RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux toyol 3.2.0-54-generic #82-Ubuntu SMP Tue Sep 10 20:08:42 UTC 2013 x86_64 Buildd toolchain package versions: launchpad-buildd_119~0.IS.08.04 python-lpbuildd_119~0.IS.08.04 bzr_2.5.1-0ubuntu2. Syncing the system clock with the buildd NTP service... 14 Dec 05:14:23 ntpdate[27343]: adjust time server 10.211.37.1 offset 0.000003 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5334693', '/home/buildd/filecache-default/bbd96c485e13ab8d985945617c0760e05eb3f309'] Unpacking chroot for build PACKAGEBUILD-5334693 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5334693'] Mounting chroot for build PACKAGEBUILD-5334693 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5334693', 'deb http://ftpmaster.internal/ubuntu trusty main universe', 'deb http://ftpmaster.internal/ubuntu trusty-security main universe', 'deb http://ftpmaster.internal/ubuntu trusty-updates main universe', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-5334693 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5334693', 'amd64'] Updating debian chroot for build PACKAGEBUILD-5334693 Ign http://ftpmaster.internal trusty InRelease Ign http://ftpmaster.internal trusty-security InRelease Ign http://ftpmaster.internal trusty-updates InRelease Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty-proposed InRelease Get:1 http://ftpmaster.internal trusty Release.gpg [933 B] Ign http://archive-team.internal trusty Release.gpg Get:2 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:4 http://archive-team.internal trusty Release [730 B] Get:5 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal trusty Release [58.5 kB] Get:7 http://ftpmaster.internal trusty-security Release [58.5 kB] Get:8 http://ftpmaster.internal trusty-updates Release [58.5 kB] Get:9 http://ftpmaster.internal trusty-proposed Release [58.5 kB] Get:10 http://archive-team.internal trusty/main amd64 Packages Get:11 http://ftpmaster.internal trusty/main amd64 Packages [1265 kB] Ign http://archive-team.internal trusty/main Translation-en Get:12 http://ftpmaster.internal trusty/universe amd64 Packages [5801 kB] Get:13 http://ftpmaster.internal trusty/main Translation-en [729 kB] Get:14 http://ftpmaster.internal trusty/universe Translation-en [3995 kB] Get:15 http://ftpmaster.internal trusty-security/main amd64 Packages [14 B] Get:16 http://ftpmaster.internal trusty-security/universe amd64 Packages [14 B] Get:17 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal trusty-updates/main amd64 Packages [14 B] Get:20 http://ftpmaster.internal trusty-updates/universe amd64 Packages [14 B] Get:21 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal trusty-proposed/main amd64 Packages [25.7 kB] Get:24 http://ftpmaster.internal trusty-proposed/universe amd64 Packages [233 kB] Get:25 http://ftpmaster.internal trusty-proposed/main Translation-en [12.7 kB] Get:26 http://ftpmaster.internal trusty-proposed/universe Translation-en [117 kB] Fetched 12.4 MB in 4s (2867 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: apt apt-transport-https binutils build-essential cpp cpp-4.8 e2fslibs e2fsprogs fakeroot g++ g++-4.8 gcc gcc-4.8 gcc-4.8-base hostname libapt-pkg4.12 libasan0 libatomic1 libcomerr2 libdb5.3 libfakeroot libgcc-4.8-dev libgcc1 libgcrypt11 libgomp1 libitm1 liblockfile-bin liblockfile1 libplymouth2 libquadmath0 libsqlite3-0 libss2 libstdc++-4.8-dev libstdc++6 libtsan0 linux-libc-dev perl perl-base perl-modules plymouth sed 41 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 33.3 MB of archives. After this operation, 17.4 kB disk space will be freed. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main e2fslibs amd64 1.42.8-1ubuntu3 [179 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main e2fsprogs amd64 1.42.8-1ubuntu3 [642 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main hostname amd64 3.15ubuntu1 [11.3 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl amd64 5.18.1-5 [2629 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl-base amd64 5.18.1-5 [1147 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty-proposed/main perl-modules all 5.18.1-5 [2680 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libdb5.3 amd64 5.3.28-3ubuntu1 [647 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main sed amd64 4.2.2-2ubuntu2 [139 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libitm1 amd64 4.8.2-10ubuntu1 [28.5 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libgomp1 amd64 4.8.2-10ubuntu1 [23.1 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libasan0 amd64 4.8.2-10ubuntu1 [63.1 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8-base amd64 4.8.2-10ubuntu1 [14.8 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libgcc1 amd64 1:4.8.2-10ubuntu1 [37.5 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libatomic1 amd64 4.8.2-10ubuntu1 [8632 B] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libtsan0 amd64 4.8.2-10ubuntu1 [94.7 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libquadmath0 amd64 4.8.2-10ubuntu1 [126 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main cpp-4.8 amd64 4.8.2-10ubuntu1 [4446 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++-4.8-dev amd64 4.8.2-10ubuntu1 [1050 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main g++-4.8 amd64 4.8.2-10ubuntu1 [7020 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8 amd64 4.8.2-10ubuntu1 [4952 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main libgcc-4.8-dev amd64 4.8.2-10ubuntu1 [1688 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++6 amd64 4.8.2-10ubuntu1 [251 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main binutils amd64 2.24-2ubuntu1 [2067 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main libapt-pkg4.12 amd64 0.9.14.1ubuntu1 [628 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main apt amd64 0.9.14.1ubuntu1 [951 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main libcomerr2 amd64 1.42.8-1ubuntu3 [61.2 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main libss2 amd64 1.42.8-1ubuntu3 [65.5 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libgcrypt11 amd64 1.5.3-2ubuntu2 [237 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main liblockfile-bin amd64 1.09-6ubuntu1 [10.8 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main liblockfile1 amd64 1.09-6ubuntu1 [8056 B] Get:31 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libsqlite3-0 amd64 3.8.1-1ubuntu3 [336 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main plymouth amd64 0.8.8-0ubuntu12 [98.1 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main libplymouth2 amd64 0.8.8-0ubuntu12 [76.4 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main apt-transport-https amd64 0.9.14.1ubuntu1 [24.7 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main cpp amd64 4:4.8.2-1ubuntu2 [27.7 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main gcc amd64 4:4.8.2-1ubuntu2 [5006 B] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main g++ amd64 4:4.8.2-1ubuntu2 [1490 B] Get:38 http://ftpmaster.internal/ubuntu/ trusty-proposed/main build-essential amd64 11.6ubuntu6 [4838 B] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main libfakeroot amd64 1.20-3ubuntu1 [25.3 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main fakeroot amd64 1.20-3ubuntu1 [55.1 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev amd64 3.12.0-7.15 [727 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 33.3 MB in 1s (21.2 MB/s) (Reading database ... 11978 files and directories currently installed.) Preparing to replace e2fslibs:amd64 1.42.8-1ubuntu1 (using .../e2fslibs_1.42.8-1ubuntu3_amd64.deb) ... Unpacking replacement e2fslibs:amd64 ... Setting up e2fslibs:amd64 (1.42.8-1ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11978 files and directories currently installed.) Preparing to replace e2fsprogs 1.42.8-1ubuntu1 (using .../e2fsprogs_1.42.8-1ubuntu3_amd64.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.42.8-1ubuntu3) ... (Reading database ... 11978 files and directories currently installed.) Preparing to replace hostname 3.13ubuntu1 (using .../hostname_3.15ubuntu1_amd64.deb) ... Unpacking replacement hostname ... Setting up hostname (3.15ubuntu1) ... (Reading database ... 11978 files and directories currently installed.) Preparing to replace perl 5.18.1-4build1 (using .../perl_5.18.1-5_amd64.deb) ... Unpacking replacement perl ... Preparing to replace perl-base 5.18.1-4build1 (using .../perl-base_5.18.1-5_amd64.deb) ... Unpacking replacement perl-base ... Setting up perl-base (5.18.1-5) ... (Reading database ... 11978 files and directories currently installed.) Preparing to replace perl-modules 5.18.1-4build1 (using .../perl-modules_5.18.1-5_all.deb) ... Unpacking replacement perl-modules ... Preparing to replace libdb5.3:amd64 5.3.28-3 (using .../libdb5.3_5.3.28-3ubuntu1_amd64.deb) ... Unpacking replacement libdb5.3:amd64 ... Setting up libdb5.3:amd64 (5.3.28-3ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11978 files and directories currently installed.) Preparing to replace sed 4.2.2-2ubuntu1 (using .../sed_4.2.2-2ubuntu2_amd64.deb) ... Unpacking replacement sed ... Setting up sed (4.2.2-2ubuntu2) ... (Reading database ... 11978 files and directories currently installed.) Preparing to replace libitm1:amd64 4.8.2-1ubuntu2 (using .../libitm1_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libitm1:amd64 ... Preparing to replace libgomp1:amd64 4.8.2-1ubuntu2 (using .../libgomp1_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libgomp1:amd64 ... Preparing to replace libasan0:amd64 4.8.2-1ubuntu2 (using .../libasan0_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libasan0:amd64 ... Preparing to replace gcc-4.8-base:amd64 4.8.2-1ubuntu2 (using .../gcc-4.8-base_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.8-base:amd64 ... Setting up gcc-4.8-base:amd64 (4.8.2-10ubuntu1) ... (Reading database ... 11978 files and directories currently installed.) Preparing to replace libgcc1:amd64 1:4.8.2-1ubuntu2 (using .../libgcc1_1%3a4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libgcc1:amd64 ... Setting up libgcc1:amd64 (1:4.8.2-10ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11978 files and directories currently installed.) Preparing to replace libatomic1:amd64 4.8.2-1ubuntu2 (using .../libatomic1_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libatomic1:amd64 ... Preparing to replace libtsan0:amd64 4.8.2-1ubuntu2 (using .../libtsan0_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libtsan0:amd64 ... Preparing to replace libquadmath0:amd64 4.8.2-1ubuntu2 (using .../libquadmath0_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libquadmath0:amd64 ... Preparing to replace cpp-4.8 4.8.2-1ubuntu2 (using .../cpp-4.8_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement cpp-4.8 ... Preparing to replace libstdc++-4.8-dev:amd64 4.8.2-1ubuntu2 (using .../libstdc++-4.8-dev_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libstdc++-4.8-dev:amd64 ... Preparing to replace g++-4.8 4.8.2-1ubuntu2 (using .../g++-4.8_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement g++-4.8 ... Preparing to replace gcc-4.8 4.8.2-1ubuntu2 (using .../gcc-4.8_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.8 ... Preparing to replace libgcc-4.8-dev:amd64 4.8.2-1ubuntu2 (using .../libgcc-4.8-dev_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libgcc-4.8-dev:amd64 ... Preparing to replace libstdc++6:amd64 4.8.2-1ubuntu2 (using .../libstdc++6_4.8.2-10ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6:amd64 ... Setting up libstdc++6:amd64 (4.8.2-10ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11977 files and directories currently installed.) Preparing to replace binutils 2.24-1ubuntu2 (using .../binutils_2.24-2ubuntu1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libapt-pkg4.12:amd64 0.9.13.1~ubuntu1 (using .../libapt-pkg4.12_0.9.14.1ubuntu1_amd64.deb) ... Unpacking replacement libapt-pkg4.12:amd64 ... Setting up libapt-pkg4.12:amd64 (0.9.14.1ubuntu1) ... Processing triggers for libc-bin ... (Reading database ... 11977 files and directories currently installed.) Preparing to replace apt 0.9.13.1~ubuntu1 (using .../apt_0.9.14.1ubuntu1_amd64.deb) ... Unpacking replacement apt ... Setting up apt (0.9.14.1ubuntu1) ... (Reading database ... 11977 files and directories currently installed.) Preparing to replace libcomerr2:amd64 1.42.8-1ubuntu1 (using .../libcomerr2_1.42.8-1ubuntu3_amd64.deb) ... Unpacking replacement libcomerr2:amd64 ... Setting up libcomerr2:amd64 (1.42.8-1ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11977 files and directories currently installed.) Preparing to replace libss2:amd64 1.42.8-1ubuntu1 (using .../libss2_1.42.8-1ubuntu3_amd64.deb) ... Unpacking replacement libss2:amd64 ... Setting up libss2:amd64 (1.42.8-1ubuntu3) ... Processing triggers for libc-bin ... (Reading database ... 11977 files and directories currently installed.) Preparing to replace libgcrypt11:amd64 1.5.3-2ubuntu1 (using .../libgcrypt11_1.5.3-2ubuntu2_amd64.deb) ... Unpacking replacement libgcrypt11:amd64 ... Preparing to replace liblockfile-bin 1.09-6 (using .../liblockfile-bin_1.09-6ubuntu1_amd64.deb) ... Unpacking replacement liblockfile-bin ... Preparing to replace liblockfile1:amd64 1.09-6 (using .../liblockfile1_1.09-6ubuntu1_amd64.deb) ... Unpacking replacement liblockfile1:amd64 ... Preparing to replace libsqlite3-0:amd64 3.8.1-1ubuntu1 (using .../libsqlite3-0_3.8.1-1ubuntu3_amd64.deb) ... Unpacking replacement libsqlite3-0:amd64 ... Preparing to replace plymouth 0.8.8-0ubuntu11 (using .../plymouth_0.8.8-0ubuntu12_amd64.deb) ... Unpacking replacement plymouth ... Preparing to replace libplymouth2:amd64 0.8.8-0ubuntu11 (using .../libplymouth2_0.8.8-0ubuntu12_amd64.deb) ... Unpacking replacement libplymouth2:amd64 ... Preparing to replace apt-transport-https 0.9.13.1~ubuntu1 (using .../apt-transport-https_0.9.14.1ubuntu1_amd64.deb) ... Unpacking replacement apt-transport-https ... Preparing to replace cpp 4:4.8.1-2ubuntu3 (using .../cpp_4%3a4.8.2-1ubuntu2_amd64.deb) ... Unpacking replacement cpp ... Preparing to replace gcc 4:4.8.1-2ubuntu3 (using .../gcc_4%3a4.8.2-1ubuntu2_amd64.deb) ... Removing old gcc doc directory. Unpacking replacement gcc ... Preparing to replace g++ 4:4.8.1-2ubuntu3 (using .../g++_4%3a4.8.2-1ubuntu2_amd64.deb) ... Unpacking replacement g++ ... Preparing to replace build-essential 11.6ubuntu5 (using .../build-essential_11.6ubuntu6_amd64.deb) ... Unpacking replacement build-essential ... Preparing to replace libfakeroot:amd64 1.20-3 (using .../libfakeroot_1.20-3ubuntu1_amd64.deb) ... Unpacking replacement libfakeroot:amd64 ... Preparing to replace fakeroot 1.20-3 (using .../fakeroot_1.20-3ubuntu1_amd64.deb) ... Unpacking replacement fakeroot ... Preparing to replace linux-libc-dev:amd64 3.12.0-5.13 (using .../linux-libc-dev_3.12.0-7.15_amd64.deb) ... Unpacking replacement linux-libc-dev:amd64 ... Setting up libitm1:amd64 (4.8.2-10ubuntu1) ... Setting up libgomp1:amd64 (4.8.2-10ubuntu1) ... Setting up libasan0:amd64 (4.8.2-10ubuntu1) ... Setting up libatomic1:amd64 (4.8.2-10ubuntu1) ... Setting up libtsan0:amd64 (4.8.2-10ubuntu1) ... Setting up libquadmath0:amd64 (4.8.2-10ubuntu1) ... Setting up cpp-4.8 (4.8.2-10ubuntu1) ... Setting up libgcc-4.8-dev:amd64 (4.8.2-10ubuntu1) ... Setting up libstdc++-4.8-dev:amd64 (4.8.2-10ubuntu1) ... Setting up binutils (2.24-2ubuntu1) ... Setting up gcc-4.8 (4.8.2-10ubuntu1) ... Setting up g++-4.8 (4.8.2-10ubuntu1) ... Setting up libgcrypt11:amd64 (1.5.3-2ubuntu2) ... Setting up liblockfile-bin (1.09-6ubuntu1) ... Setting up liblockfile1:amd64 (1.09-6ubuntu1) ... Setting up libsqlite3-0:amd64 (3.8.1-1ubuntu3) ... Setting up libplymouth2:amd64 (0.8.8-0ubuntu12) ... Setting up plymouth (0.8.8-0ubuntu12) ... update-initramfs: deferring update (trigger activated) Setting up apt-transport-https (0.9.14.1ubuntu1) ... Setting up cpp (4:4.8.2-1ubuntu2) ... Setting up gcc (4:4.8.2-1ubuntu2) ... Setting up g++ (4:4.8.2-1ubuntu2) ... Setting up build-essential (11.6ubuntu6) ... Setting up libfakeroot:amd64 (1.20-3ubuntu1) ... Setting up fakeroot (1.20-3ubuntu1) ... Setting up linux-libc-dev:amd64 (3.12.0-7.15) ... Setting up perl-modules (5.18.1-5) ... Setting up perl (5.18.1-5) ... Processing triggers for libc-bin ... Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5334693', 'amd64', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'altree_1.3.1-1.dsc'] Initiating build PACKAGEBUILD-5334693 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-54-generic #82-Ubuntu SMP Tue Sep 10 20:08:42 UTC 2013 x86_64 Automatic build of altree_1.3.1-1 on toyol by sbuild/amd64 1.170.5 Build started at 20131214-0514 ****************************************************************************** altree_1.3.1-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: bash-completion, debhelper (>= 9), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl0-dev, libatlas-base-dev, libtest-deep-perl Checking for already installed source dependencies... bash-completion: missing debhelper: missing latex-make: missing ghostscript: missing texlive-lang-french: missing texlive-latex-extra: missing texlive-latex-recommended: missing texlive-fonts-recommended: missing libmath-tamuanova-perl: missing libgsl0-dev: missing libatlas-base-dev: missing libtest-deep-perl: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install bash-completion debhelper latex-make ghostscript texlive-lang-french texlive-latex-extra texlive-latex-recommended texlive-fonts-recommended libmath-tamuanova-perl libgsl0-dev libatlas-base-dev libtest-deep-perl Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file fontconfig-config fonts-dejavu-core gawk gettext gettext-base groff-base gsfonts intltool-debian libasprintf0c2 libatlas-dev libatlas3-base libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libcairo2 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libexpat1 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgsl0ldbl libharfbuzz0b libice6 libicu48 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblcms2-2 libmagic1 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler43 libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsigsegv2 libsm6 libssl1.0.0 libtamuanova-0.2 libtiff5 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 luatex man-db mime-support po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal python3 python3-minimal python3.3 python3.3-minimal tex-common texlive-base texlive-binaries texlive-latex-base texlive-pictures transfig ucf x11-common xdg-utils Suggested packages: wamerican wordlist whois vacation dh-make gawk-doc gettext-doc ghostscript-x hpijs groff libblas-doc liblapack-doc liblapack-dev liblapack3 cups-common fonts-droid gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html liblcms2-utils less www-browser libmail-box-perl poppler-utils fonts-japanese-mincho fonts-ipafont-mincho fonts-japanese-gothic fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-unfonts-core python-doc python-tk python2.7-doc binfmt-support python3-doc python3-tk python3.3-doc perl-tk xpdf-reader pdf-viewer gv postscript-viewer python-pygments libfile-which-perl libtcltk-ruby dot2tex xfig gvfs-bin Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev inkscape libglib2.0-data shared-mime-info xml-core texlive-luatex libmail-sendmail-perl lmodern ruby wish tex-gyre tipa texlive-fonts-recommended-doc texlive-latex-base-doc texlive-latex-extra-doc texlive-latex-recommended-doc latex-beamer prosper latex-xcolor texlive-pictures-doc pgf netpbm libfile-mimeinfo-perl x11-utils x11-xserver-utils The following NEW packages will be installed: apparmor-easyprof bash-completion bsdmainutils debhelper dh-apparmor dh-python file fontconfig-config fonts-dejavu-core gawk gettext gettext-base ghostscript groff-base gsfonts intltool-debian latex-make libasprintf0c2 libatlas-base-dev libatlas-dev libatlas3-base libavahi-client3 libavahi-common-data libavahi-common3 libblas-dev libblas3 libcairo2 libcroco3 libcups2 libcupsfilters1 libcupsimage2 libexpat1 libfontconfig1 libfreetype6 libgfortran3 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common libgsl0-dev libgsl0ldbl libharfbuzz0b libice6 libicu48 libijs-0.35 libjbig0 libjbig2dec0 libjpeg-turbo8 libjpeg8 libkpathsea6 liblcms2-2 libmagic1 libmath-tamuanova-perl libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpoppler43 libptexenc1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libsigsegv2 libsm6 libssl1.0.0 libtamuanova-0.2 libtest-deep-perl libtiff5 libunistring0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxml2 libxmu6 libxpm4 libxrender1 libxt6 luatex man-db mime-support po-debconf poppler-data preview-latex-style python python-minimal python2.7 python2.7-minimal python3 python3-minimal python3.3 python3.3-minimal tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-lang-french texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures transfig ucf x11-common xdg-utils 0 upgraded, 113 newly installed, 0 to remove and 0 not upgraded. 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Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 amd64 2.1.0-4ubuntu1 [71.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 amd64 1:5.14-2ubuntu1 [183 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 amd64 1.0.1e-4ubuntu3 [826 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal amd64 3.3.3-4 [394 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib amd64 3.3.3-4 [2055 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal amd64 3.3.3-4 [1375 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main bash-completion all 1:2.0-1ubuntu3 [173 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 amd64 0.18.3.1-1ubuntu1 [7244 B] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 amd64 2.39.1-0ubuntu3 [1040 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 amd64 1.2.5-1 [23.7 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libxau6 amd64 1:1.0.8-1 [8376 B] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libxdmcp6 amd64 1:1.1.1-1 [12.8 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main libxcb1 amd64 1.9.1-3.1ubuntu1 [36.3 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libx11-data all 2:1.6.2-1ubuntu2 [111 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libx11-6 amd64 2:1.6.2-1ubuntu2 [560 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libxext6 amd64 2:1.3.2-1 [33.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 amd64 2.9.1+dfsg1-3ubuntu3 [571 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main groff-base amd64 1.22.2-3 [719 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils amd64 9.0.5ubuntu1 [203 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main man-db amd64 2.6.5-2 [710 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main libsigsegv2 amd64 2.10-2 [15.0 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main gawk amd64 1:4.0.1+dfsg-2.1ubuntu2 [781 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main libavahi-common-data amd64 0.6.31-3ubuntu1 [21.3 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main libavahi-common3 amd64 0.6.31-3ubuntu1 [21.7 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main libavahi-client3 amd64 0.6.31-3ubuntu1 [25.2 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main fonts-dejavu-core all 2.33+svn2514-3ubuntu1 [1019 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main ucf all 3.0027+nmu1 [56.3 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main fontconfig-config all 2.11.0-0ubuntu3 [47.3 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main libfreetype6 amd64 2.5.1-1ubuntu2 [305 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main libfontconfig1 amd64 2.11.0-0ubuntu3 [123 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main libpixman-1-0 amd64 0.30.2-2 [227 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main libxcb-render0 amd64 1.9.1-3.1ubuntu1 [11.0 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main libxcb-shm0 amd64 1.9.1-3.1ubuntu1 [5070 B] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main libxrender1 amd64 1:0.9.8-1 [20.9 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main libcairo2 amd64 1.12.16-0ubuntu2 [625 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 amd64 0.6.8-2ubuntu1 [82.4 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main libcups2 amd64 1.7.0-0ubuntu3 [179 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg-turbo8 amd64 1.3.0-0ubuntu1 [124 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main libjbig0 amd64 2.0-2ubuntu4 [25.9 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main libtiff5 amd64 4.0.3-6ubuntu1 [142 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main libcupsfilters1 amd64 1.0.42-2 [76.2 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main libcupsimage2 amd64 1.7.0-0ubuntu3 [15.3 kB] Get:45 http://ftpmaster.internal/ubuntu/ trusty/main libgfortran3 amd64 4.8.2-10ubuntu1 [249 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty/main libgraphite2-3 amd64 1.2.4-1ubuntu1 [53.8 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/main libharfbuzz0b amd64 0.9.24-2ubuntu2 [124 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main x11-common all 1:7.7+1ubuntu6 [58.6 kB] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main libice6 amd64 2:1.0.8-2 [47.0 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main libicu48 amd64 4.8.1.1-13+nmu1ubuntu1 [4725 kB] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main liblcms2-2 amd64 2.5-0ubuntu3 [131 kB] Get:52 http://ftpmaster.internal/ubuntu/ trusty/main libpaper1 amd64 1.1.24+nmu2ubuntu3 [13.4 kB] Get:53 http://ftpmaster.internal/ubuntu/ trusty/main libpoppler43 amd64 0.24.3-0ubuntu4 [702 kB] Get:54 http://ftpmaster.internal/ubuntu/ trusty/main libsm6 amd64 2:1.2.1-2 [18.1 kB] Get:55 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 amd64 0.9.3-5ubuntu2 [270 kB] Get:56 http://ftpmaster.internal/ubuntu/ trusty/main libxt6 amd64 1:1.1.4-1 [185 kB] Get:57 http://ftpmaster.internal/ubuntu/ trusty/main libxmu6 amd64 2:1.1.1-1 [53.8 kB] Get:58 http://ftpmaster.internal/ubuntu/ trusty/main libxpm4 amd64 1:3.5.10-1 [38.3 kB] Get:59 http://ftpmaster.internal/ubuntu/ trusty/main libxaw7 amd64 2:1.0.11-1 [201 kB] Get:60 http://ftpmaster.internal/ubuntu/ trusty/main poppler-data all 0.4.6-4 [1479 kB] Get:61 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7-minimal amd64 2.7.6-3ubuntu1 [307 kB] Get:62 http://ftpmaster.internal/ubuntu/ trusty/main python2.7-minimal amd64 2.7.6-3ubuntu1 [1188 kB] Get:63 http://ftpmaster.internal/ubuntu/ trusty/main python3.3 amd64 3.3.3-4 [129 kB] Get:64 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal amd64 3.3.2-17 [26.6 kB] Get:65 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib amd64 3.3.2-17 [7864 B] Get:66 http://ftpmaster.internal/ubuntu/ trusty/main python3 amd64 3.3.2-17 [9196 B] Get:67 http://ftpmaster.internal/ubuntu/ trusty-proposed/main dh-python all 1.20131021-1ubuntu3 [50.3 kB] Get:68 http://ftpmaster.internal/ubuntu/ trusty/main file amd64 1:5.14-2ubuntu1 [18.8 kB] Get:69 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base amd64 0.18.3.1-1ubuntu1 [78.9 kB] Get:70 http://ftpmaster.internal/ubuntu/ trusty/main gettext amd64 0.18.3.1-1ubuntu1 [1033 kB] Get:71 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:72 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:73 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu35 [20.1 kB] Get:74 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu35 [7300 B] Get:75 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20131127ubuntu1 [604 kB] Get:76 http://ftpmaster.internal/ubuntu/ trusty/main libijs-0.35 amd64 0.35-8build1 [16.8 kB] Get:77 http://ftpmaster.internal/ubuntu/ trusty/main libjbig2dec0 amd64 0.11+20120125-1ubuntu1 [48.6 kB] Get:78 http://ftpmaster.internal/ubuntu/ trusty/main libgs9-common all 9.10~dfsg-0ubuntu5 [2068 kB] Get:79 http://ftpmaster.internal/ubuntu/ trusty/main libgs9 amd64 9.10~dfsg-0ubuntu5 [1940 kB] Get:80 http://ftpmaster.internal/ubuntu/ trusty/main gsfonts all 1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1 [3374 kB] Get:81 http://ftpmaster.internal/ubuntu/ trusty/main ghostscript amd64 9.10~dfsg-0ubuntu5 [40.8 kB] Get:82 http://ftpmaster.internal/ubuntu/ trusty/main tex-common all 4.04 [621 kB] Get:83 http://ftpmaster.internal/ubuntu/ trusty/main transfig amd64 1:3.2.5.d-3ubuntu1 [632 kB] Get:84 http://ftpmaster.internal/ubuntu/ trusty/main libpython2.7-stdlib amd64 2.7.6-3ubuntu1 [1867 kB] Get:85 http://ftpmaster.internal/ubuntu/ trusty/main python2.7 amd64 2.7.6-3ubuntu1 [191 kB] Get:86 http://ftpmaster.internal/ubuntu/ trusty/main python-minimal amd64 2.7.5-5ubuntu1 [31.4 kB] Get:87 http://ftpmaster.internal/ubuntu/ trusty/main libpython-stdlib amd64 2.7.5-5ubuntu1 [7768 B] Get:88 http://ftpmaster.internal/ubuntu/ trusty/main python amd64 2.7.5-5ubuntu1 [171 kB] Get:89 http://ftpmaster.internal/ubuntu/ trusty/universe latex-make all 2.1.18-2 [903 kB] Get:90 http://ftpmaster.internal/ubuntu/ trusty/universe libatlas3-base amd64 3.10.1-2 [6997 kB] Get:91 http://ftpmaster.internal/ubuntu/ trusty/main libblas3 amd64 1.2.20110419-7 [215 kB] Get:92 http://ftpmaster.internal/ubuntu/ trusty/main libblas-dev amd64 1.2.20110419-7 [240 kB] Get:93 http://ftpmaster.internal/ubuntu/ trusty/universe libatlas-dev all 3.10.1-2 [42.5 kB] Get:94 http://ftpmaster.internal/ubuntu/ trusty/universe libatlas-base-dev amd64 3.10.1-2 [8308 kB] Get:95 http://ftpmaster.internal/ubuntu/ trusty/main libgsl0ldbl amd64 1.16+dfsg-1ubuntu1 [878 kB] Get:96 http://ftpmaster.internal/ubuntu/ trusty/main libgsl0-dev amd64 1.16+dfsg-1ubuntu1 [982 kB] Get:97 http://ftpmaster.internal/ubuntu/ trusty/main libkpathsea6 amd64 2013.20130729.30972-2build1 [63.5 kB] Get:98 http://ftpmaster.internal/ubuntu/ trusty/universe libtamuanova-0.2 amd64 0.2-3 [8348 B] Get:99 http://ftpmaster.internal/ubuntu/ trusty/universe libmath-tamuanova-perl amd64 1.0.2-2ubuntu2 [15.6 kB] Get:100 http://ftpmaster.internal/ubuntu/ trusty/main libpaper-utils amd64 1.1.24+nmu2ubuntu3 [8244 B] Get:101 http://ftpmaster.internal/ubuntu/ trusty/main libptexenc1 amd64 2013.20130729.30972-2build1 [33.8 kB] Get:102 http://ftpmaster.internal/ubuntu/ trusty/main libtest-deep-perl all 0.110-1 [41.8 kB] Get:103 http://ftpmaster.internal/ubuntu/ trusty/main luatex amd64 0.76.0-3 [3725 kB] Get:104 http://ftpmaster.internal/ubuntu/ trusty/main preview-latex-style all 11.87-1ubuntu2 [187 kB] Get:105 http://ftpmaster.internal/ubuntu/ trusty/main xdg-utils all 1.1.0~rc1-2ubuntu7 [65.6 kB] Get:106 http://ftpmaster.internal/ubuntu/ trusty/main texlive-binaries amd64 2013.20130729.30972-2build1 [4102 kB] Get:107 http://ftpmaster.internal/ubuntu/ trusty/main texlive-base all 2013.20131112-1 [16.2 MB] Get:108 http://ftpmaster.internal/ubuntu/ trusty/main texlive-fonts-recommended all 2013.20131112-1 [5406 kB] Get:109 http://ftpmaster.internal/ubuntu/ trusty/universe texlive-lang-french all 2013.20131112-2 [15.2 MB] Get:110 http://ftpmaster.internal/ubuntu/ trusty/main texlive-latex-base all 2013.20131112-1 [828 kB] Get:111 http://ftpmaster.internal/ubuntu/ trusty/main texlive-latex-recommended all 2013.20131112-1 [7083 kB] Get:112 http://ftpmaster.internal/ubuntu/ trusty/main texlive-pictures all 2013.20131112-1 [2405 kB] Get:113 http://ftpmaster.internal/ubuntu/ trusty/main texlive-latex-extra all 2013.20131112-1 [7500 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 118 MB in 5s (19.9 MB/s) Selecting previously unselected package libexpat1:amd64. 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Selecting previously unselected package texlive-latex-extra. Unpacking texlive-latex-extra (from .../texlive-latex-extra_2013.20131112-1_all.deb) ... Setting up libexpat1:amd64 (2.1.0-4ubuntu1) ... Setting up libmagic1:amd64 (1:5.14-2ubuntu1) ... Setting up libssl1.0.0:amd64 (1.0.1e-4ubuntu3) ... Setting up libpython3.3-minimal:amd64 (3.3.3-4) ... Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libpython3.3-stdlib:amd64 (3.3.3-4) ... Setting up python3.3-minimal (3.3.3-4) ... Setting up bash-completion (1:2.0-1ubuntu3) ... Setting up libasprintf0c2:amd64 (0.18.3.1-1ubuntu1) ... Setting up libglib2.0-0:amd64 (2.39.1-0ubuntu3) ... No schema files found: doing nothing. Setting up libpipeline1:amd64 (1.2.5-1) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up libxdmcp6:amd64 (1:1.1.1-1) ... Setting up libxcb1:amd64 (1.9.1-3.1ubuntu1) ... Setting up libx11-data (2:1.6.2-1ubuntu2) ... Setting up libx11-6:amd64 (2:1.6.2-1ubuntu2) ... Setting up libxext6:amd64 (2:1.3.2-1) ... Setting up libxml2:amd64 (2.9.1+dfsg1-3ubuntu3) ... Setting up groff-base (1.22.2-3) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gawk (1:4.0.1+dfsg-2.1ubuntu2) ... Setting up libavahi-common-data:amd64 (0.6.31-3ubuntu1) ... Setting up libavahi-common3:amd64 (0.6.31-3ubuntu1) ... Setting up libavahi-client3:amd64 (0.6.31-3ubuntu1) ... Setting up fonts-dejavu-core (2.33+svn2514-3ubuntu1) ... Setting up ucf (3.0027+nmu1) ... Setting up fontconfig-config (2.11.0-0ubuntu3) ... Setting up libfreetype6:amd64 (2.5.1-1ubuntu2) ... Setting up libfontconfig1:amd64 (2.11.0-0ubuntu3) ... Setting up libpixman-1-0:amd64 (0.30.2-2) ... Setting up libxcb-render0:amd64 (1.9.1-3.1ubuntu1) ... Setting up libxcb-shm0:amd64 (1.9.1-3.1ubuntu1) ... Setting up libxrender1:amd64 (1:0.9.8-1) ... Setting up libcairo2:amd64 (1.12.16-0ubuntu2) ... Setting up libcroco3:amd64 (0.6.8-2ubuntu1) ... Setting up libcups2:amd64 (1.7.0-0ubuntu3) ... Setting up libjpeg-turbo8:amd64 (1.3.0-0ubuntu1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libjbig0:amd64 (2.0-2ubuntu4) ... Setting up libtiff5:amd64 (4.0.3-6ubuntu1) ... Setting up libcupsfilters1:amd64 (1.0.42-2) ... Setting up libcupsimage2:amd64 (1.7.0-0ubuntu3) ... Setting up libgfortran3:amd64 (4.8.2-10ubuntu1) ... Setting up libgraphite2-3:amd64 (1.2.4-1ubuntu1) ... Setting up libharfbuzz0b:amd64 (0.9.24-2ubuntu2) ... Setting up x11-common (1:7.7+1ubuntu6) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6:amd64 (2:1.0.8-2) ... Setting up libicu48:amd64 (4.8.1.1-13+nmu1ubuntu1) ... Setting up liblcms2-2:amd64 (2.5-0ubuntu3) ... Setting up libpaper1:amd64 (1.1.24+nmu2ubuntu3) ... Creating config file /etc/papersize with new version Setting up libpoppler43:amd64 (0.24.3-0ubuntu4) ... Setting up libsm6:amd64 (2:1.2.1-2) ... Setting up libunistring0:amd64 (0.9.3-5ubuntu2) ... Setting up libxt6:amd64 (1:1.1.4-1) ... Setting up libxmu6:amd64 (2:1.1.1-1) ... Setting up libxpm4:amd64 (1:3.5.10-1) ... Setting up libxaw7:amd64 (2:1.0.11-1) ... Setting up poppler-data (0.4.6-4) ... Setting up libpython2.7-minimal:amd64 (2.7.6-3ubuntu1) ... Setting up python2.7-minimal (2.7.6-3ubuntu1) ... Linking and byte-compiling packages for runtime python2.7... Setting up python3.3 (3.3.3-4) ... Setting up python3-minimal (3.3.2-17) ... Setting up libpython3-stdlib:amd64 (3.3.2-17) ... Setting up file (1:5.14-2ubuntu1) ... Setting up gettext-base (0.18.3.1-1ubuntu1) ... Setting up gettext (0.18.3.1-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up libijs-0.35 (0.35-8build1) ... Setting up libjbig2dec0 (0.11+20120125-1ubuntu1) ... Setting up libgs9-common (9.10~dfsg-0ubuntu5) ... update-alternatives: using /usr/share/ghostscript/9.10 to provide /usr/share/ghostscript/current (ghostscript-current) in auto mode Setting up libgs9 (9.10~dfsg-0ubuntu5) ... Setting up gsfonts (1:8.11+urwcyr1.0.7~pre44-4.2ubuntu1) ... Setting up ghostscript (9.10~dfsg-0ubuntu5) ... Setting up tex-common (4.04) ... Running mktexlsr. This may take some time... done. texlive-base is not ready, delaying updmap-sys call texlive-base is not ready, skipping fmtutil-sys --all call Setting up transfig (1:3.2.5.d-3ubuntu1) ... Setting up libpython2.7-stdlib:amd64 (2.7.6-3ubuntu1) ... Setting up python2.7 (2.7.6-3ubuntu1) ... Setting up python-minimal (2.7.5-5ubuntu1) ... Setting up libpython-stdlib:amd64 (2.7.5-5ubuntu1) ... Setting up python (2.7.5-5ubuntu1) ... Setting up latex-make (2.1.18-2) ... Setting up libatlas3-base (3.10.1-2) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode Setting up libblas3 (1.2.20110419-7) ... Setting up libblas-dev (1.2.20110419-7) ... update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode Setting up libatlas-dev (3.10.1-2) ... Setting up libatlas-base-dev (3.10.1-2) ... update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode Setting up libgsl0ldbl (1.16+dfsg-1ubuntu1) ... Setting up libgsl0-dev (1.16+dfsg-1ubuntu1) ... Setting up libkpathsea6 (2013.20130729.30972-2build1) ... Setting up libtamuanova-0.2 (0.2-3) ... Setting up libmath-tamuanova-perl (1.0.2-2ubuntu2) ... Setting up libpaper-utils (1.1.24+nmu2ubuntu3) ... Setting up libptexenc1 (2013.20130729.30972-2build1) ... Setting up libtest-deep-perl (0.110-1) ... Setting up luatex (0.76.0-3) ... texlive-base is not ready, cannot create formats Setting up preview-latex-style (11.87-1ubuntu2) ... Setting up xdg-utils (1.1.0~rc1-2ubuntu7) ... Setting up texlive-binaries (2013.20130729.30972-2build1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Building format(s) --refresh. This may take some time... done. Setting up texlive-base (2013.20131112-1) ... /usr/bin/tl-paper: setting paper size for dvips to a4. /usr/bin/tl-paper: setting paper size for dvipdfmx to a4. /usr/bin/tl-paper: setting paper size for xdvi to a4. /usr/bin/tl-paper: setting paper size for pdftex to a4. Running mktexlsr. This may take some time... done. Building format(s) --all. This may take some time... done. Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up texlive-latex-base (2013.20131112-1) ... Running mktexlsr. This may take some time... done. Building format(s) --all --cnffile /etc/texmf/fmt.d/10texlive-latex-base.cnf. This may take some time... done. Setting up texlive-pictures (2013.20131112-1) ... Setting up texlive-fonts-recommended (2013.20131112-1) ... Setting up texlive-lang-french (2013.20131112-2) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building latex-based formats --byhyphen /var/lib/texmf/tex/generic/config/language.dat. This may take some time... done. Building e-tex based formats --byhyphen /var/lib/texmf/tex/generic/config/language.def. This may take some time... done. Setting up texlive-latex-recommended (2013.20131112-1) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Setting up texlive-latex-extra (2013.20131112-1) ... Processing triggers for tex-common ... Running mktexlsr. This may take some time... done. Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Setting up dh-python (1.20131021-1ubuntu3) ... Setting up python3 (3.3.2-17) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up apparmor-easyprof (2.8.0-0ubuntu35) ... Setting up dh-apparmor (2.8.0-0ubuntu35) ... Setting up debhelper (9.20131127ubuntu1) ... Processing triggers for libc-bin ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.17-93ubuntu4 make_3.81-8.2ubuntu3 dpkg-dev_1.17.1ubuntu1 gcc-4.8_4.8.2-10ubuntu1 g++-4.8_4.8.2-10ubuntu1 binutils_2.24-2ubuntu1 libstdc++-4.8-dev_4.8.2-10ubuntu1 libstdc++6_4.8.2-10ubuntu1 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Fri Dec 13 22:38:39 2013 UTC using RSA key ID FA0E9B9D gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./altree_1.3.1-1.dsc dpkg-source: info: extracting altree in altree-1.3.1 dpkg-source: info: unpacking altree_1.3.1.orig.tar.gz dpkg-source: info: unpacking altree_1.3.1-1.debian.tar.gz dpkg-buildpackage: source package altree dpkg-buildpackage: source version 1.3.1-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build altree-1.3.1 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh clean dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory `/build/buildd/altree-1.3.1' /usr/bin/make -C Documentation distclean make[2]: Entering directory `/build/buildd/altree-1.3.1/Documentation' make[2]: Nothing to be done for `distclean'. make[2]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' dh_auto_clean make[1]: Leaving directory `/build/buildd/altree-1.3.1' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a Checking if your kit is complete... Looks good MakeMaker (v6.66) Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib' Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib' Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Writing Makefile for ALTree::CUtils Writing MYMETA.yml and MYMETA.json Writing Makefile for altree Writing MYMETA.yml and MYMETA.json debian/rules override_dh_auto_build make[1]: Entering directory `/build/buildd/altree-1.3.1' /usr/bin/make -C Documentation pdf make[2]: Entering directory `/build/buildd/altree-1.3.1/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[3]: Entering directory `/build/buildd/altree-1.3.1/Documentation' make[3]: Nothing to be done for `LU_WATCH_FILES_SAVE'. make[3]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' ======> building manual.pdf <====== Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported. 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LU_rebuild_texdepends: new depends required ******************************************** /usr/bin/make LU_REC_LEVEL=2 manual.pdf make[4]: Entering directory `/build/buildd/altree-1.3.1/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2013/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) ======> building fig/overview.pdftex <====== ======> building fig/overview.pdftex_t <====== ======> building fig/altree-q.pdftex <====== ======> building fig/altree-q.pdftex_t <====== ======> building fig/option_b_1.fig <====== ======> building fig/option_b_2.fig <====== ======> building fig/create_file_paup.pdftex <====== ======> building fig/create_file_paup.pdftex_t <====== ======> building fig/create_file_phy.pdftex <====== ======> building fig/create_file_phy.pdftex_t <====== ======> building fig/association_paup.pdftex <====== ======> building fig/association_paup.pdftex_t <====== ======> building fig/localisation_paup.pdftex <====== ======> building fig/localisation_paup.pdftex_t <====== ======> building fig/association_phylip.pdftex <====== ======> building fig/association_phylip.pdftex_t <====== ======> building fig/association_paml.pdftex <====== ======> building fig/association_paml.pdftex_t <====== ======> building fig/localisation_paml.pdftex <====== ======> building fig/localisation_paml.pdftex_t <====== Previous compilation failed. Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[5]: Entering directory `/build/buildd/altree-1.3.1/Documentation' make[5]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported. Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found. Package texgraphicx Warning: 'texgraphicx' is now deprecated Package texdepends Warning: graphicspath already redefined. Skipping it. on inp Package texdepends Warning: Diverting empty macro 'Ginclude@eps' Package texdepends Warning: Gin@getbase already redefined. Skipping it. on inpu Package texdepends Warning: Ginclude@eps already redefined. 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Rerun to get cross-references right. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[5]: Entering directory `/build/buildd/altree-1.3.1/Documentation' make[5]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[5]: Entering directory `/build/buildd/altree-1.3.1/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' ******************************************** *********** New build needed *************** ******************************************** New manual.aux file LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...') LU_rebuild_texdepends: new depends required ******************************************** /usr/bin/make LU_REC_LEVEL=3 manual.pdf make[6]: Entering directory `/build/buildd/altree-1.3.1/Documentation' ======> building manual.bbl <====== This is BibTeX, Version 0.99d (TeX Live 2013/Debian) The top-level auxiliary file: manual.aux The style file: plainnat.bst Database file #1: stage.bib Warning--empty year in YangPAML (There was 1 warning) ======> building fig/option_b_1.pdftex <====== ======> building fig/option_b_1.pdftex_t <====== ======> building fig/option_b_2.pdftex <====== ======> building fig/option_b_2.pdftex_t <====== Previous compilation failed. 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Rerun needed /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE make[9]: Entering directory `/build/buildd/altree-1.3.1/Documentation' make[9]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' ======> building manual.pdf <====== removed 'manual.pdf_NEED_REBUILD' removed 'manual.pdf.mk' Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}' Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported. Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found. Package texgraphicx Warning: 'texgraphicx' is now deprecated Package texdepends Warning: graphicspath already redefined. Skipping it. on inp Package texdepends Warning: Diverting empty macro 'Ginclude@eps' Package texdepends Warning: Gin@getbase already redefined. Skipping it. on inpu Package texdepends Warning: Ginclude@eps already redefined. 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Chapter 7. /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE make[9]: Entering directory `/build/buildd/altree-1.3.1/Documentation' make[9]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' /usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD make[9]: Entering directory `/build/buildd/altree-1.3.1/Documentation' *** Checking rebuild with rule 'latex' *** Checking rebuild with rule 'texdepends' /usr/bin/make LU_REC_LEVEL=5 manual.pdf make[10]: Entering directory `/build/buildd/altree-1.3.1/Documentation' make[10]: `manual.pdf' is up to date. make[10]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' make[9]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' make[8]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' make[7]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' make[6]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' make[5]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' make[4]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' make[3]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' make[2]: Leaving directory `/build/buildd/altree-1.3.1/Documentation' dh_auto_build make[2]: Entering directory `/build/buildd/altree-1.3.1' cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm cp ALTree/Base.pm blib/lib/ALTree/Base.pm cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm cp ALTree/Node.pm blib/lib/ALTree/Node.pm cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm cp ALTree/Import.pm blib/lib/ALTree/Import.pm cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm cp ALTree/Input.pm blib/lib/ALTree/Input.pm cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm cp ALTree/Site.pm blib/lib/ALTree/Site.pm cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm make[3]: Entering directory `/build/buildd/altree-1.3.1/CUtils' cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils) make -C c_sources make[4]: Entering directory `/build/buildd/altree-1.3.1/CUtils/c_sources' cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/perl/5.18/CORE" chisq.c chisq.c: In function 'pochisq': chisq.c:120:24: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized] return (c * y + s); ^ cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/perl/5.18/CORE" double_permutation.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/perl/5.18/CORE" fisher.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/perl/5.18/CORE" mt19937ar.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/perl/5.18/CORE" myrand.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/perl/5.18/CORE" resampling.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/perl/5.18/CORE" rhyper.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/perl/5.18/CORE" stats.c cc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/perl/5.18/CORE" z.c z.c:12:13: warning: 'sccsfid' defined but not used [-Wunused-variable] static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85"; ^ ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o : libaltree-cutils.a make[4]: Leaving directory `/build/buildd/altree-1.3.1/CUtils/c_sources' make[4]: Entering directory `/build/buildd/altree-1.3.1/CUtils/c_sources' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/buildd/altree-1.3.1/CUtils/c_sources' /usr/bin/perl /usr/share/perl/5.18.1/ExtUtils/xsubpp -typemap /usr/share/perl/5.18/ExtUtils/typemap CUtils.xs > CUtils.xsc && mv CUtils.xsc CUtils.c Please specify prototyping behavior for CUtils.xs (see perlxs manual) cc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fstack-protector -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/perl/5.18/CORE" CUtils.c In file included from CUtils.xs:5:0: ppport.h:237:0: warning: "PERL_UNUSED_DECL" redefined [enabled by default] # define PERL_UNUSED_DECL ^ In file included from CUtils.xs:2:0: /usr/lib/perl/5.18/CORE/perl.h:320:0: note: this is the location of the previous definition # define PERL_UNUSED_DECL __attribute__unused__ ^ Running Mkbootstrap for ALTree::CUtils () chmod 644 CUtils.bs rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so cc -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector CUtils.o -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \ -lm -lpthread -lgsl -lcblas \ chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so cp CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs chmod 644 ../blib/arch/auto/ALTree/CUtils/CUtils.bs Manifying ../blib/man3/ALTree::CUtils.3pm make[3]: Leaving directory `/build/buildd/altree-1.3.1/CUtils' cp progs/altree blib/script/altree /usr/bin/perl -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree cp progs/altree-convert blib/script/altree-convert /usr/bin/perl -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert cp progs/altree-add-S blib/script/altree-add-S /usr/bin/perl -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S Manifying blib/man1/altree.1p Manifying blib/man1/altree-add-S.1p Manifying blib/man1/altree-convert.1p make[2]: Leaving directory `/build/buildd/altree-1.3.1' make[1]: Leaving directory `/build/buildd/altree-1.3.1' dh_auto_test -a make[1]: Entering directory `/build/buildd/altree-1.3.1' make[2]: Entering directory `/build/buildd/altree-1.3.1/CUtils' make[3]: Entering directory `/build/buildd/altree-1.3.1/CUtils/c_sources' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/altree-1.3.1/CUtils/c_sources' make[2]: Leaving directory `/build/buildd/altree-1.3.1/CUtils' PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t t/ALTree.t .. ok All tests successful. Files=1, Tests=1, 0 wallclock secs ( 0.03 usr 0.01 sys + 0.08 cusr 0.00 csys = 0.12 CPU) Result: PASS make[2]: Entering directory `/build/buildd/altree-1.3.1/CUtils' make[3]: Entering directory `/build/buildd/altree-1.3.1/CUtils/c_sources' make[3]: Nothing to be done for `all'. make[3]: Leaving directory `/build/buildd/altree-1.3.1/CUtils/c_sources' PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, '../blib/lib', '../blib/arch')" t/*.t t/ALTree-CUtils.t ....... ok t/double_permutation.t .. ok All tests successful. Files=2, Tests=4, 0 wallclock secs ( 0.03 usr 0.01 sys + 0.08 cusr 0.00 csys = 0.12 CPU) Result: PASS make[3]: Entering directory `/build/buildd/altree-1.3.1/CUtils/c_sources' No tests defined for ALTree::CUtils extension. make[3]: Leaving directory `/build/buildd/altree-1.3.1/CUtils/c_sources' make[2]: Leaving directory `/build/buildd/altree-1.3.1/CUtils' make[1]: Leaving directory `/build/buildd/altree-1.3.1' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/altree-1.3.1' /usr/bin/make PREFIX=debian/altree/usr install make[2]: Entering directory `/build/buildd/altree-1.3.1' make[3]: Entering directory `/build/buildd/altree-1.3.1/CUtils' make[4]: Entering directory `/build/buildd/altree-1.3.1/CUtils/c_sources' make[4]: Nothing to be done for `all'. make[4]: Leaving directory `/build/buildd/altree-1.3.1/CUtils/c_sources' make[3]: Leaving directory `/build/buildd/altree-1.3.1/CUtils' Files found in blib/arch: installing files in blib/lib into architecture dependent library tree Installing debian/altree/usr/lib/perl5/auto/ALTree/CUtils/CUtils.so Installing debian/altree/usr/lib/perl5/auto/ALTree/CUtils/CUtils.bs Installing debian/altree/usr/lib/perl5/ALTree/Base.pm Installing debian/altree/usr/lib/perl5/ALTree/Import.pm Installing debian/altree/usr/lib/perl5/ALTree/Node.pm Installing debian/altree/usr/lib/perl5/ALTree/Nanova.pm Installing debian/altree/usr/lib/perl5/ALTree/SitePerTree.pm Installing debian/altree/usr/lib/perl5/ALTree/Sens.pm Installing debian/altree/usr/lib/perl5/ALTree/SiteCollection.pm Installing debian/altree/usr/lib/perl5/ALTree/to_rewrite.pm Installing debian/altree/usr/lib/perl5/ALTree/SiteSensPerTree.pm Installing debian/altree/usr/lib/perl5/ALTree/SiteSensPerForet.pm Installing debian/altree/usr/lib/perl5/ALTree/Utils.pm Installing debian/altree/usr/lib/perl5/ALTree/SiteSens.pm Installing debian/altree/usr/lib/perl5/ALTree/Tree.pm Installing debian/altree/usr/lib/perl5/ALTree/Chi2.pm Installing debian/altree/usr/lib/perl5/ALTree/SitePerForet.pm Installing debian/altree/usr/lib/perl5/ALTree/CUtils.pm Installing debian/altree/usr/lib/perl5/ALTree/Foret.pm Installing debian/altree/usr/lib/perl5/ALTree/Site.pm Installing debian/altree/usr/lib/perl5/ALTree/Input.pm Installing debian/altree/usr/lib/perl5/auto/ALTree/CUtils/autosplit.ix Installing debian/altree/usr/share/man/man1/altree-convert.1p Installing debian/altree/usr/share/man/man1/altree-add-S.1p Installing debian/altree/usr/share/man/man1/altree.1p Installing debian/altree/usr/share/man/man3/ALTree::CUtils.3pm Installing debian/altree/usr/bin/altree-convert Installing debian/altree/usr/bin/altree Installing debian/altree/usr/bin/altree-add-S make[2]: Leaving directory `/build/buildd/altree-1.3.1' make[1]: Leaving directory `/build/buildd/altree-1.3.1' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a debian/rules override_dh_compress make[1]: Entering directory `/build/buildd/altree-1.3.1' dh_compress --exclude=.pdf make[1]: Leaving directory `/build/buildd/altree-1.3.1' dh_fixperms -a dh_strip -a dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: altree dh_strip debug symbol extraction: packages to act on: altree dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-deb: building package `altree-dbgsym' in `../altree-dbgsym_1.3.1-1_amd64.ddeb'. dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/perl5/auto/ALTree/CUtils/CUtils.so was not linked against libcblas.so.3 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a debian/rules override_dh_builddeb make[1]: Entering directory `/build/buildd/altree-1.3.1' dh_builddeb -- -Z xz INFO: pkgstriptranslations version 118 pkgstriptranslations: processing altree (in debian/altree); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/altree/DEBIAN/control, package altree, directory debian/altree pkgstripfiles: Truncating usr/share/doc/altree/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package altree took 0 s dpkg-deb: warning: 'debian/altree/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `altree' in `../altree_1.3.1-1_amd64.deb'. make[1]: Leaving directory `/build/buildd/altree-1.3.1' dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../altree_1.3.1-1_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build altree-1.3.1 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20131214-0515 Publishing debug debs. chroot-autobuild/build/buildd/altree_1.3.1-1_amd64.deb: new debian package, version 2.0. size 337576 bytes: control archive= 1708 bytes. 955 bytes, 19 lines control 2274 bytes, 34 lines md5sums Package: altree Version: 1.3.1-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 578 Depends: libatlas3-base, libc6 (>= 2.3.4), libgsl0ldbl (>= 1.9), perl (>= 5.18.1-5), perlapi-5.18.1, libmath-tamuanova-perl Suggests: altree-examples Conflicts: alphy, libcutils-perl Replaces: alphy, libcutils-perl Provides: alphy, libcutils-perl Section: science Priority: optional Homepage: http://claire.bardel.free.fr/software.html Description: program to perform phylogeny-based association and localization analysis ALTree was designed to perform association detection and localization of susceptibility sites using haplotype phylogenetic trees: first, it allows the detection of an association between a candidate gene and a disease, and second, it enables to make hypothesis about the susceptibility loci. chroot-autobuild/build/buildd/altree_1.3.1-1_amd64.deb: drwxr-xr-x root/root 0 2013-12-14 05:15 ./ drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/ drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/lib/ drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/lib/perl5/ drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/lib/perl5/ALTree/ -rw-r--r-- root/root 342 2012-10-28 20:50 ./usr/lib/perl5/ALTree/Base.pm -rw-r--r-- root/root 2026 2013-06-30 21:45 ./usr/lib/perl5/ALTree/Import.pm -rw-r--r-- root/root 5965 2012-10-28 20:50 ./usr/lib/perl5/ALTree/Node.pm -rw-r--r-- root/root 2371 2012-10-28 20:50 ./usr/lib/perl5/ALTree/Nanova.pm -rw-r--r-- root/root 876 2012-10-28 20:50 ./usr/lib/perl5/ALTree/SitePerTree.pm -rw-r--r-- root/root 1455 2012-10-28 20:50 ./usr/lib/perl5/ALTree/Sens.pm -rw-r--r-- root/root 1044 2012-10-28 20:50 ./usr/lib/perl5/ALTree/SiteCollection.pm -rw-r--r-- root/root 9288 2012-11-03 13:24 ./usr/lib/perl5/ALTree/to_rewrite.pm -rw-r--r-- root/root 2781 2012-10-28 20:50 ./usr/lib/perl5/ALTree/SiteSensPerTree.pm -rw-r--r-- root/root 905 2012-10-28 20:50 ./usr/lib/perl5/ALTree/SiteSensPerForet.pm -rw-r--r-- root/root 1467 2012-10-28 20:50 ./usr/lib/perl5/ALTree/Utils.pm -rw-r--r-- root/root 1287 2012-10-28 20:50 ./usr/lib/perl5/ALTree/SiteSens.pm -rw-r--r-- root/root 4804 2012-10-28 20:50 ./usr/lib/perl5/ALTree/Tree.pm -rw-r--r-- root/root 2897 2013-06-30 21:45 ./usr/lib/perl5/ALTree/Chi2.pm -rw-r--r-- root/root 3592 2012-10-28 20:50 ./usr/lib/perl5/ALTree/SitePerForet.pm -rw-r--r-- root/root 3081 2012-10-28 20:50 ./usr/lib/perl5/ALTree/CUtils.pm -rw-r--r-- root/root 2817 2012-10-28 20:50 ./usr/lib/perl5/ALTree/Foret.pm -rw-r--r-- root/root 1895 2012-10-28 20:50 ./usr/lib/perl5/ALTree/Site.pm -rw-r--r-- root/root 24521 2012-10-28 20:50 ./usr/lib/perl5/ALTree/Input.pm drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/lib/perl5/auto/ drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/lib/perl5/auto/ALTree/ drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/lib/perl5/auto/ALTree/CUtils/ -rw-r--r-- root/root 69888 2013-12-14 05:15 ./usr/lib/perl5/auto/ALTree/CUtils/CUtils.so -rw-r--r-- root/root 95 2013-12-14 05:15 ./usr/lib/perl5/auto/ALTree/CUtils/autosplit.ix -rw-r--r-- root/root 0 2013-12-14 05:15 ./usr/lib/perl5/auto/ALTree/CUtils/CUtils.bs drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/bin/ -rwxr-xr-x root/root 22886 2013-12-14 05:15 ./usr/bin/altree-convert -rwxr-xr-x root/root 55940 2013-12-14 05:15 ./usr/bin/altree -rwxr-xr-x root/root 15450 2013-12-14 05:15 ./usr/bin/altree-add-S drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/share/ drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/share/doc/ drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/share/doc/altree/ -rw-r--r-- root/root 1441 2012-10-28 20:50 ./usr/share/doc/altree/README -rw-r--r-- root/root 267047 2013-12-14 05:15 ./usr/share/doc/altree/manual.pdf -rw-r--r-- root/root 1363 2012-04-22 06:52 ./usr/share/doc/altree/copyright -rw-r--r-- root/root 2143 2013-12-14 05:15 ./usr/share/doc/altree/changelog.Debian.gz drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/share/man/ drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/share/man/man1/ -rw-r--r-- root/root 2750 2013-12-14 05:15 ./usr/share/man/man1/altree-convert.1p.gz -rw-r--r-- root/root 3769 2013-12-14 05:15 ./usr/share/man/man1/altree.1p.gz -rw-r--r-- root/root 2685 2013-12-14 05:15 ./usr/share/man/man1/altree-add-S.1p.gz drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/share/man/man3/ -rw-r--r-- root/root 2524 2013-12-14 05:15 ./usr/share/man/man3/ALTree::CUtils.3pm.gz drwxr-xr-x root/root 0 2013-12-14 05:15 ./usr/share/doc-base/ -rw-r--r-- root/root 517 2008-06-21 08:06 ./usr/share/doc-base/altree altree_1.3.1-1_amd64.changes: Format: 1.8 Date: Fri, 13 Dec 2013 23:27:04 +0100 Source: altree Binary: altree altree-examples Architecture: amd64 Version: 1.3.1-1 Distribution: trusty-proposed Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Vincent Danjean Description: altree - program to perform phylogeny-based association and localization a altree-examples - example files for ALTree Closes: 578550 Changes: altree (1.3.1-1) unstable; urgency=low . * New upstream release + fix a SEGV when ALTREE_PARALLEL is used with more processors than requested permutations (-r program parameter) + Fix "FTBFS with perl 5.12.0-1: long doubles" (Closes: #578550) * debian/control: Add B-D on libtest-deep-perl (required when fixing 578550) Checksums-Sha1: e42c93e022f847c562b688e304b614aaba631f91 337576 altree_1.3.1-1_amd64.deb Checksums-Sha256: 0738360344aa6f3e422f2d2a196d7e96062842878a99018a21c07375a284b771 337576 altree_1.3.1-1_amd64.deb Files: e009f9c24944d900e338836a9f382896 337576 science optional altree_1.3.1-1_amd64.deb ****************************************************************************** Built successfully ****************************************************************************** Finished at 20131214-0515 Build needed 00:00:18, 15020k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5334693'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5334693/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5334693'] Unmounting chroot for build PACKAGEBUILD-5334693... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5334693'] Removing build PACKAGEBUILD-5334693