https://launchpad.net/ubuntu/+source/ampliconnoise/1.29-7build1/+build/14874473 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lcy01-amd64-020 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:00:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_161 python-lpbuildd_161 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 13 May 15:07:32 ntpdate[1811]: adjust time server 10.211.37.1 offset 0.000507 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874473 /home/buildd/filecache-default/ccc8a783f4c9fcf0282a95411cd13cfaeeda0fbe Creating target for build PACKAGEBUILD-14874473 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874473 Starting target for build PACKAGEBUILD-14874473 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874473 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14874473 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874473 Updating target for build PACKAGEBUILD-14874473 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 Packages [1004 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe i386 Packages [8572 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [4974 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 Packages [72.9 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [38.9 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 Packages [238 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [136 kB] Fetched 16.0 MB in 5s (3372 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libncursesw5 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libncurses6 libncursesw6 libtinfo6 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential cpp cpp-7 dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgmp10 libgomp1 libgpg-error0 libitm1 libmount1 libmpx2 libncurses5 libncursesw5 libp11-kit0 libperl5.26 libprocps6 libquadmath0 libreadline7 libslang2 libsmartcols1 libsqlite3-0 libss2 libstdc++-7-dev libstdc++6 libtinfo5 libubsan0 libusb-0.1-4 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin perl perl-base perl-modules-5.26 pinentry-curses procps readline-common tzdata util-linux 73 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 49.5 MB of archives. After this operation, 1414 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main i386 base-files i386 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo6 i386 6.1+20180210-2ubuntu2 [84.6 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 bash i386 4.4.18-2ubuntu2 [645 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 bsdutils i386 1:2.31.1-0.4ubuntu4 [62.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg i386 1.19.0.5ubuntu3 [1162 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 libext2fs2 i386 1.44.1-2 [185 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fsprogs i386 1.44.1-2 [428 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-bin i386 6.1+20180210-2ubuntu2 [166 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl-modules-5.26 all 5.26.2-3 [2763 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libperl5.26 i386 5.26.2-3 [3182 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl i386 5.26.2-3 [201 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 perl-base i386 5.26.2-3 [1495 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw6 i386 6.1+20180210-2ubuntu2 [141 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libuuid1 i386 2.31.1-0.4ubuntu4 [20.6 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libblkid1 i386 2.31.1-0.4ubuntu4 [139 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libfdisk1 i386 2.31.1-0.4ubuntu4 [182 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmount1 i386 2.31.1-0.4ubuntu4 [149 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsmartcols1 i386 2.31.1-0.4ubuntu4 [91.8 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 fdisk i386 2.31.1-0.4ubuntu4 [116 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 util-linux i386 2.31.1-0.4ubuntu4 [929 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 base-passwd i386 3.5.45 [47.9 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-base all 6.1+20180210-2ubuntu2 [17.8 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libquadmath0 i386 8.1.0-3ubuntu1 [208 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libitm1 i386 8.1.0-3ubuntu1 [30.8 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-8-base i386 8.1.0-3ubuntu1 [18.4 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgcc1 i386 1:8.1.0-3ubuntu1 [48.1 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmpx2 i386 8.1.0-3ubuntu1 [12.9 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcc1-0 i386 8.1.0-3ubuntu1 [41.8 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libatomic1 i386 8.1.0-3ubuntu1 [9620 B] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgomp1 i386 8.1.0-3ubuntu1 [80.8 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libstdc++6 i386 8.1.0-3ubuntu1 [430 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libapt-pkg5.0 i386 1.7.0~alpha0ubuntu1 [872 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 apt i386 1.7.0~alpha0ubuntu1 [1195 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 mount i386 2.31.1-0.4ubuntu4 [112 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libcap-ng0 i386 0.7.9-1 [11.5 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 libcom-err2 i386 1.44.1-2 [9684 B] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 libgpg-error0 i386 1.31-1 [60.9 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 libss2 i386 1.44.1-2 [11.6 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses5 i386 6.1+20180210-2ubuntu2 [101 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw5 i386 6.1+20180210-2ubuntu2 [128 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo5 i386 6.1+20180210-2ubuntu2 [79.7 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 libgmp10 i386 2:6.1.2+dfsg-3 [246 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 libp11-kit0 i386 0.23.10-2 [179 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 libprocps6 i386 2:3.3.12-3ubuntu2 [32.3 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses6 i386 6.1+20180210-2ubuntu2 [108 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 procps i386 2:3.3.12-3ubuntu2 [224 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 libargon2-0 i386 0~20161029-2 [25.0 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 readline-common all 7.0-5 [52.2 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 libreadline7 i386 7.0-5 [127 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 libslang2 i386 2.3.2-1ubuntu1 [426 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsqlite3-0 i386 3.23.1-1 [536 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 tzdata all 2018e-1 [188 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-common i386 2.30-17ubuntu1 [193 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils i386 2.30-17ubuntu1 [3392 B] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-i686-linux-gnu i386 2.30-17ubuntu1 [2028 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 libbinutils i386 2.30-17ubuntu1 [544 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libasan4 i386 7.3.0-19ubuntu1 [361 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libubsan0 i386 7.3.0-19ubuntu1 [141 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcilkrts5 i386 7.3.0-19ubuntu1 [47.3 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 g++-7 i386 7.3.0-19ubuntu1 [7815 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-7 i386 7.3.0-19ubuntu1 [7692 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libstdc++-7-dev i386 7.3.0-19ubuntu1 [1505 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgcc-7-dev i386 7.3.0-19ubuntu1 [2395 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 cpp-7 i386 7.3.0-19ubuntu1 [6965 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-7-base i386 7.3.0-19ubuntu1 [18.8 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp i386 4:7.3.0-3ubuntu3 [27.6 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc i386 4:7.3.0-3ubuntu3 [5268 B] Get:68 http://ftpmaster.internal/ubuntu cosmic/main i386 g++ i386 4:7.3.0-3ubuntu3 [1596 B] Get:69 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main i386 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main i386 build-essential i386 12.5ubuntu2 [4728 B] Get:72 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fslibs i386 1.44.1-2 [2704 B] Get:73 http://ftpmaster.internal/ubuntu cosmic/main i386 libcomerr2 i386 1.44.1-2 [2692 B] Get:74 http://ftpmaster.internal/ubuntu cosmic/main i386 libusb-0.1-4 i386 2:0.1.12-32 [17.9 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 linux-libc-dev i386 4.15.0-21.22 [1007 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 pinentry-curses i386 1.1.0-1build1 [37.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 49.5 MB in 2s (26.3 MB/s) (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_i386.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:i386. (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-2ubuntu2_i386.deb ... Unpacking libtinfo6:i386 (6.1+20180210-2ubuntu2) ... Setting up libtinfo6:i386 (6.1+20180210-2ubuntu2) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_i386.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu4_i386.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu4) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu4) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_i386.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../libext2fs2_1.44.1-2_i386.deb ... Unpacking libext2fs2:i386 (1.44.1-2) over (1.44.1-1) ... Setting up libext2fs2:i386 (1.44.1-2) ... (Reading database ... 12641 files and directories currently installed.) 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Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Sun May 13 15:07:59 UTC 2018. Universal Time is now: Sun May 13 15:07:59 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up linux-libc-dev:i386 (4.15.0-21.22) ... Setting up mount (2.31.1-0.4ubuntu4) ... Setting up perl-modules-5.26 (5.26.2-3) ... Setting up libprocps6:i386 (2:3.3.12-3ubuntu2) ... Setting up libargon2-0:i386 (0~20161029-2) ... Setting up gcc-7-base:i386 (7.3.0-19ubuntu1) ... Setting up binutils-common:i386 (2.30-17ubuntu1) ... Setting up libmpx2:i386 (8.1.0-3ubuntu1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:i386 (5.26.2-3) ... Setting up libsqlite3-0:i386 (3.23.1-1) ... Setting up pinentry-curses (1.1.0-1build1) ... Setting up libcomerr2:i386 (1.44.1-2) ... Setting up libslang2:i386 (2.3.2-1ubuntu1) ... Setting up libncurses6:i386 (6.1+20180210-2ubuntu2) ... Setting up libusb-0.1-4:i386 (2:0.1.12-32) ... 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RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14874473 i386 cosmic-proposed -c chroot:build-PACKAGEBUILD-14874473 --arch=i386 --dist=cosmic-proposed --nolog ampliconnoise_1.29-7build1.dsc Initiating build PACKAGEBUILD-14874473 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-124-generic #148-Ubuntu SMP Wed May 2 13:00:18 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-020.buildd +==============================================================================+ | ampliconnoise 1.29-7build1 (i386) 13 May 2018 15:08 | +==============================================================================+ Package: ampliconnoise Version: 1.29-7build1 Source Version: 1.29-7build1 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/ampliconnoise-DtO9KE/ampliconnoise-1.29' with '<>' I: NOTICE: Log filtering will replace 'build/ampliconnoise-DtO9KE' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14874473/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- ampliconnoise_1.29-7build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-52hcip/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-52hcip/apt_archive ./ InRelease Get:2 copy:/<>/resolver-52hcip/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-52hcip/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-52hcip/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-52hcip/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (230 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-52hcip/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), libgsl-dev, libopenmpi-dev Filtered Build-Depends: debhelper (>= 10), libgsl-dev, libopenmpi-dev dpkg-deb: building package 'sbuild-build-depends-ampliconnoise-dummy' in '/<>/resolver-kEjBwu/apt_archive/sbuild-build-depends-ampliconnoise-dummy.deb'. Ign:1 copy:/<>/resolver-kEjBwu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-kEjBwu/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-kEjBwu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-kEjBwu/apt_archive ./ Sources [229 B] Get:5 copy:/<>/resolver-kEjBwu/apt_archive ./ Packages [546 B] Fetched 2894 B in 0s (211 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install ampliconnoise build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libcroco3 libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu60 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsm-infinipath1 librdmacm1 libsigsegv2 libssl1.0.0 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser opencl-icd gfortran keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base ibverbs-providers intltool-debian libarchive-zip-perl libbsd0 libcroco3 libedit2 libevent-2.1-6 libevent-core-2.1-6 libevent-pthreads-2.1-6 libfabric1 libfile-stripnondeterminism-perl libglib2.0-0 libgsl-dev libgsl23 libgslcblas0 libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libicu60 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpmix2 libpsm-infinipath1 librdmacm1 libsigsegv2 libssl1.0.0 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf sbuild-build-depends-ampliconnoise-dummy 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 26.6 MB of archives. After this operation, 104 MB of additional disk space will be used. Get:1 copy:/<>/resolver-kEjBwu/apt_archive ./ sbuild-build-depends-ampliconnoise-dummy 0.invalid.0 [876 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libbsd0 i386 0.8.7-1 [44.7 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 groff-base i386 1.22.3-10 [1169 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 libpipeline1 i386 1.5.0-1 [27.2 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 man-db i386 2.8.3-2 [1028 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic-mgc i386 1:5.33-2 [193 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic1 i386 1:5.33-2 [76.6 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 file i386 1:5.33-2 [22.8 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-0 i386 2.56.1-2ubuntu1 [1232 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu60 i386 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1.0.2n-1ubuntu5 [913 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 openssh-client i386 1:7.7p1-2 [680 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 m4 i386 1.4.18-1 [196 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 autoconf all 2.69-11 [322 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 autopoint all 0.19.8.1-6build1 [412 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libtool all 2.4.6-2.1 [195 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-autoreconf all 17 [15.8 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive-zip-perl all 1.60-1 [83.9 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 libfile-stripnondeterminism-perl all 0.041-1 [15.3 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-strip-nondeterminism all 0.041-1 [5188 B] Get:35 http://ftpmaster.internal/ubuntu cosmic/main i386 libcroco3 i386 0.6.12-2 [87.7 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext i386 0.19.8.1-6build1 [902 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 po-debconf all 1.0.20 [232 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main i386 debhelper all 11.2.1ubuntu1 [906 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 libnl-3-200 i386 3.2.29-0ubuntu3 [55.9 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main i386 libnl-route-3-200 i386 3.2.29-0ubuntu3 [154 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libibverbs1 i386 18.0-1 [51.8 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 ibverbs-providers i386 18.0-1 [186 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 libevent-2.1-6 i386 2.1.8-stable-4build1 [146 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 libevent-core-2.1-6 i386 2.1.8-stable-4build1 [93.6 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main i386 libevent-pthreads-2.1-6 i386 2.1.8-stable-4build1 [5408 B] Get:47 http://ftpmaster.internal/ubuntu cosmic/universe i386 libpsm-infinipath1 i386 3.3+20.604758e7-5 [182 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 librdmacm1 i386 18.0-1 [69.9 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/universe i386 libfabric1 i386 1.5.3-1 [336 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgslcblas0 i386 2.4+dfsg-6 [80.5 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgsl23 i386 2.4+dfsg-6 [802 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/universe i386 libgsl-dev i386 2.4+dfsg-6 [1042 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libltdl7 i386 2.4.6-2.1 [40.5 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libltdl-dev i386 2.4.6-2.1 [164 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc5 i386 1.11.10-1 [115 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 libpciaccess0 i386 0.14-1 [20.2 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main i386 ocl-icd-libopencl1 i386 2.2.11-1ubuntu1 [31.3 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc-plugins i386 1.11.10-1 [13.2 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/universe i386 libpmix2 i386 2.1.1~rc1-4 [361 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libopenmpi3 i386 3.0.1.real-4 [2105 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 openmpi-common all 3.0.1.real-4 [143 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 openmpi-bin i386 3.0.1.real-4 [94.3 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 libnuma-dev i386 2.0.11-2.2 [34.4 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/universe i386 libhwloc-dev i386 1.11.10-1 [179 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libibverbs-dev i386 18.0-1 [114 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 libopenmpi-dev i386 3.0.1.real-4 [821 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.6 MB in 1s (30.5 MB/s) Selecting previously unselected package libbsd0:i386. (Reading database ... 12656 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.7-1_i386.deb ... Unpacking libbsd0:i386 (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_i386.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_i386.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.0-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_i386.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.33-2_i386.deb ... Unpacking libmagic-mgc (1:5.33-2) ... Selecting previously unselected package libmagic1:i386. 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Setting up libpipeline1:i386 (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:i386 (0.8.7-1) ... Setting up libkrb5support0:i386 (1.16-2build1) ... Setting up libxml2:i386 (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libmagic-mgc (1:5.33-2) ... Setting up libmagic1:i386 (1:5.33-2) ... Setting up libcroco3:i386 (0.6.12-2) ... Setting up libpsm-infinipath1 (3.3+20.604758e7-5) ... update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/i386-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode Setting up libevent-pthreads-2.1-6:i386 (2.1.8-stable-4build1) ... Setting up openmpi-common (3.0.1.real-4) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up libltdl7:i386 (2.4.6-2.1) ... Setting up libpciaccess0:i386 (0.14-1) ... Setting up libnuma-dev:i386 (2.0.11-2.2) ... Setting up ocl-icd-libopencl1:i386 (2.2.11-1ubuntu1) ... Setting up libkeyutils1:i386 (1.5.9-9.2ubuntu3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:i386 (3.2.29-0ubuntu3) ... Setting up libgslcblas0:i386 (2.4+dfsg-6) ... Setting up autopoint (0.19.8.1-6build1) ... Setting up libfile-stripnondeterminism-perl (0.041-1) ... Setting up libk5crypto3:i386 (1.16-2build1) ... Setting up libltdl-dev:i386 (2.4.6-2.1) ... Setting up libgsl23:i386 (2.4+dfsg-6) ... Setting up gettext (0.19.8.1-6build1) ... Setting up libgsl-dev (2.4+dfsg-6) ... Setting up libnl-route-3-200:i386 (3.2.29-0ubuntu3) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-2) ... Setting up libhwloc5:i386 (1.11.10-1) ... Setting up libhwloc-plugins (1.11.10-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:i386 (1.16-2build1) ... Setting up libtool (2.4.6-2.1) ... Setting up libibverbs1:i386 (18.0-1) ... Setting up po-debconf (1.0.20) ... Setting up libhwloc-dev:i386 (1.11.10-1) ... Setting up libpmix2:i386 (2.1.1~rc1-4) ... Setting up librdmacm1:i386 (18.0-1) ... Setting up libgssapi-krb5-2:i386 (1.16-2build1) ... Setting up ibverbs-providers:i386 (18.0-1) ... Setting up openssh-client (1:7.7p1-2) ... Setting up libibverbs-dev:i386 (18.0-1) ... Setting up libfabric1 (1.5.3-1) ... Setting up libopenmpi3:i386 (3.0.1.real-4) ... Setting up openmpi-bin (3.0.1.real-4) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: error: no alternatives for mpi update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:i386 (3.0.1.real-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.041-1) ... Setting up debhelper (11.2.1ubuntu1) ... Setting up sbuild-build-depends-ampliconnoise-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-124-generic amd64 (i686) Toolchain package versions: binutils_2.30-17ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-19ubuntu1 gcc-7_7.3.0-19ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-19ubuntu1 libstdc++6_8.1.0-3ubuntu1 linux-libc-dev_4.15.0-21.22 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha0ubuntu1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-17ubuntu1 binutils-common_2.30-17ubuntu1 binutils-i686-linux-gnu_2.30-17ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.31.1-0.4ubuntu4 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-19ubuntu1 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.2.1ubuntu1 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.041-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 e2fslibs_1.44.1-2 e2fsprogs_1.44.1-2 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu4 file_1:5.33-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-19ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-19ubuntu1 gcc-7-base_7.3.0-19ubuntu1 gcc-8-base_8.1.0-3ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 ibverbs-providers_18.0-1 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5 libapt-pkg5.0_1.7.0~alpha0ubuntu1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-2 libasan4_7.3.0-19ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-3ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-17ubuntu1 libblkid1_2.31.1-0.4ubuntu4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-3ubuntu1 libcilkrts5_7.3.0-19ubuntu1 libcom-err2_1.44.1-2 libcomerr2_1.44.1-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libedit2_3.1-20170329-1build1 libevent-2.1-6_2.1.8-stable-4build1 libevent-core-2.1-6_2.1.8-stable-4build1 libevent-pthreads-2.1-6_2.1.8-stable-4build1 libext2fs2_1.44.1-2 libfabric1_1.5.3-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.041-1 libgcc-7-dev_7.3.0-19ubuntu1 libgcc1_1:8.1.0-3ubuntu1 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-3ubuntu1 libgpg-error0_1.31-1 libgsl-dev_2.4+dfsg-6 libgsl23_2.4+dfsg-6 libgslcblas0_2.4+dfsg-6 libgssapi-krb5-2_1.16-2build1 libhogweed4_3.4-1 libhwloc-dev_1.11.10-1 libhwloc-plugins_1.11.10-1 libhwloc5_1.11.10-1 libibverbs-dev_18.0-1 libibverbs1_18.0-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-3ubuntu1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu3 libkmod2_24-1ubuntu3 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 libltdl-dev_2.4.6-2.1 libltdl7_2.4.6-2.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-2 libmagic1_1:5.33-2 libmount1_2.31.1-0.4ubuntu4 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.1.0-3ubuntu1 libncurses5_6.1+20180210-2ubuntu2 libncurses6_6.1+20180210-2ubuntu2 libncursesw5_6.1+20180210-2ubuntu2 libncursesw6_6.1+20180210-2ubuntu2 libnettle6_3.4-1 libnl-3-200_3.2.29-0ubuntu3 libnl-route-3-200_3.2.29-0ubuntu3 libnpth0_1.5-3 libnuma-dev_2.0.11-2.2 libnuma1_2.0.11-2.2 libopenmpi-dev_3.0.1.real-4 libopenmpi3_3.0.1.real-4 libp11-kit0_0.23.10-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpciaccess0_0.14-1 libpcre3_2:8.39-9 libperl5.26_5.26.2-3 libpipeline1_1.5.0-1 libpmix2_2.1.1~rc1-4 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu2 libpsm-infinipath1_3.3+20.604758e7-5 libquadmath0_8.1.0-3ubuntu1 librdmacm1_18.0-1 libreadline7_7.0-5 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.31.1-0.4ubuntu4 libsqlite3-0_3.23.1-1 libss2_1.44.1-2 libssl1.0.0_1.0.2n-1ubuntu5 libssl1.1_1.1.0g-2ubuntu4 libstdc++-7-dev_7.3.0-19ubuntu1 libstdc++6_8.1.0-3ubuntu1 libsystemd0_237-3ubuntu10 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-2ubuntu2 libtinfo6_6.1+20180210-2ubuntu2 libtool_2.4.6-2.1 libubsan0_7.3.0-19ubuntu1 libudev1_237-3ubuntu10 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.31.1-0.4ubuntu4 libxml2_2.9.4+dfsg1-6.1ubuntu1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-21.22 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu4 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-2ubuntu2 ncurses-bin_6.1+20180210-2ubuntu2 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_3.0.1.real-4 openmpi-common_3.0.1.real-4 openssh-client_1:7.7p1-2 openssl_1.1.0g-2ubuntu4 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-3 perl-base_5.26.2-3 perl-modules-5.26_5.26.2-3 pinentry-curses_1.1.0-1build1 pkgbinarymangler_138 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu2 readline-common_7.0-5 sbuild-build-depends-ampliconnoise-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10 systemd-sysv_237-3ubuntu10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu4 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun May 13 15:06:47 2018 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ampliconnoise_1.29-7build1.dsc dpkg-source: info: extracting ampliconnoise in ampliconnoise-1.29 dpkg-source: info: unpacking ampliconnoise_1.29.orig.tar.gz dpkg-source: info: unpacking ampliconnoise_1.29-7build1.debian.tar.xz dpkg-source: info: applying fix-path-for-data.patch dpkg-source: info: applying fix-segfault-on-non-fasta-input.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying clang-ftbfs.patch dpkg-source: info: applying mayhem.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14874473 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14874473 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14874473 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ampliconnoise dpkg-buildpackage: info: source version 1.29-7build1 dpkg-buildpackage: info: source distribution cosmic dpkg-source --before-build ampliconnoise-1.29 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_auto_clean make -j4 -Oline clean make[1]: Entering directory '/<>' (cd FCluster && make clean) make[2]: Entering directory '/<>/FCluster' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/FCluster' make[2]: Entering directory '/<>/FCluster' rm -rf *o FCluster make[2]: Leaving directory '/<>/FCluster' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd FastaUnique && make clean) make[2]: Entering directory '/<>/FastaUnique' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/FastaUnique' make[2]: Entering directory '/<>/FastaUnique' rm -rf *.o FastaUnique make[2]: Leaving directory '/<>/FastaUnique' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd NDist && make clean) make[2]: Entering directory '/<>/NDist' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/NDist' make[2]: Entering directory '/<>/NDist' rm -rf *.o NDist make[2]: Leaving directory '/<>/NDist' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd PyroDist && make clean) make[2]: Entering directory '/<>/PyroDist' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/PyroDist' make[2]: Entering directory '/<>/PyroDist' rm -rf *.o PyroDist make[2]: Leaving directory '/<>/PyroDist' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd PyroNoise && make clean) make[2]: Entering directory '/<>/PyroNoise' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/PyroNoise' make[2]: Entering directory '/<>/PyroNoise' rm -rf *.o PyroNoise make[2]: Leaving directory '/<>/PyroNoise' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd PyroNoiseM && make clean) make[2]: Entering directory '/<>/PyroNoiseM' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/PyroNoiseM' make[2]: Entering directory '/<>/PyroNoiseM' rm -rf *.o PyroNoiseM make[2]: Leaving directory '/<>/PyroNoiseM' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd PyroNoiseA && make clean) make[2]: Entering directory '/<>/PyroNoiseA' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/PyroNoiseA' make[2]: Entering directory '/<>/PyroNoiseA' rm -rf *.o PyroNoiseA make[2]: Leaving directory '/<>/PyroNoiseA' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd SeqDist && make clean) make[2]: Entering directory '/<>/SeqDist' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/SeqDist' make[2]: Entering directory '/<>/SeqDist' rm -rf *.o SeqDist make[2]: Leaving directory '/<>/SeqDist' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd SeqNoise && make clean) make[2]: Entering directory '/<>/SeqNoise' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/SeqNoise' make[2]: Entering directory '/<>/SeqNoise' rm -rf *.o SeqNoise make[2]: Leaving directory '/<>/SeqNoise' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd SplitClusterEven && make clean) make[2]: Entering directory '/<>/SplitClusterEven' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/SplitClusterEven' make[2]: Entering directory '/<>/SplitClusterEven' rm -rf *.o SplitClusterEven make[2]: Leaving directory '/<>/SplitClusterEven' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd SplitClusterClust && make clean) make[2]: Entering directory '/<>/SplitClusterClust' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/SplitClusterClust' make[2]: Entering directory '/<>/SplitClusterClust' rm -rf *.o SplitClusterClust make[2]: Leaving directory '/<>/SplitClusterClust' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd Perseus && make clean) make[2]: Entering directory '/<>/Perseus' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/Perseus' make[2]: Entering directory '/<>/Perseus' rm -rf *.o Perseus make[2]: Leaving directory '/<>/Perseus' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd PerseusD && make clean) make[2]: Entering directory '/<>/PerseusD' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/PerseusD' make[2]: Entering directory '/<>/PerseusD' rm -rf *.o PerseusD make[2]: Leaving directory '/<>/PerseusD' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd bin && rm -rf *) make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean rm -f *.o rm -f *.1 make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j4 -Oline make[1]: Entering directory '/<>' (cd FCluster && CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/<>/FCluster' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/FCluster' make[2]: Entering directory '/<>/FCluster' cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c FCluster.c FCluster.c:223:1: warning: return type defaults to ‘int’ [-Wimplicit-int] UpdateMinCacheForMarkedRows(struct t_Min* asMin,float** aafDistMatrix,int nN) ^~~~~~~~~~~~~~~~~~~~~~~~~~~ FCluster.c: In function ‘UpdateMinCacheForMarkedRows’: FCluster.c:230:13: warning: implicit declaration of function ‘UpdateMinCacheForRow’; did you mean ‘UpdateMinCacheForMarkedRows’? [-Wimplicit-function-declaration] UpdateMinCacheForRow(asMin,i,aafDistMatrix); ^~~~~~~~~~~~~~~~~~~~ UpdateMinCacheForMarkedRows FCluster.c: At top level: FCluster.c:237:1: warning: return type defaults to ‘int’ [-Wimplicit-int] UpdateMinCacheForRow(struct t_Min* asMin,int i,float** aafDistMatrix) ^~~~~~~~~~~~~~~~~~~~ FCluster.c: In function ‘readDistanceMatrix’: FCluster.c:356:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ FCluster.c:390:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ FCluster.c:420:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/FCluster' make[2]: Entering directory '/<>/FCluster' linking... make[2]: Leaving directory '/<>/FCluster' make[2]: Entering directory '/<>/FCluster' cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o FCluster FCluster.o -lm make[2]: Leaving directory '/<>/FCluster' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd FastaUnique && CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/<>/FastaUnique' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/FastaUnique' make[2]: Entering directory '/<>/FastaUnique' cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c FastaUnique.c make[2]: Leaving directory '/<>/FastaUnique' make[2]: Entering directory '/<>/FastaUnique' linking... make[2]: Leaving directory '/<>/FastaUnique' make[2]: Entering directory '/<>/FastaUnique' cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o FastaUnique FastaUnique.o -lm make[2]: Leaving directory '/<>/FastaUnique' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd NDist && CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/<>/NDist' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/NDist' make[2]: Entering directory '/<>/NDist' mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c NDist.c NDist.c: In function ‘readData’: NDist.c:707:52: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]); ^~~~~~~ make[2]: Leaving directory '/<>/NDist' make[2]: Entering directory '/<>/NDist' linking... make[2]: Leaving directory '/<>/NDist' make[2]: Entering directory '/<>/NDist' mpicc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o NDist NDist.o -lm make[2]: Leaving directory '/<>/NDist' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd PyroDist && CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/<>/PyroDist' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/PyroDist' make[2]: Entering directory '/<>/PyroDist' mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroDist.c PyroDist.c: In function ‘readData’: PyroDist.c:403:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroDist.c:433:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroDist.c: In function ‘initLookUp’: PyroDist.c:816:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroDist.c:825:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/PyroDist' make[2]: Entering directory '/<>/PyroDist' linking... make[2]: Leaving directory '/<>/PyroDist' make[2]: Entering directory '/<>/PyroDist' mpicc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PyroDist PyroDist.o -lm make[2]: Leaving directory '/<>/PyroDist' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd PyroNoise && CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/<>/PyroNoise' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/PyroNoise' make[2]: Entering directory '/<>/PyroNoise' mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroNoise.c PyroNoise.c: In function ‘writeCentroids’: PyroNoise.c:2073:21: warning: too many arguments for format [-Wformat-extra-args] fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroNoise.c: In function ‘readData’: PyroNoise.c:549:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroNoise.c:579:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroNoise.c: In function ‘initLookUp’: PyroNoise.c:963:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroNoise.c:972:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/PyroNoise' make[2]: Entering directory '/<>/PyroNoise' linking... make[2]: Leaving directory '/<>/PyroNoise' make[2]: Entering directory '/<>/PyroNoise' mpicc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PyroNoise PyroNoise.o -lm make[2]: Leaving directory '/<>/PyroNoise' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd SeqDist && CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/<>/SeqDist' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/SeqDist' make[2]: Entering directory '/<>/SeqDist' mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SeqDist.c SeqDist.c: In function ‘readData’: SeqDist.c:854:52: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]); ^~~~~~~ SeqDist.c: In function ‘initLookUp’: SeqDist.c:887:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/SeqDist' make[2]: Entering directory '/<>/SeqDist' linking... make[2]: Leaving directory '/<>/SeqDist' make[2]: Entering directory '/<>/SeqDist' mpicc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o SeqDist SeqDist.o -lm make[2]: Leaving directory '/<>/SeqDist' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd PyroNoiseM && CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/<>/PyroNoiseM' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/PyroNoiseM' make[2]: Entering directory '/<>/PyroNoiseM' mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroNoiseM.c PyroNoiseM.c: In function ‘writeCentroids’: PyroNoiseM.c:2139:21: warning: too many arguments for format [-Wformat-extra-args] fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroNoiseM.c: In function ‘readData’: PyroNoiseM.c:602:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroNoiseM.c:632:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroNoiseM.c: In function ‘initLookUp’: PyroNoiseM.c:1029:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroNoiseM.c:1038:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/PyroNoiseM' make[2]: Entering directory '/<>/PyroNoiseM' linking... make[2]: Leaving directory '/<>/PyroNoiseM' make[2]: Entering directory '/<>/PyroNoiseM' mpicc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PyroNoiseM PyroNoiseM.o -lm make[2]: Leaving directory '/<>/PyroNoiseM' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd PyroNoiseA && CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/<>/PyroNoiseA' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/PyroNoiseA' make[2]: Entering directory '/<>/PyroNoiseA' mpicc -O3 -c PyroNoiseA.c PyroNoiseA.c: In function ‘writeCentroids’: PyroNoiseA.c:2169:21: warning: too many arguments for format [-Wformat-extra-args] fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroNoiseA.c: In function ‘readData’: PyroNoiseA.c:601:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroNoiseA.c:662:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroNoiseA.c: In function ‘initLookUp’: PyroNoiseA.c:1059:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PyroNoiseA.c:1068:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/PyroNoiseA' make[2]: Entering directory '/<>/PyroNoiseA' linking... make[2]: Leaving directory '/<>/PyroNoiseA' make[2]: Entering directory '/<>/PyroNoiseA' mpicc -o PyroNoiseA PyroNoiseA.o -lm -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/PyroNoiseA' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd SeqNoise && CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/<>/SeqNoise' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/SeqNoise' make[2]: Entering directory '/<>/SeqNoise' mpicc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SeqNoise.c SeqNoise.c: In function ‘main’: SeqNoise.c:120:25: warning: too many arguments for format [-Wformat-extra-args] if(bVerbose){printf("%d: Broadcast distance matrix\n", rank, nSize, nPacket); fflush(stdout);} ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqNoise.c: In function ‘readData’: SeqNoise.c:652:52: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]); ^~~~~~~ SeqNoise.c: In function ‘initLookUp’: SeqNoise.c:2134:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqNoise.c: In function ‘outputMapping’: SeqNoise.c:2370:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine,BIG_LINE_LENGTH,ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqNoise.c: In function ‘readDistanceMatrix’: SeqNoise.c:2458:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SeqNoise.c:2488:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/SeqNoise' make[2]: Entering directory '/<>/SeqNoise' linking... make[2]: Leaving directory '/<>/SeqNoise' make[2]: Entering directory '/<>/SeqNoise' mpicc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o SeqNoise SeqNoise.o -lm make[2]: Leaving directory '/<>/SeqNoise' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd SplitClusterEven && CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/<>/SplitClusterEven' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/SplitClusterEven' make[2]: Entering directory '/<>/SplitClusterEven' cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SplitClusterEven.c SplitClusterEven.c: In function ‘readMapFile’: SplitClusterEven.c:681:19: warning: too many arguments for format [-Wformat-extra-args] fprintf(stderr, "Failed to open map file\n", szMapFile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterEven.c: In function ‘readData’: SplitClusterEven.c:501:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterEven.c:523:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterEven.c: In function ‘readMapFile’: SplitClusterEven.c:647:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, BIG_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/SplitClusterEven' make[2]: Entering directory '/<>/SplitClusterEven' linking... make[2]: Leaving directory '/<>/SplitClusterEven' make[2]: Entering directory '/<>/SplitClusterEven' cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o SplitClusterEven SplitClusterEven.o -lm make[2]: Leaving directory '/<>/SplitClusterEven' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd SplitClusterClust && CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/<>/SplitClusterClust' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/SplitClusterClust' make[2]: Entering directory '/<>/SplitClusterClust' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SplitClusterClust.c SplitClusterClust.c: In function ‘readMapFile’: SplitClusterClust.c:316:19: warning: too many arguments for format [-Wformat-extra-args] fprintf(stderr, "Failed to open map file\n", szMapFile); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterClust.c: In function ‘readData’: SplitClusterClust.c:188:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterClust.c:210:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SplitClusterClust.c: In function ‘readMapFile’: SplitClusterClust.c:282:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, BIG_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/SplitClusterClust' make[2]: Entering directory '/<>/SplitClusterClust' linking... make[2]: Leaving directory '/<>/SplitClusterClust' make[2]: Entering directory '/<>/SplitClusterClust' gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o SplitClusterClust SplitClusterClust.o -lm make[2]: Leaving directory '/<>/SplitClusterClust' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd Perseus && CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/<>/Perseus' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/Perseus' make[2]: Entering directory '/<>/Perseus' cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c Perseus.c Perseus.c: In function ‘readData’: Perseus.c:856:52: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]); ^~~~~~~ Perseus.c: In function ‘initLookUp’: Perseus.c:1248:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Perseus.c: In function ‘calcLoonIndex’: Perseus.c:1639:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(szCommand); ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/Perseus' make[2]: Entering directory '/<>/Perseus' linking... make[2]: Leaving directory '/<>/Perseus' make[2]: Entering directory '/<>/Perseus' cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o Perseus Perseus.o -lm -lgsl -lgslcblas make[2]: Leaving directory '/<>/Perseus' make[1]: Leaving directory '/<>' make[1]: Entering directory '/<>' (cd PerseusD && CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make) make[2]: Entering directory '/<>/PerseusD' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. make[2]: Leaving directory '/<>/PerseusD' make[2]: Entering directory '/<>/PerseusD' cc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PerseusD.c PerseusD.c: In function ‘readData’: PerseusD.c:908:52: warning: implicit declaration of function ‘toupper’ [-Wimplicit-function-declaration] ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]); ^~~~~~~ PerseusD.c: In function ‘initLookUp’: PerseusD.c:1300:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(szLine, MAX_LINE_LENGTH, ifp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ PerseusD.c: In function ‘calcLoonIndex’: PerseusD.c:1650:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result] system(szCommand); ^~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>/PerseusD' make[2]: Entering directory '/<>/PerseusD' linking... make[2]: Leaving directory '/<>/PerseusD' make[2]: Entering directory '/<>/PerseusD' cc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o PerseusD PerseusD.o -lm -lgsl -lgslcblas make[2]: Leaving directory '/<>/PerseusD' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' make install make[2]: Entering directory '/<>' cp FCluster/FCluster bin cp FastaUnique/FastaUnique bin cp NDist/NDist bin cp PyroDist/PyroDist bin cp PyroNoise/PyroNoise bin cp PyroNoiseM/PyroNoiseM bin cp PyroNoiseA/PyroNoiseA bin cp SeqDist/SeqDist bin cp SeqNoise/SeqNoise bin cp SplitClusterEven/SplitClusterEven bin cp SplitClusterClust/SplitClusterClust bin cp Perseus/Perseus bin cp PerseusD/PerseusD bin make[2]: Leaving directory '/<>' dh_install bin/* /usr/bin dh_install Data/* /usr/share/ampliconnoise/Data/ dh_install Scripts/* /usr/share/ampliconnoise/Scripts/ make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' debian/ampliconnoise.pod pod2man -c AmpliconNoise Documentation debian/ampliconnoise.pod > ampliconnoise.1 dh_installman ampliconnoise.1 ( for f in bin/* ; do \ ln -s ampliconnoise.1 debian/ampliconnoise/usr/share/man/man1/`basename "$f"`.1 ; \ done ) make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ampliconnoise/usr/bin/Perseus debian/ampliconnoise/usr/bin/PerseusD were not linked against libgslcblas.so.0 (they use none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package ampliconnoise: unused substitution variable ${perl:Depends} dpkg-gencontrol: warning: package ampliconnoise: unused substitution variable ${perl:Depends} dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 138 INFO: pkgstriptranslations version 138 pkgstriptranslations: processing ampliconnoise (in debian/ampliconnoise); do_strip: , oemstrip: pkgstriptranslations: processing ampliconnoise-dbgsym (in debian/.debhelper/ampliconnoise/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/ampliconnoise/DEBIAN/control, package ampliconnoise, directory debian/ampliconnoise pkgstripfiles: Truncating usr/share/doc/ampliconnoise/changelog.Debian.gz to topmost ten records pkgstripfiles: processing control file: debian/.debhelper/ampliconnoise/dbgsym-root/DEBIAN/control, package ampliconnoise-dbgsym, directory debian/.debhelper/ampliconnoise/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package ampliconnoise-dbgsym ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package ampliconnoise ... pkgstripfiles: No PNG files. dpkg-deb: building package 'ampliconnoise-dbgsym' in 'debian/.debhelper/scratch-space/build-ampliconnoise/ampliconnoise-dbgsym_1.29-7build1_i386.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'ampliconnoise' in '../ampliconnoise_1.29-7build1_i386.deb'. Renaming ampliconnoise-dbgsym_1.29-7build1_i386.deb to ampliconnoise-dbgsym_1.29-7build1_i386.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../ampliconnoise_1.29-7build1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build ampliconnoise-1.29 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180513-1508 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ ampliconnoise_1.29-7build1_i386.changes: ---------------------------------------- Format: 1.8 Date: Sun, 13 May 2018 15:01:41 +0000 Source: ampliconnoise Binary: ampliconnoise Architecture: i386 Version: 1.29-7build1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: ampliconnoise - removal of noise from 454 sequenced PCR amplicons Changes: ampliconnoise (1.29-7build1) cosmic; urgency=medium . * No-change rebuild for dune openmpi soname change. Checksums-Sha1: c2c9e2bb435cd3eb701382f33e59ddeea34bcce2 267816 ampliconnoise-dbgsym_1.29-7build1_i386.ddeb f4b98de86a9862e330450090d473c26dd0e0eabe 6405 ampliconnoise_1.29-7build1_i386.buildinfo d5afc725b0203b7a607b1de6c491d2bb060fb0cf 468812 ampliconnoise_1.29-7build1_i386.deb Checksums-Sha256: 7d4aeb3fe7c662292bd6f81f3edd43fe0ee0863264f2575a7876b9e0ef87f064 267816 ampliconnoise-dbgsym_1.29-7build1_i386.ddeb 730a455b682f302da949e5cb17993f33d0aca1409c70aed3ea811dec93766b50 6405 ampliconnoise_1.29-7build1_i386.buildinfo 5a78e482182a8a517006ba5a1cb44b8776a0f291d153aadd6cf4f07ee9bbd57c 468812 ampliconnoise_1.29-7build1_i386.deb Files: bb9b0e9fa86c4269313de18ab3bf29b4 267816 debug optional ampliconnoise-dbgsym_1.29-7build1_i386.ddeb ad501c10262ecf31d83a60185ddb1c49 6405 science optional ampliconnoise_1.29-7build1_i386.buildinfo e62e916bd63fd1a1864cd063c52b2574 468812 science optional ampliconnoise_1.29-7build1_i386.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ ampliconnoise_1.29-7build1_i386.deb ----------------------------------- new debian package, version 2.0. size 468812 bytes: control archive=2580 bytes. 985 bytes, 23 lines control 4898 bytes, 67 lines md5sums Package: ampliconnoise Version: 1.29-7build1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1346 Depends: libc6 (>= 2.4), libgsl23, libgslcblas0, libopenmpi3, mafft Recommends: openmpi-bin Section: science Priority: optional Homepage: http://code.google.com/p/ampliconnoise/ Description: removal of noise from 454 sequenced PCR amplicons AmpliconNoise is a package of applications to clean up high-throughput sequence data. It consists of three main parts: . Pyronoise - does flowgram-based clustering to spot misreads SeqNoise - removes PCR point mutations Perseus - removes PCR chimeras without the need for a set of reference sequences . Previously there was a standalone "Pyronoise" by the same authors and this package includes an updated version. There is also a "Denoiser" in Qiime which is related but distinct. drwxr-xr-x root/root 0 2018-05-13 15:01 ./ drwxr-xr-x root/root 0 2018-05-13 15:01 ./usr/ drwxr-xr-x root/root 0 2018-05-13 15:01 ./usr/bin/ -rwxr-xr-x root/root 21916 2018-05-13 15:01 ./usr/bin/FCluster -rwxr-xr-x root/root 13732 2018-05-13 15:01 ./usr/bin/FastaUnique -rwxr-xr-x root/root 13692 2018-05-13 15:01 ./usr/bin/NDist -rwxr-xr-x root/root 38312 2018-05-13 15:01 ./usr/bin/Perseus -rwxr-xr-x root/root 38312 2018-05-13 15:01 ./usr/bin/PerseusD -rwxr-xr-x root/root 21916 2018-05-13 15:01 ./usr/bin/PyroDist -rwxr-xr-x root/root 62876 2018-05-13 15:01 ./usr/bin/PyroNoise -rwxr-xr-x root/root 66976 2018-05-13 15:01 ./usr/bin/PyroNoiseA -rwxr-xr-x root/root 66972 2018-05-13 15:01 ./usr/bin/PyroNoiseM -rwxr-xr-x root/root 17828 2018-05-13 15:01 ./usr/bin/SeqDist -rwxr-xr-x root/root 46500 2018-05-13 15:01 ./usr/bin/SeqNoise -rwxr-xr-x root/root 13724 2018-05-13 15:01 ./usr/bin/SplitClusterClust -rwxr-xr-x root/root 21916 2018-05-13 15:01 ./usr/bin/SplitClusterEven drwxr-xr-x root/root 0 2018-05-13 15:01 ./usr/share/ drwxr-xr-x root/root 0 2018-05-13 15:01 ./usr/share/ampliconnoise/ drwxr-xr-x root/root 0 2018-05-13 15:01 ./usr/share/ampliconnoise/Data/ -rw-r--r-- root/root 140066 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/LookUp.dat -rw-r--r-- root/root 140432 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/LookUp_E123.dat -rw-r--r-- root/root 140348 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/LookUp_Titanium.dat -rw-r--r-- root/root 156 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/Tran.dat -rw-r--r-- root/root 44 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/TranN.dat -rw-r--r-- root/root 156 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/Tran_D.dat -rw-r--r-- root/root 150 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/Tran_V6.dat drwxr-xr-x root/root 0 2018-05-13 15:01 ./usr/share/ampliconnoise/Scripts/ -rwxr-xr-x root/root 1726 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CSV.pl -rwxr-xr-x root/root 645 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Class.pl -rwxr-xr-x root/root 130 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Clean.sh -rwxr-xr-x root/root 1954 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Clean360.pl -rwxr-xr-x root/root 2604 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanAcyclic.pl -rwxr-xr-x root/root 2554 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanBoth.pl -rwxr-xr-x root/root 2460 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanBothM.pl -rwxr-xr-x root/root 2468 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanMinMax.pl -rwxr-xr-x root/root 133 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanMinMax.sh -rwxr-xr-x root/root 751 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/ConvertDatFasta.pl -rwxr-xr-x root/root 268 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CountFasta.pl -rwxr-xr-x root/root 185 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CountSequences.pl -rwxr-xr-x root/root 1335 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Diversity.pl -rwxr-xr-x root/root 896 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/FilterGoodClass.pl -rwxr-xr-x root/root 3001 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/FlowsFA.pl -rwxr-xr-x root/root 3008 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/FlowsFA360.pl -rwxr-xr-x root/root 3117 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/FlowsMinMax.pl -rwxr-xr-x root/root 495 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Join.pl -rwxr-xr-x root/root 789 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Map.pl -rwxr-xr-x root/root 374 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/MedianS.sh -rwxr-xr-x root/root 671 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Parse.pl -rwxr-xr-x root/root 687 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/ParseBoth.pl -rwxr-xr-x root/root 1901 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Qiime.pl -rwxr-xr-x root/root 2772 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Qiime_OTU.pl -rwxr-xr-x root/root 1746 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Qiime_Typical.pl -rwxr-xr-x root/root 11538 2013-08-01 14:50 ./usr/share/ampliconnoise/Scripts/RunBoth.sh -rwxr-xr-x root/root 11534 2013-08-01 14:54 ./usr/share/ampliconnoise/Scripts/RunBothFLX.sh -rwxr-xr-x root/root 11195 2013-08-01 14:40 ./usr/share/ampliconnoise/Scripts/RunFLX.sh -rwxr-xr-x root/root 11259 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/RunTitanium.sh -rwxr-xr-x root/root 11259 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/RunTitaniumA.sh -rwxr-xr-x root/root 14461 2013-08-01 14:40 ./usr/share/ampliconnoise/Scripts/RunTitaniumFast.sh -rwxr-xr-x root/root 13951 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/RunTitaniumWeb.sh -rwxr-xr-x root/root 967 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Split.pl -rwxr-xr-x root/root 3580 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/SplitKeys.pl -rwxr-xr-x root/root 3440 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/SplitKeysBoth.pl -rwxr-xr-x root/root 2839 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/SplitKeysFlower.pl -rwxr-xr-x root/root 538 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Sub.pl -rwxr-xr-x root/root 320 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Subsample.sh -rwxr-xr-x root/root 699 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/SubsampleDat.pl -rwxr-xr-x root/root 225 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Truncate.pl -rwxr-xr-x root/root 1747 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Typical.pl drwxr-xr-x root/root 0 2018-05-13 15:01 ./usr/share/doc-base/ -rw-r--r-- root/root 808 2017-11-13 13:56 ./usr/share/doc-base/ampliconnoise drwxr-xr-x root/root 0 2018-05-13 15:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-05-13 15:01 ./usr/share/doc/ampliconnoise/ -rw-r--r-- root/root 306514 2013-08-01 14:53 ./usr/share/doc/ampliconnoise/Doc.pdf -rw-r--r-- root/root 353 2017-11-13 13:56 ./usr/share/doc/ampliconnoise/README.Debian -rw-r--r-- root/root 1363 2018-05-13 15:01 ./usr/share/doc/ampliconnoise/changelog.Debian.gz -rw-r--r-- root/root 1214 2017-11-13 13:56 ./usr/share/doc/ampliconnoise/copyright drwxr-xr-x root/root 0 2018-05-13 15:01 ./usr/share/man/ drwxr-xr-x root/root 0 2018-05-13 15:01 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2018-05-13 15:01 ./usr/share/man/man1/FCluster.1.gz -> ampliconnoise.1.gz lrwxrwxrwx root/root 0 2018-05-13 15:01 ./usr/share/man/man1/FastaUnique.1.gz -> ampliconnoise.1.gz lrwxrwxrwx root/root 0 2018-05-13 15:01 ./usr/share/man/man1/NDist.1.gz -> ampliconnoise.1.gz lrwxrwxrwx root/root 0 2018-05-13 15:01 ./usr/share/man/man1/Perseus.1.gz -> ampliconnoise.1.gz lrwxrwxrwx root/root 0 2018-05-13 15:01 ./usr/share/man/man1/PerseusD.1.gz -> ampliconnoise.1.gz lrwxrwxrwx root/root 0 2018-05-13 15:01 ./usr/share/man/man1/PyroDist.1.gz -> ampliconnoise.1.gz lrwxrwxrwx root/root 0 2018-05-13 15:01 ./usr/share/man/man1/PyroNoise.1.gz -> ampliconnoise.1.gz lrwxrwxrwx root/root 0 2018-05-13 15:01 ./usr/share/man/man1/PyroNoiseA.1.gz -> ampliconnoise.1.gz lrwxrwxrwx root/root 0 2018-05-13 15:01 ./usr/share/man/man1/PyroNoiseM.1.gz -> ampliconnoise.1.gz lrwxrwxrwx root/root 0 2018-05-13 15:01 ./usr/share/man/man1/SeqDist.1.gz -> ampliconnoise.1.gz lrwxrwxrwx root/root 0 2018-05-13 15:01 ./usr/share/man/man1/SeqNoise.1.gz -> ampliconnoise.1.gz lrwxrwxrwx root/root 0 2018-05-13 15:01 ./usr/share/man/man1/SplitClusterClust.1.gz -> ampliconnoise.1.gz lrwxrwxrwx root/root 0 2018-05-13 15:01 ./usr/share/man/man1/SplitClusterEven.1.gz -> ampliconnoise.1.gz -rw-r--r-- root/root 2798 2018-05-13 15:01 ./usr/share/man/man1/ampliconnoise.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 12660 Build-Time: 25 Distribution: cosmic-proposed Host Architecture: i386 Install-Time: 14 Job: ampliconnoise_1.29-7build1.dsc Machine Architecture: amd64 Package: ampliconnoise Package-Time: 40 Source-Version: 1.29-7build1 Space: 12660 Status: successful Version: 1.29-7build1 -------------------------------------------------------------------------------- Finished at 20180513-1508 Build needed 00:00:40, 12660k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874473 Scanning for processes to kill in build PACKAGEBUILD-14874473 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874473 Stopping target for build PACKAGEBUILD-14874473 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-14874473 Removing build PACKAGEBUILD-14874473