation-tools build dependencies (apt-based resolver) ---------------------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: systemd-timesyncd Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libgsl-dev libgsl27 libgslcblas0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libgsl-dev libgsl27 libgslcblas0 libicu67 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db po-debconf sbuild-build-depends-art-nextgen-simulation-tools-dummy 0 upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 22.1 MB of archives. After this operation, 85.5 MB of additional disk space will be used. Get:1 copy:/<>/resolver-LFHXXY/apt_archive ./ sbuild-build-depends-art-nextgen-simulation-tools-dummy 0.invalid.0 [680 B] Get:2 http://ftpmaster.internal/ubuntu jammy/main ppc64el bsdextrautils ppc64el 2.37.2-4ubuntu1 [77.8 kB] Get:3 http://ftpmaster.internal/ubuntu jammy/main ppc64el libuchardet0 ppc64el 0.0.7-1build1 [80.3 kB] Get:4 http://ftpmaster.internal/ubuntu jammy/main ppc64el groff-base ppc64el 1.22.4-7 [1033 kB] Get:5 http://ftpmaster.internal/ubuntu jammy/main ppc64el libpipeline1 ppc64el 1.5.4-1 [26.8 kB] Get:6 http://ftpmaster.internal/ubuntu jammy/main ppc64el man-db ppc64el 2.9.4-2build1 [1231 kB] Get:7 http://ftpmaster.internal/ubuntu jammy/main ppc64el libelf1 ppc64el 0.186-1 [62.7 kB] Get:8 http://ftpmaster.internal/ubuntu jammy/main ppc64el libicu67 ppc64el 67.1-7ubuntu1 [10.4 MB] Get:9 http://ftpmaster.internal/ubuntu jammy/main ppc64el libxml2 ppc64el 2.9.12+dfsg-5 [838 kB] Get:10 http://ftpmaster.internal/ubuntu jammy/main ppc64el libmagic-mgc ppc64el 1:5.41-2 [257 kB] Get:11 http://ftpmaster.internal/ubuntu jammy/main ppc64el libmagic1 ppc64el 1:5.41-2 [103 kB] Get:12 http://ftpmaster.internal/ubuntu jammy/main ppc64el file ppc64el 1:5.41-2 [22.6 kB] Get:13 http://ftpmaster.internal/ubuntu jammy/main ppc64el gettext-base ppc64el 0.21-4ubuntu3 [40.5 kB] Get:14 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsigsegv2 ppc64el 2.13-1ubuntu2 [15.3 kB] Get:15 http://ftpmaster.internal/ubuntu jammy/main ppc64el m4 ppc64el 1.4.18-5ubuntu1 [213 kB] Get:16 http://ftpmaster.internal/ubuntu jammy/main ppc64el autoconf all 2.71-2 [338 kB] Get:17 http://ftpmaster.internal/ubuntu jammy/main ppc64el autotools-dev all 20180224.1+nmu1 [39.4 kB] Get:18 http://ftpmaster.internal/ubuntu jammy/main ppc64el automake all 1:1.16.5-1.1 [558 kB] Get:19 http://ftpmaster.internal/ubuntu jammy/main ppc64el autopoint all 0.21-4ubuntu3 [422 kB] Get:20 http://ftpmaster.internal/ubuntu jammy/main ppc64el libdebhelper-perl all 13.5.2ubuntu1 [66.0 kB] Get:21 http://ftpmaster.internal/ubuntu jammy/main ppc64el libtool all 2.4.6-15build1 [164 kB] Get:22 http://ftpmaster.internal/ubuntu jammy/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu jammy/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:24 http://ftpmaster.internal/ubuntu jammy/main ppc64el libsub-override-perl all 0.09-2 [9532 B] Get:25 http://ftpmaster.internal/ubuntu jammy/main ppc64el libfile-stripnondeterminism-perl all 1.12.1-1 [18.1 kB] Get:26 http://ftpmaster.internal/ubuntu jammy/main ppc64el dh-strip-nondeterminism all 1.12.1-1 [5200 B] Get:27 http://ftpmaster.internal/ubuntu jammy/main ppc64el libdw1 ppc64el 0.186-1 [290 kB] Get:28 http://ftpmaster.internal/ubuntu jammy/main ppc64el debugedit ppc64el 1:5.0-3 [51.7 kB] Get:29 http://ftpmaster.internal/ubuntu jammy/main ppc64el dwz ppc64el 0.14-1build1 [125 kB] Get:30 http://ftpmaster.internal/ubuntu jammy/main ppc64el gettext ppc64el 0.21-4ubuntu3 [895 kB] Get:31 http://ftpmaster.internal/ubuntu jammy/main ppc64el intltool-debian all 0.35.0+20060710.5 [24.9 kB] Get:32 http://ftpmaster.internal/ubuntu jammy/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:33 http://ftpmaster.internal/ubuntu jammy/main ppc64el debhelper all 13.5.2ubuntu1 [926 kB] Get:34 http://ftpmaster.internal/ubuntu jammy-proposed/universe ppc64el libgslcblas0 ppc64el 2.7.1+dfsg-3 [247 kB] Get:35 http://ftpmaster.internal/ubuntu jammy-proposed/universe ppc64el libgsl27 ppc64el 2.7.1+dfsg-3 [1315 kB] Get:36 http://ftpmaster.internal/ubuntu jammy-proposed/universe ppc64el libgsl-dev ppc64el 2.7.1+dfsg-3 [1825 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 22.1 MB in 1s (16.4 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 13379 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.37.2-4ubuntu1_ppc64el.deb ... Unpacking bsdextrautils (2.37.2-4ubuntu1) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../01-libuchardet0_0.0.7-1build1_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.7-1build1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-7_ppc64el.deb ... Unpacking groff-base (1.22.4-7) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../03-libpipeline1_1.5.4-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.4-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2build1_ppc64el.deb ... Unpacking man-db (2.9.4-2build1) ... Selecting previously unselected package libelf1:ppc64el. Preparing to unpack .../05-libelf1_0.186-1_ppc64el.deb ... Unpacking libelf1:ppc64el (0.186-1) ... Selecting previously unselected package libicu67:ppc64el. Preparing to unpack .../06-libicu67_67.1-7ubuntu1_ppc64el.deb ... Unpacking libicu67:ppc64el (67.1-7ubuntu1) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../07-libxml2_2.9.12+dfsg-5_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.12+dfsg-5) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.41-2_ppc64el.deb ... Unpacking libmagic-mgc (1:5.41-2) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../09-libmagic1_1%3a5.41-2_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.41-2) ... Selecting previously unselected package file. Preparing to unpack .../10-file_1%3a5.41-2_ppc64el.deb ... Unpacking file (1:5.41-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../11-gettext-base_0.21-4ubuntu3_ppc64el.deb ... Unpacking gettext-base (0.21-4ubuntu3) ... Selecting previously unselected package libsigsegv2:ppc64el. Preparing to unpack .../12-libsigsegv2_2.13-1ubuntu2_ppc64el.deb ... Unpacking libsigsegv2:ppc64el (2.13-1ubuntu2) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-5ubuntu1_ppc64el.deb ... Unpacking m4 (1.4.18-5ubuntu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.1_all.deb ... Unpacking automake (1:1.16.5-1.1) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.21-4ubuntu3_all.deb ... Unpacking autopoint (0.21-4ubuntu3) ... 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Unpacking libfile-stripnondeterminism-perl (1.12.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.12.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.1-1) ... Selecting previously unselected package libdw1:ppc64el. Preparing to unpack .../25-libdw1_0.186-1_ppc64el.deb ... Unpacking libdw1:ppc64el (0.186-1) ... Selecting previously unselected package debugedit. Preparing to unpack .../26-debugedit_1%3a5.0-3_ppc64el.deb ... Unpacking debugedit (1:5.0-3) ... Selecting previously unselected package dwz. Preparing to unpack .../27-dwz_0.14-1build1_ppc64el.deb ... Unpacking dwz (0.14-1build1) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.21-4ubuntu3_ppc64el.deb ... Unpacking gettext (0.21-4ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.5.2ubuntu1_all.deb ... Unpacking debhelper (13.5.2ubuntu1) ... Selecting previously unselected package libgslcblas0:ppc64el. Preparing to unpack .../32-libgslcblas0_2.7.1+dfsg-3_ppc64el.deb ... Unpacking libgslcblas0:ppc64el (2.7.1+dfsg-3) ... Selecting previously unselected package libgsl27:ppc64el. Preparing to unpack .../33-libgsl27_2.7.1+dfsg-3_ppc64el.deb ... Unpacking libgsl27:ppc64el (2.7.1+dfsg-3) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../34-libgsl-dev_2.7.1+dfsg-3_ppc64el.deb ... Unpacking libgsl-dev (2.7.1+dfsg-3) ... Selecting previously unselected package sbuild-build-depends-art-nextgen-simulation-tools-dummy. Preparing to unpack .../35-sbuild-build-depends-art-nextgen-simulation-tools-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-art-nextgen-simulation-tools-dummy (0.invalid.0) ... Setting up libpipeline1:ppc64el (1.5.4-1) ... Setting up bsdextrautils (2.37.2-4ubuntu1) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:ppc64el (67.1-7ubuntu1) ... Setting up libgslcblas0:ppc64el (2.7.1+dfsg-3) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.5.2ubuntu1) ... Setting up libmagic1:ppc64el (1:5.41-2) ... Setting up gettext-base (0.21-4ubuntu3) ... Setting up libgsl27:ppc64el (2.7.1+dfsg-3) ... Setting up file (1:5.41-2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:ppc64el (2.13-1ubuntu2) ... Setting up autopoint (0.21-4ubuntu3) ... Setting up libuchardet0:ppc64el (0.0.7-1build1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:ppc64el (0.186-1) ... Setting up libxml2:ppc64el (2.9.12+dfsg-5) ... Setting up libfile-stripnondeterminism-perl (1.12.1-1) ... Setting up libdw1:ppc64el (0.186-1) ... Setting up gettext (0.21-4ubuntu3) ... Setting up libgsl-dev (2.7.1+dfsg-3) ... Setting up libtool (2.4.6-15build1) ... Setting up m4 (1.4.18-5ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.12.1-1) ... Setting up dwz (0.14-1build1) ... Setting up groff-base (1.22.4-7) ... Setting up debugedit (1:5.0-3) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2build1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up dh-autoreconf (20) ... Setting up debhelper (13.5.2ubuntu1) ... Setting up sbuild-build-depends-art-nextgen-simulation-tools-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.34-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.15.0-163-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.37-10ubuntu1 dpkg-dev_1.20.9ubuntu3 g++-11_11.2.0-12ubuntu1 gcc-11_11.2.0-12ubuntu1 libc6-dev_2.34-0ubuntu3 libstdc++-11-dev_11.2.0-12ubuntu1 libstdc++6_11.2.0-12ubuntu1 linux-libc-dev_5.15.0-13.13 Package versions: adduser_3.118ubuntu5 advancecomp_2.1-2.1ubuntu1 apt_2.3.13 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4ubuntu3 autotools-dev_20180224.1+nmu1 base-files_12ubuntu2 base-passwd_3.5.52 bash_5.1-5ubuntu1 binutils_2.37-10ubuntu1 binutils-common_2.37-10ubuntu1 binutils-powerpc64le-linux-gnu_2.37-10ubuntu1 bsdextrautils_2.37.2-4ubuntu1 bsdutils_1:2.37.2-4ubuntu1 build-essential_12.9ubuntu2 bzip2_1.0.8-5 ca-certificates_20211016 coreutils_8.32-4ubuntu3 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zlib1g_1:1.2.11.dfsg-2ubuntu7 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Dec 7 17:23:04 2021 UTC gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D gpgv: issuer "steve.langasek@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./art-nextgen-simulation-tools_20160605+dfsg-4build2.dsc dpkg-source: info: extracting art-nextgen-simulation-tools in /<>/art-nextgen-simulation-tools-20160605+dfsg dpkg-source: info: unpacking art-nextgen-simulation-tools_20160605+dfsg.orig.tar.xz dpkg-source: info: unpacking art-nextgen-simulation-tools_20160605+dfsg-4build2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-test-comparison.patch dpkg-source: info: applying adapt_path_to_perl_scripts.patch dpkg-source: info: applying spellings.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-22599298 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-22599298 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-22599298 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package art-nextgen-simulation-tools dpkg-buildpackage: info: source version 20160605+dfsg-4build2 dpkg-buildpackage: info: source distribution jammy dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:8: installing './compile' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' Makefile.am: installing './INSTALL' Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=powerpc64le-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for main in -lm... yes checking for main in -lgslcblas... yes checking for main in -lgsl... yes checking whether make sets $(MAKE)... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99... yes checking for inline... inline checking for size_t... yes checking for floor... yes checking for pow... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build -a make -j4 make[1]: Entering directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' make all-am make[2]: Entering directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_illumina_src/art_illumina.o art_illumina_src/art_illumina.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_illumina_src/art_qual_scale.o art_illumina_src/art_qual_scale.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_illumina_src/empdist.o art_illumina_src/empdist.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_illumina_src/readSeqFile.o art_illumina_src/readSeqFile.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_illumina_src/seqRead.o art_illumina_src/seqRead.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_illumina_src/samRead.o art_illumina_src/samRead.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_454_src/art_454.o art_454_src/art_454.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_454_src/art.o art_454_src/art.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_454_src/read_profile.o art_454_src/read_profile.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_454_src/readSeqFile.o art_454_src/readSeqFile.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_454_src/seqRead.o art_454_src/seqRead.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_454_src/samRead.o art_454_src/samRead.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_SOLiD_src/art_SOLiD.o art_SOLiD_src/art_SOLiD.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_SOLiD_src/art.o art_SOLiD_src/art.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_SOLiD_src/readSeqFile.o art_SOLiD_src/readSeqFile.cpp art_454_src/read_profile.cpp: In member function ‘read_profile::default_profile(bool)’: art_454_src/read_profile.cpp:57:16: note: the layout of aggregates containing vectors with 4-byte alignment has changed in GCC 5 57 | cyc_base[0]='T'; cyc_base[1]='A'; cyc_base[2]='C'; cyc_base[3]='G'; | ~~~~~~~~~~~^~~~ g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_SOLiD_src/read_SOLiD.o art_SOLiD_src/read_SOLiD.cpp g++ -DHAVE_CONFIG_H -I. -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -c -o art_SOLiD_src/samRead.o art_SOLiD_src/samRead.cpp g++ -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -o art_illumina art_illumina_src/art_illumina.o art_illumina_src/art_qual_scale.o art_illumina_src/empdist.o art_illumina_src/readSeqFile.o art_illumina_src/seqRead.o art_illumina_src/samRead.o -lgsl -lgslcblas -lm g++ -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -o art_454 art_454_src/art_454.o art_454_src/art.o art_454_src/read_profile.o art_454_src/readSeqFile.o art_454_src/seqRead.o art_454_src/samRead.o -lgsl -lgslcblas -lm g++ -g -O3 -ffile-prefix-map=/<>/art-nextgen-simulation-tools-20160605+dfsg=. -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -Wl,-z,relro -Wl,-z,now -o art_SOLiD art_SOLiD_src/art_SOLiD.o art_SOLiD_src/art.o art_SOLiD_src/readSeqFile.o art_SOLiD_src/read_SOLiD.o art_SOLiD_src/samRead.o -lgsl -lgslcblas -lm make[2]: Leaving directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' make[1]: Leaving directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' set -e && \ cd examples && \ ./run_test_examples_454.sh && \ ./run_test_examples_SOLiD.sh && \ ./run_test_examples_illumina.sh =================================================================== ART_454 (Version 2.6.0) Simulation of 454 Pyrosequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. =================================================================== Single-end simulation Total CPU time used: 0.089273 The random seed for the run: 1638898042 Parameters Settings number of flow cycles: 100 fold of read coverage: 10X 454 Profile for Simulation the built-in GS-FLX profile Output Files FASTQ Sequence File: ./single_454_flx.fq ALN Alignment File: ./single_454_flx.aln SAM Alignment File: ./single_454_flx.sam Read Coverage File: ./single_454_flx.stat =================================================================== ART_454 (Version 2.6.0) Simulation of 454 Pyrosequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. =================================================================== Paired-end simulation Total CPU time used: 0.072996 The random seed for the run: 1638898042 Parameters Settings number of flow cycles: 100 fold of read coverage: 5X fragment length mean: 500 std: 20 454 Profile for Simulation the built-in GS-FLX profile Output Files FASTQ Sequence Files: the 1st reads: ./paired_454_flx1.fq the 2nd reads: ./paired_454_flx2.fq ALN Alignment Files: the 1st reads: ./paired_454_flx1.aln the 2nd reads: ./paired_454_flx2.aln SAM Alignment File: ./paired_454_flx.sam Read Coverage File: ./paired_454_flx.stat =================================================================== ART_454 (Version 2.6.0) Simulation of 454 Pyrosequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. =================================================================== Paired-end simulation Total CPU time used: 0.080527 The random seed for the run: 1638898042 Parameters Settings number of flow cycles: 200 fold of read coverage: 6X fragment length mean: 500 std: 20 454 Profile for Simulation the built-in GS-FLX Titanium profile Output Files FASTQ Sequence Files: the 1st reads: ./paired_454_flxTitan1.fq the 2nd reads: ./paired_454_flxTitan2.fq ALN Alignment Files: the 1st reads: ./paired_454_flxTitan1.aln the 2nd reads: ./paired_454_flxTitan2.aln SAM Alignment File: ./paired_454_flxTitan.sam Read Coverage File: ./paired_454_flxTitan.stat =================================================================== ART_454 (Version 2.6.0) Simulation of 454 Pyrosequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. =================================================================== Amplicon 5'-end sequencing with single-end reads Total CPU time used: 16.1224 The random seed for the run: 1638898042 Parameters Settings number of flow cycles: 100 # reads per amplion: 10 454 Profile for Simulation the built-in GS-FLX profile Output Files FASTQ Sequence File: ./amp_single_454.fq ALN Alignment File: ./amp_single_454.aln SAM Alignment File: ./amp_single_454.sam Read Coverage File: ./amp_single_454.stat =================================================================== ART_454 (Version 2.6.0) Simulation of 454 Pyrosequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. =================================================================== Amplicon two-end sequencing with paired-end reads Total CPU time used: 13.6106 The random seed for the run: 1638898058 Parameters Settings number of flow cycles: 100 # read pairs per amplion: 5 454 Profile for Simulation the built-in GS-FLX profile Output Files FASTQ Sequence Files: the 1st reads: ./amp_paired_454.fq the 2nd reads: ./amp_paired_4542.fq ALN Alignment Files: the 1st reads: ./amp_paired_454.aln the 2nd reads: ./amp_paired_4542.aln SAM Alignment File: ./amp_paired_454.sam Read Coverage File: ./amp_paired_454.stat =================================================================== ART_454 (Version 2.6.0) Simulation of 454 Pyrosequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. =================================================================== Single-end simulation Total CPU time used: 0.095662 The random seed for the run: 777 Parameters Settings number of flow cycles: 100 fold of read coverage: 10X 454 Profile for Simulation the built-in GS-FLX profile Output Files FASTQ Sequence File: ./single_454_t1.fq ALN Alignment File: ./single_454_t1.aln SAM Alignment File: ./single_454_t1.sam Read Coverage File: ./single_454_t1.stat =================================================================== ART_454 (Version 2.6.0) Simulation of 454 Pyrosequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. =================================================================== Single-end simulation Total CPU time used: 0.091468 The random seed for the run: 777 Parameters Settings number of flow cycles: 100 fold of read coverage: 10X 454 Profile for Simulation the built-in GS-FLX profile Output Files FASTQ Sequence File: ./single_454_t2.fq ALN Alignment File: ./single_454_t2.aln SAM Alignment File: ./single_454_t2.sam Read Coverage File: ./single_454_t2.stat compare difference of two simulation datasets after normalising known difference ================================================================= ART_SOLiD (Version 1.3.3) Simulation of Applied Biosystems' SOLiD Sequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. ================================================================= Single-end simulation Total CPU time used: 0.139259 The random seed for the run: 1638898072 Parameters Settings fold of read coverage: 10X read length: 25 SOLiD Error Profile for Simulation the built-in 35bp error profile Output Files FASTQ Sequence File: ./single_dat.fq MAP Alignment File: ./single_dat.map SAM Alignment File: ./single_dat.sam convert a map file to a UCSC BED file ../map2bed.pl single_dat.bed single_dat.map ================================================================= ART_SOLiD (Version 1.3.3) Simulation of Applied Biosystems' SOLiD Sequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. ================================================================= Single-end simulation Total CPU time used: 0.148788 The random seed for the run: 1638898072 Parameters Settings fold of read coverage: 20X read length: 75 SOLiD Error Profile for Simulation the profile provided: ../SOLiD_profiles/profile_pseudo Output Files FASTQ Sequence File: ./dat_userProfile.fq MAP Alignment File: ./dat_userProfile.map SAM Alignment File: ./dat_userProfile.sam ================================================================= ART_SOLiD (Version 1.3.3) Simulation of Applied Biosystems' SOLiD Sequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. ================================================================= Mate-Pair (F3-R3) simulation Total CPU time used: 0.229365 The random seed for the run: 1638898073 Parameters Settings fold of read coverage: 20X F3 read length: 35 R3 read length: 35 fragment length mean: 2000 std: 50 SOLiD Error Profile for Simulation the built-in 35bp error profile Output Files FASTQ Sequence Files: the 1st reads: ./matepair_dat_R3.fq the 2nd reads: ./matepair_dat_F3.fq MAP Alignment Files: the 1st reads: ./matepair_dat_R3.map the 2nd reads: ./matepair_dat_F3.map SAM Alignment File: ./matepair_dat.sam convert two map files to a UCSC BED file ../map2bed.pl maptepair.bed matepair_dat1.map matepair_dat2.map ================================================================= ART_SOLiD (Version 1.3.3) Simulation of Applied Biosystems' SOLiD Sequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. ================================================================= Warning: you are using the 75bp error profile for testing only. Mate-Pair (F3-R3) simulation Total CPU time used: 0.09952 The random seed for the run: 777 Parameters Settings fold of read coverage: 10X F3 read length: 50 R3 read length: 50 fragment length mean: 1500 std: 50 SOLiD Error Profile for Simulation the 75bp error profile for testing only Output Files FASTQ Sequence Files: the 1st reads: ./matepair_fs1_R3.fq the 2nd reads: ./matepair_fs1_F3.fq MAP Alignment Files: the 1st reads: ./matepair_fs1_R3.map the 2nd reads: ./matepair_fs1_F3.map SAM Alignment File: ./matepair_fs1.sam ================================================================= ART_SOLiD (Version 1.3.3) Simulation of Applied Biosystems' SOLiD Sequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. ================================================================= Warning: you are using the 75bp error profile for testing only. Mate-Pair (F3-R3) simulation Total CPU time used: 0.097194 The random seed for the run: 777 Parameters Settings fold of read coverage: 10X F3 read length: 50 R3 read length: 50 fragment length mean: 1500 std: 50 SOLiD Error Profile for Simulation the 75bp error profile for testing only Output Files FASTQ Sequence Files: the 1st reads: ./matepair_fs2_R3.fq the 2nd reads: ./matepair_fs2_F3.fq MAP Alignment Files: the 1st reads: ./matepair_fs2_R3.map the 2nd reads: ./matepair_fs2_F3.map SAM Alignment File: ./matepair_fs2.sam compare two simulation datasets 4c4 < @PG ID:03 PN:ART_SOLiD CL:../art_SOLiD -r 777 -s testSeq.fa ./matepair_fs1 50 10 1500 50 --- > @PG ID:03 PN:ART_SOLiD CL:../art_SOLiD -r 777 -s testSeq.fa ./matepair_fs2 50 10 1500 50 ================================================================= ART_SOLiD (Version 1.3.3) Simulation of Applied Biosystems' SOLiD Sequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. ================================================================= Warning: you are using the 75bp error profile for testing only. Paired-end (F3-F5) simulation Total CPU time used: 0.338638 The random seed for the run: 1638898073 Parameters Settings fold of read coverage: 50X F3 read length: 75 F5 read length: 35 fragment length mean: 250 std: 10 SOLiD Error Profile for Simulation the 75bp error profile for testing only Output Files FASTQ Sequence Files: the 1st reads: ./paired_dat_F5.fq the 2nd reads: ./paired_dat_F3.fq MAP Alignment Files: the 1st reads: ./paired_dat_F5.map the 2nd reads: ./paired_dat_F3.map SAM Alignment File: ./paired_dat.sam ================================================================= ART_SOLiD (Version 1.3.3) Simulation of Applied Biosystems' SOLiD Sequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. ================================================================= Amplicon single-end sequencing simulation Total CPU time used: 348.948 The random seed for the run: 1638898073 Parameters Settings # reads per amplion: 100 read length: 25 SOLiD Error Profile for Simulation the built-in 35bp error profile Output Files FASTQ Sequence File: ./amp_single.fq MAP Alignment File: ./amp_single.map SAM Alignment File: ./amp_single.sam ================================================================= ART_SOLiD (Version 1.3.3) Simulation of Applied Biosystems' SOLiD Sequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. ================================================================= Warning: you are using the 75bp error profile for testing only. Amplicon matepair sequencing simulation Total CPU time used: 180.827 The random seed for the run: 1638898422 Parameters Settings # read pairs per amplion: 80 F3 read length: 50 R3 read length: 50 SOLiD Error Profile for Simulation the 75bp error profile for testing only Output Files FASTQ Sequence Files: the 1st reads: ./amp_matepair_R3.fq the 2nd reads: ./amp_matepair_F3.fq MAP Alignment Files: the 1st reads: ./amp_matepair_R3.map the 2nd reads: ./amp_matepair_F3.map SAM Alignment File: ./amp_matepair.sam ================================================================= ART_SOLiD (Version 1.3.3) Simulation of Applied Biosystems' SOLiD Sequencing Copyright (c) 2008-2015, Weichun Huang. All Rights Reserved. ================================================================= Amplicon paired-end sequencing simulation Total CPU time used: 129.352 The random seed for the run: 1638898603 Parameters Settings # read pairs per amplion: 50 F3 read length: 35 F5 read length: 25 SOLiD Error Profile for Simulation the built-in 35bp error profile Output Files FASTQ Sequence Files: the 1st reads: ./amp_paired_F5.fq the 2nd reads: ./amp_paired_F3.fq MAP Alignment Files: the 1st reads: ./amp_paired_F5.map the 2nd reads: ./amp_paired_F3.map SAM Alignment File: ./amp_paired.sam ====================ART==================== ART_Illumina (2008-2016) Q Version 2.5.8 (June 6, 2016) Contact: Weichun Huang ------------------------------------------- Single-end Simulation Total CPU time used: 0.096218 The random seed for the run: 1638898733 Parameters used during run Read Length: 35 Genome masking 'N' cutoff frequency: 1 in 35 Fold Coverage: 10X Profile Type: Combined ID Tag: Quality Profile(s) First Read: Genome Analyzer I Length 36 R1 (built-in profile) Output files FASTQ Sequence File: ./single_end_com.fq ALN Alignment File: ./single_end_com.aln SAM Alignment File: ./single_end_com.sam ====================ART==================== ART_Illumina (2008-2016) Q Version 2.5.8 (June 6, 2016) Contact: Weichun Huang ------------------------------------------- Single-end Simulation Total CPU time used: 0.077024 The random seed for the run: 1638898733 Parameters used during run Read Length: 50 Genome masking 'N' cutoff frequency: 1 in 50 Fold Coverage: 10X Profile Type: Separated ID Tag: Quality Profile(s) First Read: MiniSeq TruSeq Length 51 R1 (built-in profile) Output files FASTQ Sequence File: ./single_end_sep.fq ALN Alignment File: ./single_end_sep.aln SAM Alignment File: ./single_end_sep.sam ====================ART==================== ART_Illumina (2008-2016) Q Version 2.5.8 (June 6, 2016) Contact: Weichun Huang ------------------------------------------- Paired-end sequencing simulation Total CPU time used: 0.044612 The random seed for the run: 1638898733 Parameters used during run Read Length: 150 Genome masking 'N' cutoff frequency: 1 in 150 Fold Coverage: 10X Mean Fragment Length: 500 Standard Deviation: 10 Profile Type: Combined ID Tag: Quality Profile(s) First Read: HiSeq 2500 Length 150 R1 (built-in profile) First Read: HiSeq 2500 Length 150 R2 (built-in profile) Output files FASTQ Sequence Files: the 1st reads: ./paired_end_com1.fq the 2nd reads: ./paired_end_com2.fq ALN Alignment Files: the 1st reads: ./paired_end_com1.aln the 2nd reads: ./paired_end_com2.aln SAM Alignment File: ./paired_end_com.sam ====================ART==================== ART_Illumina (2008-2016) Q Version 2.5.8 (June 6, 2016) Contact: Weichun Huang ------------------------------------------- Paired-end sequencing simulation Total CPU time used: 0.072518 The random seed for the run: 1638898733 Parameters used during run Read Length: 100 Genome masking 'N' cutoff frequency: 1 in 100 Fold Coverage: 10X Mean Fragment Length: 500 Standard Deviation: 10 Profile Type: Separated ID Tag: Quality Profile(s) First Read: HiSeq 2000 Length 100 R1 (built-in profile) First Read: HiSeq 2000 Length 100 R2 (built-in profile) Output files FASTQ Sequence Files: the 1st reads: ./paired_end_sep1.fq the 2nd reads: ./paired_end_sep2.fq ALN Alignment Files: the 1st reads: ./paired_end_sep1.aln the 2nd reads: ./paired_end_sep2.aln SAM Alignment File: ./paired_end_sep.sam ====================ART==================== ART_Illumina (2008-2016) Q Version 2.5.8 (June 6, 2016) Contact: Weichun Huang ------------------------------------------- Matepair-end sequencing simulation Total CPU time used: 0.053726 The random seed for the run: 1638898733 Parameters used during run Read Length: 100 Genome masking 'N' cutoff frequency: 1 in 100 Fold Coverage: 10X Mean Fragment Length: 2500 Standard Deviation: 50 Profile Type: Combined ID Tag: Quality Profile(s) First Read: HiSeq 2500 Length 126 R1 (built-in profile) First Read: HiSeq 2500 Length 126 R2 (built-in profile) Output files FASTQ Sequence Files: the 1st reads: ./matepair_com1.fq the 2nd reads: ./matepair_com2.fq ALN Alignment Files: the 1st reads: ./matepair_com1.aln the 2nd reads: ./matepair_com2.aln SAM Alignment File: ./matepair_com.sam ====================ART==================== ART_Illumina (2008-2016) Q Version 2.5.8 (June 6, 2016) Contact: Weichun Huang ------------------------------------------- Amplicon 5'-end sequencing simulation Total CPU time used: 0.585829 The random seed for the run: 1638898733 Parameters used during run Read Length: 100 Genome masking 'N' cutoff frequency: 1 in 100 # Reads per Amplion: 2 Profile Type: Combined ID Tag: Quality Profile(s) First Read: HiSeqX v2.5 TruSeq Length 151 R1 (built-in profile) Output files FASTQ Sequence File: ./amp_5_end_com.fq ALN Alignment File: ./amp_5_end_com.aln SAM Alignment File: ./amp_5_end_com.sam ====================ART==================== ART_Illumina (2008-2016) Q Version 2.5.8 (June 6, 2016) Contact: Weichun Huang ------------------------------------------- Amplicon paired-end sequencing simulation Total CPU time used: 0.647538 The random seed for the run: 1638898734 Parameters used during run Read Length: 100 Genome masking 'N' cutoff frequency: 1 in 100 # Read Pairs per Amplion: 1 Profile Type: Combined ID Tag: Quality Profile(s) First Read: MiSeq v1 Length 250 R1 (built-in profile) First Read: MiSeq v1 Length 250 R2 (built-in profile) Output files FASTQ Sequence Files: the 1st reads: ./amp_pair1.fq the 2nd reads: ./amp_pair2.fq ALN Alignment Files: the 1st reads: ./amp_pair1.aln the 2nd reads: ./amp_pair2.aln SAM Alignment File: ./amp_pair.sam ====================ART==================== ART_Illumina (2008-2016) Q Version 2.5.8 (June 6, 2016) Contact: Weichun Huang ------------------------------------------- Amplicon matepair sequencing simulation Total CPU time used: 0.737221 The random seed for the run: 1638898734 Parameters used during run Read Length: 100 Genome masking 'N' cutoff frequency: 1 in 100 # Read Pairs per Amplion: 1 Profile Type: Combined ID Tag: Quality Profile(s) First Read: MiSeq v3 Length 251 R1 (built-in profile) First Read: MiSeq v3 Length 251 R2 (built-in profile) Output files FASTQ Sequence Files: the 1st reads: ./amp_matepair1.fq the 2nd reads: ./amp_matepair2.fq ALN Alignment Files: the 1st reads: ./amp_matepair1.aln the 2nd reads: ./amp_matepair2.aln SAM Alignment File: ./amp_matepair.sam ====================ART==================== ART_Illumina (2008-2016) Q Version 2.5.8 (June 6, 2016) Contact: Weichun Huang ------------------------------------------- Paired-end sequencing simulation Total CPU time used: 0.058059 The random seed for the run: 777 Parameters used during run Read Length: 100 Genome masking 'N' cutoff frequency: 1 in 100 Fold Coverage: 10X Mean Fragment Length: 500 Standard Deviation: 10 Profile Type: Combined ID Tag: Quality Profile(s) First Read: HiSeqX v2.5 PCR free Length 151 R1 (built-in profile) First Read: HiSeqX v2.5 PCR free Length 151 R2 (built-in profile) Output files FASTQ Sequence Files: the 1st reads: ./paired_end_com_f11.fq the 2nd reads: ./paired_end_com_f12.fq ALN Alignment Files: the 1st reads: ./paired_end_com_f11.aln the 2nd reads: ./paired_end_com_f12.aln SAM Alignment File: ./paired_end_com_f1.sam ====================ART==================== ART_Illumina (2008-2016) Q Version 2.5.8 (June 6, 2016) Contact: Weichun Huang ------------------------------------------- Paired-end sequencing simulation Total CPU time used: 0.059186 The random seed for the run: 777 Parameters used during run Read Length: 100 Genome masking 'N' cutoff frequency: 1 in 100 Fold Coverage: 10X Mean Fragment Length: 500 Standard Deviation: 10 Profile Type: Combined ID Tag: Quality Profile(s) First Read: HiSeqX v2.5 PCR free Length 151 R1 (built-in profile) First Read: HiSeqX v2.5 PCR free Length 151 R2 (built-in profile) Output files FASTQ Sequence Files: the 1st reads: ./paired_end_com_f21.fq the 2nd reads: ./paired_end_com_f22.fq ALN Alignment Files: the 1st reads: ./paired_end_com_f21.aln the 2nd reads: ./paired_end_com_f22.aln SAM Alignment File: ./paired_end_com_f2.sam ====================ART==================== ART_Illumina (2008-2016) Q Version 2.5.8 (June 6, 2016) Contact: Weichun Huang ------------------------------------------- Paired-end sequencing simulation Total CPU time used: 0.061405 The random seed for the run: 1638898735 Parameters used during run Read Length: 100 Genome masking 'N' cutoff frequency: 1 in 100 Fold Coverage: 10X Mean Fragment Length: 500 Standard Deviation: 10 First quality shift: 10 Second quality shift: 10 Profile Type: Combined ID Tag: Quality Profile(s) First Read: HiSeq 2000 Length 100 R1 (built-in profile) First Read: HiSeq 2000 Length 100 R2 (built-in profile) Output files FASTQ Sequence Files: the 1st reads: ./paired_end_com_f11.fq the 2nd reads: ./paired_end_com_f12.fq ALN Alignment Files: the 1st reads: ./paired_end_com_f11.aln the 2nd reads: ./paired_end_com_f12.aln SAM Alignment File: ./paired_end_com_f1.sam ====================ART==================== ART_Illumina (2008-2016) Q Version 2.5.8 (June 6, 2016) Contact: Weichun Huang ------------------------------------------- Paired-end sequencing simulation Total CPU time used: 0.061969 The random seed for the run: 1638898735 Parameters used during run Read Length: 75 'N' genomic regions masking turned off Fold Coverage: 10X Mean Fragment Length: 500 Standard Deviation: 10 Profile Type: Combined ID Tag: Quality Profile(s) First Read: NextSeq 500 v2 Length 76 R1 (built-in profile) First Read: NextSeq 500 v2 Length 76 R2 (built-in profile) Output files FASTQ Sequence Files: the 1st reads: ./paired_nomask1.fq the 2nd reads: ./paired_nomask2.fq ALN Alignment Files: the 1st reads: ./paired_nomask1.aln the 2nd reads: ./paired_nomask2.aln SAM Alignment File: ./paired_nomask.sam rm -f *.aln *.fq *.bed *.map *.sam *.stat make[1]: Leaving directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j4 install DESTDIR=/<>/art-nextgen-simulation-tools-20160605\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' make[2]: Entering directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' make[2]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/<>/art-nextgen-simulation-tools-20160605+dfsg/debian/tmp/usr/bin' /usr/bin/mkdir -p '/<>/art-nextgen-simulation-tools-20160605+dfsg/debian/tmp/usr/bin' /usr/bin/install -c aln2bed.pl map2bed.pl ART_profiler_454/art_profiler_454 ART_profiler_illumina/combinedAvg.pl ART_profiler_illumina/fastqReadAvg.pl ART_profiler_illumina/art_profiler_illumina ART_profiler_illumina/empDist.pl ART_profiler_illumina/summation.pl '/<>/art-nextgen-simulation-tools-20160605+dfsg/debian/tmp/usr/bin' /usr/bin/install -c art_illumina art_454 art_SOLiD '/<>/art-nextgen-simulation-tools-20160605+dfsg/debian/tmp/usr/bin' make[2]: Leaving directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' make[1]: Leaving directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' debian/rules override_dh_install-arch make[1]: Entering directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' dh_install -a # aln2bed.pl seems to be of general use - the other perl scripts are called by art_profiler_illumina # see patch for the latter regarding PATH to *.pl files mkdir -p debian/art-nextgen-simulation-tools/usr/lib/art-nextgen-simulation-tools for pl in debian/art-nextgen-simulation-tools/usr/bin/*.pl ; do \ if [ `basename ${pl}` = aln2bed.pl ] ; then \ mv ${pl} debian/art-nextgen-simulation-tools/usr/bin/`basename ${pl} .pl` ; \ else \ mv ${pl} debian/art-nextgen-simulation-tools/usr/lib/art-nextgen-simulation-tools ; \ fi ; \ done make[1]: Leaving directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' dh_installchangelogs ChangeLog make[1]: Leaving directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' debian/rules override_dh_installexamples-arch make[1]: Entering directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' dh_installexamples -a for ex in examples/run_test_examples_*.sh ; do \ sed -e 's?=\.\./?=/usr/bin/?' \ -e 's?^\.\./?/usr/bin/?' \ -e 's/aln2bed\.pl/aln2bed/' \ $ex > debian/art-nextgen-simulation-tools/usr/share/doc/art-nextgen-simulation-tools/examples/`basename $ex` ; \ done make[1]: Leaving directory '/<>/art-nextgen-simulation-tools-20160605+dfsg' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/art-nextgen-simulation-tools/usr/bin/art_454: Unknown DWARF DW_FORM_0x1f20 5cf4ba2334ecb2bf2cadd97cf681c87d21ba3ef7 debugedit: debian/art-nextgen-simulation-tools/usr/bin/art_SOLiD: Unknown DWARF DW_FORM_0x1f20 ad58b7bf2c130f7766bd32ae4c1830e63741921f debugedit: debian/art-nextgen-simulation-tools/usr/bin/art_illumina: Unknown DWARF DW_FORM_0x1f20 735252c3544ea5f37b9820c5ac5c3affd8fac83e dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package art-nextgen-simulation-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package art-nextgen-simulation-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing art-nextgen-simulation-tools (in debian/art-nextgen-simulation-tools); do_strip: , oemstrip: pkgstriptranslations: processing art-nextgen-simulation-tools-dbgsym (in debian/.debhelper/art-nextgen-simulation-tools/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/art-nextgen-simulation-tools/DEBIAN/control, package art-nextgen-simulation-tools, directory debian/art-nextgen-simulation-tools .. removing usr/share/doc/art-nextgen-simulation-tools/changelog.gz pkgstripfiles: processing control file: debian/.debhelper/art-nextgen-simulation-tools/dbgsym-root/DEBIAN/control, package art-nextgen-simulation-tools-dbgsym, directory debian/.debhelper/art-nextgen-simulation-tools/dbgsym-root dpkg-deb: building package 'art-nextgen-simulation-tools-dbgsym' in 'debian/.debhelper/scratch-space/build-art-nextgen-simulation-tools/art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4build2_ppc64el.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package art-nextgen-simulation-tools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'art-nextgen-simulation-tools' in '../art-nextgen-simulation-tools_20160605+dfsg-4build2_ppc64el.deb'. Renaming art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4build2_ppc64el.deb to art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4build2_ppc64el.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../art-nextgen-simulation-tools_20160605+dfsg-4build2_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-12-07T17:39:08Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ art-nextgen-simulation-tools_20160605+dfsg-4build2_ppc64el.changes: ------------------------------------------------------------------- Format: 1.8 Date: Tue, 07 Dec 2021 17:23:03 +0000 Source: art-nextgen-simulation-tools Binary: art-nextgen-simulation-tools Built-For-Profiles: noudeb Architecture: ppc64el Version: 20160605+dfsg-4build2 Distribution: jammy-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Steve Langasek Description: art-nextgen-simulation-tools - simulation tools to generate synthetic next-generation sequencing Changes: art-nextgen-simulation-tools (20160605+dfsg-4build2) jammy; urgency=medium . * No-change rebuild against libgsl27 Checksums-Sha1: 31bb73cf168e4df291caccddd1cf7df6b3010a8a 1313298 art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4build2_ppc64el.ddeb 2e991e30fbf1e7691df669f43692e2280dae9e20 6114 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Original-Maintainer: Debian Med Packaging Team +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: art-nextgen-simulation-tools Binary: art-nextgen-simulation-tools art-nextgen-simulation-tools-dbgsym Architecture: ppc64el Version: 20160605+dfsg-4build2 Checksums-Md5: 882501b8c96ce12ac7f55e90a8fadfa8 1313298 art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4build2_ppc64el.ddeb dcab22fbbed0a46a38e4f3e59e88741c 1771854 art-nextgen-simulation-tools_20160605+dfsg-4build2_ppc64el.deb Checksums-Sha1: 31bb73cf168e4df291caccddd1cf7df6b3010a8a 1313298 art-nextgen-simulation-tools-dbgsym_20160605+dfsg-4build2_ppc64el.ddeb 771477752073afc24a19f7d35bf1d4d1f32b0776 1771854 art-nextgen-simulation-tools_20160605+dfsg-4build2_ppc64el.deb Checksums-Sha256: e00cbd81f84680f14edcb300a1f96cd8cf494bca60fb243a7bd46eb78cd90dd9 1313298 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2.37.2-4ubuntu1), xz-utils (= 5.2.5-2build1), zlib1g (= 1:1.2.11.dfsg-2ubuntu7) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1638897783" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ art-nextgen-simulation-tools_20160605+dfsg-4build2_ppc64el.deb -------------------------------------------------------------- new Debian package, version 2.0. size 1771854 bytes: control archive=2079 bytes. 1812 bytes, 30 lines control 2723 bytes, 33 lines md5sums Package: art-nextgen-simulation-tools Version: 20160605+dfsg-4build2 Architecture: ppc64el Maintainer: Ubuntu Developers Installed-Size: 9160 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.3.1), libgsl27 (>= 2.7.1), libstdc++6 (>= 9) Suggests: art-nextgen-simulation-tools-profiles Section: science Priority: optional Homepage: https://www.niehs.nih.gov/research/resources/software/biostatistics/art/ Description: simulation tools to generate synthetic next-generation sequencing reads ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user own read error model or quality profiles. ART supports simulation of single-end, paired-end/mate-pair reads of three major commercial next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and Applied Biosystems' SOLiD. ART can be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for the simulation study of the 1000 Genomes Project . ART is implemented in C++ with optimized algorithms and is highly efficient in read simulation. ART outputs reads in the FASTQ format, and alignments in the ALN format. ART can also generate alignments in the SAM alignment or UCSC BED file format. ART can be used together with genome variants simulators (e.g. VarSim) for evaluating variant calling tools or methods. 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+------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: n/a Build-Time: 725 Distribution: jammy-proposed Host Architecture: ppc64el Install-Time: 8 Job: art-nextgen-simulation-tools_20160605+dfsg-4build2.dsc Machine Architecture: ppc64el Package: art-nextgen-simulation-tools Package-Time: 733 Source-Version: 20160605+dfsg-4build2 Space: n/a Status: successful Version: 20160605+dfsg-4build2 -------------------------------------------------------------------------------- Finished at 2021-12-07T17:39:08Z Build needed 00:12:13, no disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=jammy --arch=ppc64el PACKAGEBUILD-22599298 Scanning for processes to kill in build PACKAGEBUILD-22599298