Please backport concavity 0.1-2 (universe) from raring
Affects | Status | Importance | Assigned to | Milestone | |
---|---|---|---|---|---|
Precise Backports |
Fix Released
|
Undecided
|
Unassigned | ||
Quantal Backports |
Fix Released
|
Undecided
|
Unassigned |
Bug Description
Please backport concavity 0.1-2 (universe) from raring to quantal and precise.
Reason for the backport:
=======
One of the major issues for drug development in any way is to have a clue what kind of substances could bound to a protein.
For in silico prediction on this(e.g. with AutoDock) it is helpfull to reduce the protein surface to just
that parts where an interaction is possible at all. This are the ligand binding sides of a protein.
That is where concavity fits. It arises a precision up to 80%, which is remarkable more that other
programs/algorithms archive. The most establisched ones are arround 60% precision is ligand binding side prediction.
So, concavity makes a remarkable advance in this area and should be brought to those parts of the community who reside on stable release Quantal and LTS Precise.
Testing:
========
Mark off items in the checklist [X] as you test them, but please leave the checklist so that backporters can quickly evaluate the state of testing.
You can test-build the backport in your PPA with backportpackage:
$ backportpackage -u ppa:<lp username>/<ppa name> -s raring -d quantal concavity
* quantal:
[x] Package builds without modification
[x] concavity installs cleanly and runs
[x] concavity-dbg installs cleanly and runs
*precise:
[x] Package builds without notification
[x] concavity installs cleanly and runs
[x] concavity-dbg installs cleanly and runs
No reverse dependencies
Changed in precise-backports: | |
status: | New → Confirmed |
Changed in quantal-backports: | |
status: | New → Confirmed |
I have figured out how to handle with backporting script and pbuilder.
The build for quantal and precise run with success to the end. The binary packages for Quantal and Precise are now there, and also the -dbg packages for Quantal and Precise.
A testinstallation on Quantal is already performed and Precise is pendig, but should be tested until the evening.
I adapt the bug desription to this.