#0 0x00007ffff7b4a69d in pkgCacheGenerator::NewVersion (this=this@entry=0x7fffffffd520, Ver=..., VerStr=..., Next=0) at pkgcachegen.cc:731 Version = 348430 #1 0x00007ffff7b4c43f in pkgCacheGenerator::MergeListVersion (this=this@entry=0x7fffffffd520, List=..., Pkg=..., Version=..., OutVer=@0x7fffffffc668: 0x0) at pkgcachegen.cc:377 Ver = {> = {> = {}, _vptr.Iterator = 0x42a070 , S = 0x7ffff2dc2bf0, Owner = 0x7fffffffd5f8}, } Grp = {> = {> = {}, _vptr.Iterator = 0x7ffff5e13850, S = 0x7ffff7b4a33e , Owner = 0x630fc0}, HashIndex = 32} CurMd5 = {Sum = "\376Gi\000\000\000\000\000\340\305\377\377\377\177\000"} Desc = warning: can't find linker symbol for virtual table for `pkgCache::DescIterator' value {> = {> = {}, _vptr.Iterator = 0x7ffff7dd8ec0, S = 0x7fffffffc5e0, Owner = 0x7fffffffd520}, } descindex = LastDesc = LastVer = 0x7ffff5fbe148 oldMap = 0x7ffff47d6000 Hash = 17801 verindex = CurLang = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x7fffffffc680 "(Ad"}} #2 0x00007ffff7b4d713 in pkgCacheGenerator::MergeList (this=0x7fffffffd520, List=..., OutVer=0x0) at pkgcachegen.cc:222 PackageName = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x644128 "gromacs-openmpi"}} Arch = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x642a28 "i386"}} Version = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x63a7c8 "4.5.5-2"}} Pkg = {> = {> = {}, _vptr.Iterator = 0x631090 , S = 0x7ffff46be140, Owner = 0x7fffffffd5f8}, HashIndex = 0} Counter = 3428 #3 0x00007ffff7ba17aa in debPackagesIndex::Merge (this=0x659c40, Gen=..., Prog=) at deb/debindexfile.cc:327 Tmp = {Access = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x638d28 "http"}}, User = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x630fd8 ""}}, Password = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x630fd8 ""}}, Host = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x647028 "fr.archive.ubuntu.com"}}, Path = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x63a618 "/ubuntu/"}}, Port = 0} File = {> = {> = {}, _vptr.Iterator = 0x42a450 , S = 0x7ffff4513850, Owner = 0x7fffffffd5f8}, } ReleaseFile = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x64b9f8 "gridengine-common"}} releaseExists = PackageFile = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x646f38 "/var/lib/apt/lists/fr.archive.ubuntu.com_ubuntu_dists_quantal_universe_binary-i386_Packages"}} Pkg = {_vptr.FileFd = 0x631070 , iFd = 10, Flags = 1, FileName = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x646f38 "/var/lib/apt/lists/fr.archive.ubuntu.com_ubuntu_dists_quantal_universe_binary-i386_Packages"}}, TemporaryFileName = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x630fd8 ""}}, d = 0x0} Parser = { = {_vptr.ListParser = 0x7ffff7dd68b0 , Owner = 0x7fffffffd520, OldDepVer = {> = {> = {}, _vptr.Iterator = 0x42a070 , S = 0x7ffff5fc2ba8, Owner = 0x7fffffffd5f8}, }, OldDepLast = 0x7ffff5fd21a4, FoundFileDeps = false}, d = 0x7ffff722c1fc <_IO_vfprintf_internal+10300>, Tags = {_vptr.pkgTagFile = 0x7ffff7dd5610 , d = 0x646fd0}, Section = {_vptr.pkgTagSection = 0x7ffff7dd5630 , Section = 0x6946e7 "Package: gromacs-openmpi\nPriority: extra\nSection: universe/science\nInstalled-Size: 11959\nMaintainer: Ubuntu Developers \nOriginal-Maintainer: Debichem Team , 808583168, 0, 0, 0, 0, 4155517456, 32767, 2049, 0, 13387, 0, 1, 0, 33188, 0, 0, 0, 0, 0, 28566993, 0, 4096, 0, 55800, 0, 1350333281, 0, 509306771, 0, 1350316620, 0, 0, 0, 1350333277, 0, 625306676, 0, 0, 0, 0, 0, 0, 0, 0, 0, 4294955568, 32767, 4294955568, 32767, 4155525780, 32767, 28566993, 0, 0, 0, 0, 0, 0, 0, 32, 1714749488, 4294955248, 32767, 4294955056, 32767, 4294954544, 32767}, AlphaIndexes = {0, 0, 0, 0, 3, 7, 0 , 2, 0 , 17, 0 , 6, 0, 0, 14, 0 , 23, 0, 0, 0, 0, 15, 0 , 10, 0 , 11, 9, 0, 0, 0, 0, 0, 0, 0, 19, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 20, 0, 21, 0, 0, 0, 0, 0, 1, 0 , 22, 0, 0, 18, 0 , 8, 0 , 13, 0 , 16, 0 , 12, 0, 0, 0, 0}, TagCount = 23, d = 0xec7169a475646400, Stop = 0x694a77 "\nPackage: gromit\nPriority: optional\nSection: universe/x11\nInstalled-Size: 121\nMaintainer: Ubuntu Developers \nOriginal-Maintainer: Pierre Chifflier , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x63ae98 "i386"}}, Architectures = {, std::allocator >, std::allocator, std::allocator > > >> = {_M_impl = {, std::allocator > >> = {<__gnu_cxx::new_allocator, std::allocator > >> = {}, }, _M_start = 0x653e30, _M_finish = 0x653e40, _M_end_of_storage = 0x653e40}}, }, MultiArchEnabled = true} #4 0x00007ffff7b46632 in BuildCache (Gen=..., Progress=Progress@entry=0x7fffffffd760, CurrentSize=@0x7fffffffd4c8: 70817943, TotalSize=TotalSize@entry=121542502, Start=..., End=...) at pkgcachegen.cc:1184 Size = 28566993 I = #5 0x00007ffff7b49339 in pkgCacheGenerator::MakeStatusCache (List=..., Progress=0x7fffffffd760, OutMap=0x7fffffffd8b0, AllowMem=) at pkgcachegen.cc:1376 Gen = {UniqHash = {0x7ffff2edf480, 0x7ffff2edf488, 0x0, 0x7ffff2edf7c8, 0x7ffff2edf3e8, 0x7ffff2edf4d0, 0x7ffff2edf7e0, 0x7ffff2edf520, 0x7ffff2edf418, 0x7ffff2edf7d8, 0x7ffff2edf498, 0x7ffff2edf518, 0x7ffff2edf598, 0x7ffff2edf3f8, 0x7ffff2edf5a0, 0x0, 0x0, 0x0, 0x7ffff2edf428, 0x7ffff2edf618, 0x7ffff2edf4c0, 0x7ffff2edf4f0, 0x7ffff2edf3d8, 0x7ffff2edf528, 0x7ffff2edf588, 0x7ffff2edf3d0}, Map = @0x63d010, Cache = {_vptr.pkgCache = 0x7ffff7dd4ad0 , CacheFile = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x630fd8 ""}}, Map = @0x63d010, HeaderP = 0x7ffff2ed6000, GrpP = 0x7ffff2ed6000, PkgP = 0x7ffff2ed6000, VerFileP = 0x7ffff2ed6000, DescFileP = 0x7ffff2ed6000, PkgFileP = 0x7ffff2ed6000, VerP = 0x7ffff2ed6000, DescP = 0x7ffff2ed6000, ProvideP = 0x7ffff2ed6000, DepP = 0x7ffff2ed6000, StringItemP = 0x7ffff2ed6000, StrP = 0x7ffff2ed6000 "\334v\376\230", VS = 0x7ffff7dd9190 , MultiArchEnabled = true}, Progress = 0x7fffffffd760, PkgFileName = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x646f38 "/var/lib/apt/lists/fr.archive.ubuntu.com_ubuntu_dists_quantal_universe_binary-i386_Packages"}}, CurrentFile = 0x7ffff4513850, FoundFileDeps = false} Debug = false Files = { >> = {_M_impl = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_start = 0x670790, _M_finish = 0x670978, _M_end_of_storage = 0x670990}}, } TotalSize = 121542502 EndOfSource = Writeable = CacheF = Map = {Ptr = 0x63d010} CurrentSize = 70817943 CacheFile = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x65e528 "/var/cache/apt/pkgcache.bin"}} SrcCacheFile = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x65e5a8 "/var/cache/apt/srcpkgcache.bin"}} #6 0x00007ffff7b400c1 in pkgCacheFile::BuildCaches (this=0x7fffffffd8a0, Progress=0x7fffffffd760, WithLock=true) at cachefile.cc:83 ErrorWasEmpty = true Res = #7 0x000000000041fcc8 in CacheFile::BuildCaches (this=this@entry=0x7fffffffd8a0, WithLock=WithLock@entry=true) at apt-get.cc:101 Prog = { = {_vptr.OpProgress = 0x630b10 , Current = 42250950, Total = 121542502, Size = 28566993, SubTotal = 28566993, LastPercent = 39.0426674, LastTime = {tv_sec = 0, tv_usec = 0}, LastOp = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x65e568 "Reading package lists"}}, LastSubOp = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x6461c8 "http://fr.archive.ubuntu.com/ubuntu/ quantal/universe i386 Packages"}}, Op = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x66fb08 "Reading package lists"}}, SubOp = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x6461c8 "http://fr.archive.ubuntu.com/ubuntu/ quantal/universe i386 Packages"}}, Percent = 39.1411247, MajorChange = false}, OldOp = {static npos = , _M_dataplus = {> = {<__gnu_cxx::new_allocator> = {}, }, _M_p = 0x63c858 "a"}}, NoUpdate = true, NoDisplay = false, LastLen = 0} #8 0x000000000040b1f2 in DoUpdate (CmdL=...) at apt-get.cc:1688 Cache = { = {_vptr.pkgCacheFile = 0x42a0f0 , d = 0x0, Map = 0x0, Cache = 0x0, DCache = 0x0, SrcList = 0x637ff0, Policy = 0x0}, static SortCache = 0x0, List = 0x0} List = 0x1 Stat = { = {_vptr.pkgAcquireStatus = 0x42b570 , d = 0x0, Time = {tv_sec = 1350333443, tv_usec = 263055}, StartTime = {tv_sec = 1350333443, tv_usec = 263055}, LastBytes = 0, CurrentCPS = 0, CurrentBytes = 0, TotalBytes = 1, FetchedBytes = 0, ElapsedTime = 1, TotalItems = 78, CurrentItems = 78, Update = true, MorePulses = false}, ScreenWidth = @0x6307d0, BlankLine = "\000\017c\000\000\000\000\000\330\017c\000\000\000\000\000\330\017c\000\000\000\000\000\330\017c\000\000\000\000\000\330\017c\000\000\000\000\000\330\017c\000\000\000\000\000\330\017c\000\000\000\000\000\330\017c\000\000\000\000\000\330\017c\000\000\000\000\000\330\017c\000\000\000\000\000\330\017c\000\000\000\000\000\330\017c\000\000\000\000\000\330\017c\000\000\000\000\000\330\017c", '\000' , "P", '\000' , "\003\000\000\000\060\000\000\000[\000\000\000n\000\000\000w\000\000\000|", '\000' , "@\227Y\367\377\177\000\000!", '\000' "\370, \255c\000\000\000\000\000\b\000\000\000\000\000\000\000\b\000\000\000\000\000\000\000\265?&\367\377\177\000\000\000\000\000\000\000\000\000\000!", '\000' "\370"..., ID = 1, Quiet = 1} #9 0x00007ffff7afa562 in CommandLine::DispatchArg (this=0x7fffffffde50, Map=, NoMatch=) at contrib/cmndline.cc:339 Res = I = #10 0x000000000040a2ac in main (argc=, argv=0x7fffffffe6c8) at apt-get.cc:3602 Args = {{ShortOpt = 104 'h', LongOpt = 0x428ebe "help", ConfName = 0x428ebe "help", Flags = 0}, {ShortOpt = 118 'v', LongOpt = 0x428be1 "version", ConfName = 0x428be1 "version", Flags = 0}, {ShortOpt = 86 'V', LongOpt = 0x428ec3 "verbose-versions", ConfName = 0x428cd0 "APT::Get::Show-Versions", Flags = 0}, {ShortOpt = 113 'q', LongOpt = 0x428c5a "quiet", ConfName = 0x428c5a "quiet", Flags = 2}, {ShortOpt = 113 'q', LongOpt = 0x428ed4 "silent", ConfName = 0x428c5a "quiet", Flags = 2}, {ShortOpt = 100 'd', LongOpt = 0x428edb "download-only", ConfName = 0x428ee9 "APT::Get::Download-Only", Flags = 0}, {ShortOpt = 98 'b', LongOpt = 0x428f01 "compile", ConfName = 0x428f09 "APT::Get::Compile", Flags = 0}, {ShortOpt = 98 'b', LongOpt = 0x428f1b "build", ConfName = 0x428f09 "APT::Get::Compile", Flags = 0}, {ShortOpt = 115 's', LongOpt = 0x428f21 "simulate", ConfName = 0x428ba0 "APT::Get::Simulate", Flags = 0}, {ShortOpt = 115 's', LongOpt = 0x428f2a "just-print", ConfName = 0x428ba0 "APT::Get::Simulate", Flags = 0}, {ShortOpt = 115 's', LongOpt = 0x428f35 "recon", ConfName = 0x428ba0 "APT::Get::Simulate", Flags = 0}, {ShortOpt = 115 's', LongOpt = 0x428f3b "dry-run", ConfName = 0x428ba0 "APT::Get::Simulate", Flags = 0}, {ShortOpt = 115 's', LongOpt = 0x428f43 "no-act", ConfName = 0x428ba0 "APT::Get::Simulate", Flags = 0}, {ShortOpt = 121 'y', LongOpt = 0x429071 "yes", ConfName = 0x428cb9 "APT::Get::Assume-Yes", Flags = 0}, {ShortOpt = 121 'y', LongOpt = 0x428f4a "assume-yes", ConfName = 0x428cb9 "APT::Get::Assume-Yes", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x428f55 "assume-no", ConfName = 0x428c27 "APT::Get::Assume-No", Flags = 0}, {ShortOpt = 102 'f', LongOpt = 0x428f5f "fix-broken", ConfName = 0x428df7 "APT::Get::Fix-Broken", Flags = 0}, {ShortOpt = 117 'u', LongOpt = 0x428f6a "show-upgraded", ConfName = 0x428f78 "APT::Get::Show-Upgraded", Flags = 0}, {ShortOpt = 109 'm', LongOpt = 0x428f90 "ignore-missing", ConfName = 0x428f9f "APT::Get::Fix-Missing", Flags = 0}, {ShortOpt = 116 't', LongOpt = 0x428fb5 "target-release", ConfName = 0x428e52 "APT::Default-Release", Flags = 1}, {ShortOpt = 116 't', LongOpt = 0x428fc4 "default-release", ConfName = 0x428e52 "APT::Default-Release", Flags = 1}, {ShortOpt = 97 'a', LongOpt = 0x428fd4 "host-architecture", ConfName = 0x428fe6 "APT::Get::Host-Architecture", Flags = 1}, {ShortOpt = 0 '\000', LongOpt = 0x42944e "download", ConfName = 0x428c8f "APT::Get::Download", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x429002 "fix-missing", ConfName = 0x428f9f "APT::Get::Fix-Missing", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x42900e "ignore-hold", ConfName = 0x42901a "APT::Ignore-Hold", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x429278 "upgrade", ConfName = 0x42902b "APT::Get::upgrade", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x42903d "only-upgrade", ConfName = 0x42904a "APT::Get::Only-Upgrade", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x42906b "force-yes", ConfName = 0x429061 "APT::Get::force-yes", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x429075 "print-uris", ConfName = 0x428c60 "APT::Get::Print-URIs", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x429080 "diff-only", ConfName = 0x42908a "APT::Get::Diff-Only", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x42909e "debian-only", ConfName = 0x42908a "APT::Get::Diff-Only", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x4290aa "tar-only", ConfName = 0x4290b3 "APT::Get::Tar-Only", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x4290c6 "dsc-only", ConfName = 0x4290cf "APT::Get::Dsc-Only", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x4290e2 "purge", ConfName = 0x4290e8 "APT::Get::Purge", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x4290f8 "list-cleanup", ConfName = 0x429105 "APT::Get::List-Cleanup", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x42911c "reinstall", ConfName = 0x429126 "APT::Get::ReInstall", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x42913a "trivial-only", ConfName = 0x429147 "APT::Get::Trivial-Only", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x42919e "remove", ConfName = 0x42915e "APT::Get::Remove", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x42916f "only-source", ConfName = 0x428e7f "APT::Get::Only-Source", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x42917b "arch-only", ConfName = 0x429185 "APT::Get::Arch-Only", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x429199 "auto-remove", ConfName = 0x4291a5 "APT::Get::AutomaticRemove", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x4291bf "allow-unauthenticated", ConfName = 0x427780 "APT::Get::AllowUnauthenticated", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x4291d5 "install-recommends", ConfName = 0x4291e8 "APT::Install-Recommends", Flags = 4}, {ShortOpt = 0 '\000', LongOpt = 0x429200 "install-suggests", ConfName = 0x429211 "APT::Install-Suggests", Flags = 4}, {ShortOpt = 0 '\000', LongOpt = 0x429227 "fix-policy", ConfName = 0x428e0c "APT::Get::Fix-Policy-Broken", Flags = 0}, {ShortOpt = 0 '\000', LongOpt = 0x4296ae "solver", ConfName = 0x429232 "APT::Solver", Flags = 1}, {ShortOpt = 99 'c', LongOpt = 0x42923e "config-file", ConfName = 0x0, Flags = 17}, {ShortOpt = 111 'o', LongOpt = 0x42924a "option", ConfName = 0x0, Flags = 33}, {ShortOpt = 0 '\000', LongOpt = 0x0, ConfName = 0x0, Flags = 0}} Cmds = {{Match = 0x429251 "update", Handler = 0x40afc0 }, {Match = 0x429278 "upgrade", Handler = 0x416050 }, {Match = 0x42911e "install", Handler = 0x41a250 }, {Match = 0x42919e "remove", Handler = 0x41a250 }, {Match = 0x4290e2 "purge", Handler = 0x41a250 }, {Match = 0x429258 "autoremove", Handler = 0x41a250 }, {Match = 0x428dd5 "markauto", Handler = 0x40f2e0 }, {Match = 0x428dd3 "unmarkauto", Handler = 0x40f2e0 }, {Match = 0x429263 "dist-upgrade", Handler = 0x415e60 }, {Match = 0x429270 "dselect-upgrade", Handler = 0x415930 }, {Match = 0x429280 "build-dep", Handler = 0x41c610 }, {Match = 0x42928e "clean", Handler = 0x410b90 }, {Match = 0x42928a "autoclean", Handler = 0x4107b0 }, {Match = 0x429294 "check", Handler = 0x40f8d0 }, {Match = 0x429640 "source", Handler = 0x417a80 }, {Match = 0x42944e "download", Handler = 0x412300 }, {Match = 0x429310 "changelog", Handler = 0x413a00 }, {Match = 0x42929a "moo", Handler = 0x40a7f0 }, {Match = 0x428ebe "help", Handler = 0x40a820 }, {Match = 0x0, Handler = 0x0}} CmdL = {ArgList = 0x7fffffffdfb0, Conf = 0x632010, FileList = 0x63abf0}