abpoa 1.5.0-1 source package in Ubuntu
Changelog
abpoa (1.5.0-1) unstable; urgency=medium
* New upstream version 1.5.0
* baseline.patch: refresh.
* buildflags.patch: refresh.
* d/t/run-unit-test: repair broken logic.
This restores tests for all possible SIMDe binaries variants.
-- Étienne Mollier <email address hidden> Sat, 13 Jan 2024 13:36:50 +0100
Upload details
- Uploaded by:
- Debian Med
- Uploaded to:
- Sid
- Original maintainer:
- Debian Med
- Architectures:
- any
- Section:
- misc
- Urgency:
- Medium Urgency
See full publishing history Publishing
| Series | Published | Component | Section |
|---|
Downloads
| File | Size | SHA-256 Checksum |
|---|---|---|
| abpoa_1.5.0-1.dsc | 2.2 KiB | 47a11bff67b479c6505e07161f1a45d0c4e2704f966d66fff215289e9ba19863 |
| abpoa_1.5.0.orig.tar.gz | 156.0 KiB | fb9fc7adc1a66af4cb47aefe79cc4bfbc11d0af23391b442d7681f965a96990d |
| abpoa_1.5.0-1.debian.tar.xz | 8.9 KiB | f3ca53998483826775a00f8f603a0d1a27426b4b344f14d83cc4ddb32dfa1167 |
Available diffs
- diff from 1.4.3-1 to 1.5.0-1 (6.7 KiB)
No changes file available.
Binary packages built by this source
- abpoa: adaptive banded Partial Order Alignment
abPOA is an extended version of Partial Order Alignment (POA) that performs
adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
can perform multiple sequence alignment (MSA) on a set of input sequences and
generate a consensus sequence by applying the heaviest bundling algorithm to
the final alignment graph.
.
abPOA can generate high-quality consensus sequences from error-prone long
reads and offer significant speed improvement over existing tools.
.
abPOA supports three alignment modes (global, local, extension) and flexible
scoring schemes that allow linear, affine and convex gap penalties. It right
now supports SSE2/SSE4.1/AVX2 vectorization.
.
For more information please refer to the paper[1] published in Bioinformatics.
.
[1]: https://dx.doi. org/10. 1093/bioinforma tics/btaa963
- abpoa-dbgsym: debug symbols for abpoa
- python3-pyabpoa: adaptive banded Partial Order Alignment - python3 module
abPOA is an extended version of Partial Order Alignment (POA) that performs
adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
can perform multiple sequence alignment (MSA) on a set of input sequences and
generate a consensus sequence by applying the heaviest bundling algorithm to
the final alignment graph.
.
abPOA can generate high-quality consensus sequences from error-prone long
reads and offer significant speed improvement over existing tools.
.
abPOA supports three alignment modes (global, local, extension) and flexible
scoring schemes that allow linear, affine and convex gap penalties. It right
now supports SSE2/SSE4.1/AVX2 vectorization.
.
This package provides the python3 module of abPOA.
- python3-pyabpoa-dbgsym: debug symbols for python3-pyabpoa
