alien-hunter 1.7-10 source package in Ubuntu
Changelog
alien-hunter (1.7-10) unstable; urgency=medium
* Team upload
* Upload to unstable to accompany auto-biojava-live transition
(Closes: #1009296)
-- Pierre Gruet <email address hidden> Mon, 11 Apr 2022 16:26:05 +0200
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- all
- Section:
- science
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section | |
|---|---|---|---|---|
| Oracular | release | universe | science | |
| Noble | release | universe | science | |
| Mantic | release | universe | science | |
| Lunar | release | universe | science |
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| alien-hunter_1.7-10.dsc | 2.0 KiB | 97bb9495fc9ca059a6719c355ac86a9735246d222c66f8678e60ac8c3b476a5c |
| alien-hunter_1.7.orig.tar.gz | 25.5 KiB | fae4d3f31166e69acc7119c37a34b69ca6aad9a981c454c42d3c0773456e783f |
| alien-hunter_1.7-10.debian.tar.xz | 5.8 KiB | f73a04e5451b5dfd93050cfbf4b7fb9027ac5a4745a5305312981636462110f7 |
Available diffs
- diff from 1.7-8 to 1.7-10 (1.4 KiB)
No changes file available.
Binary packages built by this source
- alien-hunter: Interpolated Variable Order Motifs to identify horizontally acquired DNA
Alien_hunter is an application for the prediction of putative
Horizontal Gene Transfer (HGT) events with the implementation of
Interpolated Variable Order Motifs (IVOMs). An IVOM approach
exploits compositional biases using variable order motif distributions
and captures more reliably the local composition of a sequence compared
to fixed-order methods. Optionally the predictions can be parsed into a
2-state 2nd order Hidden Markov Model (HMM), in a change-point detection
framework, to optimize the localization of the boundaries of the
predicted regions. The predictions (embl format) can be automatically
loaded into Artemis genome viewer freely available at:
http://www.sanger. ac.uk/Software/ Artemis/.
