Ubuntu
abpoa package

abpoa 1.4.3-1 source package in Ubuntu

Changelog

abpoa (1.4.3-1) unstable; urgency=medium

  * New upstream version 1.4.3
  * baseline.patch: refresh.

 -- Étienne Mollier <email address hidden>  Tue, 19 Dec 2023 14:54:04 +0100

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Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
abpoa_1.4.3-1.dsc 2.2 KiB ee6387a9136d174b9245e20e05541b44ce9064e75139902d49caee11ad21e7e5
abpoa_1.4.3.orig.tar.gz 155.6 KiB e6f67d859e651b075c516fbd33fca7c409a24b60b4697ddee25a2e7af7e9c107
abpoa_1.4.3-1.debian.tar.xz 8.6 KiB 9e8c675a381ef22b13d6007c0defe7bc3a7a983e0a0c00baa9c179f5ef96535b

Available diffs

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Binary packages built by this source

abpoa: adaptive banded Partial Order Alignment

 abPOA is an extended version of Partial Order Alignment (POA) that performs
 adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
 can perform multiple sequence alignment (MSA) on a set of input sequences and
 generate a consensus sequence by applying the heaviest bundling algorithm to
 the final alignment graph.
 .
 abPOA can generate high-quality consensus sequences from error-prone long
 reads and offer significant speed improvement over existing tools.
 .
 abPOA supports three alignment modes (global, local, extension) and flexible
 scoring schemes that allow linear, affine and convex gap penalties. It right
 now supports SSE2/SSE4.1/AVX2 vectorization.
 .
 For more information please refer to the paper[1] published in Bioinformatics.
 .
 [1]: https://dx.doi.org/10.1093/bioinformatics/btaa963

abpoa-dbgsym: debug symbols for abpoa
python3-pyabpoa: adaptive banded Partial Order Alignment - python3 module

 abPOA is an extended version of Partial Order Alignment (POA) that performs
 adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
 can perform multiple sequence alignment (MSA) on a set of input sequences and
 generate a consensus sequence by applying the heaviest bundling algorithm to
 the final alignment graph.
 .
 abPOA can generate high-quality consensus sequences from error-prone long
 reads and offer significant speed improvement over existing tools.
 .
 abPOA supports three alignment modes (global, local, extension) and flexible
 scoring schemes that allow linear, affine and convex gap penalties. It right
 now supports SSE2/SSE4.1/AVX2 vectorization.
 .
 This package provides the python3 module of abPOA.

python3-pyabpoa-dbgsym: debug symbols for python3-pyabpoa