On Debian 8.9 with Mixxx git master r6402; built on: Dec 2 2017, 48kHz sample rate, ALSA back-end, master out set to a USB sound card, headphone out set to internal sound card, latency at 2.33ms, dragging and dropping tracks either to a crate or a deck causes the master out audio to stutter during the dragging. (I didn't check the headphone audio.)
Increasing the latency reduces the effect, but it's still present even at 21.3ms. It happens the same with just the master out set to the internal sound card and no headphone output set.
Even at 42.7ms, I still get occasional glitches on the master output dragging a track from the library to a crate or a deck.
I *do* see this problem in the latest 2.0/1.12 branch as well FWIW, so maybe it's just my system?
This usually indicates the latency is set too low. Where do you have it?