Error when creating matrix/exporting trees
Affects | Status | Importance | Assigned to | Milestone | |
---|---|---|---|---|---|
Supertree Toolkit |
New
|
Undecided
|
Unassigned |
Bug Description
I can import trees and bibtex files but when trying to export trees or create matrices I get the following error:
Failed to export trees due to an unknown error. Please report this a bug
Traceback (most recent call last):
File "C:\Python27\
output_string = stk.amalgamate_
File "C:\Python27\
_check_
File "C:\Python27\
File "C:\Python27\
t.getparent
File "lxml.etree.pyx", line 2355, in lxml.etree.
KeyError: 'name'
Failed to create matrix due to an unknown error.
Traceback (most recent call last):
File "C:\Python27\
matrix = stk.create_
File "C:\Python27\
_check_
File "C:\Python27\
File "C:\Python27\
t.getparent
File "lxml.etree.pyx", line 2355, in lxml.etree.
KeyError: 'name'
Both errors seem to boil down to the lxml.etree.pyx file or the name issue, I have installed lxml via pip but I am still getting the same error.
If I ignore warnings for matrix creation, it saves an output file but this does not work for the export trees function.
Any help in resolving this would be really appreciated.
Hi Tom,
Thanks for reporting. I suspect this is because you don't have all the information required inputted into the GUI. Can you send/attach the PHYML file and I can take a look? In the GUI everything in blue text should be completed (even with dummy data).