Ubuntu
allelecount package

allelecount 4.3.0-1.1 source package in Ubuntu

Changelog

allelecount (4.3.0-1.1) unstable; urgency=medium

  [ Andreas Tille ]
  * Non-maintainer upload.
  * Propagate hardening flags

  [ Nilesh Patra ]
  * Add libjson-perl to Depends (fixes debci)

 -- Nilesh Patra <email address hidden>  Thu, 07 Oct 2021 16:42:55 +0530

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Jammy release universe misc

Downloads

File Size SHA-256 Checksum
allelecount_4.3.0-1.1.dsc 2.4 KiB 3dfa9d169f69ef5c10bbab49fda4128689743087eac92a7e14938f39d21bc565
allelecount_4.3.0.orig.tar.gz 1.3 MiB 5363ae12c2385c962728336a4498b1a29c9eaa3d4a24492d0debf897771cfd3c
allelecount_4.3.0-1.1.debian.tar.xz 15.0 KiB b0e21a37805c43ccaa62af7a607e473f8e8d5cb632cc5a31cbacfed12bd4f010

Available diffs

No changes file available.

Binary packages built by this source

allelecount: NGS copy number algorithms

 Support code for NGS copy number algorithms. Takes a file of locations
 and a [cr|b]am file and generates a count of coverage of each allele
 [ACGT] at that location (given any filter settings).
 .
 The alleleCount package primarily exists to prevent code duplication
 between some other projects, specifically AscatNGS and Battenberg.

allelecount-dbgsym: No summary available for allelecount-dbgsym in ubuntu kinetic.

No description available for allelecount-dbgsym in ubuntu kinetic.

liballelecount-perl: Perl interface to NGS copy number algorithms

 Support code for NGS copy number algorithms. Takes a file of locations
 and a [cr|b]am file and generates a count of coverage of each allele
 [ACGT] at that location (given any filter settings).
 .
 The alleleCount package primarily exists to prevent code duplication
 between some other projects, specifically AscatNGS and Battenberg.
 .
 This package provided the Perl interface to alleleCounter providing
 Sanger::CGP::AlleleCount::Genotype.