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abpoa package

abpoa 1.4.1-4 source package in Ubuntu

Changelog

abpoa (1.4.1-4) unstable; urgency=medium

  [ Andreas Tille ]
  * Bibtex syntax for authors

  [ Étienne Mollier ]
  * d/install: flag a (blocked) install bug.
    abpoa has been accidentally installed below /bin instead of /usr/bin,
    however fixing that would go against CTTE moratorium, so just flag it
    with a big warning before someone else is tempted to fix it.
  * d/control: split python dependency for crossbuild.
    However this is not sufficient to implement fully cross compilation
    proper, as the cython3 build dependency would need to be installed as
    the native architecture to execute properly outside qemu binfmt
    context.
    Thanks to Helmut Grohne
  * d/clean: remove build artifacts not cleaned upstream.
    (Closes: #1043693, #1049682)
  * d/control: declare compliance to standards version 4.6.2.

 -- Étienne Mollier <email address hidden>  Thu, 17 Aug 2023 23:18:44 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Mantic release universe misc

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File Size SHA-256 Checksum
abpoa_1.4.1-4.dsc 2.2 KiB 37f686a5d4defef74111c4d6cfb7db5eca9c792f48b757993c7b8b9668dbc078
abpoa_1.4.1.orig.tar.gz 191.0 KiB b16b58e260026dd7daa75cea46c75e7c418cc1b1c681dd864d37d925157dd677
abpoa_1.4.1-4.debian.tar.xz 8.9 KiB 9f188ea731d5c127c77890a4e47b0722134a89ab8b46d6d98079dcf3919ec36b

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Binary packages built by this source

abpoa: adaptive banded Partial Order Alignment

 abPOA is an extended version of Partial Order Alignment (POA) that performs
 adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
 can perform multiple sequence alignment (MSA) on a set of input sequences and
 generate a consensus sequence by applying the heaviest bundling algorithm to
 the final alignment graph.
 .
 abPOA can generate high-quality consensus sequences from error-prone long
 reads and offer significant speed improvement over existing tools.
 .
 abPOA supports three alignment modes (global, local, extension) and flexible
 scoring schemes that allow linear, affine and convex gap penalties. It right
 now supports SSE2/SSE4.1/AVX2 vectorization.
 .
 For more information please refer to the paper[1] published in Bioinformatics.
 .
 [1]: https://dx.doi.org/10.1093/bioinformatics/btaa963

abpoa-dbgsym: debug symbols for abpoa
python3-pyabpoa: adaptive banded Partial Order Alignment - python3 module

 abPOA is an extended version of Partial Order Alignment (POA) that performs
 adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA
 can perform multiple sequence alignment (MSA) on a set of input sequences and
 generate a consensus sequence by applying the heaviest bundling algorithm to
 the final alignment graph.
 .
 abPOA can generate high-quality consensus sequences from error-prone long
 reads and offer significant speed improvement over existing tools.
 .
 abPOA supports three alignment modes (global, local, extension) and flexible
 scoring schemes that allow linear, affine and convex gap penalties. It right
 now supports SSE2/SSE4.1/AVX2 vectorization.
 .
 This package provides the python3 module of abPOA.

python3-pyabpoa-dbgsym: debug symbols for python3-pyabpoa