Bug #531505 “Menubar is incomplete” : Bugs : Gephi

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Mathieu Bastian (mathieu.bastian) wrote on 2010-04-10:

#1

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Log file :

-------------------------------------------------------------------------------
>Log Session: Saturday, April 3, 2010 9:13:33 AM CDT
>System Info:
  Product Version = Gephi 0.7 alpha3 200912041610
  Operating System = Mac OS X version 10.5.8 running on x86_64
  Java; VM; Vendor = 1.6.0_17; Java HotSpot(TM) 64-Bit Server VM 14.3-b01-101; Apple Inc.
  Runtime = Java(TM) SE Runtime Environment 1.6.0_17-b04-248-9M3125
  Java Home = /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home
  System Locale; Encoding = en_US (gephidesktop); MacRoman
  Home Directory = /Users/joel
  Current Directory = /
  User Directory = /Users/joel/Library/Application Support/gephidesktop/dev
  Installation = /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/gephidesktop
                            /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11
  Boot & Ext. Classpath = /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jsfd.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/classes.jar:/System/Library/Frameworks/JavaVM.framework/Frameworks/JavaRuntimeSupport.framework/Resources/Java/JavaRuntimeSupport.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/ui.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/laf.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/sunrsasign.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jsse.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/charsets.jar:/System/Library/Java/Extensions/AppleScriptEngine.jar:/System/Library/Java/Extensions/CoreAudio.jar:/System/Library/Java/Extensions/dns_sd.jar:/System/Library/Java/Extensions/j3daudio.jar:/System/Library/Java/Extensions/j3dcore.jar:/System/Library/Java/Extensions/j3dutils.jar:/System/Library/Java/Extensions/jai_codec.jar:/System/Library/Java/Extensions/jai_core.jar:/System/Library/Java/Extensions/mlibwrapper_jai.jar:/System/Library/Java/Extensions/MRJToolkit.jar:/System/Library/Java/Extensions/QTJava.zip:/System/Library/Java/Extensions/vecmath.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/apple_provider.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/dnsns.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/localedata.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/sunjce_provider.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/sunpkcs11.jar
  Application Classpath = /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/boot.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/org-openide-modules.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/org-openide-util.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/locale/org-openide-util_ja.jar:/Application...

Log file :

-------------------------------------------------------------------------------
>Log Session: Saturday, April 3, 2010 9:13:33 AM CDT
>System Info:
  Product Version         = Gephi 0.7 alpha3 200912041610
  Operating System        = Mac OS X version 10.5.8 running on x86_64
  Java; VM; Vendor        = 1.6.0_17; Java HotSpot(TM) 64-Bit Server VM 14.3-b01-101; Apple Inc.
  Runtime                 = Java(TM) SE Runtime Environment 1.6.0_17-b04-248-9M3125
  Java Home               = /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home
  System Locale; Encoding = en_US (gephidesktop); MacRoman
  Home Directory          = /Users/joel
  Current Directory       = /
  User Directory          = /Users/joel/Library/Application Support/gephidesktop/dev
  Installation            = /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/gephidesktop
                            /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11
  Boot & Ext. Classpath   = /System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jsfd.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/classes.jar:/System/Library/Frameworks/JavaVM.framework/Frameworks/JavaRuntimeSupport.framework/Resources/Java/JavaRuntimeSupport.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/ui.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/laf.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/sunrsasign.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jsse.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/jce.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Classes/charsets.jar:/System/Library/Java/Extensions/AppleScriptEngine.jar:/System/Library/Java/Extensions/CoreAudio.jar:/System/Library/Java/Extensions/dns_sd.jar:/System/Library/Java/Extensions/j3daudio.jar:/System/Library/Java/Extensions/j3dcore.jar:/System/Library/Java/Extensions/j3dutils.jar:/System/Library/Java/Extensions/jai_codec.jar:/System/Library/Java/Extensions/jai_core.jar:/System/Library/Java/Extensions/mlibwrapper_jai.jar:/System/Library/Java/Extensions/MRJToolkit.jar:/System/Library/Java/Extensions/QTJava.zip:/System/Library/Java/Extensions/vecmath.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/apple_provider.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/dnsns.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/localedata.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/sunjce_provider.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6.0/Home/lib/ext/sunpkcs11.jar
  Application Classpath   = /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/boot.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/org-openide-modules.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/org-openide-util.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/locale/org-openide-util_ja.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/locale/org-openide-util_pt_BR.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/lib/locale/org-openide-util_zh_CN.jar:/System/Library/Frameworks/JavaVM.framework/Versions/1.6/Home/lib/dt.jar
  Startup Classpath       = /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/core/core.jar:/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11/core/org-openide-filesystems.jar:/Applications/gephi-0.7-alpha3.app/Contents/MacOS/../Resources/gephidesktop/bin/../gephidesktop/core/locale/core_gephidesktop.jar
-------------------------------------------------------------------------------
WARNING [org.netbeans.core.startup.NbEvents]: The extension /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/gephidesktop/modules/ext/beansbinding-1.2.1.jar may be multiply loaded by modules: [/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/gephidesktop/modules/org-gephi-ui-utils.jar, /Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/gephidesktop/modules/org-gephi-desktop-tools.jar]; see: http://www.netbeans.org/download/dev/javadoc/org-openide-modules/org/openide/modules/doc-files/classpath.html#class-path
WARNING [org.openide.filesystems.Ordering]: Not all children in Services/MIMEResolver/ marked with the position attribute: [GephiResolver.xml], but some are: [instance-mime-resolver.xml]
WARNING [org.openide.filesystems.Ordering]: Not all children in Services/MIMEResolver/ marked with the position attribute: [GephiResolver.xml], but some are: [instance-mime-resolver.xml]
Loading native libraries
INFO [org.netbeans.core.startup.NbEvents]: Turning on modules:
   org.openide.util [7.31.2.1 1 201001291424]
   org.openide.modules [7.13.1 200912041610]
   org.jdesktop.swingx [1.6 100331]
   org.gephi.ui.utils [0.7 100331]
   org.openide.awt [7.19.1.1 200912041610]
   org.netbeans.libs.junit4 [1.7.1 200912041610]
   org.netbeans.api.progress/1 [1.16.1.1 1 200912041610]
   org.gephi.utils.longtask [0.7.0.1 100331]
   org.openide.filesystems [7.32.1.1.1 1 200912041610]
   org.gephi.desktop.mrufiles.api [0.7 100331]
   org.jdesktop.layout/1 [1.10.1.103 103 200912041610]
   org.openide.dialogs [7.13.1 200912041610]
   org.openide.nodes [7.12.1.1 200912041610]
   org.openide.windows [6.30.1 200912041610]
   org.netbeans.modules.editor.mimelookup/1 [1.14.1 200912041610]
   org.openide.text [6.27.1 200912041610]
   org.netbeans.swing.outline [1.7.1 200912041610]
   org.openide.explorer [6.22.2.1 1 201001291424]
   org.openide.actions [6.12.1.1 200912041610]
   org.netbeans.modules.queries/1 [1.17.1 200912041610]
   org.openide.loaders [7.10.1 200912041610]
   org.gephi.project.api [0.7.0.3 100331]
   org.gephi.graph.api [0.7.0.2 100331]
   org.gephi.clustering.api [0.7 100331]
   org.netbeans.spi.quicksearch [1.4.1 200912041610]
   org.netbeans.bootstrap/1 [2.22.1 200912041610]
   org.netbeans.core.startup/1 [1.19.1.1 200912041610]
   org.netbeans.modules.autoupdate.services [1.16.2 201003241801]
   org.openide.io [1.20.1 200912041610]
   org.netbeans.swing.plaf [1.12.1 200912041610]
   org.netbeans.core/2 [3.14.1.1 200912041610]
   org.netbeans.modules.options.api/1 [1.16.2 201001291424]
   org.netbeans.modules.options.keymap [1.8.1 200912041610]
   org.netbeans.libs.jna/1 [1.5.1 200912041610]
   org.netbeans.modules.settings/1 [1.22.1.1 200912041610]
   org.netbeans.swing.tabcontrol [1.19.1 200912041610]
   org.netbeans.core.windows/2 [2.17.1.1 200912041610]
   org.netbeans.core.nativeaccess/1 [1.5.1 200912041610]
   org.netbeans.core.io.ui/1 [1.4.1.1 1 200912041610]
   org.gephi.data.attributes.api [0.7 100331]
   org.gephi.ui.components [0.7 100331]
   org.gephi.statistics.api [0.7 100331]
   org.jfree [1.0 100331]
   org.gephi.statistics.plugin [0.7.0.1 100331]
   org.gephi.ui.statistics.plugin [0.7.0.2 100331]
   org.gephi.algorithms [0.7 100331]
   org.netbeans.modules.progress.ui [1.6.1.1 200912041610]
   org.gephi.lib.batik [1.7 100331]
   org.gephi.ui.workspace [0.7 100331]
   org.netbeans.modules.editor.mimelookup.impl/1 [1.7.1 200912041610]
   org.gephi.clustering.plugin [0.7 100331]
   org.gephi.ui.project [0.7 100331]
   org.gephi.layout.api [0.7 100331]
   org.gephi.desktop.layout [0.7.0.1 100331]
   org.gephi.preview.api [0.7.0.2 100331]
   org.gephi.tools.api [0.7 100331]
   org.gephi.lib.gleem [1.0 100331]
   org.gephi.lib.jogl [1.1.0.1 100331]
   org.gephi.utils.collection [0.7 100331]
   org.gephi.lib.validation [0.4 100331]
   org.gephi.visualization [0.7.0.7 100331]
   org.gephi.desktop.hierarchy [0.7.0.1 100331]
   org.gephi.tools.plugin [0.7 100331]
   org.gephi.io.exporter.api [0.7 100331]
   org.gephi.io.exporter.plugin [0.7.0.1 100331]
   org.gephi.ui.exporter.plugin [0.7.0.1 100331]
   org.gephi.ui.propertyeditor [0.7 100331]
   org.gephi.data.attributes [0.7 100331]
   org.gephi.lib.processing [1.0.9 100331]
   org.netbeans.modules.print [7.3.1 200912041610]
   org.gephi.desktop.context [0.7.0.1 100331]
   org.gephi.partition.api [0.7.0.2 100331]
   org.gephi.desktop.partition [0.7.0.1 100331]
   org.netbeans.modules.favorites/1 [1.18.1 200912041610]
   org.netbeans.swing.dirchooser [1.0 100331]
   org.gephi.ranking.api [0.7 100331]
   org.gephi.ui.ranking.plugin [0.7 100331]
   org.gephi.graph.dhns [0.7.0.4 100331]
   org.gephi.layout.plugin [0.7 100331]
   org.gephi.filters.api [0.7 100331]
   org.netbeans.modules.applemenu/1 [1.14.1 200912041610]
   org.gephi.desktop.tools [0.7.0.1 100331]
   org.gephi.ui.components.SplineEditor [0.7 100331]
   org.gephi.desktop.filters [0.7.0.4 100331]
   org.gephi.desktop.io.export [0.7.0.3 100331]
   org.gephi.desktop.preview [0.7.0.2 100331]
   org.gephi.desktop.clustering [0.7 100331]
   org.netbeans.modules.masterfs/2 [2.20.1 200912041610]
   org.gephi.ui.datatable [0.7 100331]
   org.gephi.desktop.statistics [0.7 100331]
   org.gephi.preview [0.7.0.2 100331]
   org.gephi.partition.plugin [0.7 100331]
   org.netbeans.modules.autoupdate.ui [1.14.1 200912041610]
   org.gephi.desktop.ranking [0.7.0.1 100331]
   org.gephi.io.exporter.preview [0.7 100331]
   org.netbeans.core.ui/1 [1.19.2.1 201001291424]
GL_VENDOR: NVIDIA Corporation
GL_RENDERER: NVIDIA GeForce 8600M GT OpenGL Engine
GL_VERSION: 2.0 NVIDIA-1.5.48
Diagnostic information
Input arguments:
   -Djdk.home=/System/Library/Frameworks/JavaVM.framework/Versions/1.6/Home
   -Dnetbeans.system_http_proxy=DIRECT
   -Dnetbeans.system_http_non_proxy_hosts=
   -Dnetbeans.dirs=/Applications/gephi-0.7-alpha3.app/Contents/MacOS/../Resources/gephidesktop/bin/../gephidesktop:
   -Dnetbeans.home=/Applications/gephi-0.7-alpha3.app/Contents/Resources/gephidesktop/platform11
   -Dcom.apple.mrj.application.apple.menu.about.name=gephidesktop
   -Xms64m
   -Xmx256m
   -XX:+HeapDumpOnOutOfMemoryError
   -XX:HeapDumpPath=/Users/joel/Library/Application
   Support/gephidesktop/dev/var/log/heapdump.hprof
Compiler: HotSpot 64-Bit Server Compiler
Heap memory usage: initial 64.0MB maximum 252.0MB
Non heap memory usage: initial 23.2MB maximum 132.0MB
Garbage collector: ParNew (Collections=6 Total time spent=0s)
Garbage collector: ConcurrentMarkSweep (Collections=2 Total time spent=0s)
Classes: loaded=5264 total loaded=5264 unloaded 0
INFO [org.netbeans.core.ui.warmup.DiagnosticTask]: Total memory 2,147,483,648
INFO [null]: Total physical memory 2,147,483,648
WARNING [org.openide.filesystems.Ordering]: Not all children in Menu/Window/ marked with the position attribute: [ClusteringAction.shadow, ContextAction.shadow, DataTableAction.shadow, FiltersAction.shadow, GraphAction.shadow, HierarchyAction.shadow, LayoutAction.shadow, PartitionAction.shadow, PreviewAction.shadow, PreviewSettingsAction.shadow, RankingAction.shadow, StatisticsAction.shadow], but some are: [ViewFavoritesTabAction.shadow, org-netbeans-core-windows-actions-GlobalPropertiesAction.shadow, Output, SwitchToRecentDocumentAction.shadow, ProgressListAction.shadow, Separator3.instance, CloseWindowAction.shadow, MaximizeWindowAction.shadow, org-netbeans-core-windows-actions-UndockAction.shadow, Separator4.instance, CloneDocumentAction.shadow, CloseAllDocumentsAction.shadow, CloseAllButThisAction.shadow, DocumentsAction.shadow, Separator5.instance, org-netbeans-core-windows-actions-ResetWindowsAction.shadow]

Revision history for this message

Christopher Kelvin Lee (cklee) wrote on 2010-04-18:

#2

I'm running OS X 10.6.2 w/ Java 1.6 enabled. Overview/ DataLaboratory/ Preview is partially hidden. Any suggestions on tackling this bug or diving into the log file above?

Revision history for this message

Sébastien Heymann (sebastien.heymann) wrote on 2010-04-20:

#3

"The problem has been identified and it should be fixed in the next release, due in 13 days." (http://forum.gephi.org/viewtopic.php?f=4&t=64#p582)

Mathieu Bastian (mathieu.bastian) on 2010-04-30

Changed in gephi:
status:	Confirmed → Fix Committed

Mathieu Bastian (mathieu.bastian) on 2010-05-01

Changed in gephi:
status:	Fix Committed → Fix Released

Affects		Status	Importance	Assigned to	Milestone
	Gephi	Fix Released	High	Mathieu Bastian	Gephi 0.7alpha2
	0.7	Fix Released	High	Unassigned	Gephi 0.7alpha3

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Menubar is incomplete

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