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abpoa package

abpoa 1.4.1-4build1 source package in Ubuntu

Changelog

abpoa (1.4.1-4build1) noble; urgency=medium

  * No-change rebuild to build with python3.12 as supported.

 -- Matthias Klose <email address hidden>  Thu, 02 Nov 2023 09:17:02 +0100

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Uploaded by:
Matthias Klose
Uploaded to:
Noble
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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File Size SHA-256 Checksum
abpoa_1.4.1.orig.tar.gz 191.0 KiB b16b58e260026dd7daa75cea46c75e7c418cc1b1c681dd864d37d925157dd677
abpoa_1.4.1-4build1.debian.tar.xz 9.0 KiB d544b7398167ad260e4b89f12964872148915f0347628798167e7280b76a0679
abpoa_1.4.1-4build1.dsc 2.1 KiB 8610ef56b74d2788417fafa39b6ec173438b996075bfc165a26d00cffcffe8d1

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Binary packages built by this source

abpoa: adaptive banded Partial Order Alignment

 abPOA is an extended version of Partial Order Alignment (POA) that performs
 adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
 can perform multiple sequence alignment (MSA) on a set of input sequences and
 generate a consensus sequence by applying the heaviest bundling algorithm to
 the final alignment graph.
 .
 abPOA can generate high-quality consensus sequences from error-prone long
 reads and offer significant speed improvement over existing tools.
 .
 abPOA supports three alignment modes (global, local, extension) and flexible
 scoring schemes that allow linear, affine and convex gap penalties. It right
 now supports SSE2/SSE4.1/AVX2 vectorization.
 .
 For more information please refer to the paper[1] published in Bioinformatics.
 .
 [1]: https://dx.doi.org/10.1093/bioinformatics/btaa963

abpoa-dbgsym: debug symbols for abpoa
python3-pyabpoa: adaptive banded Partial Order Alignment - python3 module

 abPOA is an extended version of Partial Order Alignment (POA) that performs
 adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
 can perform multiple sequence alignment (MSA) on a set of input sequences and
 generate a consensus sequence by applying the heaviest bundling algorithm to
 the final alignment graph.
 .
 abPOA can generate high-quality consensus sequences from error-prone long
 reads and offer significant speed improvement over existing tools.
 .
 abPOA supports three alignment modes (global, local, extension) and flexible
 scoring schemes that allow linear, affine and convex gap penalties. It right
 now supports SSE2/SSE4.1/AVX2 vectorization.
 .
 This package provides the python3 module of abPOA.

python3-pyabpoa-dbgsym: debug symbols for python3-pyabpoa