apbs 1.0.0-2 CmdException in TK callback (Intrepid)
Affects | Status | Importance | Assigned to | Milestone | |
---|---|---|---|---|---|
apbs (Ubuntu) |
Invalid
|
Undecided
|
Unassigned |
Bug Description
Binary package hint: apbs
When trying to 'show' Positive or Negative Isosurface, apbs throws the following Cmdexceptions:
CmdException Exception in Tk callback
Function: <bound method VisualizationGr
Args: ()
Traceback (innermost last):
File "/usr/lib/
return apply(self.func, args)
File "/var/lib/
self.
File "/var/lib/
pymol.
File "/var/lib/
if _self._
CmdException: <pymol.CmdException instance at 0xbf812ec>
CmdException Exception in Tk callback
Function: <bound method VisualizationGr
Args: ()
Traceback (innermost last):
File "/usr/lib/
return apply(self.func, args)
File "/var/lib/
self.
File "/var/lib/
pymol.
File "/var/lib/
if _self._
CmdException: <pymol.CmdException instance at 0xbf810ac>
In addition the following error occurred during apbs run:
Parsed input file.
Got paths for 1 molecules
Reading PQR-format atom data from pymol-generated
asc_getToken: Error occurred (bailing out).
Vio_scanf: Format problem with input.
19190 atoms
Centered at (2.291e+01, 6.646e+01, 1.104e+02)
Net charge 2.00e+00 e
Preparing to run 2 PBE calculations.
I also tried running the apbs 'quicktest':
This executable compiled on Oct 8 2008 at 15:58:43
Parsing input file quicktest...
Vio_ctor2: some error occurred.
Vio_ctor: Vio_ctor2() failed.
Error while opening input file quicktest!
Full description of run is attached. Help on how to resolve this issue is greatly appreciated. Best Regards,
James
Changed in apbs (Ubuntu): | |
status: | Incomplete → Invalid |
I'm closing this. The affected version is very old. Please reopen if you are still affected.