https://launchpad.net/ubuntu/+archive/test-rebuild-20181222/+build/16094141 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-041 4.4.0-142-generic #168-Ubuntu SMP Wed Jan 16 21:00:53 UTC 2019 aarch64 Buildd toolchain package versions: launchpad-buildd_167 python-lpbuildd_167 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 21 Feb 01:16:11 ntpdate[1824]: adjust time server 10.211.37.1 offset 0.000273 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-16094141 --image-type chroot /home/buildd/filecache-default/fc6c56f66744d62233b3c844f67cb7d83d839bbc Creating target for build PACKAGEBUILD-16094141 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-16094141 Starting target for build PACKAGEBUILD-16094141 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-16094141 'deb http://ftpmaster.internal/ubuntu bionic main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-security main restricted universe multiverse' 'deb http://ftpmaster.internal/ubuntu bionic-updates main restricted universe multiverse' Overriding sources.list in build-PACKAGEBUILD-16094141 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-16094141 Updating target for build PACKAGEBUILD-16094141 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [88.7 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [88.7 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main armhf Packages [968 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main Translation-en [516 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/universe armhf Packages [8269 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4941 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/multiverse armhf Packages [129 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-security/main armhf Packages [180 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-security/main Translation-en [101 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-security/universe armhf Packages [123 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-security/universe Translation-en [71.2 kB] Get:13 http://ftpmaster.internal/ubuntu bionic-security/multiverse armhf Packages [1448 B] Get:14 http://ftpmaster.internal/ubuntu bionic-security/multiverse Translation-en [1848 B] Get:15 http://ftpmaster.internal/ubuntu bionic-updates/main armhf Packages [415 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-updates/main Translation-en [196 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-updates/restricted armhf Packages [6476 B] Get:18 http://ftpmaster.internal/ubuntu bionic-updates/restricted Translation-en [3076 B] Get:19 http://ftpmaster.internal/ubuntu bionic-updates/universe armhf Packages [588 kB] Get:20 http://ftpmaster.internal/ubuntu bionic-updates/universe Translation-en [189 kB] Get:21 http://ftpmaster.internal/ubuntu bionic-updates/multiverse armhf Packages [3360 B] Get:22 http://ftpmaster.internal/ubuntu bionic-updates/multiverse Translation-en [3452 B] Fetched 17.1 MB in 7s (2537 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files binutils binutils-arm-linux-gnueabihf binutils-common bsdutils cpp cpp-7 dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libasan4 libatomic1 libbinutils libblkid1 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgomp1 libkmod2 libmount1 libncurses5 libncursesw5 libperl5.26 libpng16-16 libprocps6 libsmartcols1 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtinfo5 libubsan0 libudev1 libuuid1 linux-libc-dev mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pkgbinarymangler procps systemd systemd-sysv tar tzdata ubuntu-keyring util-linux 74 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 44.4 MB of archives. After this operation, 233 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic-updates/main armhf base-files armhf 10.1ubuntu2.4 [59.9 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-updates/main armhf bsdutils armhf 1:2.31.1-0.4ubuntu3.3 [55.5 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates/main armhf tar armhf 1.29b-2ubuntu0.1 [209 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-updates/main armhf dpkg armhf 1.19.0.5ubuntu2.1 [1094 kB] Get:5 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libext2fs2 armhf 1.44.1-1ubuntu1.1 [144 kB] Get:6 http://ftpmaster.internal/ubuntu bionic-updates/main armhf e2fsprogs armhf 1.44.1-1ubuntu1.1 [369 kB] Get:7 http://ftpmaster.internal/ubuntu bionic-updates/main armhf ncurses-bin armhf 6.1-1ubuntu1.18.04 [155 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-security/main armhf libperl5.26 armhf 5.26.1-6ubuntu0.3 [2888 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-security/main armhf perl armhf 5.26.1-6ubuntu0.3 [201 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-security/main armhf perl-base armhf 5.26.1-6ubuntu0.3 [1291 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-security/main armhf perl-modules-5.26 all 5.26.1-6ubuntu0.3 [2763 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libuuid1 armhf 2.31.1-0.4ubuntu3.3 [19.5 kB] Get:13 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libblkid1 armhf 2.31.1-0.4ubuntu3.3 [112 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libfdisk1 armhf 2.31.1-0.4ubuntu3.3 [152 kB] Get:15 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libmount1 armhf 2.31.1-0.4ubuntu3.3 [122 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libncurses5 armhf 6.1-1ubuntu1.18.04 [74.8 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libtinfo5 armhf 6.1-1ubuntu1.18.04 [68.2 kB] Get:18 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libncursesw5 armhf 6.1-1ubuntu1.18.04 [95.3 kB] Get:19 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libsmartcols1 armhf 2.31.1-0.4ubuntu3.3 [74.6 kB] Get:20 http://ftpmaster.internal/ubuntu bionic-updates/main armhf fdisk armhf 2.31.1-0.4ubuntu3.3 [97.5 kB] Get:21 http://ftpmaster.internal/ubuntu bionic-updates/main armhf util-linux armhf 2.31.1-0.4ubuntu3.3 [845 kB] Get:22 http://ftpmaster.internal/ubuntu bionic-updates/main armhf ncurses-base all 6.1-1ubuntu1.18.04 [17.8 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libgomp1 armhf 8.2.0-1ubuntu2~18.04 [66.6 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-updates/main armhf gcc-8-base armhf 8.2.0-1ubuntu2~18.04 [18.4 kB] Get:25 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libgcc1 armhf 1:8.2.0-1ubuntu2~18.04 [37.1 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libcc1-0 armhf 8.2.0-1ubuntu2~18.04 [32.7 kB] Get:27 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libatomic1 armhf 8.2.0-1ubuntu2~18.04 [7064 B] Get:28 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libstdc++6 armhf 8.2.0-1ubuntu2~18.04 [350 kB] Get:29 http://ftpmaster.internal/ubuntu bionic-security/main armhf libudev1 armhf 237-3ubuntu10.13 [48.7 kB] Get:30 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libapt-pkg5.0 armhf 1.6.8 [731 kB] Get:31 http://ftpmaster.internal/ubuntu bionic-security/main armhf libgcrypt20 armhf 1.8.1-4ubuntu1.1 [364 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-security/main armhf gpgv armhf 2.2.4-1ubuntu1.2 [167 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-updates/main armhf ubuntu-keyring all 2018.09.18.1~18.04.0 [22.4 kB] Get:34 http://ftpmaster.internal/ubuntu bionic-updates/main armhf apt armhf 1.6.8 [1121 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-security/main armhf libapparmor1 armhf 2.12-4ubuntu5.1 [27.1 kB] Get:36 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libcryptsetup12 armhf 2:2.0.2-1ubuntu1.1 [119 kB] Get:37 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libkmod2 armhf 24-1ubuntu3.2 [34.3 kB] Get:38 http://ftpmaster.internal/ubuntu bionic-updates/main armhf mount armhf 2.31.1-0.4ubuntu3.3 [99.7 kB] Get:39 http://ftpmaster.internal/ubuntu bionic-security/main armhf libprocps6 armhf 2:3.3.12-3ubuntu1.1 [28.8 kB] Get:40 http://ftpmaster.internal/ubuntu bionic-security/main armhf procps armhf 2:3.3.12-3ubuntu1.1 [213 kB] Get:41 http://ftpmaster.internal/ubuntu bionic-security/main armhf systemd armhf 237-3ubuntu10.13 [2726 kB] Get:42 http://ftpmaster.internal/ubuntu bionic-security/main armhf libsystemd0 armhf 237-3ubuntu10.13 [186 kB] Get:43 http://ftpmaster.internal/ubuntu bionic-security/main armhf systemd-sysv armhf 237-3ubuntu10.13 [12.0 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libcom-err2 armhf 1.44.1-1ubuntu1.1 [8416 B] Get:45 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libss2 armhf 1.44.1-1ubuntu1.1 [9392 B] Get:46 http://ftpmaster.internal/ubuntu bionic-security/main armhf libssl1.1 armhf 1.1.0g-2ubuntu4.3 [914 kB] Get:47 http://ftpmaster.internal/ubuntu bionic-security/main armhf openssl armhf 1.1.0g-2ubuntu4.3 [509 kB] Get:48 http://ftpmaster.internal/ubuntu bionic-security/main armhf tzdata all 2018i-0ubuntu0.18.04 [189 kB] Get:49 http://ftpmaster.internal/ubuntu bionic-security/main armhf libpng16-16 armhf 1.6.34-1ubuntu0.18.04.1 [159 kB] Get:50 http://ftpmaster.internal/ubuntu bionic-updates/main armhf binutils-arm-linux-gnueabihf armhf 2.30-21ubuntu1~18.04 [2175 kB] Get:51 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libbinutils armhf 2.30-21ubuntu1~18.04 [308 kB] Get:52 http://ftpmaster.internal/ubuntu bionic-updates/main armhf binutils armhf 2.30-21ubuntu1~18.04 [3356 B] Get:53 http://ftpmaster.internal/ubuntu bionic-updates/main armhf binutils-common armhf 2.30-21ubuntu1~18.04 [193 kB] Get:54 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libubsan0 armhf 7.3.0-27ubuntu1~18.04 [108 kB] Get:55 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libasan4 armhf 7.3.0-27ubuntu1~18.04 [327 kB] Get:56 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libcilkrts5 armhf 7.3.0-27ubuntu1~18.04 [36.0 kB] Get:57 http://ftpmaster.internal/ubuntu bionic-updates/main armhf g++-7 armhf 7.3.0-27ubuntu1~18.04 [6047 kB] Get:58 http://ftpmaster.internal/ubuntu bionic-updates/main armhf gcc-7 armhf 7.3.0-27ubuntu1~18.04 [5951 kB] Get:59 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libstdc++-7-dev armhf 7.3.0-27ubuntu1~18.04 [1536 kB] Get:60 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libgcc-7-dev armhf 7.3.0-27ubuntu1~18.04 [706 kB] Get:61 http://ftpmaster.internal/ubuntu bionic-updates/main armhf cpp-7 armhf 7.3.0-27ubuntu1~18.04 [5295 kB] Get:62 http://ftpmaster.internal/ubuntu bionic-updates/main armhf gcc-7-base armhf 7.3.0-27ubuntu1~18.04 [19.0 kB] Get:63 http://ftpmaster.internal/ubuntu bionic-updates/main armhf cpp armhf 4:7.3.0-3ubuntu2.1 [27.6 kB] Get:64 http://ftpmaster.internal/ubuntu bionic-updates/main armhf dpkg-dev all 1.19.0.5ubuntu2.1 [608 kB] Get:65 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libdpkg-perl all 1.19.0.5ubuntu2.1 [211 kB] Get:66 http://ftpmaster.internal/ubuntu bionic-updates/main armhf e2fslibs armhf 1.44.1-1ubuntu1.1 [2712 B] Get:67 http://ftpmaster.internal/ubuntu bionic-updates/main armhf gcc armhf 4:7.3.0-3ubuntu2.1 [5204 B] Get:68 http://ftpmaster.internal/ubuntu bionic-updates/main armhf g++ armhf 4:7.3.0-3ubuntu2.1 [1576 B] Get:69 http://ftpmaster.internal/ubuntu bionic-security/main armhf gpg armhf 2.2.4-1ubuntu1.2 [408 kB] Get:70 http://ftpmaster.internal/ubuntu bionic-security/main armhf gpgconf armhf 2.2.4-1ubuntu1.2 [105 kB] Get:71 http://ftpmaster.internal/ubuntu bionic-security/main armhf gpg-agent armhf 2.2.4-1ubuntu1.2 [188 kB] Get:72 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libcomerr2 armhf 1.44.1-1ubuntu1.1 [2712 B] Get:73 http://ftpmaster.internal/ubuntu bionic-security/main armhf linux-libc-dev armhf 4.15.0-45.48 [981 kB] Get:74 http://ftpmaster.internal/ubuntu bionic-security/main armhf pkgbinarymangler all 138.18.04.0 [52.8 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 44.4 MB in 2s (26.0 MB/s) (Reading database ... 12378 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu2.4_armhf.deb ... Unpacking base-files (10.1ubuntu2.4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu2.4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/update-motd.d/50-motd-news ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.31.1-0.4ubuntu3.3_armhf.deb ... Unpacking bsdutils (1:2.31.1-0.4ubuntu3.3) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.31.1-0.4ubuntu3.3) ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../tar_1.29b-2ubuntu0.1_armhf.deb ... Unpacking tar (1.29b-2ubuntu0.1) over (1.29b-2) ... Setting up tar (1.29b-2ubuntu0.1) ... (Reading database ... 12380 files and directories currently installed.) 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Unpacking libblkid1:armhf (2.31.1-0.4ubuntu3.3) over (2.31.1-0.4ubuntu3) ... Setting up libblkid1:armhf (2.31.1-0.4ubuntu3.3) ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.31.1-0.4ubuntu3.3_armhf.deb ... Unpacking libfdisk1:armhf (2.31.1-0.4ubuntu3.3) over (2.31.1-0.4ubuntu3) ... Setting up libfdisk1:armhf (2.31.1-0.4ubuntu3.3) ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../libmount1_2.31.1-0.4ubuntu3.3_armhf.deb ... Unpacking libmount1:armhf (2.31.1-0.4ubuntu3.3) over (2.31.1-0.4ubuntu3) ... Setting up libmount1:armhf (2.31.1-0.4ubuntu3.3) ... (Reading database ... 12380 files and directories currently installed.) Preparing to unpack .../libncurses5_6.1-1ubuntu1.18.04_armhf.deb ... Unpacking libncurses5:armhf (6.1-1ubuntu1.18.04) over (6.1-1ubuntu1) ... Preparing to unpack .../libtinfo5_6.1-1ubuntu1.18.04_armhf.deb ... 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Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up libperl5.26:armhf (5.26.1-6ubuntu0.3) ... Setting up libssl1.1:armhf (1.1.0g-2ubuntu4.3) ... Setting up openssl (1.1.0g-2ubuntu4.3) ... Setting up libcomerr2:armhf (1.44.1-1ubuntu1.1) ... Setting up gpg (2.2.4-1ubuntu1.2) ... Setting up libasan4:armhf (7.3.0-27ubuntu1~18.04) ... Setting up libbinutils:armhf (2.30-21ubuntu1~18.04) ... Setting up libcilkrts5:armhf (7.3.0-27ubuntu1~18.04) ... Setting up libubsan0:armhf (7.3.0-27ubuntu1~18.04) ... Setting up binutils-arm-linux-gnueabihf (2.30-21ubuntu1~18.04) ... Setting up libgcc-7-dev:armhf (7.3.0-27ubuntu1~18.04) ... Setting up cpp-7 (7.3.0-27ubuntu1~18.04) ... Setting up libstdc++-7-dev:armhf (7.3.0-27ubuntu1~18.04) ... Setting up perl (5.26.1-6ubuntu0.3) ... Setting up binutils (2.30-21ubuntu1~18.04) ... Setting up cpp (4:7.3.0-3ubuntu2.1) ... Setting up gcc-7 (7.3.0-27ubuntu1~18.04) ... Setting up g++-7 (7.3.0-27ubuntu1~18.04) ... Setting up libdpkg-perl (1.19.0.5ubuntu2.1) ... Setting up gcc (4:7.3.0-3ubuntu2.1) ... Setting up dpkg-dev (1.19.0.5ubuntu2.1) ... Setting up g++ (4:7.3.0-3ubuntu2.1) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16094141 armhf bionic -c chroot:build-PACKAGEBUILD-16094141 --arch=armhf --dist=bionic --nolog vcftools_0.1.15-1.dsc Initiating build PACKAGEBUILD-16094141 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-142-generic #168-Ubuntu SMP Wed Jan 16 21:00:53 UTC 2019 armv7l sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-041.buildd +==============================================================================+ | vcftools 0.1.15-1 (armhf) 21 Feb 2019 01:16 | +==============================================================================+ Package: vcftools Version: 0.1.15-1 Source Version: 0.1.15-1 Distribution: bionic Machine Architecture: arm64 Host Architecture: armhf Build Architecture: armhf I: NOTICE: Log filtering will replace 'build/vcftools-af_NLc/vcftools-0.1.15' with '<>' I: NOTICE: Log filtering will replace 'build/vcftools-af_NLc' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16094141/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- vcftools_0.1.15-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-pyhTH2/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-pyhTH2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-pyhTH2/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-pyhTH2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-pyhTH2/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-pyhTH2/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (126 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-pyhTH2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12385 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11), pkg-config, zlib1g-dev Filtered Build-Depends: debhelper (>= 11), pkg-config, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-vcftools-dummy' in '/<>/resolver-tr9kmp/apt_archive/sbuild-build-depends-vcftools-dummy.deb'. Ign:1 copy:/<>/resolver-tr9kmp/apt_archive ./ InRelease Get:2 copy:/<>/resolver-tr9kmp/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-tr9kmp/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-tr9kmp/apt_archive ./ Sources [227 B] Get:5 copy:/<>/resolver-tr9kmp/apt_archive ./ Packages [546 B] Fetched 2892 B in 0s (138 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install vcftools build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db pkg-config po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db pkg-config po-debconf sbuild-build-depends-vcftools-dummy zlib1g-dev 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 16.0 MB of archives. After this operation, 57.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-tr9kmp/apt_archive ./ sbuild-build-depends-vcftools-dummy 0.invalid.0 [872 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main armhf libbsd0 armhf 0.8.7-1 [40.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main armhf bsdmainutils armhf 11.1.2ubuntu1 [177 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main armhf groff-base armhf 1.22.3-10 [1013 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main armhf libpipeline1 armhf 1.5.0-1 [21.1 kB] Get:6 http://ftpmaster.internal/ubuntu bionic-updates/main armhf man-db armhf 2.8.3-2ubuntu0.1 [993 kB] Get:7 http://ftpmaster.internal/ubuntu bionic-security/main armhf libmagic-mgc armhf 1:5.32-2ubuntu0.1 [184 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-security/main armhf libmagic1 armhf 1:5.32-2ubuntu0.1 [62.7 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-security/main armhf file armhf 1:5.32-2ubuntu0.1 [21.5 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-updates/main armhf libglib2.0-0 armhf 2.56.3-0ubuntu0.18.04.1 [1016 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main armhf libicu60 armhf 60.2-3ubuntu3 [7797 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-security/main armhf libxml2 armhf 2.9.4+dfsg1-6.1ubuntu1.2 [567 kB] Get:13 http://ftpmaster.internal/ubuntu bionic-security/main armhf gettext-base armhf 0.19.8.1-6ubuntu0.1 [46.4 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main armhf libsigsegv2 armhf 2.12-1 [14.0 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main armhf m4 armhf 1.4.18-1 [181 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main armhf autoconf all 2.69-11 [322 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main armhf autotools-dev all 20180224.1 [39.6 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main armhf automake all 1:1.15.1-3ubuntu2 [509 kB] Get:19 http://ftpmaster.internal/ubuntu bionic-security/main armhf autopoint all 0.19.8.1-6ubuntu0.1 [412 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main armhf libtool all 2.4.6-2 [194 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main armhf dh-autoreconf all 17 [15.8 kB] Get:22 http://ftpmaster.internal/ubuntu bionic-security/main armhf libarchive-zip-perl all 1.60-1ubuntu0.1 [84.6 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main armhf libfile-stripnondeterminism-perl all 0.040-1.1~build1 [13.8 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main armhf libtimedate-perl all 2.3000-2 [37.5 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main armhf dh-strip-nondeterminism all 0.040-1.1~build1 [5208 B] Get:26 http://ftpmaster.internal/ubuntu bionic/main armhf libcroco3 armhf 0.6.12-2 [69.4 kB] Get:27 http://ftpmaster.internal/ubuntu bionic-security/main armhf gettext armhf 0.19.8.1-6ubuntu0.1 [834 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main armhf intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main armhf po-debconf all 1.0.20 [232 kB] Get:30 http://ftpmaster.internal/ubuntu bionic-updates/main armhf debhelper all 11.1.6ubuntu2 [902 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main armhf pkg-config armhf 0.29.1-0ubuntu2 [42.0 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-0ubuntu2 [168 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 16.0 MB in 1s (27.2 MB/s) Selecting previously unselected package libbsd0:armhf. (Reading database ... 12385 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.8.7-1_armhf.deb ... Unpacking libbsd0:armhf (0.8.7-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu1_armhf.deb ... Unpacking bsdmainutils (11.1.2ubuntu1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_armhf.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../03-libpipeline1_1.5.0-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2ubuntu0.1_armhf.deb ... Unpacking man-db (2.8.3-2ubuntu0.1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.32-2ubuntu0.1_armhf.deb ... Unpacking libmagic-mgc (1:5.32-2ubuntu0.1) ... 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Unpacking autopoint (0.19.8.1-6ubuntu0.1) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-2_all.deb ... Unpacking libtool (2.4.6-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_17_all.deb ... Unpacking dh-autoreconf (17) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.60-1ubuntu0.1_all.deb ... Unpacking libarchive-zip-perl (1.60-1ubuntu0.1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_0.040-1.1~build1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.040-1.1~build1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../22-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_0.040-1.1~build1_all.deb ... Unpacking dh-strip-nondeterminism (0.040-1.1~build1) ... Selecting previously unselected package libcroco3:armhf. Preparing to unpack .../24-libcroco3_0.6.12-2_armhf.deb ... Unpacking libcroco3:armhf (0.6.12-2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-6ubuntu0.1_armhf.deb ... Unpacking gettext (0.19.8.1-6ubuntu0.1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.20_all.deb ... Unpacking po-debconf (1.0.20) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_11.1.6ubuntu2_all.deb ... Unpacking debhelper (11.1.6ubuntu2) ... Selecting previously unselected package pkg-config. Preparing to unpack .../29-pkg-config_0.29.1-0ubuntu2_armhf.deb ... Unpacking pkg-config (0.29.1-0ubuntu2) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../30-zlib1g-dev_1%3a1.2.11.dfsg-0ubuntu2_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Selecting previously unselected package sbuild-build-depends-vcftools-dummy. Preparing to unpack .../31-sbuild-build-depends-vcftools-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-vcftools-dummy (0.invalid.0) ... Setting up libicu60:armhf (60.2-3ubuntu3) ... Setting up libarchive-zip-perl (1.60-1ubuntu0.1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:armhf (2.12-1) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:armhf (2.56.3-0ubuntu0.18.04.1) ... No schema files found: doing nothing. Setting up gettext-base (0.19.8.1-6ubuntu0.1) ... Setting up libpipeline1:armhf (1.5.0-1) ... Setting up m4 (1.4.18-1) ... Setting up libbsd0:armhf (0.8.7-1) ... Setting up libxml2:armhf (2.9.4+dfsg1-6.1ubuntu1.2) ... Setting up libmagic-mgc (1:5.32-2ubuntu0.1) ... Setting up libmagic1:armhf (1:5.32-2ubuntu0.1) ... Setting up libcroco3:armhf (0.6.12-2) ... Setting up pkg-config (0.29.1-0ubuntu2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up autotools-dev (20180224.1) ... Setting up bsdmainutils (11.1.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-6ubuntu0.1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.040-1.1~build1) ... Setting up gettext (0.19.8.1-6ubuntu0.1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-2ubuntu0.1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2ubuntu0.1) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (17) ... Setting up dh-strip-nondeterminism (0.040-1.1~build1) ... Setting up debhelper (11.1.6ubuntu2) ... Setting up sbuild-build-depends-vcftools-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-142-generic arm64 (armv7l) Toolchain package versions: binutils_2.30-21ubuntu1~18.04 dpkg-dev_1.19.0.5ubuntu2.1 g++-7_7.3.0-27ubuntu1~18.04 gcc-7_7.3.0-27ubuntu1~18.04 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-27ubuntu1~18.04 libstdc++6_8.2.0-1ubuntu2~18.04 linux-libc-dev_4.15.0-45.48 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6.8 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6ubuntu0.1 autotools-dev_20180224.1 base-files_10.1ubuntu2.4 base-passwd_3.5.44 bash_4.4.18-2ubuntu1 binutils_2.30-21ubuntu1~18.04 binutils-arm-linux-gnueabihf_2.30-21ubuntu1~18.04 binutils-common_2.30-21ubuntu1~18.04 bsdmainutils_11.1.2ubuntu1 bsdutils_1:2.31.1-0.4ubuntu3.3 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu2.1 cpp-7_7.3.0-27ubuntu1~18.04 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.1.6ubuntu2 debianutils_4.8.4 dh-autoreconf_17 dh-strip-nondeterminism_0.040-1.1~build1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu2.1 dpkg-dev_1.19.0.5ubuntu2.1 e2fslibs_1.44.1-1ubuntu1.1 e2fsprogs_1.44.1-1ubuntu1.1 fakeroot_1.22-2ubuntu1 fdisk_2.31.1-0.4ubuntu3.3 file_1:5.32-2ubuntu0.1 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu2.1 g++-7_7.3.0-27ubuntu1~18.04 gcc_4:7.3.0-3ubuntu2.1 gcc-7_7.3.0-27ubuntu1~18.04 gcc-7-base_7.3.0-27ubuntu1~18.04 gcc-8-base_8.2.0-1ubuntu2~18.04 gettext_0.19.8.1-6ubuntu0.1 gettext-base_0.19.8.1-6ubuntu0.1 gpg_2.2.4-1ubuntu1.2 gpg-agent_2.2.4-1ubuntu1.2 gpgconf_2.2.4-1ubuntu1.2 gpgv_2.2.4-1ubuntu1.2 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu5.1 libapt-pkg5.0_1.6.8 libarchive-zip-perl_1.60-1ubuntu0.1 libargon2-0_0~20161029-1.1 libasan4_7.3.0-27ubuntu1~18.04 libassuan0_2.5.1-2 libatomic1_8.2.0-1ubuntu2~18.04 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libbinutils_2.30-21ubuntu1~18.04 libblkid1_2.31.1-0.4ubuntu3.3 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-1ubuntu2~18.04 libcilkrts5_7.3.0-27ubuntu1~18.04 libcom-err2_1.44.1-1ubuntu1.1 libcomerr2_1.44.1-1ubuntu1.1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu1.1 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu2.1 libext2fs2_1.44.1-1ubuntu1.1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu3.3 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1.1~build1 libgcc-7-dev_7.3.0-27ubuntu1~18.04 libgcc1_1:8.2.0-1ubuntu2~18.04 libgcrypt20_1.8.1-4ubuntu1.1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.3-0ubuntu0.18.04.1 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.2.0-1ubuntu2~18.04 libgpg-error0_1.27-6 libhogweed4_3.4-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libjson-c3_0.12.1-1.3 libkmod2_24-1ubuntu3.2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2ubuntu0.1 libmagic1_1:5.32-2ubuntu0.1 libmount1_2.31.1-0.4ubuntu3.3 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1-1ubuntu1.18.04 libncursesw5_6.1-1ubuntu1.18.04 libnettle6_3.4-1 libnpth0_1.5-3 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl5.26_5.26.1-6ubuntu0.3 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1ubuntu0.18.04.1 libprocps6_2:3.3.12-3ubuntu1.1 libreadline7_7.0-3 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu3.3 libsqlite3-0_3.22.0-1 libss2_1.44.1-1ubuntu1.1 libssl1.1_1.1.0g-2ubuntu4.3 libstdc++-7-dev_7.3.0-27ubuntu1~18.04 libstdc++6_8.2.0-1ubuntu2~18.04 libsystemd0_237-3ubuntu10.13 libtasn1-6_4.13-2 libtimedate-perl_2.3000-2 libtinfo5_6.1-1ubuntu1.18.04 libtool_2.4.6-2 libubsan0_7.3.0-27ubuntu1~18.04 libudev1_237-3ubuntu10.13 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-31 libuuid1_2.31.1-0.4ubuntu3.3 libxml2_2.9.4+dfsg1-6.1ubuntu1.2 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.15.0-45.48 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1ubuntu1 man-db_2.8.3-2ubuntu0.1 mawk_1.3.3-17ubuntu3 mount_2.31.1-0.4ubuntu3.3 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1-1ubuntu1.18.04 ncurses-bin_6.1-1ubuntu1.18.04 openssl_1.1.0g-2ubuntu4.3 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.1-6ubuntu0.3 perl-base_5.26.1-6ubuntu0.3 perl-modules-5.26_5.26.1-6ubuntu0.3 pinentry-curses_1.1.0-1 pkg-config_0.29.1-0ubuntu2 pkgbinarymangler_138.18.04.0 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu1.1 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-vcftools-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_237-3ubuntu10.13 systemd-sysv_237-3ubuntu10.13 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2ubuntu0.1 tzdata_2018i-0ubuntu0.18.04 ubuntu-keyring_2018.09.18.1~18.04.0 util-linux_2.31.1-0.4ubuntu3.3 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Feb 18 19:13:11 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./vcftools_0.1.15-1.dsc dpkg-source: info: extracting vcftools in vcftools-0.1.15 dpkg-source: info: unpacking vcftools_0.1.15.orig.tar.gz dpkg-source: info: unpacking vcftools_0.1.15-1.debian.tar.xz dpkg-source: info: applying temporary_test_fix.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying manpage.patch dpkg-source: info: applying 0001-vcf-fix-ploidy-make-p-work-without-.-on-INC.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=noautodbgsym parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16094141 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16094141 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16094141 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package vcftools dpkg-buildpackage: info: source version 0.1.15-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build vcftools-0.1.15 dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/vcftools.substvars debian/files rm -fr -- debian/vcftools/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before autoreconf -f -i configure.ac:16: installing './compile' configure.ac:12: installing './install-sh' configure.ac:12: installing './missing' src/cpp/Makefile.am: installing './depcomp' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --with-pmdir=/share/perl5 ./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-pmdir=/share/perl5 configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++... none checking for gcc... gcc checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for perl... /usr/bin/perl checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for ZLIB... yes checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... yes checking for _Bool... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int64_t... yes checking for int8_t... yes checking for off_t... yes checking for size_t... yes checking for ssize_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking for error_at_line... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes checking for gethostbyaddr... yes checking for gethostbyname... yes checking for memset... yes checking for pow... no checking for select... yes checking for socket... yes checking for sqrt... no checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strstr... yes checking for strtol... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/cpp/Makefile config.status: creating src/perl/Makefile config.status: creating config.h config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode make[1]: Leaving directory '/<>' dh_auto_build -a make -j4 -O make all-recursive Making all in src Making all in cpp make[4]: Entering directory '/<>/src/cpp' gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bgzf.o `test -f 'bgzf.c' || echo './'`bgzf.c bgzf.c: In function ‘bgzf_check_EOF’: bgzf.c:60:34: warning: ignoring return value of ‘fread’, declared with attribute warn_unused_result [-Wunused-result] #define _bgzf_read(fp, buf, len) fread((buf), 1, (len), (FILE*)(fp)) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bgzf.c:622:2: note: in expansion of macro ‘_bgzf_read’ _bgzf_read(fp->fp, buf, 28); ^~~~~~~~~~ make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-dgeev.o `test -f 'dgeev.cpp' || echo './'`dgeev.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry.o `test -f 'entry.cpp' || echo './'`entry.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bcf_file.o `test -f 'bcf_file.cpp' || echo './'`bcf_file.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bcf_entry_setters.o `test -f 'bcf_entry_setters.cpp' || echo './'`bcf_entry_setters.cpp In file included from /usr/include/c++/7/vector:69:0, from entry.h:12, from bcf_entry.h:10, from bcf_entry_setters.cpp:9: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from entry.h:12, from bcf_entry.h:10, from bcf_entry_setters.cpp:9: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void bcf_entry::set_indv_GQUALITY(unsigned int, const float&)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/stl_vector.h: In member function ‘void bcf_entry::set_indv_GQUALITY(unsigned int, const std::vector&)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry_setters.o `test -f 'entry_setters.cpp' || echo './'`entry_setters.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bcf_entry.o `test -f 'bcf_entry.cpp' || echo './'`bcf_entry.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry_getters.o `test -f 'entry_getters.cpp' || echo './'`entry_getters.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-knetfile.o `test -f 'knetfile.c' || echo './'`knetfile.c In file included from knetfile.c:46:0: knetfile.c: In function ‘kftp_send_cmd’: knetfile.h:9:32: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] #define netwrite(fd, ptr, len) write(fd, ptr, len) ^~~~~~~~~~~~~~~~~~~ knetfile.c:236:2: note: in expansion of macro ‘netwrite’ netwrite(ftp->ctrl_fd, cmd, strlen(cmd)); ^~~~~~~~ knetfile.c: In function ‘khttp_connect_file’: knetfile.h:9:32: warning: ignoring return value of ‘write’, declared with attribute warn_unused_result [-Wunused-result] #define netwrite(fd, ptr, len) write(fd, ptr, len) ^~~~~~~~~~~~~~~~~~~ knetfile.c:415:2: note: in expansion of macro ‘netwrite’ netwrite(fp->fd, buf, l); ^~~~~~~~ make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-gamma.o `test -f 'gamma.cpp' || echo './'`gamma.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-output_log.o `test -f 'output_log.cpp' || echo './'`output_log.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry_filters.o `test -f 'entry_filters.cpp' || echo './'`entry_filters.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file.o `test -f 'variant_file.cpp' || echo './'`variant_file.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-header.o `test -f 'header.cpp' || echo './'`header.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_filters.o `test -f 'variant_file_filters.cpp' || echo './'`variant_file_filters.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-parameters.o `test -f 'parameters.cpp' || echo './'`parameters.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_diff.o `test -f 'variant_file_diff.cpp' || echo './'`variant_file_diff.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_format_convert.o `test -f 'variant_file_format_convert.cpp' || echo './'`variant_file_format_convert.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcf_entry_setters.o `test -f 'vcf_entry_setters.cpp' || echo './'`vcf_entry_setters.cpp In file included from /usr/include/c++/7/vector:69:0, from entry.h:12, from vcf_entry.h:12, from vcf_entry_setters.cpp:9: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector::iterator {aka __gnu_cxx::__normal_iterator >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/vector:64:0, from entry.h:12, from vcf_entry.h:12, from vcf_entry_setters.cpp:9: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void vcf_entry::set_indv_GQUALITY(unsigned int, double)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcftools.o `test -f 'vcftools.cpp' || echo './'`vcftools.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcf_entry.o `test -f 'vcf_entry.cpp' || echo './'`vcf_entry.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcf_file.o `test -f 'vcf_file.cpp' || echo './'`vcf_file.cpp make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_output.o `test -f 'variant_file_output.cpp' || echo './'`variant_file_output.cpp In file included from /usr/include/c++/7/vector:69:0, from variant_file.h:35, from variant_file_output.cpp:8: /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:458:5: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:394:7: note: parameter passing for argument of type ‘std::vector >::iterator {aka __gnu_cxx::__normal_iterator*, std::vector > >}’ changed in GCC 7.1 vector<_Tp, _Alloc>:: ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/7/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/7/bits/vector.tcc:105:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_realloc_insert(end(), std::forward<_Args>(__args)...); ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/set:60:0, from variant_file.h:26, from variant_file_output.cpp:8: /usr/include/c++/7/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = double; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/include/c++/7/bits/stl_tree.h:2395:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator {aka std::_Rb_tree_const_iterator > >}’ changed in GCC 7.1 _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/7/map:61:0, from variant_file.h:28, from variant_file_output.cpp:8: /usr/include/c++/7/bits/stl_map.h: In member function ‘void variant_file::output_TsTv_by_quality(const parameters&)’: /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator {aka std::_Rb_tree_const_iterator > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ /usr/include/c++/7/bits/stl_map.h:493:4: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator {aka std::_Rb_tree_const_iterator > >}’ changed in GCC 7.1 __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, ^~~ In file included from /usr/include/c++/7/vector:64:0, from variant_file.h:35, from variant_file_output.cpp:8: /usr/include/c++/7/bits/stl_vector.h: In member function ‘void variant_file::output_Tajima_D(const parameters&)’: /usr/include/c++/7/bits/stl_vector.h:712:18: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 _M_fill_insert(end(), __new_size - size(), __x); ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o vcftools vcftools-bcf_entry.o vcftools-bcf_entry_setters.o vcftools-bcf_file.o vcftools-bgzf.o vcftools-dgeev.o vcftools-entry.o vcftools-entry_filters.o vcftools-entry_getters.o vcftools-entry_setters.o vcftools-gamma.o vcftools-header.o vcftools-knetfile.o vcftools-output_log.o vcftools-parameters.o vcftools-variant_file.o vcftools-variant_file_diff.o vcftools-variant_file_filters.o vcftools-variant_file_format_convert.o vcftools-variant_file_output.o vcftools-vcf_entry.o vcftools-vcf_entry_setters.o vcftools-vcf_file.o vcftools-vcftools.o -lz make[4]: Leaving directory '/<>/src/cpp' Making all in perl make[4]: Nothing to be done for 'all'. make[4]: Nothing to be done for 'all-am'. dh_auto_test -a make -j4 -O check VERBOSE=1 Making check in src Making check in cpp make[3]: Nothing to be done for 'check'. Making check in perl make[3]: Nothing to be done for 'check'. make[3]: Nothing to be done for 'check-am'. create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a rm -f -- debian/vcftools.substvars rm -fr -- debian/.debhelper/generated/vcftools/ debian/vcftools/ debian/tmp/ dh_auto_install -a make -j4 -O install DESTDIR=/<>/debian/vcftools AM_UPDATE_INFO_DIR=no Making install in src Making install in cpp make[4]: Entering directory '/<>/src/cpp' /bin/mkdir -p '/<>/debian/vcftools/usr/share/man/man1' /usr/bin/install -c -m 644 vcftools.1 '/<>/debian/vcftools/usr/share/man/man1' make[4]: Leaving directory '/<>/src/cpp' make[4]: Entering directory '/<>/src/cpp' /bin/mkdir -p '/<>/debian/vcftools/usr/bin' /usr/bin/install -c vcftools '/<>/debian/vcftools/usr/bin' make[4]: Leaving directory '/<>/src/cpp' Making install in perl make[4]: Entering directory '/<>/src/perl' /bin/mkdir -p '/<>/debian/vcftools/usr//share/perl5' /usr/bin/install -c -m 644 FaSlice.pm Vcf.pm VcfStats.pm '/<>/debian/vcftools/usr//share/perl5' make[4]: Leaving directory '/<>/src/perl' make[4]: Entering directory '/<>/src/perl' /bin/mkdir -p '/<>/debian/vcftools/usr/bin' /usr/bin/install -c fill-aa fill-an-ac fill-fs fill-ref-md5 vcf-annotate vcf-compare vcf-concat vcf-consensus vcf-contrast vcf-convert vcf-fix-newlines vcf-fix-ploidy vcf-indel-stats vcf-isec vcf-merge vcf-phased-join vcf-query vcf-shuffle-cols vcf-sort vcf-stats vcf-subset vcf-to-tab vcf-tstv vcf-validator '/<>/debian/vcftools/usr/bin' make[4]: Leaving directory '/<>/src/perl' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. dh_installdocs -a install -d debian/vcftools/usr/share/doc/vcftools install -d debian/.debhelper/generated/vcftools cp --reflink=auto -a ./debian/README.test debian/vcftools/usr/share/doc/vcftools cp --reflink=auto -a ./debian/tests/run-unit-test debian/vcftools/usr/share/doc/vcftools chown -R 0:0 debian/vcftools/usr/share/doc chmod -R u\+rw,go=rX debian/vcftools/usr/share/doc install -p -m0644 debian/copyright debian/vcftools/usr/share/doc/vcftools/copyright rm -f debian/vcftools.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs src/perl/ChangeLog install -p -m0644 debian/changelog debian/vcftools/usr/share/doc/vcftools/changelog.Debian install -p -m0644 src/perl/ChangeLog debian/vcftools/usr/share/doc/vcftools/changelog make[1]: Leaving directory '/<>' rm -f debian/vcftools.debhelper.log debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples; mkdir -p /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite; mkdir -p /<>/debian/vcftools/usr/share/doc/vcftools/examples/testdata; cp ./examples/* /<>/debian/vcftools/usr/share/doc/vcftools/examples/testdata/; find ./src/perl/ \( -name "*.pm" -o -name "*fill*" -o -name "test.t" \) -exec cp \{\} /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite \; sed -i 's#examples#testdata#g' /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t; sed -i 's#I\.\./perl/#I\.\./\.#g' /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t; sed -i 's#\.\./perl/#/usr/bin/#g' /<>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t; make[1]: Leaving directory '/<>' dh_installman -a install -p -m0644 ./debian/mans/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-aa.1 install -p -m0644 ./debian/mans/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1 install -p -m0644 ./debian/mans/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-fs.1 install -p -m0644 ./debian/mans/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1 install -p -m0644 ./debian/mans/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1 install -p -m0644 ./debian/mans/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1 install -p -m0644 ./debian/mans/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-compare.1 install -p -m0644 ./debian/mans/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-concat.1 install -p -m0644 ./debian/mans/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1 install -p -m0644 ./debian/mans/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1 install -p -m0644 ./debian/mans/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-convert.1 install -p -m0644 ./debian/mans/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 install -p -m0644 ./debian/mans/vcf-fix-ploidy.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 install -p -m0644 ./debian/mans/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 install -p -m0644 ./debian/mans/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-isec.1 install -p -m0644 ./debian/mans/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-merge.1 install -p -m0644 ./debian/mans/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1 install -p -m0644 ./debian/mans/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-query.1 install -p -m0644 ./debian/mans/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 install -p -m0644 ./debian/mans/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-sort.1 install -p -m0644 ./debian/mans/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-stats.1 install -p -m0644 ./debian/mans/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-subset.1 install -p -m0644 ./debian/mans/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1 install -p -m0644 ./debian/mans/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1 install -p -m0644 ./debian/mans/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcf-validator.1 install -p -m0644 ./src/cpp/vcftools.1 debian/vcftools/usr/share/man/man1/vcftools.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 > debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1.dh-new man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-isec.1 > debian/vcftools/usr/share/man/man1/vcf-isec.1.dh-new man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/fill-an-ac.1 > debian/vcftools/usr/share/man/man1/fill-an-ac.1.dh-new man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-contrast.1 > debian/vcftools/usr/share/man/man1/vcf-contrast.1.dh-new mv debian/vcftools/usr/share/man/man1/fill-an-ac.1.dh-new debian/vcftools/usr/share/man/man1/fill-an-ac.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-convert.1 > debian/vcftools/usr/share/man/man1/vcf-convert.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1.dh-new debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/fill-fs.1 > debian/vcftools/usr/share/man/man1/fill-fs.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-isec.1.dh-new debian/vcftools/usr/share/man/man1/vcf-isec.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-stats.1 > debian/vcftools/usr/share/man/man1/vcf-stats.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-contrast.1.dh-new debian/vcftools/usr/share/man/man1/vcf-contrast.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-phased-join.1 > debian/vcftools/usr/share/man/man1/vcf-phased-join.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-convert.1.dh-new debian/vcftools/usr/share/man/man1/vcf-convert.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-validator.1 > debian/vcftools/usr/share/man/man1/vcf-validator.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-phased-join.1.dh-new debian/vcftools/usr/share/man/man1/vcf-phased-join.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-compare.1 > debian/vcftools/usr/share/man/man1/vcf-compare.1.dh-new mv debian/vcftools/usr/share/man/man1/fill-fs.1.dh-new debian/vcftools/usr/share/man/man1/fill-fs.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcftools.1 > debian/vcftools/usr/share/man/man1/vcftools.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-stats.1.dh-new debian/vcftools/usr/share/man/man1/vcf-stats.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 > debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-compare.1.dh-new debian/vcftools/usr/share/man/man1/vcf-compare.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-to-tab.1 > debian/vcftools/usr/share/man/man1/vcf-to-tab.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-validator.1.dh-new debian/vcftools/usr/share/man/man1/vcf-validator.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-tstv.1 > debian/vcftools/usr/share/man/man1/vcf-tstv.1.dh-new mv debian/vcftools/usr/share/man/man1/vcftools.1.dh-new debian/vcftools/usr/share/man/man1/vcftools.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-query.1 > debian/vcftools/usr/share/man/man1/vcf-query.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1.dh-new debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 > debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-to-tab.1.dh-new debian/vcftools/usr/share/man/man1/vcf-to-tab.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/fill-ref-md5.1 > debian/vcftools/usr/share/man/man1/fill-ref-md5.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-tstv.1.dh-new debian/vcftools/usr/share/man/man1/vcf-tstv.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 > debian/vcftools/usr/share/man/man1/vcf-indel-stats.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-query.1.dh-new debian/vcftools/usr/share/man/man1/vcf-query.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-subset.1 > debian/vcftools/usr/share/man/man1/vcf-subset.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1.dh-new debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/fill-aa.1 > debian/vcftools/usr/share/man/man1/fill-aa.1.dh-new mv debian/vcftools/usr/share/man/man1/fill-ref-md5.1.dh-new debian/vcftools/usr/share/man/man1/fill-ref-md5.1 chmod 0644 -- debian/vcftools/usr/share/man/man1/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1 mv debian/vcftools/usr/share/man/man1/vcf-indel-stats.1.dh-new debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-annotate.1 > debian/vcftools/usr/share/man/man1/vcf-annotate.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-subset.1.dh-new debian/vcftools/usr/share/man/man1/vcf-subset.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-merge.1 > debian/vcftools/usr/share/man/man1/vcf-merge.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-merge.1.dh-new debian/vcftools/usr/share/man/man1/vcf-merge.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-sort.1 > debian/vcftools/usr/share/man/man1/vcf-sort.1.dh-new mv debian/vcftools/usr/share/man/man1/fill-aa.1.dh-new debian/vcftools/usr/share/man/man1/fill-aa.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/fill-rsIDs.1 > debian/vcftools/usr/share/man/man1/fill-rsIDs.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-annotate.1.dh-new debian/vcftools/usr/share/man/man1/vcf-annotate.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-concat.1 > debian/vcftools/usr/share/man/man1/vcf-concat.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-sort.1.dh-new debian/vcftools/usr/share/man/man1/vcf-sort.1 chmod 0644 -- debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/fill-fs.1 debian/vcftools/usr/share/man/man1/vcftools.1 debian/vcftools/usr/share/man/man1/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-sort.1 mv debian/vcftools/usr/share/man/man1/fill-rsIDs.1.dh-new debian/vcftools/usr/share/man/man1/fill-rsIDs.1 man -l --recode UTF-8 ./debian/vcftools/usr/share/man/man1/vcf-consensus.1 > debian/vcftools/usr/share/man/man1/vcf-consensus.1.dh-new mv debian/vcftools/usr/share/man/man1/vcf-concat.1.dh-new debian/vcftools/usr/share/man/man1/vcf-concat.1 chmod 0644 -- debian/vcftools/usr/share/man/man1/fill-an-ac.1 debian/vcftools/usr/share/man/man1/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-concat.1 mv debian/vcftools/usr/share/man/man1/vcf-consensus.1.dh-new debian/vcftools/usr/share/man/man1/vcf-consensus.1 chmod 0644 -- debian/vcftools/usr/share/man/man1/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1 dh_perl -a (grep -a -s -v perl:Depends debian/vcftools.substvars; echo perl:Depends=perl) > debian/vcftools.substvars.new mv debian/vcftools.substvars.new debian/vcftools.substvars rmdir --ignore-fail-on-non-empty --parents debian/vcftools/usr/share/perl5 dh_link -a dh_strip_nondeterminism -a dh_compress -a cd debian/vcftools chmod a-x usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/doc/vcftools/examples/testdata/contrast.out usr/share/doc/vcftools/examples/testdata/contrast.vcf usr/share/doc/vcftools/examples/testdata/filters.txt usr/share/doc/vcftools/examples/testdata/fix-ploidy.vcf usr/share/doc/vcftools/examples/testdata/valid-4.0.vcf.stats usr/share/doc/vcftools/examples/testsuite/FaSlice.pm usr/share/doc/vcftools/examples/testsuite/Vcf.pm usr/share/doc/vcftools/examples/testsuite/VcfStats.pm usr/share/doc/vcftools/examples/testsuite/fill-aa usr/share/doc/vcftools/examples/testsuite/fill-fs usr/share/doc/vcftools/examples/testsuite/fill-ref-md5 usr/share/doc/vcftools/examples/testsuite/test.t usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-newlines.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1 gzip -9nf usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/doc/vcftools/examples/testdata/contrast.out usr/share/doc/vcftools/examples/testdata/contrast.vcf usr/share/doc/vcftools/examples/testdata/filters.txt usr/share/doc/vcftools/examples/testdata/fix-ploidy.vcf usr/share/doc/vcftools/examples/testdata/valid-4.0.vcf.stats usr/share/doc/vcftools/examples/testsuite/FaSlice.pm usr/share/doc/vcftools/examples/testsuite/Vcf.pm usr/share/doc/vcftools/examples/testsuite/VcfStats.pm usr/share/doc/vcftools/examples/testsuite/fill-aa usr/share/doc/vcftools/examples/testsuite/fill-fs usr/share/doc/vcftools/examples/testsuite/fill-ref-md5 usr/share/doc/vcftools/examples/testsuite/test.t usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-newlines.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1 cd '/<>' dh_fixperms -a find debian/vcftools -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/vcftools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/vcftools/usr/share/doc -type f -a -true -a ! -regex 'debian/vcftools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/vcftools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/vcftools/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/vcftools/usr/share/perl5 -type f -perm -5 -name '*.pm' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a-X find debian/vcftools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/vcftools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_strip -a install -d debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/f0 objcopy --only-keep-debug --compress-debug-sections debian/vcftools/usr/bin/vcftools debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/f0/0a3a321819a6ff0bd404a391c7678235eeee3b.debug chmod 0644 -- debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/f0/0a3a321819a6ff0bd404a391c7678235eeee3b.debug chown 0:0 -- debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/f0/0a3a321819a6ff0bd404a391c7678235eeee3b.debug strip --remove-section=.comment --remove-section=.note debian/vcftools/usr/bin/vcftools objcopy --add-gnu-debuglink debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/f0/0a3a321819a6ff0bd404a391c7678235eeee3b.debug debian/vcftools/usr/bin/vcftools rm -fr debian/.debhelper/vcftools/dbgsym-root dh_makeshlibs -a rm -f debian/vcftools/DEBIAN/shlibs dh_shlibdeps -a install -d debian/vcftools/DEBIAN dpkg-shlibdeps -Tdebian/vcftools.substvars debian/vcftools/usr/bin/vcftools dh_installdeb -a dh_gencontrol -a echo misc:Depends= >> debian/vcftools.substvars echo misc:Pre-Depends= >> debian/vcftools.substvars dpkg-gencontrol -pvcftools -ldebian/changelog -Tdebian/vcftools.substvars -Pdebian/vcftools -UMulti-Arch chmod 0644 -- debian/vcftools/DEBIAN/control chown 0:0 -- debian/vcftools/DEBIAN/control dh_md5sums -a (cd debian/vcftools >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/vcftools/DEBIAN/md5sums chown 0:0 -- debian/vcftools/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/vcftools .. INFO: pkgstriptranslations version 138.18.04.0 pkgstriptranslations: processing vcftools (in debian/vcftools); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/vcftools/DEBIAN/control, package vcftools, directory debian/vcftools .. removing usr/share/doc/vcftools/changelog.gz pkgstripfiles: Truncating usr/share/doc/vcftools/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package vcftools ... pkgstripfiles: No PNG files. dpkg-deb: building package 'vcftools' in '../vcftools_0.1.15-1_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../vcftools_0.1.15-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build vcftools-0.1.15 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190221-0118 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ vcftools_0.1.15-1_armhf.changes: -------------------------------- Format: 1.8 Date: Sun, 18 Feb 2018 20:08:00 +0100 Source: vcftools Binary: vcftools Architecture: armhf Version: 0.1.15-1 Distribution: bionic Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: vcftools - Collection of tools to work with VCF files Changes: vcftools (0.1.15-1) unstable; urgency=medium . * New upstream version . [ Steffen Moeller ] * debian/upstream/metadata: - added references to registries - yamllint cleanliness . [ Andreas Tille ] * Standards-Version: 4.1.3 * debhelper 11 * d/rules: do not parse d/changelog Checksums-Sha1: d498b4b8eeef947d500a23f4fc416ccc12cc34e2 5033 vcftools_0.1.15-1_armhf.buildinfo 399c5cefb825c62bb5ee9ecc284e3909f0d72ce7 416272 vcftools_0.1.15-1_armhf.deb Checksums-Sha256: 548a544ba853c5603ad13715fe598b3dff24632bb4139a9ee0ca9c8169df1003 5033 vcftools_0.1.15-1_armhf.buildinfo b4e8f779d3dfb5f777ee3f64a9df76007e0c5932a55d0cc400debf8fcc6271a1 416272 vcftools_0.1.15-1_armhf.deb Files: 4fdeebb2db0f3834377f9fd1a2506eb7 5033 science optional vcftools_0.1.15-1_armhf.buildinfo cccb7fd09a0e6a6945cabf1644c519fb 416272 science optional vcftools_0.1.15-1_armhf.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ vcftools_0.1.15-1_armhf.deb --------------------------- new debian package, version 2.0. size 416272 bytes: control archive=3544 bytes. 763 bytes, 16 lines control 8585 bytes, 113 lines md5sums Package: vcftools Version: 0.1.15-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1112 Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.6), perl Recommends: tabix Section: science Priority: optional Homepage: https://vcftools.github.io/ Description: Collection of tools to work with VCF files VCFtools is a program package designed for working with VCF files, such as those generated by the 1000 Genomes Project. The aim of VCFtools is to provide methods for working with VCF files: validating, merging, comparing and calculate some basic population genetic statistics. drwxr-xr-x root/root 0 2018-02-18 19:08 ./ drwxr-xr-x root/root 0 2018-02-18 19:08 ./usr/ drwxr-xr-x root/root 0 2018-02-18 19:08 ./usr/bin/ -rwxr-xr-x root/root 6104 2018-02-18 19:08 ./usr/bin/fill-aa -rwxr-xr-x root/root 1261 2018-02-18 19:08 ./usr/bin/fill-an-ac -rwxr-xr-x root/root 8068 2018-02-18 19:08 ./usr/bin/fill-fs -rwxr-xr-x root/root 6567 2018-02-18 19:08 ./usr/bin/fill-ref-md5 -rwxr-xr-x root/root 51253 2018-02-18 19:08 ./usr/bin/vcf-annotate -rwxr-xr-x root/root 57390 2018-02-18 19:08 ./usr/bin/vcf-compare -rwxr-xr-x root/root 10952 2018-02-18 19:08 ./usr/bin/vcf-concat -rwxr-xr-x root/root 9226 2018-02-18 19:08 ./usr/bin/vcf-consensus -rwxr-xr-x root/root 8797 2018-02-18 19:08 ./usr/bin/vcf-contrast -rwxr-xr-x root/root 6171 2018-02-18 19:08 ./usr/bin/vcf-convert -rwxr-xr-x root/root 2298 2018-02-18 19:08 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+------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: armhf Build-Space: 36160 Build-Time: 103 Distribution: bionic Host Architecture: armhf Install-Time: 18 Job: vcftools_0.1.15-1.dsc Machine Architecture: arm64 Package: vcftools Package-Time: 123 Source-Version: 0.1.15-1 Space: 36160 Status: successful Version: 0.1.15-1 -------------------------------------------------------------------------------- Finished at 20190221-0118 Build needed 00:02:03, 36160k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=armhf PACKAGEBUILD-16094141 Scanning for processes to kill in build PACKAGEBUILD-16094141